Query 026674
Match_columns 235
No_of_seqs 123 out of 274
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 11:08:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07200 Mod_r: Modifier of ru 100.0 3E-39 6.5E-44 265.6 14.7 148 75-223 1-148 (150)
2 KOG3270 Uncharacterized conser 99.9 4.4E-27 9.6E-32 206.6 4.1 223 1-229 1-236 (244)
3 KOG2391 Vacuolar sorting prote 96.9 0.39 8.5E-06 45.1 21.9 32 189-220 321-353 (365)
4 KOG3270 Uncharacterized conser 96.2 0.012 2.5E-07 52.7 6.3 130 81-221 50-179 (244)
5 KOG0971 Microtubule-associated 94.6 1.7 3.6E-05 45.8 15.7 104 116-221 449-583 (1243)
6 PF05266 DUF724: Protein of un 94.2 2.2 4.7E-05 36.9 13.8 50 146-195 133-183 (190)
7 KOG1853 LIS1-interacting prote 92.0 8.9 0.00019 35.1 14.5 62 77-138 20-82 (333)
8 KOG0995 Centromere-associated 91.6 16 0.00035 36.6 17.0 65 165-229 327-399 (581)
9 PF07106 TBPIP: Tat binding pr 91.6 4.6 0.0001 33.6 11.7 20 200-219 146-165 (169)
10 PF08317 Spc7: Spc7 kinetochor 88.8 18 0.00038 33.5 14.2 84 81-165 156-244 (325)
11 PF08614 ATG16: Autophagy prot 88.8 7.7 0.00017 33.2 11.0 23 174-196 161-183 (194)
12 PF04111 APG6: Autophagy prote 88.6 11 0.00024 35.0 12.6 76 81-157 16-91 (314)
13 PF06785 UPF0242: Uncharacteri 88.3 20 0.00044 33.9 14.0 75 119-194 138-217 (401)
14 PF05278 PEARLI-4: Arabidopsis 88.3 20 0.00044 32.8 13.8 56 143-204 206-261 (269)
15 smart00787 Spc7 Spc7 kinetocho 88.0 22 0.00049 33.0 14.6 34 129-163 204-237 (312)
16 PF05667 DUF812: Protein of un 87.7 34 0.00073 34.7 16.6 102 109-214 329-434 (594)
17 TIGR03752 conj_TIGR03752 integ 87.2 3.9 8.4E-05 40.1 9.0 62 77-138 41-103 (472)
18 PRK04778 septation ring format 84.8 45 0.00097 33.3 16.1 92 70-161 267-365 (569)
19 PF07888 CALCOCO1: Calcium bin 84.6 36 0.00078 34.2 14.4 53 105-158 147-199 (546)
20 PF06005 DUF904: Protein of un 83.5 15 0.00033 26.9 11.0 36 101-136 18-53 (72)
21 KOG2391 Vacuolar sorting prote 83.3 29 0.00063 32.9 12.4 27 112-138 218-244 (365)
22 KOG0995 Centromere-associated 82.8 39 0.00085 34.0 13.7 59 80-138 264-324 (581)
23 COG0541 Ffh Signal recognition 82.3 2.8 6E-05 40.9 5.6 55 165-219 282-347 (451)
24 cd07596 BAR_SNX The Bin/Amphip 81.7 29 0.00063 28.9 15.6 23 199-221 188-210 (218)
25 PF10498 IFT57: Intra-flagella 81.6 42 0.00091 31.9 13.1 45 145-189 302-346 (359)
26 KOG0980 Actin-binding protein 81.6 78 0.0017 33.7 19.6 29 103-131 363-391 (980)
27 KOG0972 Huntingtin interacting 81.4 27 0.00058 32.7 11.3 49 142-190 306-354 (384)
28 PF03904 DUF334: Domain of unk 81.0 30 0.00065 31.0 11.1 46 74-119 36-82 (230)
29 COG1196 Smc Chromosome segrega 80.9 76 0.0016 34.5 16.3 42 172-213 240-281 (1163)
30 COG5185 HEC1 Protein involved 79.5 60 0.0013 32.3 13.5 18 201-218 412-429 (622)
31 TIGR00959 ffh signal recogniti 79.3 6.1 0.00013 38.2 6.9 53 165-217 282-345 (428)
32 PRK00771 signal recognition pa 79.0 6.7 0.00015 38.1 7.0 32 184-215 305-336 (437)
33 PF09204 Colicin_immun: Bacter 78.5 2.4 5.3E-05 32.4 3.1 24 188-211 6-29 (88)
34 KOG4403 Cell surface glycoprot 78.4 45 0.00097 32.8 12.2 100 75-177 236-342 (575)
35 TIGR02894 DNA_bind_RsfA transc 78.3 28 0.00061 29.5 9.7 54 100-161 96-149 (161)
36 PF07888 CALCOCO1: Calcium bin 77.9 22 0.00048 35.6 10.3 69 95-164 130-198 (546)
37 TIGR01425 SRP54_euk signal rec 76.8 7.7 0.00017 37.7 6.7 31 185-215 313-343 (429)
38 PF09325 Vps5: Vps5 C terminal 76.7 47 0.001 28.4 15.9 23 199-221 206-228 (236)
39 PF05600 DUF773: Protein of un 75.1 40 0.00088 33.4 11.3 16 74-89 393-408 (507)
40 PRK10867 signal recognition pa 73.8 9.5 0.00021 37.0 6.5 51 165-215 283-344 (433)
41 cd07620 BAR_SH3BP1 The Bin/Amp 73.4 73 0.0016 29.0 14.8 53 172-224 176-231 (257)
42 KOG1962 B-cell receptor-associ 73.3 57 0.0012 29.0 10.7 7 92-98 101-107 (216)
43 PF04129 Vps52: Vps52 / Sac2 f 72.7 1E+02 0.0022 30.4 15.5 95 91-200 4-98 (508)
44 PF08580 KAR9: Yeast cortical 72.0 1.3E+02 0.0027 31.2 15.2 50 146-195 244-293 (683)
45 PF05667 DUF812: Protein of un 71.9 1.2E+02 0.0026 30.8 16.1 99 127-228 445-561 (594)
46 PF14662 CCDC155: Coiled-coil 71.6 69 0.0015 28.0 11.9 34 102-135 23-56 (193)
47 COG4026 Uncharacterized protei 71.3 24 0.00053 31.8 7.9 29 110-138 144-172 (290)
48 PF15254 CCDC14: Coiled-coil d 71.3 60 0.0013 34.0 11.6 11 146-156 403-413 (861)
49 PF05529 Bap31: B-cell recepto 71.1 37 0.00081 28.7 8.9 11 128-138 160-170 (192)
50 TIGR02169 SMC_prok_A chromosom 70.1 1.5E+02 0.0032 31.2 15.7 10 129-138 191-200 (1164)
51 PF11593 Med3: Mediator comple 69.5 25 0.00054 33.6 8.0 78 76-156 6-91 (379)
52 PRK13169 DNA replication intia 69.1 54 0.0012 26.1 8.7 48 91-138 5-52 (110)
53 KOG2129 Uncharacterized conser 68.3 1E+02 0.0022 30.3 11.9 30 109-138 159-188 (552)
54 KOG1924 RhoA GTPase effector D 68.3 7.9 0.00017 40.5 4.7 16 85-100 651-666 (1102)
55 PF06160 EzrA: Septation ring 68.2 1.3E+02 0.0029 29.9 17.1 124 70-193 263-394 (560)
56 KOG0996 Structural maintenance 68.2 1.2E+02 0.0026 33.3 13.4 22 174-195 945-966 (1293)
57 PRK05255 hypothetical protein; 68.2 76 0.0017 27.1 11.0 66 161-227 77-149 (171)
58 PRK04778 septation ring format 68.1 1.3E+02 0.0029 29.9 15.0 40 178-217 448-487 (569)
59 KOG2751 Beclin-like protein [S 67.5 29 0.00062 33.9 8.1 49 146-194 185-234 (447)
60 KOG0977 Nuclear envelope prote 67.2 13 0.00027 37.3 5.8 35 176-210 347-384 (546)
61 PRK10869 recombination and rep 67.0 1.4E+02 0.0031 29.8 13.4 18 62-79 201-218 (553)
62 COG2433 Uncharacterized conser 66.9 1.2E+02 0.0025 31.1 12.4 22 173-194 483-504 (652)
63 PF12329 TMF_DNA_bd: TATA elem 66.4 49 0.0011 24.2 9.0 59 104-163 8-66 (74)
64 COG4026 Uncharacterized protei 66.3 72 0.0016 28.8 9.8 38 101-138 128-165 (290)
65 cd07637 BAR_ACAP3 The Bin/Amph 66.2 89 0.0019 27.1 13.0 47 174-226 64-121 (200)
66 KOG2129 Uncharacterized conser 65.9 65 0.0014 31.6 10.0 31 197-227 144-174 (552)
67 PF09602 PhaP_Bmeg: Polyhydrox 65.7 85 0.0018 26.8 15.8 65 145-214 86-158 (165)
68 PF06810 Phage_GP20: Phage min 65.5 79 0.0017 26.3 10.2 16 197-212 117-132 (155)
69 KOG0250 DNA repair protein RAD 65.4 2.1E+02 0.0045 31.2 17.9 20 171-190 780-799 (1074)
70 PF09304 Cortex-I_coil: Cortex 65.2 68 0.0015 25.5 12.2 33 105-137 20-52 (107)
71 PF11802 CENP-K: Centromere-as 65.1 1.1E+02 0.0025 28.0 14.7 59 145-210 128-186 (268)
72 PHA02562 46 endonuclease subun 64.9 1.4E+02 0.003 29.0 14.5 34 125-159 361-394 (562)
73 KOG4253 Tryptophan-rich basic 64.9 37 0.00081 28.9 7.4 47 114-160 36-86 (175)
74 PF06156 DUF972: Protein of un 64.5 49 0.0011 26.0 7.7 47 92-138 6-52 (107)
75 PRK10869 recombination and rep 63.8 1.2E+02 0.0025 30.3 12.0 38 76-113 135-176 (553)
76 PRK10698 phage shock protein P 63.6 1E+02 0.0023 27.0 17.3 31 70-100 2-36 (222)
77 COG0216 PrfA Protein chain rel 63.4 70 0.0015 30.4 9.6 12 80-91 16-27 (363)
78 KOG1029 Endocytic adaptor prot 63.1 2.1E+02 0.0046 30.4 15.0 17 200-216 564-580 (1118)
79 PRK00409 recombination and DNA 63.1 2E+02 0.0043 30.1 14.2 25 172-196 571-595 (782)
80 PF06156 DUF972: Protein of un 63.0 44 0.00095 26.3 7.1 36 101-136 22-57 (107)
81 PF05461 ApoL: Apolipoprotein 62.9 72 0.0016 29.7 9.7 22 78-99 2-23 (313)
82 PF06818 Fez1: Fez1; InterPro 62.8 1.1E+02 0.0024 27.0 13.3 48 180-227 133-180 (202)
83 PRK14127 cell division protein 62.6 36 0.00078 27.0 6.6 44 89-138 24-67 (109)
84 PF09304 Cortex-I_coil: Cortex 62.6 77 0.0017 25.2 9.4 34 105-138 34-67 (107)
85 KOG2398 Predicted proline-seri 62.4 1.3E+02 0.0028 30.8 12.0 69 144-213 160-237 (611)
86 PF07763 FEZ: FEZ-like protein 62.1 72 0.0016 28.9 9.1 72 70-160 163-235 (244)
87 PF09371 Tex_N: Tex-like prote 62.1 39 0.00085 29.3 7.3 31 89-119 40-70 (193)
88 PF10234 Cluap1: Clusterin-ass 61.6 1.2E+02 0.0027 27.7 10.7 17 202-218 239-255 (267)
89 PF15272 BBP1_C: Spindle pole 61.5 1.1E+02 0.0024 26.7 15.3 85 132-217 47-139 (196)
90 PF13851 GAS: Growth-arrest sp 61.5 1.1E+02 0.0023 26.5 14.3 73 115-195 55-131 (201)
91 COG3028 Uncharacterized protei 61.4 1.1E+02 0.0023 26.5 12.5 116 103-224 32-156 (187)
92 PF15254 CCDC14: Coiled-coil d 61.3 2E+02 0.0043 30.4 13.1 34 105-138 459-492 (861)
93 PF12325 TMF_TATA_bd: TATA ele 61.2 85 0.0018 25.2 14.1 18 145-162 69-86 (120)
94 TIGR00634 recN DNA repair prot 61.0 1.3E+02 0.0029 29.8 11.8 11 77-87 140-150 (563)
95 cd07603 BAR_ACAPs The Bin/Amph 60.3 1.1E+02 0.0025 26.4 11.4 85 102-198 69-153 (200)
96 PRK04863 mukB cell division pr 59.9 3E+02 0.0065 31.2 17.9 6 167-172 435-440 (1486)
97 TIGR02894 DNA_bind_RsfA transc 59.9 86 0.0019 26.7 8.7 21 145-165 126-146 (161)
98 PF04949 Transcrip_act: Transc 59.4 1.1E+02 0.0023 25.9 12.9 88 99-190 57-145 (159)
99 PF10018 Med4: Vitamin-D-recep 58.1 53 0.0011 27.9 7.4 56 83-138 4-59 (188)
100 PF07361 Cytochrom_B562: Cytoc 57.9 86 0.0019 24.2 8.4 44 175-218 57-101 (103)
101 PF13851 GAS: Growth-arrest sp 57.1 1.3E+02 0.0028 26.0 18.6 65 146-210 64-132 (201)
102 PF06005 DUF904: Protein of un 57.0 75 0.0016 23.2 8.1 37 102-138 12-48 (72)
103 PF03962 Mnd1: Mnd1 family; I 56.5 1.3E+02 0.0028 25.8 14.6 70 104-174 65-139 (188)
104 PF07426 Dynactin_p22: Dynacti 56.4 1.3E+02 0.0027 25.7 10.0 10 87-96 50-59 (174)
105 COG1340 Uncharacterized archae 56.3 1.7E+02 0.0037 27.2 16.5 29 179-207 259-288 (294)
106 PRK04863 mukB cell division pr 56.1 3.5E+02 0.0076 30.7 19.3 9 201-209 440-448 (1486)
107 KOG0346 RNA helicase [RNA proc 56.0 43 0.00092 33.2 7.1 109 25-164 380-496 (569)
108 PF02403 Seryl_tRNA_N: Seryl-t 55.7 54 0.0012 25.0 6.5 19 176-194 79-97 (108)
109 TIGR00606 rad50 rad50. This fa 55.0 3.3E+02 0.0072 30.1 17.2 41 176-218 1026-1066(1311)
110 TIGR01069 mutS2 MutS2 family p 54.8 2.7E+02 0.0059 29.1 15.7 26 172-197 566-591 (771)
111 COG1579 Zn-ribbon protein, pos 54.6 1.6E+02 0.0035 26.5 13.3 12 127-138 50-61 (239)
112 PRK15422 septal ring assembly 54.4 91 0.002 23.5 9.2 24 101-124 18-41 (79)
113 PF08614 ATG16: Autophagy prot 54.0 1.4E+02 0.003 25.4 11.7 20 144-163 151-170 (194)
114 PRK03918 chromosome segregatio 53.8 2.7E+02 0.0059 28.7 16.9 12 149-160 664-675 (880)
115 PF10146 zf-C4H2: Zinc finger- 53.6 1.6E+02 0.0036 26.2 11.4 14 180-193 90-103 (230)
116 PF04751 DUF615: Protein of un 53.3 1.1E+02 0.0025 25.6 8.5 66 161-227 66-138 (157)
117 PF06637 PV-1: PV-1 protein (P 52.3 2.3E+02 0.005 27.5 12.5 56 75-130 250-307 (442)
118 PF09738 DUF2051: Double stran 52.1 2E+02 0.0043 26.7 11.6 28 197-224 213-242 (302)
119 PF06785 UPF0242: Uncharacteri 52.1 2.2E+02 0.0048 27.2 12.7 44 82-128 76-119 (401)
120 KOG0946 ER-Golgi vesicle-tethe 52.1 3.2E+02 0.007 29.1 14.5 66 95-161 650-716 (970)
121 PF00038 Filament: Intermediat 51.9 1.8E+02 0.0039 26.1 15.2 39 172-210 263-304 (312)
122 KOG2662 Magnesium transporters 51.8 79 0.0017 30.7 8.1 55 71-128 203-261 (414)
123 TIGR03007 pepcterm_ChnLen poly 51.7 2.3E+02 0.005 27.3 13.3 29 92-120 266-294 (498)
124 PF02183 HALZ: Homeobox associ 51.4 65 0.0014 21.4 5.4 34 105-138 9-42 (45)
125 PF07106 TBPIP: Tat binding pr 51.3 1.4E+02 0.003 24.7 13.3 65 102-166 73-138 (169)
126 PF05642 Sporozoite_P67: Sporo 51.1 1.1E+02 0.0024 31.2 9.2 85 51-136 311-414 (727)
127 PF10226 DUF2216: Uncharacteri 51.1 1.7E+02 0.0037 25.6 12.9 65 74-138 12-78 (195)
128 PRK14154 heat shock protein Gr 51.0 1.6E+02 0.0035 25.9 9.4 40 99-138 50-89 (208)
129 PF09454 Vps23_core: Vps23 cor 50.7 90 0.002 22.3 7.2 33 179-211 20-52 (65)
130 PF05600 DUF773: Protein of un 50.7 2.7E+02 0.0057 27.7 11.9 44 169-216 172-215 (507)
131 PF05384 DegS: Sensor protein 50.3 1.5E+02 0.0034 24.9 11.5 36 174-209 115-153 (159)
132 COG1579 Zn-ribbon protein, pos 49.8 2E+02 0.0043 25.9 12.3 42 171-213 142-185 (239)
133 COG5185 HEC1 Protein involved 49.6 2.9E+02 0.0062 27.8 15.1 41 171-211 330-377 (622)
134 PF06730 FAM92: FAM92 protein; 49.5 1.9E+02 0.0041 25.7 15.1 48 174-221 152-200 (219)
135 cd05025 S-100A1 S-100A1: S-100 49.2 1E+02 0.0022 22.5 8.6 51 167-217 28-87 (92)
136 PF10455 BAR_2: Bin/amphiphysi 49.2 2.2E+02 0.0048 26.3 18.2 44 183-227 241-284 (289)
137 PF03670 UPF0184: Uncharacteri 48.9 78 0.0017 24.0 6.1 32 69-100 14-45 (83)
138 smart00338 BRLZ basic region l 48.7 72 0.0016 22.1 5.7 35 101-135 26-60 (65)
139 KOG1818 Membrane trafficking a 48.3 2.8E+02 0.0061 28.5 11.7 28 167-194 469-496 (634)
140 PF06160 EzrA: Septation ring 48.2 3E+02 0.0064 27.5 17.0 54 146-199 315-372 (560)
141 TIGR01010 BexC_CtrB_KpsE polys 47.9 2.3E+02 0.005 26.2 15.9 52 144-195 214-266 (362)
142 PRK01294 lipase chaperone; Pro 47.8 72 0.0016 29.9 7.1 12 90-101 89-100 (336)
143 KOG0161 Myosin class II heavy 47.2 5E+02 0.011 30.4 14.4 91 101-192 1639-1737(1930)
144 KOG0837 Transcriptional activa 47.0 58 0.0013 29.8 6.1 53 86-138 212-264 (279)
145 cd05030 calgranulins Calgranul 47.0 1.1E+02 0.0025 22.4 9.3 51 167-217 27-86 (88)
146 PF06657 Cep57_MT_bd: Centroso 46.9 1.2E+02 0.0025 22.5 7.1 49 145-193 25-76 (79)
147 PF04111 APG6: Autophagy prote 46.6 2.4E+02 0.0052 26.1 13.5 37 102-138 51-87 (314)
148 KOG0994 Extracellular matrix g 46.5 1.9E+02 0.0042 32.2 10.5 80 129-218 1232-1312(1758)
149 KOG4196 bZIP transcription fac 46.2 1.7E+02 0.0036 24.1 9.6 12 74-85 28-39 (135)
150 PRK09039 hypothetical protein; 46.1 2.6E+02 0.0056 26.2 14.1 11 176-186 156-166 (343)
151 PRK13922 rod shape-determining 45.8 84 0.0018 28.0 7.0 21 118-138 72-92 (276)
152 TIGR02168 SMC_prok_B chromosom 45.5 3.8E+02 0.0083 28.1 18.6 17 174-190 436-452 (1179)
153 PF10046 BLOC1_2: Biogenesis o 45.0 1.4E+02 0.003 22.8 13.8 78 107-195 20-97 (99)
154 PF04012 PspA_IM30: PspA/IM30 44.2 2E+02 0.0044 24.5 17.3 17 71-87 2-18 (221)
155 PF07195 FliD_C: Flagellar hoo 43.5 2.2E+02 0.0049 24.8 9.5 22 78-99 136-158 (239)
156 PRK03918 chromosome segregatio 43.5 3.9E+02 0.0085 27.6 18.1 19 79-97 133-151 (880)
157 PRK08032 fliD flagellar cappin 43.2 1.3E+02 0.0028 29.3 8.3 19 81-99 360-379 (462)
158 cd05029 S-100A6 S-100A6: S-100 43.0 1.3E+02 0.0028 22.3 6.6 52 166-217 28-86 (88)
159 cd05031 S-100A10_like S-100A10 42.2 1.4E+02 0.003 22.0 9.1 58 166-223 26-92 (94)
160 PF07795 DUF1635: Protein of u 42.2 1.8E+02 0.0039 25.8 8.3 61 131-197 3-63 (214)
161 cd07618 BAR_Rich1 The Bin/Amph 42.1 2.6E+02 0.0057 25.2 15.5 41 187-227 183-223 (246)
162 cd07625 BAR_Vps17p The Bin/Amp 41.6 2.6E+02 0.0055 24.9 16.0 24 200-223 201-224 (230)
163 PF12325 TMF_TATA_bd: TATA ele 41.4 1.9E+02 0.004 23.3 12.1 21 146-166 63-83 (120)
164 PF12805 FUSC-like: FUSC-like 41.0 2.6E+02 0.0057 24.9 12.8 56 143-198 178-233 (284)
165 KOG3091 Nuclear pore complex, 40.8 3.7E+02 0.008 26.9 10.9 33 154-186 414-447 (508)
166 PF15066 CAGE1: Cancer-associa 40.7 3.8E+02 0.0083 26.7 15.0 87 92-183 314-402 (527)
167 KOG0046 Ca2+-binding actin-bun 40.7 44 0.00096 33.6 4.6 68 144-215 16-90 (627)
168 PRK00888 ftsB cell division pr 40.6 67 0.0015 25.0 4.9 36 101-136 27-62 (105)
169 PF04420 CHD5: CHD5-like prote 40.5 1.3E+02 0.0028 25.1 6.9 22 174-195 69-90 (161)
170 PF08317 Spc7: Spc7 kinetochor 40.4 3E+02 0.0065 25.4 13.9 14 201-214 253-266 (325)
171 TIGR01005 eps_transp_fam exopo 40.4 2.6E+02 0.0056 28.6 10.4 104 73-179 288-402 (754)
172 cd07595 BAR_RhoGAP_Rich-like T 40.3 2.7E+02 0.0059 24.8 16.7 36 192-227 186-221 (244)
173 cd07603 BAR_ACAPs The Bin/Amph 40.1 2.5E+02 0.0053 24.3 13.2 51 171-227 61-122 (200)
174 PF07820 TraC: TraC-like prote 39.9 48 0.001 25.6 3.8 52 146-197 11-62 (92)
175 cd05022 S-100A13 S-100A13: S-1 39.9 1.6E+02 0.0035 22.1 7.9 53 166-218 25-83 (89)
176 KOG2115 Vacuolar sorting prote 39.5 3E+02 0.0064 29.6 10.5 66 94-164 268-333 (951)
177 PF13815 Dzip-like_N: Iguana/D 39.0 1.9E+02 0.0041 22.7 9.2 7 88-94 53-59 (118)
178 PF09738 DUF2051: Double stran 39.0 3.2E+02 0.007 25.4 10.8 20 79-98 78-99 (302)
179 PF10186 Atg14: UV radiation r 39.0 2.7E+02 0.0058 24.4 15.7 111 81-194 41-153 (302)
180 PF00427 PBS_linker_poly: Phyc 38.9 1E+02 0.0022 25.3 5.8 24 187-210 33-56 (131)
181 COG1722 XseB Exonuclease VII s 38.5 1.7E+02 0.0036 21.9 6.9 44 184-227 16-59 (81)
182 TIGR03185 DNA_S_dndD DNA sulfu 38.3 4.4E+02 0.0094 26.7 14.0 20 175-194 266-285 (650)
183 PRK05431 seryl-tRNA synthetase 38.1 2.1E+02 0.0045 27.6 8.8 20 175-194 77-96 (425)
184 PRK12704 phosphodiesterase; Pr 38.0 4.2E+02 0.0091 26.4 14.2 22 200-221 170-191 (520)
185 PF05837 CENP-H: Centromere pr 38.0 1.9E+02 0.0041 22.4 9.0 37 102-138 11-47 (106)
186 COG4467 Regulator of replicati 37.9 1.7E+02 0.0036 23.5 6.6 37 102-138 16-52 (114)
187 PF10456 BAR_3_WASP_bdg: WASP- 37.8 1.6E+02 0.0035 26.3 7.5 75 77-151 124-198 (237)
188 KOG4005 Transcription factor X 37.7 1.9E+02 0.004 26.4 7.7 56 91-154 93-149 (292)
189 TIGR03545 conserved hypothetic 37.5 4.4E+02 0.0096 26.5 12.9 19 201-219 286-304 (555)
190 PF04977 DivIC: Septum formati 36.9 1.3E+02 0.0028 21.1 5.6 36 100-135 16-51 (80)
191 PRK13848 conjugal transfer pro 36.3 59 0.0013 25.3 3.8 24 175-198 41-64 (98)
192 PF07851 TMPIT: TMPIT-like pro 36.0 1.2E+02 0.0027 28.5 6.6 22 170-191 67-88 (330)
193 KOG1924 RhoA GTPase effector D 35.3 91 0.002 33.0 6.0 21 39-59 563-583 (1102)
194 PRK02224 chromosome segregatio 35.3 5.3E+02 0.011 26.7 18.1 31 108-138 606-636 (880)
195 PF02403 Seryl_tRNA_N: Seryl-t 35.2 2E+02 0.0043 21.8 9.5 21 144-164 81-101 (108)
196 PF00658 PABP: Poly-adenylate 35.1 74 0.0016 23.2 4.1 32 68-99 36-67 (72)
197 PF10275 Peptidase_C65: Peptid 34.7 3.1E+02 0.0067 23.9 8.8 20 190-209 156-177 (244)
198 KOG2398 Predicted proline-seri 34.5 5.2E+02 0.011 26.4 12.5 23 173-195 159-181 (611)
199 COG2916 Hns DNA-binding protei 34.5 2.6E+02 0.0056 22.9 8.8 49 106-154 5-53 (128)
200 PLN03094 Substrate binding sub 34.3 4.2E+02 0.0092 25.3 13.5 61 143-207 292-352 (370)
201 KOG0016 Enoyl-CoA hydratase/is 34.1 1E+02 0.0022 28.2 5.6 33 178-211 231-263 (266)
202 TIGR02977 phageshock_pspA phag 34.0 3.1E+02 0.0068 23.7 16.9 31 70-100 2-36 (219)
203 PF02609 Exonuc_VII_S: Exonucl 34.0 1.5E+02 0.0032 20.0 7.0 36 186-221 7-42 (53)
204 PF04420 CHD5: CHD5-like prote 33.7 97 0.0021 25.8 5.1 22 141-162 63-84 (161)
205 PRK13922 rod shape-determining 33.6 3.4E+02 0.0074 24.0 9.6 26 109-134 70-95 (276)
206 cd07606 BAR_SFC_plant The Bin/ 33.6 3.2E+02 0.007 23.7 12.4 114 93-220 65-178 (202)
207 PF05103 DivIVA: DivIVA protei 33.4 27 0.00058 27.3 1.6 41 89-135 19-59 (131)
208 PF15469 Sec5: Exocyst complex 33.3 2.8E+02 0.0061 22.9 11.6 87 132-219 2-120 (182)
209 KOG0250 DNA repair protein RAD 32.8 7E+02 0.015 27.4 15.4 26 170-195 322-347 (1074)
210 PRK00106 hypothetical protein; 32.5 5.3E+02 0.012 25.9 14.3 13 201-213 186-198 (535)
211 COG4985 ABC-type phosphate tra 32.2 3.3E+02 0.0073 24.8 8.4 66 134-218 162-229 (289)
212 KOG3915 Transcription regulato 31.9 5.4E+02 0.012 25.8 13.6 36 80-115 498-535 (641)
213 KOG2857 Predicted MYND Zn-fing 31.9 82 0.0018 26.4 4.2 35 79-114 86-120 (157)
214 PF15070 GOLGA2L5: Putative go 31.9 5.8E+02 0.012 26.1 14.4 26 169-194 232-260 (617)
215 KOG0161 Myosin class II heavy 31.6 9.1E+02 0.02 28.4 18.5 17 148-164 1094-1110(1930)
216 cd00213 S-100 S-100: S-100 dom 31.6 2E+02 0.0042 20.6 9.3 52 166-217 26-86 (88)
217 COG3783 CybC Soluble cytochrom 31.3 2.5E+02 0.0054 22.0 6.5 23 196-218 75-98 (100)
218 PRK14161 heat shock protein Gr 31.2 3.3E+02 0.0073 23.2 10.3 11 88-98 8-18 (178)
219 cd07600 BAR_Gvp36 The Bin/Amph 31.1 3.9E+02 0.0084 23.9 16.7 40 187-227 200-239 (242)
220 PLN02939 transferase, transfer 31.1 6E+02 0.013 27.6 11.4 97 80-188 302-400 (977)
221 PF04849 HAP1_N: HAP1 N-termin 31.0 4.5E+02 0.0097 24.6 13.8 76 63-138 35-113 (306)
222 cd05026 S-100Z S-100Z: S-100Z 31.0 2.2E+02 0.0048 21.1 7.5 51 167-217 29-88 (93)
223 PRK11546 zraP zinc resistance 30.9 3.1E+02 0.0068 22.8 8.9 42 127-172 48-89 (143)
224 PF06248 Zw10: Centromere/kine 30.7 5.5E+02 0.012 25.6 16.2 57 65-123 9-68 (593)
225 KOG0977 Nuclear envelope prote 30.6 5.8E+02 0.013 25.8 14.1 25 168-192 239-263 (546)
226 PF11932 DUF3450: Protein of u 30.3 3.8E+02 0.0082 23.5 11.7 12 110-121 65-76 (251)
227 PF13833 EF-hand_8: EF-hand do 30.3 62 0.0013 21.0 2.8 43 168-210 6-53 (54)
228 PF12718 Tropomyosin_1: Tropom 30.1 3.1E+02 0.0067 22.4 13.4 29 110-138 16-44 (143)
229 KOG3032 Uncharacterized conser 29.8 1.9E+02 0.004 26.3 6.4 25 142-166 202-226 (264)
230 PF09278 MerR-DNA-bind: MerR, 29.8 1.8E+02 0.0039 19.7 5.5 11 77-87 14-24 (65)
231 PRK10803 tol-pal system protei 29.4 4.2E+02 0.009 23.8 9.3 10 201-210 166-175 (263)
232 PRK13169 DNA replication intia 29.2 2.8E+02 0.0061 21.9 6.8 33 102-134 23-55 (110)
233 TIGR02449 conserved hypothetic 29.2 2.2E+02 0.0048 20.5 8.7 31 105-135 4-34 (65)
234 KOG3647 Predicted coiled-coil 29.2 4.4E+02 0.0094 24.6 8.8 65 103-167 114-184 (338)
235 PF15290 Syntaphilin: Golgi-lo 29.1 4.8E+02 0.01 24.3 12.3 13 126-138 86-98 (305)
236 PF07412 Geminin: Geminin; In 29.0 1.8E+02 0.0039 25.6 6.1 32 107-138 117-148 (200)
237 PRK06798 fliD flagellar cappin 29.0 2.3E+02 0.0049 27.6 7.4 19 81-99 336-355 (440)
238 KOG1655 Protein involved in va 29.0 4.1E+02 0.0089 23.5 10.5 59 146-208 106-167 (218)
239 KOG0996 Structural maintenance 28.9 8.5E+02 0.018 27.2 17.0 29 199-227 563-591 (1293)
240 cd07638 BAR_ACAP2 The Bin/Amph 28.9 3.9E+02 0.0085 23.3 13.1 120 82-213 48-168 (200)
241 KOG4302 Microtubule-associated 28.8 6.8E+02 0.015 26.0 15.6 142 76-224 155-370 (660)
242 COG0216 PrfA Protein chain rel 28.8 5.3E+02 0.011 24.7 11.2 27 168-194 73-99 (363)
243 smart00517 PolyA C-terminal do 28.7 77 0.0017 22.8 3.2 29 71-99 28-56 (64)
244 PF01763 Herpes_UL6: Herpesvir 28.6 4.2E+02 0.0091 26.9 9.3 50 80-135 353-404 (557)
245 KOG0010 Ubiquitin-like protein 28.6 3E+02 0.0066 27.4 8.2 32 78-109 163-194 (493)
246 KOG1962 B-cell receptor-associ 28.5 3.4E+02 0.0073 24.2 7.8 43 124-167 153-195 (216)
247 PF05781 MRVI1: MRVI1 protein; 28.4 6.3E+02 0.014 25.5 11.2 26 110-137 214-239 (538)
248 smart00503 SynN Syntaxin N-ter 28.2 2.6E+02 0.0055 20.9 14.0 17 201-217 98-114 (117)
249 KOG4010 Coiled-coil protein TP 28.2 4.1E+02 0.009 23.3 12.7 105 67-194 30-152 (208)
250 PLN02320 seryl-tRNA synthetase 28.2 3.4E+02 0.0073 27.1 8.6 18 81-98 67-84 (502)
251 PF09730 BicD: Microtubule-ass 28.2 7.1E+02 0.015 26.1 17.3 24 62-85 249-272 (717)
252 PF15272 BBP1_C: Spindle pole 28.1 4.1E+02 0.0089 23.3 11.6 10 128-137 88-97 (196)
253 PRK05431 seryl-tRNA synthetase 28.1 3.3E+02 0.0071 26.2 8.4 18 145-162 81-98 (425)
254 PLN02678 seryl-tRNA synthetase 27.8 5.9E+02 0.013 24.9 10.3 17 145-161 86-102 (448)
255 KOG0804 Cytoplasmic Zn-finger 27.5 6.2E+02 0.014 25.1 10.8 81 80-164 363-448 (493)
256 COG4372 Uncharacterized protei 27.4 6E+02 0.013 24.9 14.0 16 146-161 153-168 (499)
257 COG4372 Uncharacterized protei 27.4 6E+02 0.013 24.9 14.9 12 201-212 278-289 (499)
258 KOG0288 WD40 repeat protein Ti 27.2 6.1E+02 0.013 25.0 13.8 15 193-207 108-122 (459)
259 PRK09841 cryptic autophosphory 27.1 7E+02 0.015 25.6 17.0 79 143-221 310-392 (726)
260 TIGR00219 mreC rod shape-deter 27.0 3.8E+02 0.0083 24.3 8.2 13 112-124 70-82 (283)
261 PRK10698 phage shock protein P 26.6 4.4E+02 0.0095 23.1 15.7 18 173-190 168-185 (222)
262 KOG4196 bZIP transcription fac 26.6 2.4E+02 0.0053 23.2 6.0 37 76-114 22-60 (135)
263 KOG4094 Uncharacterized conser 26.5 3.5E+02 0.0075 23.0 7.1 18 200-217 128-145 (178)
264 PF01486 K-box: K-box region; 26.5 2.3E+02 0.005 21.3 5.8 6 78-83 46-51 (100)
265 COG3599 DivIVA Cell division i 26.4 4.5E+02 0.0098 23.1 13.5 45 74-121 19-64 (212)
266 PF12718 Tropomyosin_1: Tropom 26.4 3.6E+02 0.0078 22.0 15.8 37 102-138 22-58 (143)
267 KOG0964 Structural maintenance 26.2 9E+02 0.02 26.6 14.2 49 109-158 419-467 (1200)
268 cd07642 BAR_ASAP2 The Bin/Amph 26.2 4.7E+02 0.01 23.3 9.5 67 87-163 55-123 (215)
269 PF05615 THOC7: Tho complex su 26.2 3.4E+02 0.0073 21.6 9.9 8 131-138 97-104 (139)
270 KOG2880 SMAD6 interacting prot 26.0 4.9E+02 0.011 25.2 8.8 33 100-138 72-104 (424)
271 KOG0963 Transcription factor/C 26.0 6.6E+02 0.014 25.9 10.1 69 82-152 282-352 (629)
272 PF12777 MT: Microtubule-bindi 25.9 3.8E+02 0.0081 24.9 8.1 10 175-184 267-276 (344)
273 KOG2896 UV radiation resistanc 25.7 6.1E+02 0.013 24.4 14.5 18 181-198 165-182 (377)
274 KOG2010 Double stranded RNA bi 25.5 6E+02 0.013 24.3 10.2 6 214-219 272-277 (405)
275 PF15397 DUF4618: Domain of un 25.5 5.2E+02 0.011 23.6 12.5 111 103-221 1-121 (258)
276 cd07619 BAR_Rich2 The Bin/Amph 25.5 5.1E+02 0.011 23.4 15.5 55 174-228 165-226 (248)
277 PF10392 COG5: Golgi transport 25.5 3.5E+02 0.0075 21.5 10.5 28 130-158 87-114 (132)
278 PF13499 EF-hand_7: EF-hand do 25.4 83 0.0018 21.1 2.8 13 196-208 54-66 (66)
279 PF14775 NYD-SP28_assoc: Sperm 25.2 2.5E+02 0.0053 19.7 6.2 36 94-129 19-54 (60)
280 PF08172 CASP_C: CASP C termin 25.2 4.7E+02 0.01 23.5 8.3 32 107-138 85-116 (248)
281 KOG2264 Exostosin EXT1L [Signa 25.1 5.7E+02 0.012 26.5 9.4 39 131-170 116-154 (907)
282 PF01540 Lipoprotein_7: Adhesi 25.1 5.7E+02 0.012 23.9 12.1 26 179-204 278-303 (353)
283 KOG0517 Beta-spectrin [Cytoske 25.1 1.2E+03 0.026 27.7 16.7 75 146-220 1350-1429(2473)
284 cd05532 POLBc_alpha DNA polyme 25.0 68 0.0015 30.6 3.1 49 185-233 273-330 (400)
285 cd07670 BAR_SNX18 The Bin/Amph 25.0 4.9E+02 0.011 23.0 9.0 91 75-165 93-183 (207)
286 PF11544 Spc42p: Spindle pole 24.9 3E+02 0.0065 20.6 6.7 23 113-135 3-25 (76)
287 PF15079 DUF4546: Domain of un 24.8 4.6E+02 0.0099 22.7 7.7 7 142-148 80-86 (205)
288 cd07628 BAR_Atg24p The Bin/Amp 24.7 4.3E+02 0.0093 22.3 13.4 48 176-226 70-117 (185)
289 PRK10361 DNA recombination pro 24.7 7E+02 0.015 24.8 16.3 129 81-211 40-180 (475)
290 KOG4571 Activating transcripti 24.5 3.1E+02 0.0068 25.5 7.1 32 107-138 247-278 (294)
291 TIGR00634 recN DNA repair prot 24.5 7E+02 0.015 24.7 14.4 15 64-78 207-221 (563)
292 PF15619 Lebercilin: Ciliary p 24.4 4.6E+02 0.01 22.6 14.7 22 115-136 82-103 (194)
293 PF10168 Nup88: Nuclear pore c 24.3 8.2E+02 0.018 25.5 17.1 20 147-166 596-615 (717)
294 KOG0260 RNA polymerase II, lar 23.9 1.7E+02 0.0038 32.5 5.9 52 12-66 1537-1590(1605)
295 smart00340 HALZ homeobox assoc 23.8 1.7E+02 0.0036 19.6 3.8 26 111-136 8-33 (44)
296 COG2919 Septum formation initi 23.8 3.1E+02 0.0067 21.5 6.2 36 102-137 51-86 (117)
297 TIGR00414 serS seryl-tRNA synt 23.7 4.6E+02 0.01 25.2 8.5 74 83-164 29-103 (418)
298 KOG0999 Microtubule-associated 23.7 8.2E+02 0.018 25.2 12.1 89 104-193 124-216 (772)
299 PRK15365 type III secretion sy 23.6 3.7E+02 0.008 21.2 8.9 26 80-105 8-33 (107)
300 KOG3650 Predicted coiled-coil 23.6 3.2E+02 0.0069 21.6 5.9 31 100-130 62-92 (120)
301 KOG2264 Exostosin EXT1L [Signa 23.5 2.6E+02 0.0056 28.8 6.7 35 104-138 103-137 (907)
302 PF07200 Mod_r: Modifier of ru 23.4 3.9E+02 0.0084 21.4 13.7 116 93-209 9-130 (150)
303 PF05276 SH3BP5: SH3 domain-bi 23.3 5.5E+02 0.012 23.0 14.6 96 100-195 127-226 (239)
304 KOG0999 Microtubule-associated 23.3 8.3E+02 0.018 25.2 13.2 22 115-136 170-191 (772)
305 cd07592 BAR_Endophilin_A The B 23.3 5.2E+02 0.011 22.8 17.4 50 177-226 163-212 (223)
306 PF10454 DUF2458: Protein of u 23.2 4.4E+02 0.0094 21.9 8.7 50 89-138 1-50 (150)
307 PRK01326 prsA foldase protein 23.1 5.8E+02 0.013 23.3 10.2 46 160-209 135-181 (310)
308 PF07851 TMPIT: TMPIT-like pro 23.0 6.5E+02 0.014 23.8 10.2 14 142-155 26-39 (330)
309 KOG0245 Kinesin-like protein [ 23.0 1.7E+02 0.0037 31.9 5.6 50 128-180 397-446 (1221)
310 cd07664 BAR_SNX2 The Bin/Amphi 23.0 5.4E+02 0.012 22.8 16.6 26 91-116 109-134 (234)
311 PF14495 Cytochrom_C550: Cytoc 22.9 53 0.0011 27.1 1.6 37 59-103 88-124 (135)
312 PF09726 Macoilin: Transmembra 22.8 8.7E+02 0.019 25.2 16.3 133 80-213 431-580 (697)
313 TIGR02680 conserved hypothetic 22.8 1.1E+03 0.024 26.4 20.3 29 75-103 214-242 (1353)
314 KOG2077 JNK/SAPK-associated pr 22.5 8.1E+02 0.018 25.4 9.9 23 110-132 324-346 (832)
315 PF14662 CCDC155: Coiled-coil 22.4 5.3E+02 0.011 22.6 13.3 17 203-221 165-181 (193)
316 cd07639 BAR_ACAP1 The Bin/Amph 22.4 5.2E+02 0.011 22.5 11.5 82 104-197 71-152 (200)
317 COG2183 Tex Transcriptional ac 22.3 4.9E+02 0.011 27.5 8.7 79 89-174 53-132 (780)
318 COG1256 FlgK Flagellar hook-as 22.3 8.1E+02 0.018 24.7 12.5 95 80-174 94-201 (552)
319 PF07765 KIP1: KIP1-like prote 22.2 2.8E+02 0.0061 20.6 5.2 33 104-136 28-60 (74)
320 COG0576 GrpE Molecular chapero 22.1 5.1E+02 0.011 22.3 8.6 17 192-208 114-131 (193)
321 PF11567 PfUIS3: Plasmodium fa 22.1 87 0.0019 24.2 2.5 32 75-106 39-70 (101)
322 COG3851 UhpB Signal transducti 22.0 7.6E+02 0.017 24.2 10.5 78 102-192 273-353 (497)
323 PF09602 PhaP_Bmeg: Polyhydrox 22.0 5E+02 0.011 22.1 15.4 15 200-214 122-136 (165)
324 PLN02320 seryl-tRNA synthetase 22.0 7.3E+02 0.016 24.8 9.6 17 145-161 145-161 (502)
325 PF05120 GvpG: Gas vesicle pro 22.0 2E+02 0.0044 21.5 4.5 31 166-207 27-57 (79)
326 PF10267 Tmemb_cc2: Predicted 22.0 7.3E+02 0.016 24.0 13.3 98 110-211 214-313 (395)
327 PRK09039 hypothetical protein; 21.8 6.6E+02 0.014 23.5 15.1 24 171-194 176-199 (343)
328 smart00498 FH2 Formin Homology 21.6 7.1E+02 0.015 23.8 12.5 46 174-219 327-381 (432)
329 PRK01433 hscA chaperone protei 21.4 8.5E+02 0.018 24.5 12.8 19 201-219 566-584 (595)
330 PRK05849 hypothetical protein; 21.4 9.8E+02 0.021 25.3 10.8 30 173-208 484-513 (783)
331 PRK06945 flgK flagellar hook-a 21.3 9E+02 0.019 24.8 12.9 106 80-185 92-210 (651)
332 PRK10803 tol-pal system protei 21.2 6E+02 0.013 22.7 8.5 15 147-161 85-99 (263)
333 cd07623 BAR_SNX1_2 The Bin/Amp 21.1 5.5E+02 0.012 22.2 16.3 27 90-116 98-124 (224)
334 TIGR03545 conserved hypothetic 21.1 8.6E+02 0.019 24.5 16.8 21 69-89 152-172 (555)
335 COG3074 Uncharacterized protei 21.0 3.6E+02 0.0077 20.0 8.9 21 101-121 18-38 (79)
336 PRK14064 exodeoxyribonuclease 21.0 3.5E+02 0.0075 19.9 7.0 40 185-224 13-52 (75)
337 PF15063 TC1: Thyroid cancer p 20.9 78 0.0017 23.8 2.0 14 67-80 29-42 (79)
338 PHA02682 ORF080 virion core pr 20.9 6E+02 0.013 22.6 9.8 63 106-177 213-275 (280)
339 COG1196 Smc Chromosome segrega 20.8 1.1E+03 0.024 25.7 18.1 13 177-189 445-457 (1163)
340 PF13514 AAA_27: AAA domain 20.7 1.1E+03 0.024 25.6 17.6 130 81-212 829-977 (1111)
341 KOG3331 Mitochondrial/chloropl 20.6 4.9E+02 0.011 23.0 7.1 22 66-87 62-83 (213)
342 PRK00977 exodeoxyribonuclease 20.2 3.7E+02 0.008 19.9 7.0 36 185-220 17-52 (80)
343 COG3456 Predicted component of 20.2 8.3E+02 0.018 24.0 10.2 26 159-184 355-380 (430)
344 PF10234 Cluap1: Clusterin-ass 20.1 6.8E+02 0.015 22.9 11.9 82 147-229 138-219 (267)
345 smart00549 TAFH TAF homology. 20.1 2.1E+02 0.0045 22.1 4.3 27 184-210 25-51 (92)
346 TIGR00219 mreC rod shape-deter 20.1 4.1E+02 0.0089 24.1 7.0 27 94-120 59-85 (283)
No 1
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=100.00 E-value=3e-39 Score=265.64 Aligned_cols=148 Identities=36% Similarity=0.523 Sum_probs=132.6
Q ss_pred hccCCHHHHHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 026674 75 LKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLH 154 (235)
Q Consensus 75 L~~LS~~EL~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ 154 (235)
|++||++||++|++|++++++||.++|+|+.+...+++++++|++||+.||+++|+|+++|+++ ...+.+++.|+.+|.
T Consensus 1 L~~lS~~eL~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l-~~~~~~~~~L~~~~~ 79 (150)
T PF07200_consen 1 LQDLSTEELQELLSDEEKLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQL-QELYEELKELESEYQ 79 (150)
T ss_dssp GGS-TTHHHHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999 589999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 155 DLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHL 223 (235)
Q Consensus 155 ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~ 223 (235)
+++++++.++.+|||++|+++|++++.++|++||+||++|++|++||++||++|+++|++||+|++|..
T Consensus 80 ~k~~~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~f~~~R~~yH~R~~K~E 148 (150)
T PF07200_consen 80 EKEQQQDELSSNYSPDALLARLQAAASEAEEESEELAEEFLDGEIDVDDFLKQFKEKRKLYHLRRAKEE 148 (150)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SSSHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999864
No 2
>KOG3270 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=4.4e-27 Score=206.60 Aligned_cols=223 Identities=37% Similarity=0.535 Sum_probs=187.7
Q ss_pred CCCCCCCccc-cCCCCCCCC-CCCcccCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHhhhhHHhcc
Q 026674 1 MFKFWGSNEQ-QAQPRPQDV-TSQSWYPPSVV-SPDSSRPATPSMSSFGSLNLQRPTEQSQPLSHVSPAEAAGIIALLKD 77 (235)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~-~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~L~~ 77 (235)
||.|||+..| |++.+|... +.-.||||+.+ +++++++.++++.=-+..+.-=+.+ -+.+|++..++.-.|.+
T Consensus 1 l~~~~g~~~~q~~~~~~~~~~~~~p~y~ps~~~s~~~~q~q~~~~~~~~~~lk~i~~d-----~~~~~~~~~~~~~~L~~ 75 (244)
T KOG3270|consen 1 LFEFWGSKMQQQGQSRPSPQNSQDPWYSPSLATSRSLAQPQATSSGQISALLKSIIVD-----DQQSPGEADGLLALLKD 75 (244)
T ss_pred CcchhcchhhhccccCCCcccccCCCcChhhhhchhhcccccccchhhhhhhhccccc-----cccCccchhhHHHHhhh
Confidence 7999999874 477766544 66789999998 9999999876544322111111112 35678888888888888
Q ss_pred C-CHHHHHHHhc--CHHHHHHHHHhcHHHHHHH------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHH
Q 026674 78 K-SVDELRKLLA--DKDAYRQFLLSIDQVKIQN------NIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAA 148 (235)
Q Consensus 78 L-S~~EL~eLL~--d~d~l~~~v~~l~~vq~l~------~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~ 148 (235)
. |++||.+++. |.|....|+..+++|+.++ ..+++|....+.||+.||++++.+.++|+.+. +.++.+..
T Consensus 76 ~~sv~El~~l~a~r~~d~~~Q~i~lldQv~~l~~l~~~~~~~e~L~~~~e~l~r~nl~~~p~l~el~~~~~-~~~t~~~~ 154 (244)
T KOG3270|consen 76 KKSVDELNELLAERDKDAEEQFIELLDQVQKLNGLEVARKIQEKLVKSVEKLARENLEKEPALVELRNQAS-DIFTQLEN 154 (244)
T ss_pred hhhhHHHHHhhhhhchhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccchhhccchHHHHhhhh-hhhhhhhc
Confidence 8 9999999998 9999999999999999999 79999999999999999999999999999995 45555555
Q ss_pred -HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026674 149 -AQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKT 227 (235)
Q Consensus 149 -L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~a~~~ 227 (235)
.......+.+++.+.+..|++..+++||++++.+++++|+..++.|+.|.++++.|+..|...|+.+|.|..|+.++..
T Consensus 155 ~~~s~~~~l~~~~~~~~~~~~~~~~l~rL~~aa~~~~~~s~~~~~~fl~~~~~~~~f~ss~~~~~~~~~~r~~~~~~l~~ 234 (244)
T KOG3270|consen 155 GEISKEDELKKFKDKKSKPYSPKIILARLKAAAMEADEESDRQGEQFLPGPPAVGGFPSSGFMPRTGSHQRGPKEERLPP 234 (244)
T ss_pred cccccchHHHhhhcccccccchHHHHHHHHHHHHhhcccccccccCCCCCCcccccccccccccCcccCCCCcccccCCC
Confidence 4445556666788899999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cc
Q 026674 228 HS 229 (235)
Q Consensus 228 ~~ 229 (235)
..
T Consensus 235 ~~ 236 (244)
T KOG3270|consen 235 IL 236 (244)
T ss_pred CC
Confidence 55
No 3
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.39 Score=45.08 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=25.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHH-HHHHHHHHHH
Q 026674 189 NLHRQLLDRELDIGAFVQKYKK-LRTTYHRRAL 220 (235)
Q Consensus 189 ~Lae~FL~Geidvd~FL~qF~e-~RklyH~Rr~ 220 (235)
.|.+.|-+|.|++|.||+.-+- .|+-+-+|+.
T Consensus 321 ~L~~~~r~G~i~l~~yLr~VR~lsReQF~~rat 353 (365)
T KOG2391|consen 321 SLGKSLRDGVIDLDQYLRHVRLLSREQFILRAT 353 (365)
T ss_pred HHHHHHhcCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888999999999998875 4666666654
No 4
>KOG3270 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.012 Score=52.73 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=84.1
Q ss_pred HHHHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026674 81 DELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQK 160 (235)
Q Consensus 81 ~EL~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~ 160 (235)
.+|+.++.|.+...+-+.++..+ +... ..+-.-|+.+|+++++.++++.++.++++ .+.+++.....-+++.+.
T Consensus 50 ~~lk~i~~d~~~~~~~~~~~~~~--L~~~-~sv~El~~l~a~r~~d~~~Q~i~lldQv~--~l~~l~~~~~~~e~L~~~- 123 (244)
T KOG3270|consen 50 ALLKSIIVDDQQSPGEADGLLAL--LKDK-KSVDELNELLAERDKDAEEQFIELLDQVQ--KLNGLEVARKIQEKLVKS- 123 (244)
T ss_pred hhhhccccccccCccchhhHHHH--hhhh-hhhHHHHHhhhhhchhhhHHHHHHHHHHH--HhhccchhHHHHHHHHHH-
Confidence 45666777766666655555433 2222 45556678888999999999999999885 344444433222222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 026674 161 EQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALV 221 (235)
Q Consensus 161 ~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K 221 (235)
-+...+-+. .+.-++-++.+.+.++-..|..|+++..+|+.+|+..-...|.|..+
T Consensus 124 ~e~l~r~nl-----~~~p~l~el~~~~~~~~t~~~~~~~s~~~~l~~~~~~~~~~~~~~~~ 179 (244)
T KOG3270|consen 124 VEKLARENL-----EKEPALVELRNQASDIFTQLENGEISKEDELKKFKDKKSKPYSPKII 179 (244)
T ss_pred HHHhcccch-----hhccchHHHHhhhhhhhhhhhccccccchHHHhhhcccccccchHHH
Confidence 222222222 34556677778888888889999999999999988777777666665
No 5
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.56 E-value=1.7 Score=45.78 Aligned_cols=104 Identities=20% Similarity=0.235 Sum_probs=68.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-H----------------------HHhcCCHHHH
Q 026674 116 ETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKE-Q----------------------LLKLYSPASL 172 (235)
Q Consensus 116 ~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~-~----------------------l~~~~Sp~aL 172 (235)
=+.+|++.|+.++.++..|+..+ ..++++..+.+++.+-.+++. + +-.-|+.+..
T Consensus 449 MV~qLtdknlnlEekVklLeetv--~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqT 526 (1243)
T KOG0971|consen 449 MVEQLTDKNLNLEEKVKLLEETV--GDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQT 526 (1243)
T ss_pred HHHHHHhhccCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH
Confidence 46789999999999999999877 468888888887776544333 1 1235666666
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhc------C--CCCHHHHHHHHHHHHHHHHHHHHH
Q 026674 173 LKRIQEAMNKTEEESENLHRQLLD------R--ELDIGAFVQKYKKLRTTYHRRALV 221 (235)
Q Consensus 173 ~~~Lq~a~~eaEeeSE~Lae~FL~------G--eidvd~FL~qF~e~RklyH~Rr~K 221 (235)
+.+++..+....+.-..+.++-.. + .++-..|.-+-+=.-...|-|.+-
T Consensus 527 I~KfRelva~Lqdqlqe~~dq~~Sseees~q~~s~~~et~dyk~~fa~skayaraie 583 (1243)
T KOG0971|consen 527 IKKFRELVAHLQDQLQELTDQQESSEEESQQPPSVDPETFDYKIKFAESKAYARAIE 583 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCchhhhHHHHHHHHhHHHHHHHH
Confidence 666666666666655555443221 2 245566666666666667766654
No 6
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=94.22 E-value=2.2 Score=36.95 Aligned_cols=50 Identities=22% Similarity=0.291 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 026674 146 LAAAQEKLHDLERQKEQLL-KLYSPASLLKRIQEAMNKTEEESENLHRQLL 195 (235)
Q Consensus 146 l~~L~e~~~ek~~q~~~l~-~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL 195 (235)
+..|+.+..+++.+...+. .+=.-+.=+.+|+..+..++++++.+.-+|-
T Consensus 133 i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 133 IKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444322221 1222335578899999999999999888884
No 7
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=91.98 E-value=8.9 Score=35.07 Aligned_cols=62 Identities=8% Similarity=0.061 Sum_probs=41.3
Q ss_pred cCCHHHHHHHhcCHHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 77 DKSVDELRKLLADKDAYRQFLLSIDQV-KIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 77 ~LS~~EL~eLL~d~d~l~~~v~~l~~v-q~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
.+..+=++.+++-.+.|.+|-...-++ ..+...++++...|+.|--.|-.+.-+++.+|...
T Consensus 20 ~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~ 82 (333)
T KOG1853|consen 20 LLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQ 82 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777777766555 34555777777778877777766666666666544
No 8
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.57 E-value=16 Score=36.65 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=42.2
Q ss_pred hcCCHHHHH------HHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH--HHHHHHHhhhcc
Q 026674 165 KLYSPASLL------KRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHR--RALVHLSAKTHS 229 (235)
Q Consensus 165 ~~~Sp~aL~------~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~--Rr~K~~a~~~~~ 229 (235)
++||+.-+- ..|...+.++.-+.|.+-+.--+-+....+|.++-..+=.-||. |+++..+++.+.
T Consensus 327 Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~ 399 (581)
T KOG0995|consen 327 QGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSK 399 (581)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 477777653 44777777888888887777644444457777666666555664 677766555544
No 9
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.57 E-value=4.6 Score=33.60 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 026674 200 DIGAFVQKYKKLRTTYHRRA 219 (235)
Q Consensus 200 dvd~FL~qF~e~RklyH~Rr 219 (235)
++....+.|...|+.+=.|+
T Consensus 146 e~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 146 EKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777766654
No 10
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.80 E-value=18 Score=33.49 Aligned_cols=84 Identities=19% Similarity=0.241 Sum_probs=40.8
Q ss_pred HHHHHHhcCHHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026674 81 DELRKLLADKDAYRQFLLSIDQV-KIQNNIRDELHRETLQIA----RDNLDKELRMIELRNQSKIIRTTELAAAQEKLHD 155 (235)
Q Consensus 81 ~EL~eLL~d~d~l~~~v~~l~~v-q~l~~~~e~l~~~N~~LA----e~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~e 155 (235)
+.+..|-+|...|.+.+..+..+ ..+......|+.+...|- +-...-..+|..+|.++. ..-.+++..+.+..+
T Consensus 156 ~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~-~~~~~i~~~k~~l~e 234 (325)
T PF08317_consen 156 ENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELA-EQKEEIEAKKKELAE 234 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34444555666666666554433 222333333333332222 123334456667777663 344456655566666
Q ss_pred HHHHHHHHHh
Q 026674 156 LERQKEQLLK 165 (235)
Q Consensus 156 k~~q~~~l~~ 165 (235)
+..+++.+..
T Consensus 235 l~~el~~l~~ 244 (325)
T PF08317_consen 235 LQEELEELEE 244 (325)
T ss_pred HHHHHHHHHH
Confidence 6655554443
No 11
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.79 E-value=7.7 Score=33.16 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=14.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhc
Q 026674 174 KRIQEAMNKTEEESENLHRQLLD 196 (235)
Q Consensus 174 ~~Lq~a~~eaEeeSE~Lae~FL~ 196 (235)
..+......+++|-..|+++|++
T Consensus 161 ~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 161 NMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666777777777664
No 12
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.58 E-value=11 Score=34.96 Aligned_cols=76 Identities=20% Similarity=0.348 Sum_probs=19.5
Q ss_pred HHHHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026674 81 DELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLE 157 (235)
Q Consensus 81 ~EL~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~ 157 (235)
.+++....+.+.+..|+..+............+..+...|-++.-+...+|.++..+.. .--.++..++.+..++.
T Consensus 16 ~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~-~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 16 KQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKERE-ELDQELEELEEELEELD 91 (314)
T ss_dssp --------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 45666777788888888877643333334444444444444433344444444444331 12233444444444443
No 13
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=88.31 E-value=20 Score=33.94 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=43.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-HHHHHHHHHHHHHHhHHHHHHHHHH
Q 026674 119 QIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLY----S-PASLLKRIQEAMNKTEEESENLHRQ 193 (235)
Q Consensus 119 ~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~----S-p~aL~~~Lq~a~~eaEeeSE~Lae~ 193 (235)
.+-++|-.++-+|+++..++. ++-++-..|..+..+-..-++.+.+.| . +...+++=|+.+.+.|..-++|--.
T Consensus 138 ~~~EEn~~lqlqL~~l~~e~~-Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~E 216 (401)
T PF06785_consen 138 HLREENQCLQLQLDALQQECG-EKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYE 216 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666666666662 444555555555555544444444433 3 3445777788888877777775544
Q ss_pred H
Q 026674 194 L 194 (235)
Q Consensus 194 F 194 (235)
|
T Consensus 217 i 217 (401)
T PF06785_consen 217 I 217 (401)
T ss_pred H
Confidence 4
No 14
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=88.28 E-value=20 Score=32.77 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHH
Q 026674 143 TTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAF 204 (235)
Q Consensus 143 ~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~F 204 (235)
-.++..+.+++.++++++.++..+. .. ....+.+++.++-.|.+.+...+.-|+.|
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i--~e----~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERI--TE----MKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777777777777777665 23 34446678888888888765544445555
No 15
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.01 E-value=22 Score=32.97 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=15.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 129 LRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQL 163 (235)
Q Consensus 129 ~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l 163 (235)
.+|..+|.++. ....++.....+..+++.++..+
T Consensus 204 ~eL~~lk~~l~-~~~~ei~~~~~~l~e~~~~l~~l 237 (312)
T smart00787 204 TELDRAKEKLK-KLLQEIMIKVKKLEELEEELQEL 237 (312)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555552 33444444444444444444433
No 16
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=87.69 E-value=34 Score=34.66 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---H-HhcCCHHHHHHHHHHHHHHhH
Q 026674 109 IRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQ---L-LKLYSPASLLKRIQEAMNKTE 184 (235)
Q Consensus 109 ~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~---l-~~~~Sp~aL~~~Lq~a~~eaE 184 (235)
++++|..++..|...-.....++..++..++ .-..++...+.+..++++++.. + .=-.+++.-+++|+..+....
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~-q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~ 407 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLK-QLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASE 407 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 4444444555554444445555555555442 1223344444444444443331 1 113467777799999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 026674 185 EESENLHRQLLDRELDIGAFVQKYKKLRTT 214 (235)
Q Consensus 185 eeSE~Lae~FL~Geidvd~FL~qF~e~Rkl 214 (235)
+.-..|+.+|-.-... .+++|+..|..
T Consensus 408 ~rl~~L~~qWe~~R~p---L~~e~r~lk~~ 434 (594)
T PF05667_consen 408 QRLVELAQQWEKHRAP---LIEEYRRLKEK 434 (594)
T ss_pred HHHHHHHHHHHHHHhH---HHHHHHHHHHH
Confidence 9999999999765543 44555555543
No 17
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=87.20 E-value=3.9 Score=40.13 Aligned_cols=62 Identities=21% Similarity=0.174 Sum_probs=45.8
Q ss_pred cCCHHHHHHHhcCHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 77 DKSVDELRKLLADKDAYRQFLLSI-DQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 77 ~LS~~EL~eLL~d~d~l~~~v~~l-~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
.|+.+|++.|=-+-|-..+=|..| -++++++.+.+.+..+|+.|.++|-.++.+...+..++
T Consensus 41 ~ltpee~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 41 ELSPEELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred cCCcchhHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 889999998765544333333332 35788888999999999999999988877666666665
No 18
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=84.76 E-value=45 Score=33.26 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=46.5
Q ss_pred hhhHHhccCCHHHHHHHhcC-HHHHHHHHHhcH----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH--HHH
Q 026674 70 GIIALLKDKSVDELRKLLAD-KDAYRQFLLSID----QVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSK--IIR 142 (235)
Q Consensus 70 ~~f~~L~~LS~~EL~eLL~d-~d~l~~~v~~l~----~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~--~~~ 142 (235)
...+.|..+..++.++-++. .+.++.+...+. ..+........+...+..+-+.|-....+++.++.... -..
T Consensus 267 ~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e 346 (569)
T PRK04778 267 ENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESE 346 (569)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchh
Confidence 34445666776666666544 444554444332 22333334444555555666666666667777766521 112
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026674 143 TTELAAAQEKLHDLERQKE 161 (235)
Q Consensus 143 ~~el~~L~e~~~ek~~q~~ 161 (235)
....+.+..++.++..++.
T Consensus 347 ~~~~~~lekeL~~Le~~~~ 365 (569)
T PRK04778 347 LESVRQLEKQLESLEKQYD 365 (569)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2234444444444444444
No 19
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=84.55 E-value=36 Score=34.19 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026674 105 IQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLER 158 (235)
Q Consensus 105 ~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~ 158 (235)
.+..++++|+..|..|-+.+..++.++..+..++. ....+...|+.++.++..
T Consensus 147 ~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~-~~~ee~e~L~~~~kel~~ 199 (546)
T PF07888_consen 147 ECQKEKEELLKENEQLEEEVEQLREEVERLEAELE-QEEEEMEQLKQQQKELTE 199 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666666666665552 233344445554444443
No 20
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.45 E-value=15 Score=26.90 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 026674 101 DQVKIQNNIRDELHRETLQIARDNLDKELRMIELRN 136 (235)
Q Consensus 101 ~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ 136 (235)
+-+..++..++.|...|..|.+.|-.+..+...++.
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445666667777777777777666665555444443
No 21
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.28 E-value=29 Score=32.88 Aligned_cols=27 Identities=7% Similarity=0.027 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 112 ELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 112 ~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
.++...++..+.+...+..|..-..++
T Consensus 218 klR~r~eeeme~~~aeq~slkRt~EeL 244 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQESLKRTEEEL 244 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333333333444444444444333444
No 22
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.76 E-value=39 Score=34.02 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=36.0
Q ss_pred HHHHHH-HhcCHHHHHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 80 VDELRK-LLADKDAYRQFLLSIDQVK-IQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 80 ~~EL~e-LL~d~d~l~~~v~~l~~vq-~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
..+... |-+|-.++.+|+.++.+.+ .+...++++..+++.--+++-..+.+..+||.++
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 6677888888988876654 3344555555555555555555555556666654
No 23
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=82.32 E-value=2.8 Score=40.87 Aligned_cols=55 Identities=18% Similarity=0.375 Sum_probs=40.6
Q ss_pred hcCCHHHHHHHH----------HHHHHHhH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 026674 165 KLYSPASLLKRI----------QEAMNKTE-EESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRA 219 (235)
Q Consensus 165 ~~~Sp~aL~~~L----------q~a~~eaE-eeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr 219 (235)
+.|.|+-+..|+ ..+....| ++.+.+++++..|+.+++||++++...|++--+..
T Consensus 282 E~F~P~R~asRILGMGDv~sLvEk~~~~~d~e~a~~~~~kl~~g~FtL~Df~~Ql~~m~kmGpl~~ 347 (451)
T COG0541 282 EPFHPDRFASRILGMGDVLSLIEKAEEVVDEEEAEKLAEKLKKGKFTLEDFLEQLEQMKKMGPLSK 347 (451)
T ss_pred CCcChHHHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHH
Confidence 578888777662 22222222 67899999999999999999999999998544433
No 24
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=81.74 E-value=29 Score=28.87 Aligned_cols=23 Identities=17% Similarity=0.405 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 026674 199 LDIGAFVQKYKKLRTTYHRRALV 221 (235)
Q Consensus 199 idvd~FL~qF~e~RklyH~Rr~K 221 (235)
.|+...+..|......||.+.+-
T Consensus 188 ~dlk~~l~~~~~~qi~~~~~~~~ 210 (218)
T cd07596 188 RDLKAALKEFARLQVQYAEKIAE 210 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888876543
No 25
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=81.62 E-value=42 Score=31.85 Aligned_cols=45 Identities=27% Similarity=0.360 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHH
Q 026674 145 ELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESEN 189 (235)
Q Consensus 145 el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~ 189 (235)
+|+.+-+++++..+++++-....+..+=+.+++.|+.++-+|-..
T Consensus 302 ~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 302 ELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQ 346 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444433
No 26
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=81.58 E-value=78 Score=33.69 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 026674 103 VKIQNNIRDELHRETLQIARDNLDKELRM 131 (235)
Q Consensus 103 vq~l~~~~e~l~~~N~~LAe~NL~~e~~L 131 (235)
.+......+.-.+++..+|++|++-+.+|
T Consensus 363 ~~~ql~~le~~~~e~q~~~qe~~~e~eqL 391 (980)
T KOG0980|consen 363 YENQLLALEGELQEQQREAQENREEQEQL 391 (980)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333344444555566666666555443
No 27
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=81.42 E-value=27 Score=32.70 Aligned_cols=49 Identities=24% Similarity=0.383 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHH
Q 026674 142 RTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENL 190 (235)
Q Consensus 142 ~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~L 190 (235)
+..+|.++-.+.+.+.+++++--...|..+-+.+++.+++++.++.-.|
T Consensus 306 rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~m 354 (384)
T KOG0972|consen 306 RTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTM 354 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhh
Confidence 4445666666666666677766677788888888888888888887665
No 28
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=80.96 E-value=30 Score=30.97 Aligned_cols=46 Identities=11% Similarity=0.115 Sum_probs=33.6
Q ss_pred HhccCCHHHHHHHhcCHHHHHHHHHhcHHHHHHHH-HHHHHHHHHHH
Q 026674 74 LLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNN-IRDELHRETLQ 119 (235)
Q Consensus 74 ~L~~LS~~EL~eLL~d~d~l~~~v~~l~~vq~l~~-~~e~l~~~N~~ 119 (235)
....|+++|+++|-.+-+.+-.++.++..-++.++ ..+.+.....+
T Consensus 36 ~q~~l~nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 36 TQMSLENEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEE 82 (230)
T ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999989899888876666555 44444444333
No 29
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=80.85 E-value=76 Score=34.46 Aligned_cols=42 Identities=29% Similarity=0.476 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 026674 172 LLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRT 213 (235)
Q Consensus 172 L~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~Rk 213 (235)
-+..+...+...+++.+++.+.+.+-+-.+...-.++.+.+.
T Consensus 240 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~ 281 (1163)
T COG1196 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELRE 281 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666654333233333333333333
No 30
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=79.51 E-value=60 Score=32.33 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026674 201 IGAFVQKYKKLRTTYHRR 218 (235)
Q Consensus 201 vd~FL~qF~e~RklyH~R 218 (235)
|+.-+.+|...|-.--++
T Consensus 412 lek~~~~~~sl~~~i~~~ 429 (622)
T COG5185 412 LEKTLRQYDSLIQNITRS 429 (622)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 566677777766554444
No 31
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=79.34 E-value=6.1 Score=38.23 Aligned_cols=53 Identities=19% Similarity=0.427 Sum_probs=39.3
Q ss_pred hcCCHHHHHHHH---------HHHHHHh--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 026674 165 KLYSPASLLKRI---------QEAMNKT--EEESENLHRQLLDRELDIGAFVQKYKKLRTTYHR 217 (235)
Q Consensus 165 ~~~Sp~aL~~~L---------q~a~~ea--EeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~ 217 (235)
..|+|+.+..+| -..+.+. +++.++++++...|+.+++||+++++..++.--+
T Consensus 282 ~~f~p~~~~~~iLg~gD~~~l~e~~~~~~~~~~~~~~~~~~~~~~f~l~d~~~q~~~~~kmG~~ 345 (428)
T TIGR00959 282 EPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAEKMKKGQFDLEDFLEQLRQIKKMGPL 345 (428)
T ss_pred ccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 578888887775 2222222 4457788999999999999999999998885444
No 32
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=78.97 E-value=6.7 Score=38.06 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 026674 184 EEESENLHRQLLDRELDIGAFVQKYKKLRTTY 215 (235)
Q Consensus 184 EeeSE~Lae~FL~Geidvd~FL~qF~e~Rkly 215 (235)
+++.+++++++..|..+++||+++++..+++-
T Consensus 305 ~~~~~~~~~~~~~~~f~l~d~~~q~~~~~kmG 336 (437)
T PRK00771 305 EEEEEKDVEKMMKGKFTLKDMYKQLEAMNKMG 336 (437)
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHhcC
Confidence 45678899999999999999999999998864
No 33
>PF09204 Colicin_immun: Bacterial self-protective colicin-like immunity; InterPro: IPR015287 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). Colicin D immunity protein (ImmD) inhibits the bactericidal activity of colicin D by binding to its tRNase catalytic domain []. This entry represents the structural domain of ImmD and related klebicin and microcin immunity proteins. ; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1V74_B 1TFO_B 1TFK_B.
Probab=78.53 E-value=2.4 Score=32.42 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHH
Q 026674 188 ENLHRQLLDRELDIGAFVQKYKKL 211 (235)
Q Consensus 188 E~Lae~FL~Geidvd~FL~qF~e~ 211 (235)
-.+|++|++|+|+-+.|-+.|.+.
T Consensus 6 i~la~~Fv~~~IsA~~Fse~y~e~ 29 (88)
T PF09204_consen 6 IELARSFVNGEISADEFSEAYIEL 29 (88)
T ss_dssp HHHHHHHHTTSS-HHHHHHHHH--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Confidence 368999999999999999999943
No 34
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=78.42 E-value=45 Score=32.83 Aligned_cols=100 Identities=20% Similarity=0.256 Sum_probs=62.6
Q ss_pred hccCCHHHHHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH--Hhhh----hhHHHHHHHHHhHHHH-HHHHH
Q 026674 75 LKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIAR--DNLD----KELRMIELRNQSKIIR-TTELA 147 (235)
Q Consensus 75 L~~LS~~EL~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe--~NL~----~e~~L~elR~ql~~~~-~~el~ 147 (235)
=+..+.+-+.++.+|-+-|...=.+|.. +++.++..+.+++..|- .||+ ..++|.++|.-+..+. ..||+
T Consensus 236 Qnk~akehv~km~kdle~Lq~aEqsl~d---lQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE 312 (575)
T KOG4403|consen 236 QNKKAKEHVNKMMKDLEGLQRAEQSLED---LQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELE 312 (575)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHH
Confidence 3455677777787776666665555444 44455555555555543 3333 2355666666442111 14788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026674 148 AAQEKLHDLERQKEQLLKLYSPASLLKRIQ 177 (235)
Q Consensus 148 ~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq 177 (235)
.|..++.+-++++..-+.-+-|.+|...||
T Consensus 313 ~lR~~L~kAEkele~nS~wsaP~aLQ~wLq 342 (575)
T KOG4403|consen 313 QLRVALEKAEKELEANSSWSAPLALQKWLQ 342 (575)
T ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHHH
Confidence 888888888888887777788889888776
No 35
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=78.28 E-value=28 Score=29.52 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 100 IDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKE 161 (235)
Q Consensus 100 l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~ 161 (235)
.+..+.+..+.+.+..++..|...|..++.++..+..++ ..+++.|..+..-++
T Consensus 96 ~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~--------~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 96 NPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRL--------STIEEDYQTLIDIMD 149 (161)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 345566666666677777777666666666555555433 455666666655444
No 36
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=77.92 E-value=22 Score=35.65 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=49.0
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 95 QFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLL 164 (235)
Q Consensus 95 ~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~ 164 (235)
+++.-.+...-++..++.+..++.+|-+.|..++.++..++.++. ..-.+|...++++..+..+.+.+.
T Consensus 130 DmLvV~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~-~l~~eL~~~~ee~e~L~~~~kel~ 198 (546)
T PF07888_consen 130 DMLVVTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVE-RLEAELEQEEEEMEQLKQQQKELT 198 (546)
T ss_pred ceEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556777788888888888888888888888888773 334567777777777777766554
No 37
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=76.82 E-value=7.7 Score=37.66 Aligned_cols=31 Identities=10% Similarity=0.258 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 026674 185 EESENLHRQLLDRELDIGAFVQKYKKLRTTY 215 (235)
Q Consensus 185 eeSE~Lae~FL~Geidvd~FL~qF~e~Rkly 215 (235)
++.+++++++..|+.+++||+++++..++.-
T Consensus 313 ~~~~~~~~k~~~~~f~l~D~~~q~~~i~kmG 343 (429)
T TIGR01425 313 DNEKALIEKLKEGTFTLRDMYEQFQNLLKMG 343 (429)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 4578899999999999999999999888754
No 38
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=76.75 E-value=47 Score=28.38 Aligned_cols=23 Identities=17% Similarity=0.479 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 026674 199 LDIGAFVQKYKKLRTTYHRRALV 221 (235)
Q Consensus 199 idvd~FL~qF~e~RklyH~Rr~K 221 (235)
.|+..-|..|......||.+-+.
T Consensus 206 ~d~k~~l~~~~~~~i~~~~~~~~ 228 (236)
T PF09325_consen 206 KDFKSMLEEYAESQIEYQKKMLE 228 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888999988888877665
No 39
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=75.07 E-value=40 Score=33.38 Aligned_cols=16 Identities=13% Similarity=0.567 Sum_probs=8.0
Q ss_pred HhccCCHHHHHHHhcC
Q 026674 74 LLKDKSVDELRKLLAD 89 (235)
Q Consensus 74 ~L~~LS~~EL~eLL~d 89 (235)
.|...|.+.+..++.+
T Consensus 393 ~lq~~t~~~i~~ml~~ 408 (507)
T PF05600_consen 393 ILQQQTAESIEEMLSA 408 (507)
T ss_pred HHHhcCHHHHHHHHHH
Confidence 3444555555555544
No 40
>PRK10867 signal recognition particle protein; Provisional
Probab=73.80 E-value=9.5 Score=37.01 Aligned_cols=51 Identities=22% Similarity=0.474 Sum_probs=37.2
Q ss_pred hcCCHHHHHHHHH---------HHHHH-h-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 026674 165 KLYSPASLLKRIQ---------EAMNK-T-EEESENLHRQLLDRELDIGAFVQKYKKLRTTY 215 (235)
Q Consensus 165 ~~~Sp~aL~~~Lq---------~a~~e-a-EeeSE~Lae~FL~Geidvd~FL~qF~e~Rkly 215 (235)
..|+|+.+..+|- ..+.+ . +++.+.+++++..|+.+++||+++++..++.-
T Consensus 283 e~f~p~~~~~~ilgmgD~~~l~e~~~~~~~~~~~~~~~~~~~~g~f~l~d~~~q~~~~~kmG 344 (433)
T PRK10867 283 EPFHPDRMASRILGMGDVLSLIEKAQEVVDEEKAEKLAKKLKKGKFDLEDFLEQLQQMKKMG 344 (433)
T ss_pred ccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 4677877776632 22222 1 33468899999999999999999999998753
No 41
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=73.37 E-value=73 Score=29.02 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHH---HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 172 LLKRIQEAMNKTEEESENLHR---QLLDRELDIGAFVQKYKKLRTTYHRRALVHLS 224 (235)
Q Consensus 172 L~~~Lq~a~~eaEeeSE~Lae---~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~a 224 (235)
+..-+..+..+.|+-=|..+. .|++.+++...++..|.+.-..||.+.+-.+-
T Consensus 176 lkeE~eea~~K~E~~kd~~~a~Mynfl~kE~e~a~~l~~lveaQ~~YHrqsl~~Le 231 (257)
T cd07620 176 LKEEEEECWRKLEQCKDQYSADLYHFATKEDSYANYFIRLLELQAEYHKNSLEFLD 231 (257)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333322 78889999999999999999999999887543
No 42
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=73.29 E-value=57 Score=28.97 Aligned_cols=7 Identities=29% Similarity=0.415 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 026674 92 AYRQFLL 98 (235)
Q Consensus 92 ~l~~~v~ 98 (235)
++-+|+.
T Consensus 101 YisGf~L 107 (216)
T KOG1962|consen 101 YISGFVL 107 (216)
T ss_pred HHhHHHH
Confidence 3333443
No 43
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=72.75 E-value=1e+02 Score=30.39 Aligned_cols=95 Identities=9% Similarity=0.130 Sum_probs=61.6
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 026674 91 DAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPA 170 (235)
Q Consensus 91 d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp~ 170 (235)
+.+++|+.+.+.+.++...+..+..-...+-+.-...+..|..+. .++..|+++-..+..+++ +..
T Consensus 4 ~si~dy~~e~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS--------~eI~~LQ~~S~~l~~~L~------Nrk 69 (508)
T PF04129_consen 4 ESIQDYLKESENFADLHNQIQECDSILESLEEMLSNFQNDLGSIS--------SEIRSLQERSSSLNVKLK------NRK 69 (508)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH------hHH
Confidence 467888988888888888777777666666543333444444333 355677777766666665 445
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcCCCC
Q 026674 171 SLLKRIQEAMNKTEEESENLHRQLLDRELD 200 (235)
Q Consensus 171 aL~~~Lq~a~~eaEeeSE~Lae~FL~Geid 200 (235)
++..+|..-+.+.= -+..|+....+|+++
T Consensus 70 ~~~~~L~~~i~~i~-ipP~lI~~I~~~~v~ 98 (508)
T PF04129_consen 70 AVEEKLSPFIDDIV-IPPDLIRSICEGPVN 98 (508)
T ss_pred HHHHHHHHHHHHHc-CCHHHHHhHhcCCCC
Confidence 55666666555554 667777777777766
No 44
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=72.04 E-value=1.3e+02 Score=31.17 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 026674 146 LAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLL 195 (235)
Q Consensus 146 l~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL 195 (235)
++.|..+|..++.+.+.|-.....+--...|+.++.++...||.+...+.
T Consensus 244 ~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver~~~ 293 (683)
T PF08580_consen 244 YERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVERSLS 293 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888888888888888888999999999999999988764
No 45
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=71.89 E-value=1.2e+02 Score=30.82 Aligned_cols=99 Identities=21% Similarity=0.301 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHH------------
Q 026674 127 KELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQL------------ 194 (235)
Q Consensus 127 ~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~F------------ 194 (235)
+-.+|.++|.+++ .-..+++...+.|.+|.++++.+-..-+-.+-..|+-.=++.....=++|.+=+
T Consensus 445 ~~~~ik~~r~~~k-~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~ 523 (594)
T PF05667_consen 445 KLQEIKELREEIK-EIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINS 523 (594)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666553 334567777777777778888777776766666665444333333333332211
Q ss_pred hcCCCC-----HHHHHHHHHHHHHHHHHHHH-HHHHhhhc
Q 026674 195 LDRELD-----IGAFVQKYKKLRTTYHRRAL-VHLSAKTH 228 (235)
Q Consensus 195 L~Geid-----vd~FL~qF~e~RklyH~Rr~-K~~a~~~~ 228 (235)
+.|.++ +|+-| |+..++--|.|++ |.+|..++
T Consensus 524 l~gkL~RtF~v~dEli--frdAKkDe~~rkaYK~La~lh~ 561 (594)
T PF05667_consen 524 LTGKLDRTFTVTDELI--FRDAKKDEAARKAYKLLASLHE 561 (594)
T ss_pred HHHHHHhHHHHHHHHH--HHHhhcCHHHHHHHHHHHHHHH
Confidence 234432 44443 7888887777655 45555543
No 46
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=71.57 E-value=69 Score=27.97 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 026674 102 QVKIQNNIRDELHRETLQIARDNLDKELRMIELR 135 (235)
Q Consensus 102 ~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR 135 (235)
++..+...++.+-..|..|++.+.++...+..+.
T Consensus 23 en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 23 ENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ 56 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666665555554
No 47
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=71.34 E-value=24 Score=31.77 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 110 RDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 110 ~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
.+++.++++.|-++|-+++.++++++..+
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erl 172 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERL 172 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666666666666666666655
No 48
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=71.34 E-value=60 Score=34.04 Aligned_cols=11 Identities=18% Similarity=0.335 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 026674 146 LAAAQEKLHDL 156 (235)
Q Consensus 146 l~~L~e~~~ek 156 (235)
|+.|.+++.+.
T Consensus 403 Lrilnqqlreq 413 (861)
T PF15254_consen 403 LRILNQQLREQ 413 (861)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 49
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=71.13 E-value=37 Score=28.68 Aligned_cols=11 Identities=9% Similarity=0.181 Sum_probs=4.7
Q ss_pred hHHHHHHHHHh
Q 026674 128 ELRMIELRNQS 138 (235)
Q Consensus 128 e~~L~elR~ql 138 (235)
..++++++.++
T Consensus 160 ~~ei~~lk~el 170 (192)
T PF05529_consen 160 SEEIEKLKKEL 170 (192)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 50
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=70.11 E-value=1.5e+02 Score=31.24 Aligned_cols=10 Identities=40% Similarity=0.262 Sum_probs=3.9
Q ss_pred HHHHHHHHHh
Q 026674 129 LRMIELRNQS 138 (235)
Q Consensus 129 ~~L~elR~ql 138 (235)
..+.+++.++
T Consensus 191 ~~~~~L~~q~ 200 (1164)
T TIGR02169 191 LIIDEKRQQL 200 (1164)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 51
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=69.52 E-value=25 Score=33.58 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=36.8
Q ss_pred ccCCHHHHHHHhcC-HHHHHHHHHhcHHHHHHHH-------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHH
Q 026674 76 KDKSVDELRKLLAD-KDAYRQFLLSIDQVKIQNN-------IRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELA 147 (235)
Q Consensus 76 ~~LS~~EL~eLL~d-~d~l~~~v~~l~~vq~l~~-------~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~ 147 (235)
.+++.|||++.|.+ +..=+..+..+-++++..- +.-.+++.++++. |-+.+++.-.+|.+| ++.+..|.
T Consensus 6 ~~~~LeeLe~kLa~~d~~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~Ie~~~--~~s~qeKFl~IR~Kl-leL~~~lQ 82 (379)
T PF11593_consen 6 PNLKLEELEEKLASNDNSKDSVMDKISEAQDSILPLRLQFNEFIQTMANIEEMN--NKSPQEKFLLIRSKL-LELYNKLQ 82 (379)
T ss_pred CCCcHHHHHHHHhcCCchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc--ccCHHHHHHHHHHHH-HHHHHHHH
Confidence 36899999998843 3333333333333333222 2222233333322 233444445666666 34444455
Q ss_pred HHHHHHHHH
Q 026674 148 AAQEKLHDL 156 (235)
Q Consensus 148 ~L~e~~~ek 156 (235)
.|-..|..|
T Consensus 83 ~lS~df~~L 91 (379)
T PF11593_consen 83 ELSSDFQKL 91 (379)
T ss_pred HHHHHHHHh
Confidence 444444443
No 52
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=69.12 E-value=54 Score=26.05 Aligned_cols=48 Identities=10% Similarity=0.103 Sum_probs=27.6
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 91 DAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 91 d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
+.|+.+..=-.++..+...+..|...+.+|-++|-.++-+-..||..+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERL 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433334555566666666666666666666666656666655
No 53
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=68.32 E-value=1e+02 Score=30.32 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 109 IRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 109 ~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
.+..+++.++.|-...+.++..|+.||.+.
T Consensus 159 ~vnKlm~ki~Klen~t~~kq~~leQLRre~ 188 (552)
T KOG2129|consen 159 FVNKLMNKIRKLENKTLLKQNTLEQLRREA 188 (552)
T ss_pred HHHHHHHHHHHhhhhhHHhhhhHHHHHHHH
Confidence 466788888888888888888888888765
No 54
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=68.29 E-value=7.9 Score=40.48 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=9.4
Q ss_pred HHhcCHHHHHHHHHhc
Q 026674 85 KLLADKDAYRQFLLSI 100 (235)
Q Consensus 85 eLL~d~d~l~~~v~~l 100 (235)
+=+.++|.|..+...+
T Consensus 651 dk~en~dlfakL~~~F 666 (1102)
T KOG1924|consen 651 DKLENDDLFAKLALKF 666 (1102)
T ss_pred hhccchHHHHHHHHHh
Confidence 3456667666665544
No 55
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=68.25 E-value=1.3e+02 Score=29.95 Aligned_cols=124 Identities=18% Similarity=0.205 Sum_probs=67.1
Q ss_pred hhhHHhccCCHHHHHHHhcC-HHHHHHHHHhcH----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH--HHH
Q 026674 70 GIIALLKDKSVDELRKLLAD-KDAYRQFLLSID----QVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSK--IIR 142 (235)
Q Consensus 70 ~~f~~L~~LS~~EL~eLL~d-~d~l~~~v~~l~----~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~--~~~ 142 (235)
.....|+.+..++.++.+++ .+.++.+...+. .-+........+...+..+.+.|-....+++.++.... ...
T Consensus 263 ~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e 342 (560)
T PF06160_consen 263 EALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNE 342 (560)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Confidence 45566777888888777766 556666665442 22333334455555666666666666777777776531 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhHHHHHHHHHH
Q 026674 143 TTELAAAQEKLHDLERQKEQLLKLYSP-ASLLKRIQEAMNKTEEESENLHRQ 193 (235)
Q Consensus 143 ~~el~~L~e~~~ek~~q~~~l~~~~Sp-~aL~~~Lq~a~~eaEeeSE~Lae~ 193 (235)
....+.+..++..+..++..+...... ...+..+.....+..+..+.|.+.
T Consensus 343 ~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~ 394 (560)
T PF06160_consen 343 LEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEE 394 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666644432222 222334444444444444444443
No 56
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.22 E-value=1.2e+02 Score=33.32 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=14.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHh
Q 026674 174 KRIQEAMNKTEEESENLHRQLL 195 (235)
Q Consensus 174 ~~Lq~a~~eaEeeSE~Lae~FL 195 (235)
..|...+..++.+++.|.+.+.
T Consensus 945 ~~le~~~~~~e~e~~~L~e~~~ 966 (1293)
T KOG0996|consen 945 SELEREIEDTEKELDDLTEELK 966 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666777777777764
No 57
>PRK05255 hypothetical protein; Provisional
Probab=68.17 E-value=76 Score=27.11 Aligned_cols=66 Identities=17% Similarity=0.274 Sum_probs=41.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhHH------HHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026674 161 EQLLKLYSPASLLKRIQEAMNKTEE------ESENLHRQLLD-RELDIGAFVQKYKKLRTTYHRRALVHLSAKT 227 (235)
Q Consensus 161 ~~l~~~~Sp~aL~~~Lq~a~~eaEe------eSE~Lae~FL~-Geidvd~FL~qF~e~RklyH~Rr~K~~a~~~ 227 (235)
..++...+++.|.+.|...-..... .-|.+-+.+++ |+-.|++|+..|-.. -.-|+|.+.+.|.+-
T Consensus 77 GKLmR~~d~e~I~~al~~~~~~~~~~~~~~h~lE~wRdrLi~~~d~al~e~~~~~P~~-DrQ~LRqLiR~A~kE 149 (171)
T PRK05255 77 GKLMRNEDVEPIRAALDKLKNKHNQETARFHKLERWRDRLLAEGDDALTEFLEEYPDA-DRQQLRQLIRNAKKE 149 (171)
T ss_pred HHHHhhCCHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHCchh-hHHHHHHHHHHHHHH
Confidence 3677777888887776554433333 34555556666 566699999999543 445667666655543
No 58
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=68.07 E-value=1.3e+02 Score=29.90 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=26.2
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 026674 178 EAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHR 217 (235)
Q Consensus 178 ~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~ 217 (235)
.....+..+-+.+...+-.|.++++.--.+|.+....|+.
T Consensus 448 ~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~ 487 (569)
T PRK04778 448 EMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVET 487 (569)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 3344556666667777767888877766677776665554
No 59
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=67.49 E-value=29 Score=33.87 Aligned_cols=49 Identities=20% Similarity=0.193 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 026674 146 LAAAQEKLHDLERQKEQ-LLKLYSPASLLKRIQEAMNKTEEESENLHRQL 194 (235)
Q Consensus 146 l~~L~e~~~ek~~q~~~-l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~F 194 (235)
++.++.+=..+.+++.+ ....+..+..+.+++..+.+.+++....-..|
T Consensus 185 ~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey 234 (447)
T KOG2751|consen 185 LKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREY 234 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444442 34566677777777777777777777776666
No 60
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=67.24 E-value=13 Score=37.34 Aligned_cols=35 Identities=29% Similarity=0.492 Sum_probs=17.2
Q ss_pred HHHHHHHhHHHHHHHHH---HHhcCCCCHHHHHHHHHH
Q 026674 176 IQEAMNKTEEESENLHR---QLLDRELDIGAFVQKYKK 210 (235)
Q Consensus 176 Lq~a~~eaEeeSE~Lae---~FL~Geidvd~FL~qF~e 210 (235)
....+.+.-++|..+.. .|+|-+++||.=|.-|++
T Consensus 347 kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 347 KDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHH
Confidence 33444444444444432 234555566666666654
No 61
>PRK10869 recombination and repair protein; Provisional
Probab=67.00 E-value=1.4e+02 Score=29.76 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=9.3
Q ss_pred CCCchhHhhhhHHhccCC
Q 026674 62 HVSPAEAAGIIALLKDKS 79 (235)
Q Consensus 62 ~~~p~~~~~~f~~L~~LS 79 (235)
++.|++...+-..++.|+
T Consensus 201 ~l~~gE~eeL~~e~~~L~ 218 (553)
T PRK10869 201 APQPGEFEQIDEEYKRLA 218 (553)
T ss_pred CCCCCcHHHHHHHHHHHH
Confidence 345555555555555444
No 62
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.88 E-value=1.2e+02 Score=31.13 Aligned_cols=22 Identities=23% Similarity=0.611 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 026674 173 LKRIQEAMNKTEEESENLHRQL 194 (235)
Q Consensus 173 ~~~Lq~a~~eaEeeSE~Lae~F 194 (235)
..+|.....+....-|.|..+|
T Consensus 483 I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 483 IERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554
No 63
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=66.40 E-value=49 Score=24.20 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 104 KIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQL 163 (235)
Q Consensus 104 q~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l 163 (235)
.+-...+..|+.+-+.|+...+.....|..||.++. +.=..+..+..+..........+
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~-e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIK-ELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456778888888888888888888888888773 22234555555555555544433
No 64
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=66.34 E-value=72 Score=28.84 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 101 DQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 101 ~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
|.+-+++...++++....++-+.|-++-.+++++..++
T Consensus 128 ~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ 165 (290)
T COG4026 128 PEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEY 165 (290)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555444433
No 65
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.17 E-value=89 Score=27.15 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=32.6
Q ss_pred HHHHHHHHHhHHHHHHHH-----------HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026674 174 KRIQEAMNKTEEESENLH-----------RQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAK 226 (235)
Q Consensus 174 ~~Lq~a~~eaEeeSE~La-----------e~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~a~~ 226 (235)
.++...+.+.+..-+.+. ++|+++ =|..|++.|+.|..=..++-++.
T Consensus 64 ~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~------dL~~~KE~rK~Fdk~se~yd~al 121 (200)
T cd07637 64 DKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKE------DVRKFKETKKQFDKVREDLEIAL 121 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777776 455443 25788899998888777654443
No 66
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=65.86 E-value=65 Score=31.61 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026674 197 RELDIGAFVQKYKKLRTTYHRRALVHLSAKT 227 (235)
Q Consensus 197 Geidvd~FL~qF~e~RklyH~Rr~K~~a~~~ 227 (235)
.+..++..+.+|.+--..-|+++++++-.++
T Consensus 144 ek~~lEq~leqeqef~vnKlm~ki~Klen~t 174 (552)
T KOG2129|consen 144 EKLPLEQLLEQEQEFFVNKLMNKIRKLENKT 174 (552)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3567888888888877778888888776554
No 67
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=65.73 E-value=85 Score=26.77 Aligned_cols=65 Identities=22% Similarity=0.379 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcC------CC--CHHHHHHHHHHHHHH
Q 026674 145 ELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDR------EL--DIGAFVQKYKKLRTT 214 (235)
Q Consensus 145 el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~G------ei--dvd~FL~qF~e~Rkl 214 (235)
.+..+..++.++..+.+++. ++|.- -.-..+...++.=|+...+|++- ++ .+++||++|+...+-
T Consensus 86 ~inE~t~k~~El~~~i~el~--~~~~K---s~~~~l~q~~~~~eEtv~~~ieqqk~~r~e~qk~~~~yv~~~k~~q~~ 158 (165)
T PF09602_consen 86 SINEWTDKLNELSAKIQELL--LSPSK---SSFSLLSQISKQYEETVKQLIEQQKLTREEWQKVLDAYVEQAKSSQKE 158 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHH--cchHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444 22311 11223445555555555666542 11 377888888776543
No 68
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=65.54 E-value=79 Score=26.32 Aligned_cols=16 Identities=6% Similarity=0.017 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHHHH
Q 026674 197 RELDIGAFVQKYKKLR 212 (235)
Q Consensus 197 Geidvd~FL~qF~e~R 212 (235)
|-+.+++.|+.+++..
T Consensus 117 g~~Gldeqi~~lkes~ 132 (155)
T PF06810_consen 117 GLKGLDEQIKALKESD 132 (155)
T ss_pred ccccHHHHHHHHHhcC
Confidence 4457999999988765
No 69
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=65.43 E-value=2.1e+02 Score=31.18 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 026674 171 SLLKRIQEAMNKTEEESENL 190 (235)
Q Consensus 171 aL~~~Lq~a~~eaEeeSE~L 190 (235)
+...+|+.....+++.-+++
T Consensus 780 ~~~~~l~~e~~~l~~l~~el 799 (1074)
T KOG0250|consen 780 AGREKLQGEISKLDALKEEL 799 (1074)
T ss_pred HHHHHHHHHHHHhhHHHHHH
Confidence 33444555555555544444
No 70
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=65.19 E-value=68 Score=25.47 Aligned_cols=33 Identities=9% Similarity=0.048 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 026674 105 IQNNIRDELHRETLQIARDNLDKELRMIELRNQ 137 (235)
Q Consensus 105 ~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~q 137 (235)
.+...++....++.+|+..+-.+...+..|+.+
T Consensus 20 ~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q 52 (107)
T PF09304_consen 20 SLERSLEDEKTSQGELAKQKDQLRNALQSLQAQ 52 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH
Confidence 344455555555555554444444444444433
No 71
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=65.14 E-value=1.1e+02 Score=27.99 Aligned_cols=59 Identities=17% Similarity=0.298 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 026674 145 ELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKK 210 (235)
Q Consensus 145 el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e 210 (235)
+...+.+......+++......+|..-+...|...+..+.+.-+.|... +++||+++-.
T Consensus 128 Eqqql~~sL~~r~~elk~~~~~~se~rv~~el~~K~~~~k~~~e~Ll~~-------LgeFLeeHfP 186 (268)
T PF11802_consen 128 EQQQLLESLNKRHEELKNQVETFSESRVFQELKTKIEKIKEYKEKLLSF-------LGEFLEEHFP 186 (268)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcCC
Confidence 3333444444444444455557888888888888888888887777654 5777776643
No 72
>PHA02562 46 endonuclease subunit; Provisional
Probab=64.93 E-value=1.4e+02 Score=28.98 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=13.8
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026674 125 LDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQ 159 (235)
Q Consensus 125 L~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q 159 (235)
-..+.+++.+.... .+...++..+..+|.++...
T Consensus 361 ~~l~~ei~~l~~~~-~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 361 KKVKAAIEELQAEF-VDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred HHHHHHHHHHHhhh-hchHHHHHHHHHHHHHHHHH
Confidence 33444444444433 12223444444444444443
No 73
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=64.92 E-value=37 Score=28.88 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHH
Q 026674 114 HRETLQIARDNLDKELRMIELRNQSK----IIRTTELAAAQEKLHDLERQK 160 (235)
Q Consensus 114 ~~~N~~LAe~NL~~e~~L~elR~ql~----~~~~~el~~L~e~~~ek~~q~ 160 (235)
-..+...|+.|.++..++.++|.++- .+.+...+.+..+++.+.++.
T Consensus 36 s~~~nkdakk~~q~~~ei~dmKqelnavs~qD~fAkwaRlnRKi~kl~~el 86 (175)
T KOG4253|consen 36 SRVGNKDAKKESQKVAEIQDMKQELNAVSMQDNFAKWARLNRKINKLDKEL 86 (175)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778899999999999998872 233334444444444444433
No 74
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=64.47 E-value=49 Score=26.03 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=26.1
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 92 AYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 92 ~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
.++.+..=-.++..+...+..|+..+..|-++|-.+.-+-..||..+
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332334555555666666666666666666665556666554
No 75
>PRK10869 recombination and repair protein; Provisional
Probab=63.78 E-value=1.2e+02 Score=30.33 Aligned_cols=38 Identities=5% Similarity=-0.053 Sum_probs=15.7
Q ss_pred ccCCHHHHHHHhc----CHHHHHHHHHhcHHHHHHHHHHHHH
Q 026674 76 KDKSVDELRKLLA----DKDAYRQFLLSIDQVKIQNNIRDEL 113 (235)
Q Consensus 76 ~~LS~~EL~eLL~----d~d~l~~~v~~l~~vq~l~~~~e~l 113 (235)
..+..+.-..||+ +...+..|-.....++.+...++.+
T Consensus 135 ~ll~~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l 176 (553)
T PRK10869 135 LLLKPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQH 176 (553)
T ss_pred HhcCHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554444443 2333444443333344433333333
No 76
>PRK10698 phage shock protein PspA; Provisional
Probab=63.59 E-value=1e+02 Score=27.02 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=20.1
Q ss_pred hhhHHhccCCHHHHHHHh---cCHH-HHHHHHHhc
Q 026674 70 GIIALLKDKSVDELRKLL---ADKD-AYRQFLLSI 100 (235)
Q Consensus 70 ~~f~~L~~LS~~EL~eLL---~d~d-~l~~~v~~l 100 (235)
++|..|.++=...+++++ .||. .++.|+.++
T Consensus 2 ~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em 36 (222)
T PRK10698 2 GIFSRFADIVNANINALLEKAEDPQKLVRLMIQEM 36 (222)
T ss_pred CHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHH
Confidence 467777777667777766 6777 555555543
No 77
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=63.42 E-value=70 Score=30.44 Aligned_cols=12 Identities=42% Similarity=0.697 Sum_probs=7.8
Q ss_pred HHHHHHHhcCHH
Q 026674 80 VDELRKLLADKD 91 (235)
Q Consensus 80 ~~EL~eLL~d~d 91 (235)
.+||+.+|.|++
T Consensus 16 ~~el~~~L~~p~ 27 (363)
T COG0216 16 YEELEALLSDPE 27 (363)
T ss_pred HHHHHHHhcCcc
Confidence 567777776663
No 78
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.13 E-value=2.1e+02 Score=30.44 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=9.6
Q ss_pred CHHHHHHHHHHHHHHHH
Q 026674 200 DIGAFVQKYKKLRTTYH 216 (235)
Q Consensus 200 dvd~FL~qF~e~RklyH 216 (235)
++|.|-.+-++.|..|.
T Consensus 564 eidi~n~qlkelk~~~~ 580 (1118)
T KOG1029|consen 564 EIDIFNNQLKELKEDVN 580 (1118)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 46666666655555443
No 79
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=63.10 E-value=2e+02 Score=30.10 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhc
Q 026674 172 LLKRIQEAMNKTEEESENLHRQLLD 196 (235)
Q Consensus 172 L~~~Lq~a~~eaEeeSE~Lae~FL~ 196 (235)
+....+..+.++..+++++..++-+
T Consensus 571 ~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 571 AEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666677777666643
No 80
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=62.96 E-value=44 Score=26.32 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 026674 101 DQVKIQNNIRDELHRETLQIARDNLDKELRMIELRN 136 (235)
Q Consensus 101 ~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ 136 (235)
.++..++..+..++.+|..|--+|-.+..+|.++..
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566667888888888888888888887777654
No 81
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=62.89 E-value=72 Score=29.67 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=20.1
Q ss_pred CCHHHHHHHhcCHHHHHHHHHh
Q 026674 78 KSVDELRKLLADKDAYRQFLLS 99 (235)
Q Consensus 78 LS~~EL~eLL~d~d~l~~~v~~ 99 (235)
+|.++|+-||.|++.-+.|+..
T Consensus 2 ~s~~~l~~llt~~eaw~~~~~~ 23 (313)
T PF05461_consen 2 VSREDLQLLLTEDEAWERFVAE 23 (313)
T ss_pred CCHHHHHHHHhhHHHHHHHHHh
Confidence 6899999999999999999985
No 82
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=62.76 E-value=1.1e+02 Score=26.95 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=34.6
Q ss_pred HHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026674 180 MNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKT 227 (235)
Q Consensus 180 ~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~a~~~ 227 (235)
+..+..+.|.|...+....-..++|...|-..|...+.=+.|=+.|+.
T Consensus 133 ~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQk 180 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQK 180 (202)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666655443445789999999999999998888877764
No 83
>PRK14127 cell division protein GpsB; Provisional
Probab=62.63 E-value=36 Score=27.02 Aligned_cols=44 Identities=20% Similarity=0.310 Sum_probs=23.6
Q ss_pred CHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 89 DKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 89 d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
|++.+++|+... ....+.+..+|..|-++|-.++.+|.+++.++
T Consensus 24 d~~EVD~FLd~V------~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 24 DQDEVDKFLDDV------IKDYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred CHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555432 22445555566666555555565666666554
No 84
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=62.62 E-value=77 Score=25.18 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 105 IQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 105 ~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
.+..+++.|.+.+..|-..|.+...++.+|..++
T Consensus 34 eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki 67 (107)
T PF09304_consen 34 ELAKQKDQLRNALQSLQAQNASRNQRIAELQAKI 67 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455778888888888888888888888888877
No 85
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.41 E-value=1.3e+02 Score=30.77 Aligned_cols=69 Identities=9% Similarity=0.086 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHhHHHHHHH---HHHH---hcCCCCHHHHHHHHHHHHH
Q 026674 144 TELAAAQEKLHDLERQKEQ---LLKLYSPASLLKRIQEAMNKTEEESENL---HRQL---LDRELDIGAFVQKYKKLRT 213 (235)
Q Consensus 144 ~el~~L~e~~~ek~~q~~~---l~~~~Sp~aL~~~Lq~a~~eaEeeSE~L---ae~F---L~Geidvd~FL~qF~e~Rk 213 (235)
..|..+..+|...+.+.-. -....-...++..|...+.++-+-|..+ ++.| +++ ..++++|.+|.+.+.
T Consensus 160 ~~~~~vr~~w~~~~~~~c~~fQ~~Ee~rl~~lk~~l~~~~~~is~~~~~~~q~~E~~k~~le~-~sv~~~i~~fv~~k~ 237 (611)
T KOG2398|consen 160 AKLEKVRKDWEQEMTDLCLKFQEIEESRLSFLKEELWLFANQISESCVKIDQVMEEFKLTLES-CSVDEDITKFVEAKG 237 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhcc-CCHHHHHHHHhhccC
Confidence 3345555555554442221 1122233445555555555554444333 3343 223 479999999987654
No 86
>PF07763 FEZ: FEZ-like protein; InterPro: IPR011680 This is a family of eukaryotic proteins thought to be involved in axonal outgrowth and fasciculation []. The N-terminal regions of these sequences are less conserved than the C-terminal regions, and are highly acidic []. The Caenorhabditis elegans homolog, UNC-76 (Q7JNU9 from SWISSPROT), may play structural and signalling roles in the control of axonal extension and adhesion (particularly in the presence of adjacent neuronal cells []) and these roles have also been postulated for other FEZ family proteins []. Certain homologs have been definitively found to interact with the N-terminal variable region (V1) of PKC-zeta, and this interaction causes cytoplasmic translocation of the FEZ family protein in mammalian neuronal cells []. The C-terminal region probably participates in the association with the regulatory domain of PKC-zeta []. The members of this family are predicted to form coiled-coil structures [, ], which may interact with members of the RhoA family of signalling proteins [], but are not thought to contain other characteristic protein motifs []. Certain members of this family are expressed almost exclusively in the brain, whereas others (such as FEZ2, Q76LN0 from SWISSPROT) are expressed in other tissues, and are thought to perform similar but unknown functions in these tissues [].
Probab=62.14 E-value=72 Score=28.87 Aligned_cols=72 Identities=29% Similarity=0.394 Sum_probs=42.4
Q ss_pred hhhHHhccCCHHHHHHHhcC-HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHH
Q 026674 70 GIIALLKDKSVDELRKLLAD-KDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAA 148 (235)
Q Consensus 70 ~~f~~L~~LS~~EL~eLL~d-~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~ 148 (235)
.....|+.||..+|.+|+.. +.++..|=..| |+.+- .|++| +.+. +.|+.- |..+.+.+.
T Consensus 163 ~~~e~L~~LS~seL~~ll~e~E~~Ir~ySEeL--V~qLA-~RDEL------------efEK---EvKN~F-IS~Ll~VQn 223 (244)
T PF07763_consen 163 SYEEGLRQLSLSELNELLEEMETAIREYSEEL--VQQLA-LRDEL------------EFEK---EVKNTF-ISLLLEVQN 223 (244)
T ss_pred CcHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHH------------HHHH---HHHHHH-HHHHHHHHH
Confidence 45568999999999999877 55666665554 33322 22222 2221 456655 555666666
Q ss_pred HHHHHHHHHHHH
Q 026674 149 AQEKLHDLERQK 160 (235)
Q Consensus 149 L~e~~~ek~~q~ 160 (235)
-+.++.+..++.
T Consensus 224 rqre~r~~~kkk 235 (244)
T PF07763_consen 224 RQREQRELAKKK 235 (244)
T ss_pred HHHHHHHHHHHh
Confidence 666665554433
No 87
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=62.12 E-value=39 Score=29.26 Aligned_cols=31 Identities=6% Similarity=0.130 Sum_probs=17.4
Q ss_pred CHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 026674 89 DKDAYRQFLLSIDQVKIQNNIRDELHRETLQ 119 (235)
Q Consensus 89 d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~ 119 (235)
|++.|..+...+..++.+...++.++..+.+
T Consensus 40 de~~lR~i~~~~~~~~~L~~Rk~~il~~i~e 70 (193)
T PF09371_consen 40 DEVQLREIQDRYEYLRELEKRKESILKSIEE 70 (193)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666666666655443
No 88
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=61.59 E-value=1.2e+02 Score=27.66 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026674 202 GAFVQKYKKLRTTYHRR 218 (235)
Q Consensus 202 d~FL~qF~e~RklyH~R 218 (235)
+.++.+|+-..-+-|.-
T Consensus 239 ~~Y~~kfRNl~yLe~ql 255 (267)
T PF10234_consen 239 EIYVEKFRNLDYLEHQL 255 (267)
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 44555555555444443
No 89
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=61.54 E-value=1.1e+02 Score=26.73 Aligned_cols=85 Identities=20% Similarity=0.239 Sum_probs=39.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHH
Q 026674 132 IELRNQSKIIRTTELAAAQEKLHDLERQKEQLLK--------LYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGA 203 (235)
Q Consensus 132 ~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~--------~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~ 203 (235)
..+|+++ |..+...+.+...|=.|..+|+.+-. ...-..|...|...+.+.+.+-..+-++.++-++...+
T Consensus 47 ~~lR~El-I~ELkqsKklydnYYkL~~KY~~LK~~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~e 125 (196)
T PF15272_consen 47 QQLRQEL-INELKQSKKLYDNYYKLYSKYQELKKSSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKE 125 (196)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455554 34444444444444444444443322 11112344445555555555555555555444444444
Q ss_pred HHHHHHHHHHHHHH
Q 026674 204 FVQKYKKLRTTYHR 217 (235)
Q Consensus 204 FL~qF~e~RklyH~ 217 (235)
.-..+...|..|-.
T Consensus 126 l~~~r~~e~~~Yes 139 (196)
T PF15272_consen 126 LQNERERERIAYES 139 (196)
T ss_pred HHhHHHHHHHHHHH
Confidence 44444445554443
No 90
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=61.51 E-value=1.1e+02 Score=26.52 Aligned_cols=73 Identities=23% Similarity=0.357 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHH
Q 026674 115 RETLQIARDNLDKELRMIELRNQSKIIRTT----ELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENL 190 (235)
Q Consensus 115 ~~N~~LAe~NL~~e~~L~elR~ql~~~~~~----el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~L 190 (235)
.+|..|.+-.-..+.++.+|+.++. .|. .|..++.++..+.+++..+. |- ...|.....+.+.|.++|
T Consensus 55 ~eN~~L~epL~~a~~e~~eL~k~L~--~y~kdK~~L~~~k~rl~~~ek~l~~Lk--~e----~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 55 QENKRLSEPLKKAEEEVEELRKQLK--NYEKDKQSLQNLKARLKELEKELKDLK--WE----HEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555442 122 13334444444444443322 11 233444555666666666
Q ss_pred HHHHh
Q 026674 191 HRQLL 195 (235)
Q Consensus 191 ae~FL 195 (235)
-.+|-
T Consensus 127 ~~kf~ 131 (201)
T PF13851_consen 127 YRKFE 131 (201)
T ss_pred HHHHH
Confidence 66664
No 91
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.43 E-value=1.1e+02 Score=26.50 Aligned_cols=116 Identities=14% Similarity=0.216 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HH-HHHHhcCCHHHHHHHHHHHH
Q 026674 103 VKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLER-QK-EQLLKLYSPASLLKRIQEAM 180 (235)
Q Consensus 103 vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~-q~-~~l~~~~Sp~aL~~~Lq~a~ 180 (235)
++.--..+..|-.++..|...+|++-|-=+.|...+ .+....+.+...+-+ +| ..++..-.++.|.+.|....
T Consensus 32 iKRd~~aLq~LGe~L~~L~~~~L~KiPL~E~L~~Ai-----~~aqri~~~~arrRQlQyIGKlmR~~DvepI~~~Ldkl~ 106 (187)
T COG3028 32 IKRDAEALQDLGEELVDLTKAALAKIPLDEDLLEAI-----ELAQRIKSEIARRRQLQYIGKLMRDRDVEPIRAALDKLR 106 (187)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHhhCCCChHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHh
Confidence 333334556666777788888888887555666544 234444444333222 11 26777789999988777665
Q ss_pred HHhHHHH------HHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 181 NKTEEES------ENLHRQLL-DRELDIGAFVQKYKKLRTTYHRRALVHLS 224 (235)
Q Consensus 181 ~eaEeeS------E~Lae~FL-~Geidvd~FL~qF~e~RklyH~Rr~K~~a 224 (235)
.....+- |.+-..++ +|..-+.+||.+|-..= .-|+|.+.+-|
T Consensus 107 ~~~~q~~a~lHklE~~RdrLia~GD~Alt~~l~~~P~aD-rq~LR~LvRna 156 (187)
T COG3028 107 NRHNQQVALLHKLEQLRDRLIAEGDGALTEFLNQYPDAD-RQQLRTLIRNA 156 (187)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHCCccc-HHHHHHHHHHH
Confidence 5554443 33344555 45777999999996532 23444444433
No 92
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=61.25 E-value=2e+02 Score=30.39 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 105 IQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 105 ~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
++.+.++.++.+|..+++.-.++..+|-+.|.+.
T Consensus 459 ellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~ 492 (861)
T PF15254_consen 459 ELLKVIENQKEENKRLRKMFQEKDQELLENKQQF 492 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3445566777788888887778888888888766
No 93
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=61.25 E-value=85 Score=25.22 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026674 145 ELAAAQEKLHDLERQKEQ 162 (235)
Q Consensus 145 el~~L~e~~~ek~~q~~~ 162 (235)
++..|+.++.++..+|+.
T Consensus 69 ~~~~L~~el~~l~~ry~t 86 (120)
T PF12325_consen 69 EVEELEQELEELQQRYQT 86 (120)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334555566666666653
No 94
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=60.97 E-value=1.3e+02 Score=29.79 Aligned_cols=11 Identities=45% Similarity=0.353 Sum_probs=4.4
Q ss_pred cCCHHHHHHHh
Q 026674 77 DKSVDELRKLL 87 (235)
Q Consensus 77 ~LS~~EL~eLL 87 (235)
.+..+.-.+||
T Consensus 140 l~~~~~~~~lL 150 (563)
T TIGR00634 140 LFRPDEQRQLL 150 (563)
T ss_pred hcCHHHHHHHH
Confidence 33444433333
No 95
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=60.34 E-value=1.1e+02 Score=26.40 Aligned_cols=85 Identities=7% Similarity=0.115 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 026674 102 QVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMN 181 (235)
Q Consensus 102 ~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~ 181 (235)
.++++...+..|+.+...+.-..|... ++. .+...+.++..|+.-+.+|+....+|..-. +.+ ...+.
T Consensus 69 ~l~el~~~~~~L~~q~~~~i~~pL~~F-----~k~-----dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~-K~K-~~~~~ 136 (200)
T cd07603 69 ALQEMNNFHTILLDQAQRTVSTQLQNF-----VKE-----DIKKVKESKKHFEKISDDLDNALVKNAQAP-RSK-PQEAE 136 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCC-HHHHH
Confidence 346666667777766555554444443 223 234567788888888888887666654333 234 45666
Q ss_pred HhHHHHHHHHHHHhcCC
Q 026674 182 KTEEESENLHRQLLDRE 198 (235)
Q Consensus 182 eaEeeSE~Lae~FL~Ge 198 (235)
+++.+-...-..|...-
T Consensus 137 Ea~~~L~~~Rk~f~~~s 153 (200)
T cd07603 137 EATNILTATRSCFRHTA 153 (200)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666665443
No 96
>PRK04863 mukB cell division protein MukB; Provisional
Probab=59.95 E-value=3e+02 Score=31.16 Aligned_cols=6 Identities=0% Similarity=0.069 Sum_probs=2.2
Q ss_pred CCHHHH
Q 026674 167 YSPASL 172 (235)
Q Consensus 167 ~Sp~aL 172 (235)
++.+-|
T Consensus 435 ~SdEeL 440 (1486)
T PRK04863 435 LTADNA 440 (1486)
T ss_pred CCHHHH
Confidence 333333
No 97
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=59.86 E-value=86 Score=26.65 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 026674 145 ELAAAQEKLHDLERQKEQLLK 165 (235)
Q Consensus 145 el~~L~e~~~ek~~q~~~l~~ 165 (235)
++..|..+....+..|..+..
T Consensus 126 e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 126 ELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666665543
No 98
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=59.45 E-value=1.1e+02 Score=25.86 Aligned_cols=88 Identities=15% Similarity=0.173 Sum_probs=53.2
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH-HHHHH
Q 026674 99 SIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASL-LKRIQ 177 (235)
Q Consensus 99 ~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL-~~~Lq 177 (235)
.|.-|.+-...+..+..+++.++. ....+++.+|..+- .--.+|+.|..-|..+++.|..+...|+.-.= ++.|-
T Consensus 57 ~LgrveEetkrLa~ireeLE~l~d---P~RkEv~~vRkkID-~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv 132 (159)
T PF04949_consen 57 QLGRVEEETKRLAEIREELEVLAD---PMRKEVEMVRKKID-SVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLV 132 (159)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555553 45667778887652 22357999999999999999988888876432 23333
Q ss_pred HHHHHhHHHHHHH
Q 026674 178 EAMNKTEEESENL 190 (235)
Q Consensus 178 ~a~~eaEeeSE~L 190 (235)
....++-.+|+.+
T Consensus 133 ~~L~eLv~eSE~~ 145 (159)
T PF04949_consen 133 TRLMELVSESERL 145 (159)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444455544
No 99
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=58.05 E-value=53 Score=27.94 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=38.5
Q ss_pred HHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 83 LRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 83 L~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
+.+|+.-++.|..-|..+...+.+...+..|.+++..|=+.-...-..|.+.+..|
T Consensus 4 ~~~L~~~d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L 59 (188)
T PF10018_consen 4 AEDLIEADDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKEL 59 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888888888888888888888877776554444444444444443
No 100
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=57.88 E-value=86 Score=24.24 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=30.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHH
Q 026674 175 RIQEAMNKTEEESENLHRQLLDRELD-IGAFVQKYKKLRTTYHRR 218 (235)
Q Consensus 175 ~Lq~a~~eaEeeSE~Lae~FL~Geid-vd~FL~qF~e~RklyH~R 218 (235)
..+..+.+.-.+-+.+....-.|+++ ...=++++...|+.||..
T Consensus 57 ~Y~~Gl~~li~~id~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk 101 (103)
T PF07361_consen 57 DYQEGLDKLIDQIDKAEALAEAGKLDEAKAALKKLDDLRKEYHKK 101 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhHh
Confidence 55555555555555555544457764 677899999999999975
No 101
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=57.09 E-value=1.3e+02 Score=26.03 Aligned_cols=65 Identities=20% Similarity=0.296 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HhcCCHHHHHHH---HHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 026674 146 LAAAQEKLHDLERQKEQL-LKLYSPASLLKR---IQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKK 210 (235)
Q Consensus 146 l~~L~e~~~ek~~q~~~l-~~~~Sp~aL~~~---Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e 210 (235)
|+.+..+..++.+++... ..+.+...+..+ +...+....-+.+.+..+|-.=+-+-|++-+.|..
T Consensus 64 L~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 64 LKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444421 122333344444 57778888888999999884322245555555544
No 102
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=56.96 E-value=75 Score=23.25 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 102 QVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 102 ~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
.|+..-..+..|..+|+.|-+.|-++..+-..|+.+.
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en 48 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELKEENEELKEEN 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3555566666777777777777776665555555544
No 103
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=56.47 E-value=1.3e+02 Score=25.80 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 026674 104 KIQNNIRDELHRETLQIARDNLDKELRMIELRNQS-----KIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLK 174 (235)
Q Consensus 104 q~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql-----~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~ 174 (235)
+......+.+.+++..+-..--+.+.+|+..+..- +...+.++..|+.++..+..++. ....++|+.+..
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~-~~~~~Dp~~i~~ 139 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE-KYSENDPEKIEK 139 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCHHHHHH
Confidence 34444555555555554444444444444443211 12345678888888888888887 445678886644
No 104
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=56.42 E-value=1.3e+02 Score=25.68 Aligned_cols=10 Identities=0% Similarity=0.365 Sum_probs=3.5
Q ss_pred hcCHHHHHHH
Q 026674 87 LADKDAYRQF 96 (235)
Q Consensus 87 L~d~d~l~~~ 96 (235)
.++.+.+..+
T Consensus 50 ~s~re~i~~l 59 (174)
T PF07426_consen 50 ASKRERIKEL 59 (174)
T ss_pred HcccHHHHHH
Confidence 3333333333
No 105
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=56.26 E-value=1.7e+02 Score=27.18 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=21.3
Q ss_pred HHHHhHHHHHHHHHHHhcCC-CCHHHHHHH
Q 026674 179 AMNKTEEESENLHRQLLDRE-LDIGAFVQK 207 (235)
Q Consensus 179 a~~eaEeeSE~Lae~FL~Ge-idvd~FL~q 207 (235)
...+.-+..+.|-++|..|+ ++.++|+==
T Consensus 259 ~~ee~kera~ei~EKfk~GekLt~EelllL 288 (294)
T COG1340 259 KREELKERAEEIYEKFKRGEKLTTEELLLL 288 (294)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 33344557889999999995 788888643
No 106
>PRK04863 mukB cell division protein MukB; Provisional
Probab=56.10 E-value=3.5e+02 Score=30.69 Aligned_cols=9 Identities=0% Similarity=0.482 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 026674 201 IGAFVQKYK 209 (235)
Q Consensus 201 vd~FL~qF~ 209 (235)
+.+++.+|.
T Consensus 440 Le~~LenF~ 448 (1486)
T PRK04863 440 AEDWLEEFQ 448 (1486)
T ss_pred HHHHHHHHH
Confidence 344444443
No 107
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=55.97 E-value=43 Score=33.23 Aligned_cols=109 Identities=20% Similarity=0.312 Sum_probs=71.0
Q ss_pred cCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHhhhhHHhccCCHHHHHHHhcCHH------HHHHH
Q 026674 25 YPPSVV--SPDSSRPATPSMSSFGSLNLQRPTEQSQPLSHVSPAEAAGIIALLKDKSVDELRKLLADKD------AYRQF 96 (235)
Q Consensus 25 ~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~L~~LS~~EL~eLL~d~d------~l~~~ 96 (235)
+|++++ +|.-+|++--..+|++ .|=++|.+..+. +.|+.++.|+. .|.-|
T Consensus 380 ~P~t~~sYIHRvGRTaRg~n~Gta-------------lSfv~P~e~~g~---------~~le~~~~d~~~~~~~qilqPY 437 (569)
T KOG0346|consen 380 FPETVTSYIHRVGRTARGNNKGTA-------------LSFVSPKEEFGK---------ESLESILKDENRQEGRQILQPY 437 (569)
T ss_pred CCCchHHHHHhccccccCCCCCce-------------EEEecchHHhhh---------hHHHHHHhhHHhhcCccccccc
Confidence 677776 7888888866666653 345577766554 56667776653 33334
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 97 LLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLL 164 (235)
Q Consensus 97 v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~ 164 (235)
=....+|..++-.-++.+.+.-..| =.+.++.++|+++. .-+.|+.-|++-..+++.+.
T Consensus 438 ~f~~eevesfryR~eD~~ravTkvA----vreaR~kEikqEll-----~SeKLK~~FeeNprdl~lLr 496 (569)
T KOG0346|consen 438 QFRMEEVESFRYRAEDALRAVTKVA----VREARLKEIKQELL-----NSEKLKAFFEENPRDLQLLR 496 (569)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-----hHHHHHHHHhcChHHHHHhh
Confidence 4455677777766677776666666 37888899998873 23567777777666666543
No 108
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=55.74 E-value=54 Score=24.96 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=10.0
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 026674 176 IQEAMNKTEEESENLHRQL 194 (235)
Q Consensus 176 Lq~a~~eaEeeSE~Lae~F 194 (235)
|...+.+.+++...+.+++
T Consensus 79 lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 79 LKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555443
No 109
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.01 E-value=3.3e+02 Score=30.08 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=30.4
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 026674 176 IQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRR 218 (235)
Q Consensus 176 Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~R 218 (235)
++..+.+.+.+.+.|..+. |+++.+.|-..+.+.+..+...
T Consensus 1026 ~~~~l~el~~eI~~l~~~~--~~~~~~~~~~e~~~l~~~~~~l 1066 (1311)
T TIGR00606 1026 RENELKEVEEELKQHLKEM--GQMQVLQMKQEHQKLEENIDLI 1066 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHH
Confidence 5777777777777777775 6678888888888877765443
No 110
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=54.82 E-value=2.7e+02 Score=29.08 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcC
Q 026674 172 LLKRIQEAMNKTEEESENLHRQLLDR 197 (235)
Q Consensus 172 L~~~Lq~a~~eaEeeSE~Lae~FL~G 197 (235)
+....+..+.++..+++.+.+++.++
T Consensus 566 a~~ea~~~~~~a~~~~~~~i~~lk~~ 591 (771)
T TIGR01069 566 LEKEAQEALKALKKEVESIIRELKEK 591 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555666777777777777776554
No 111
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=54.61 E-value=1.6e+02 Score=26.45 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=5.4
Q ss_pred hhHHHHHHHHHh
Q 026674 127 KELRMIELRNQS 138 (235)
Q Consensus 127 ~e~~L~elR~ql 138 (235)
++-+++++++++
T Consensus 50 ~~~e~e~le~qv 61 (239)
T COG1579 50 LEIELEDLENQV 61 (239)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 112
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=54.41 E-value=91 Score=23.46 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 026674 101 DQVKIQNNIRDELHRETLQIARDN 124 (235)
Q Consensus 101 ~~vq~l~~~~e~l~~~N~~LAe~N 124 (235)
+-|.-++.++++|+..|..|++.+
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~ 41 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777888888887777543
No 113
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=54.01 E-value=1.4e+02 Score=25.40 Aligned_cols=20 Identities=40% Similarity=0.426 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026674 144 TELAAAQEKLHDLERQKEQL 163 (235)
Q Consensus 144 ~el~~L~e~~~ek~~q~~~l 163 (235)
+|+..|+-+|..++.+...+
T Consensus 151 DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 114
>PRK03918 chromosome segregation protein; Provisional
Probab=53.81 E-value=2.7e+02 Score=28.73 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 026674 149 AQEKLHDLERQK 160 (235)
Q Consensus 149 L~e~~~ek~~q~ 160 (235)
+..++..+..++
T Consensus 664 l~~~~~~l~~~l 675 (880)
T PRK03918 664 LREEYLELSREL 675 (880)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 115
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=53.56 E-value=1.6e+02 Score=26.16 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=5.2
Q ss_pred HHHhHHHHHHHHHH
Q 026674 180 MNKTEEESENLHRQ 193 (235)
Q Consensus 180 ~~eaEeeSE~Lae~ 193 (235)
...+-++.+.+-..
T Consensus 90 y~~Lk~~in~~R~e 103 (230)
T PF10146_consen 90 YKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 116
>PF04751 DUF615: Protein of unknown function (DUF615); InterPro: IPR006839 The proteins in this entry are functionally uncharacterised. The entry contains the Escherichia coli (strain K12) protein YjgA (P0A8X0 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2P0T_A.
Probab=53.25 E-value=1.1e+02 Score=25.57 Aligned_cols=66 Identities=18% Similarity=0.342 Sum_probs=41.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhHHH------HHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026674 161 EQLLKLYSPASLLKRIQEAMNKTEEE------SENLHRQLLDRE-LDIGAFVQKYKKLRTTYHRRALVHLSAKT 227 (235)
Q Consensus 161 ~~l~~~~Sp~aL~~~Lq~a~~eaEee------SE~Lae~FL~Ge-idvd~FL~qF~e~RklyH~Rr~K~~a~~~ 227 (235)
..++...+++.|.+.|...-.....+ .|..-+.+++|. --+++|+..|-.. -.-|+|.+.+.|.+.
T Consensus 66 GKLmR~~d~e~I~~al~~~~~~~~~~~~~~h~lE~wRdrLi~~~~~al~e~~~~~p~~-D~Q~LRqLiR~a~ke 138 (157)
T PF04751_consen 66 GKLMREEDPEAIRAALDALKNKSQQETARFHRLERWRDRLIADDDSALTEFLAEYPDA-DRQQLRQLIRNARKE 138 (157)
T ss_dssp HHHGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHSTTS--HHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHCChh-hHHHHHHHHHHHHHH
Confidence 37888889999988877655444443 344445556554 4589999999655 455667766665543
No 117
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=52.35 E-value=2.3e+02 Score=27.51 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=30.5
Q ss_pred hccCCHHHHHHHhcCHHHHHHHHHhcHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHH
Q 026674 75 LKDKSVDELRKLLADKDAYRQFLLSIDQVK--IQNNIRDELHRETLQIARDNLDKELR 130 (235)
Q Consensus 75 L~~LS~~EL~eLL~d~d~l~~~v~~l~~vq--~l~~~~e~l~~~N~~LAe~NL~~e~~ 130 (235)
|+.++..--.-|..+-..+...+..+|.+- .....-+.|+..+.+.|++|-+++-+
T Consensus 250 Ld~~~y~ly~~l~~el~siRr~Cd~lP~~m~tKveelar~Lr~~I~~VarENs~LqrQ 307 (442)
T PF06637_consen 250 LDNLGYSLYHPLGPELESIRRTCDHLPKIMTTKVEELARSLRAGIERVARENSDLQRQ 307 (442)
T ss_pred hhcCCcccCCCCcchHHHHHHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHH
Confidence 444444333334455566777777777652 23334555566666666666655543
No 118
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=52.11 E-value=2e+02 Score=26.72 Aligned_cols=28 Identities=11% Similarity=0.019 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHHH--HHHHHHHHHH
Q 026674 197 RELDIGAFVQKYKKLRTT--YHRRALVHLS 224 (235)
Q Consensus 197 Geidvd~FL~qF~e~Rkl--yH~Rr~K~~a 224 (235)
|+.+||.=|++|...|.. -..|++|..-
T Consensus 213 G~g~LDvRLkKl~~eke~L~~qv~klk~qL 242 (302)
T PF09738_consen 213 GDGSLDVRLKKLADEKEELLEQVRKLKLQL 242 (302)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999987764 4667777443
No 119
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=52.07 E-value=2.2e+02 Score=27.21 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=23.2
Q ss_pred HHHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026674 82 ELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKE 128 (235)
Q Consensus 82 EL~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e 128 (235)
-+++|..+++-+..+..+ |++-+.+.++|..+|..|-..-+.-.
T Consensus 76 kirk~~e~~eglr~i~es---~~e~q~e~~qL~~qnqkL~nqL~~~~ 119 (401)
T PF06785_consen 76 KIRKITEKDEGLRKIRES---VEERQQESEQLQSQNQKLKNQLFHVR 119 (401)
T ss_pred HHHHHHhccHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344555555555555543 34444466666666666654443333
No 120
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.06 E-value=3.2e+02 Score=29.13 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=43.7
Q ss_pred HHHHhcH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 95 QFLLSID-QVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKE 161 (235)
Q Consensus 95 ~~v~~l~-~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~ 161 (235)
.|+.+++ .++.+...+..+-.+++++-+.+.+++-+.+++..+++ +...+...++++|..+..++.
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq-~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQ-DFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 3444433 44555556666666677777677777777777777773 456677778888888777776
No 121
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=51.90 E-value=1.8e+02 Score=26.09 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH---hcCCCCHHHHHHHHHH
Q 026674 172 LLKRIQEAMNKTEEESENLHRQL---LDRELDIGAFVQKYKK 210 (235)
Q Consensus 172 L~~~Lq~a~~eaEeeSE~Lae~F---L~Geidvd~FL~qF~e 210 (235)
.+..|...+.++-.+.......| ++-++.+|.=|..|+.
T Consensus 263 ~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 263 EIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444444444444333 3445555555666654
No 122
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=51.83 E-value=79 Score=30.68 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=43.5
Q ss_pred hhHHhccC----CHHHHHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026674 71 IIALLKDK----SVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKE 128 (235)
Q Consensus 71 ~f~~L~~L----S~~EL~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e 128 (235)
+.|.|+.| |.+-|+.|+.....|-.|... |+.++.++++|+.....||+-.|...
T Consensus 203 ~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~r---vqkvRDeLe~LLddd~Dma~mYLT~K 261 (414)
T KOG2662|consen 203 AYPLLDELTNKISTLNLERLRILKKRLTELTSR---VQKVRDELEELLDDDDDMAEMYLTRK 261 (414)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHhcChHHHHHHHHhHH
Confidence 34455544 677888888888888887766 77788899999999999998887766
No 123
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=51.66 E-value=2.3e+02 Score=27.26 Aligned_cols=29 Identities=7% Similarity=-0.056 Sum_probs=21.4
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 026674 92 AYRQFLLSIDQVKIQNNIRDELHRETLQI 120 (235)
Q Consensus 92 ~l~~~v~~l~~vq~l~~~~e~l~~~N~~L 120 (235)
....|-.++|.|+.++..++.+.....+.
T Consensus 266 l~~~y~~~hP~v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 266 LRLRYTDKHPDVIATKREIAQLEEQKEEE 294 (498)
T ss_pred HHHHhcccChHHHHHHHHHHHHHHHHHhh
Confidence 34466778899999888888888775543
No 124
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.42 E-value=65 Score=21.44 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 105 IQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 105 ~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
.+...-+.|.+.+..|.++|-.+..++..++..+
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666677777666666666666555543
No 125
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.31 E-value=1.4e+02 Score=24.66 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHhc
Q 026674 102 QVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRT-TELAAAQEKLHDLERQKEQLLKL 166 (235)
Q Consensus 102 ~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~-~el~~L~e~~~ek~~q~~~l~~~ 166 (235)
++..+...+.+|..++..|...+-.++.+|..++..+....+ ..+..+..++..+..+++.+.+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455555566666666666666666666666666665532222 33555666666666666655543
No 126
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=51.13 E-value=1.1e+02 Score=31.17 Aligned_cols=85 Identities=18% Similarity=0.289 Sum_probs=39.2
Q ss_pred CCCCCCCCCCCCCCchhHhhhhHHhccCCHHHHHHH-------------hcCHHHHHHHHHh-cH-HHHHHHHHHHHHHH
Q 026674 51 QRPTEQSQPLSHVSPAEAAGIIALLKDKSVDELRKL-------------LADKDAYRQFLLS-ID-QVKIQNNIRDELHR 115 (235)
Q Consensus 51 ~~~~~~~~~~~~~~p~~~~~~f~~L~~LS~~EL~eL-------------L~d~d~l~~~v~~-l~-~vq~l~~~~e~l~~ 115 (235)
+|.++. +-.+.+||.+.-.|..++...-..-.+-| -.|-.+|..|+.+ +. =|+.+.+.+-.+.+
T Consensus 311 TR~TDS-iTrPIpSpG~~~~i~~e~~e~e~~~v~fl~~fkp~pr~y~g~~~~~~~lk~flfee~~~lv~tli~lklaian 389 (727)
T PF05642_consen 311 TRQTDS-ITRPIPSPGEPQAIVREMGERERFIVQFLGDFKPTPRRYEGDRTNVEKLKKFLFEELKSLVNTLINLKLAIAN 389 (727)
T ss_pred cccCcc-ccCcCCCCCCccchhhhhchhhHHHHHHHHhcCCCCeeccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 454442 23366777765555555443332222211 1244566666642 11 12233333333333
Q ss_pred HHH----HHHHHhhhhhHHHHHHHH
Q 026674 116 ETL----QIARDNLDKELRMIELRN 136 (235)
Q Consensus 116 ~N~----~LAe~NL~~e~~L~elR~ 136 (235)
... .|-+.|-...++|.-|+.
T Consensus 390 d~veit~~l~kn~~~~~~rlkll~g 414 (727)
T PF05642_consen 390 DFVEITEKLKKNNKDHVPRLKLLKG 414 (727)
T ss_pred hHHHHhhhhccccccchhhhhhhcc
Confidence 333 333456677777777765
No 127
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=51.12 E-value=1.7e+02 Score=25.61 Aligned_cols=65 Identities=20% Similarity=0.077 Sum_probs=43.6
Q ss_pred HhccCCHHHHHHHh--cCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 74 LLKDKSVDELRKLL--ADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 74 ~L~~LS~~EL~eLL--~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
+|-..|.+||-.-| ..-+++..++..-.-+++++..+...+.+++.|-+.|-.++..-.+||.-|
T Consensus 12 ell~~skeel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 12 ELLRWSKEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777776655 334456666665555777777777777777777777777777666777655
No 128
>PRK14154 heat shock protein GrpE; Provisional
Probab=50.97 E-value=1.6e+02 Score=25.93 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=23.6
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 99 SIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 99 ~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
.+|.+..+...++.+..++.++-+..|-....++..|..+
T Consensus 50 ~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~ 89 (208)
T PRK14154 50 EFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRI 89 (208)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666555555555555555544
No 129
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=50.71 E-value=90 Score=22.31 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=23.7
Q ss_pred HHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 026674 179 AMNKTEEESENLHRQLLDRELDIGAFVQKYKKL 211 (235)
Q Consensus 179 a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~ 211 (235)
.-...|+--..|.+.|..|.|++|.||+.-+..
T Consensus 20 ed~AieDtiy~L~~al~~g~I~~d~~lK~vR~L 52 (65)
T PF09454_consen 20 EDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSL 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 334455555667888889999999999987764
No 130
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=50.67 E-value=2.7e+02 Score=27.72 Aligned_cols=44 Identities=9% Similarity=0.207 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 026674 169 PASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYH 216 (235)
Q Consensus 169 p~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH 216 (235)
...+...|...+.++-.--+++++.. . +|...++-|..-+.-.|
T Consensus 172 G~nir~ELl~l~~~LP~~~~~i~~~i--~--~l~~aie~Y~~f~~~~~ 215 (507)
T PF05600_consen 172 GENIREELLELVKELPSLFDEIVEAI--S--DLQEAIEYYQAFVEFVH 215 (507)
T ss_pred cchhHHHHHHHHHhhHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888887 2 38888999998888766
No 131
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=50.29 E-value=1.5e+02 Score=24.90 Aligned_cols=36 Identities=11% Similarity=0.334 Sum_probs=18.6
Q ss_pred HHHHHHHHHhHHHHHHH--HHHHhcCCC-CHHHHHHHHH
Q 026674 174 KRIQEAMNKTEEESENL--HRQLLDREL-DIGAFVQKYK 209 (235)
Q Consensus 174 ~~Lq~a~~eaEeeSE~L--ae~FL~Gei-dvd~FL~qF~ 209 (235)
.+|..-+..+|.-.-.+ |-.||.|++ +|...++.-+
T Consensus 115 ~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~ 153 (159)
T PF05384_consen 115 RNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQ 153 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455555555554443 556777754 3444444433
No 132
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=49.76 E-value=2e+02 Score=25.95 Aligned_cols=42 Identities=24% Similarity=0.491 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHH
Q 026674 171 SLLKRIQEAMNKTEEESENLHRQL--LDRELDIGAFVQKYKKLRT 213 (235)
Q Consensus 171 aL~~~Lq~a~~eaEeeSE~Lae~F--L~Geidvd~FL~qF~e~Rk 213 (235)
.+.+++..++.+++++-..+..+= |..+++ .+++..|-..|+
T Consensus 142 e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~-~ell~~yeri~~ 185 (239)
T COG1579 142 EAEARLEEEVAEIREEGQELSSKREELKEKLD-PELLSEYERIRK 185 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHh
Confidence 344455555555555444443321 222344 455666655443
No 133
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=49.57 E-value=2.9e+02 Score=27.77 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH-------hcCCCCHHHHHHHHHHH
Q 026674 171 SLLKRIQEAMNKTEEESENLHRQL-------LDRELDIGAFVQKYKKL 211 (235)
Q Consensus 171 aL~~~Lq~a~~eaEeeSE~Lae~F-------L~Geidvd~FL~qF~e~ 211 (235)
.++.+|+..+.+-|++-+.|-++- -...|+.++|-..-.+.
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Er 377 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQER 377 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 467788988888888887775542 22356777775544443
No 134
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=49.55 E-value=1.9e+02 Score=25.74 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=33.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHH
Q 026674 174 KRIQEAMNKTEEESENLHRQLLDREL-DIGAFVQKYKKLRTTYHRRALV 221 (235)
Q Consensus 174 ~~Lq~a~~eaEeeSE~Lae~FL~Gei-dvd~FL~qF~e~RklyH~Rr~K 221 (235)
.+-...+..+...-++....|-.-++ |+...+..|...=..||.+.+=
T Consensus 152 ~kas~~~~rt~~~Lee~i~~FEkqKl~DlK~i~sdFv~iEM~fHaKALE 200 (219)
T PF06730_consen 152 QKASVDATRTTKQLEETIDNFEKQKLKDLKKIFSDFVTIEMVFHAKALE 200 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555566666643344 7999999999999999999876
No 135
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=49.24 E-value=1e+02 Score=22.55 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHH------hHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHH
Q 026674 167 YSPASLLKRIQEAMNK------TEEESENLHRQLL---DRELDIGAFVQKYKKLRTTYHR 217 (235)
Q Consensus 167 ~Sp~aL~~~Lq~a~~e------aEeeSE~Lae~FL---~Geidvd~FL~qF~e~RklyH~ 217 (235)
.+..-|...|+..+.. .+++.+.|-..+= +|.|++++|+.=....=.-+|.
T Consensus 28 Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~~~ 87 (92)
T cd05025 28 LSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACNN 87 (92)
T ss_pred ECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 5777777777653332 4667777777762 5789999999876666666664
No 136
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=49.21 E-value=2.2e+02 Score=26.34 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026674 183 TEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKT 227 (235)
Q Consensus 183 aEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~a~~~ 227 (235)
+=+++=.+-+.+++.- .+-.-|+.|......||....+.+..-.
T Consensus 241 aTeeAv~~Mk~vl~~~-e~l~~Lk~lv~AQl~Yhk~aae~L~~~~ 284 (289)
T PF10455_consen 241 ATEEAVEVMKEVLDNS-EPLRLLKELVKAQLEYHKKAAEALSELL 284 (289)
T ss_pred HHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555543 4667789999999999999999887644
No 137
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=48.93 E-value=78 Score=24.03 Aligned_cols=32 Identities=13% Similarity=-0.011 Sum_probs=17.8
Q ss_pred hhhhHHhccCCHHHHHHHhcCHHHHHHHHHhc
Q 026674 69 AGIIALLKDKSVDELRKLLADKDAYRQFLLSI 100 (235)
Q Consensus 69 ~~~f~~L~~LS~~EL~eLL~d~d~l~~~v~~l 100 (235)
.+.-.........|...|.+.=|.|+..+..|
T Consensus 14 ~~~~~~~~e~~~~E~~~ins~LD~Lns~LD~L 45 (83)
T PF03670_consen 14 DGGEEEDDEFDEEEYAAINSMLDQLNSCLDHL 45 (83)
T ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666666555555555444
No 138
>smart00338 BRLZ basic region leucin zipper.
Probab=48.66 E-value=72 Score=22.14 Aligned_cols=35 Identities=9% Similarity=0.154 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 026674 101 DQVKIQNNIRDELHRETLQIARDNLDKELRMIELR 135 (235)
Q Consensus 101 ~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR 135 (235)
..+..+...+..|..+|..|....-.+..++..++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555443333333333333
No 139
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.30 E-value=2.8e+02 Score=28.53 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 026674 167 YSPASLLKRIQEAMNKTEEESENLHRQL 194 (235)
Q Consensus 167 ~Sp~aL~~~Lq~a~~eaEeeSE~Lae~F 194 (235)
...+..+.++|....+.+...+.....|
T Consensus 469 ~q~e~~lq~~q~~~~e~~~~~~~q~as~ 496 (634)
T KOG1818|consen 469 LQRESALQRNQSQEQELQMRMEQQEASV 496 (634)
T ss_pred cccccHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445556667777767666666666665
No 140
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=48.19 E-value=3e+02 Score=27.53 Aligned_cols=54 Identities=17% Similarity=0.422 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHHhHHHHHHHHHHHhcCCC
Q 026674 146 LAAAQEKLHDLERQKEQLLKLYSPAS----LLKRIQEAMNKTEEESENLHRQLLDREL 199 (235)
Q Consensus 146 l~~L~e~~~ek~~q~~~l~~~~Sp~a----L~~~Lq~a~~eaEeeSE~Lae~FL~Gei 199 (235)
+..+......+..+++.+..+|.... ....|...+...+..-+.+.+.+-++.+
T Consensus 315 l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~ 372 (560)
T PF06160_consen 315 LEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQV 372 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 55566666777778888888886654 5667888888888888888888777654
No 141
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=47.86 E-value=2.3e+02 Score=26.16 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhHHHHHHHHHHHh
Q 026674 144 TELAAAQEKLHDLERQKEQLLKLYSP-ASLLKRIQEAMNKTEEESENLHRQLL 195 (235)
Q Consensus 144 ~el~~L~e~~~ek~~q~~~l~~~~Sp-~aL~~~Lq~a~~eaEeeSE~Lae~FL 195 (235)
..+..|+.++.+++.++..+...|.+ .--...|+..+...+..-.+...+..
T Consensus 214 ~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~ 266 (362)
T TIGR01010 214 SLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLS 266 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677888888888888888877777 22333444444444444444444433
No 142
>PRK01294 lipase chaperone; Provisional
Probab=47.79 E-value=72 Score=29.92 Aligned_cols=12 Identities=25% Similarity=0.586 Sum_probs=7.3
Q ss_pred HHHHHHHHHhcH
Q 026674 90 KDAYRQFLLSID 101 (235)
Q Consensus 90 ~d~l~~~v~~l~ 101 (235)
.++|+-|+..+.
T Consensus 89 Rd~FDYfLs~~g 100 (336)
T PRK01294 89 RDFFDYFLSALG 100 (336)
T ss_pred HHHHHHHhhccC
Confidence 556777766443
No 143
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=47.22 E-value=5e+02 Score=30.37 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHH
Q 026674 101 DQVKIQNNIRDELHRETLQIA-------RDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQL-LKLYSPASL 172 (235)
Q Consensus 101 ~~vq~l~~~~e~l~~~N~~LA-------e~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l-~~~~Sp~aL 172 (235)
.++++++..+++....+.++. +.+-..+.+++++|..+. ....+-+.+..++.++..+...+ ..+-+..+.
T Consensus 1639 ~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~-~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~ 1717 (1930)
T KOG0161|consen 1639 AQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLE-ALERARRQAELELEELAERVNELNAQNSSLTAE 1717 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHhhcccchhhH
Confidence 455555555555555555554 344455555666665442 11122344555555555555543 334555566
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 026674 173 LKRIQEAMNKTEEESENLHR 192 (235)
Q Consensus 173 ~~~Lq~a~~eaEeeSE~Lae 192 (235)
..+|-..+..++++-++...
T Consensus 1718 KrklE~~i~~l~~elee~~~ 1737 (1930)
T KOG0161|consen 1718 KRKLEAEIAQLQSELEEEQS 1737 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66665555555555444433
No 144
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=47.03 E-value=58 Score=29.84 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=35.7
Q ss_pred HhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 86 LLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 86 LL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
|-+-+.+=.-+...|+-++.+.+.+..+...|.+|+-.-..+...+.++|+++
T Consensus 212 lrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V 264 (279)
T KOG0837|consen 212 LRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKV 264 (279)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33445566677778888888888888888888888754444445555555544
No 145
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=46.98 E-value=1.1e+02 Score=22.42 Aligned_cols=51 Identities=12% Similarity=0.236 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHH-h-----HHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHH
Q 026674 167 YSPASLLKRIQEAMNK-T-----EEESENLHRQL---LDRELDIGAFVQKYKKLRTTYHR 217 (235)
Q Consensus 167 ~Sp~aL~~~Lq~a~~e-a-----EeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH~ 217 (235)
.+.+-|...|...... . +++-+.+-..| -+|.|+.++|+.-+...-+-||.
T Consensus 27 Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~~~~ 86 (88)
T cd05030 27 LYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVAAHE 86 (88)
T ss_pred CCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHHhcc
Confidence 4555555555432211 2 56666666665 36889999999999999888885
No 146
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=46.91 E-value=1.2e+02 Score=22.52 Aligned_cols=49 Identities=12% Similarity=0.253 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHhHHHHHHHHHH
Q 026674 145 ELAAAQEKLHDLERQKEQLLKLY---SPASLLKRIQEAMNKTEEESENLHRQ 193 (235)
Q Consensus 145 el~~L~e~~~ek~~q~~~l~~~~---Sp~aL~~~Lq~a~~eaEeeSE~Lae~ 193 (235)
|+..++.+|.++..+|+.+.... --..|...|...+...|..++.|..-
T Consensus 25 E~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 25 EFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544444443322 33566777888888888888888654
No 147
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=46.64 E-value=2.4e+02 Score=26.07 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 102 QVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 102 ~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
+++.+..+.+.+..+.+.|-.++-+...+|..+..+.
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555665555555555555555555443
No 148
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=46.46 E-value=1.9e+02 Score=32.16 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=44.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHH
Q 026674 129 LRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLK-LYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQK 207 (235)
Q Consensus 129 ~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~-~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~q 207 (235)
..+++||.++ ..+.+.+-..+..+..|.+ .+.-..-+.-||.....+..-..+|.++| .+|.-.+|+--
T Consensus 1232 ~~~~~lr~~l--------~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~--~~ik~sdi~GA 1301 (1758)
T KOG0994|consen 1232 SATESLRRQL--------QALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQL--EKIKESDILGA 1301 (1758)
T ss_pred HHHHHHHHHH--------HHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH--HHhhccCchhH
Confidence 3345566555 2333333334444444332 23334446667777777777777777775 23444566667
Q ss_pred HHHHHHHHHHH
Q 026674 208 YKKLRTTYHRR 218 (235)
Q Consensus 208 F~e~RklyH~R 218 (235)
|--.|+-|.+-
T Consensus 1302 ~~~~r~a~~~s 1312 (1758)
T KOG0994|consen 1302 FNSTRHAYEQS 1312 (1758)
T ss_pred HHHHHHHHHHH
Confidence 77777665543
No 149
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=46.22 E-value=1.7e+02 Score=24.15 Aligned_cols=12 Identities=42% Similarity=0.404 Sum_probs=6.4
Q ss_pred HhccCCHHHHHH
Q 026674 74 LLKDKSVDELRK 85 (235)
Q Consensus 74 ~L~~LS~~EL~e 85 (235)
.|-.||+-||..
T Consensus 28 ~LvsmSVReLNr 39 (135)
T KOG4196|consen 28 ELVSMSVRELNR 39 (135)
T ss_pred HHHHhhHHHHHH
Confidence 444555555554
No 150
>PRK09039 hypothetical protein; Validated
Probab=46.06 E-value=2.6e+02 Score=26.21 Aligned_cols=11 Identities=18% Similarity=0.552 Sum_probs=4.1
Q ss_pred HHHHHHHhHHH
Q 026674 176 IQEAMNKTEEE 186 (235)
Q Consensus 176 Lq~a~~eaEee 186 (235)
|+.++..+++.
T Consensus 156 le~~L~~ae~~ 166 (343)
T PRK09039 156 LEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 151
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=45.80 E-value=84 Score=28.00 Aligned_cols=21 Identities=14% Similarity=0.370 Sum_probs=9.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHh
Q 026674 118 LQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 118 ~~LAe~NL~~e~~L~elR~ql 138 (235)
.++.++|..++.++.+++.++
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~ 92 (276)
T PRK13922 72 FDLREENEELKKELLELESRL 92 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 152
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=45.47 E-value=3.8e+02 Score=28.07 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=6.9
Q ss_pred HHHHHHHHHhHHHHHHH
Q 026674 174 KRIQEAMNKTEEESENL 190 (235)
Q Consensus 174 ~~Lq~a~~eaEeeSE~L 190 (235)
..++..+.+...+-+.+
T Consensus 436 ~~~~~~~~~~~~~~~~l 452 (1179)
T TIGR02168 436 KELQAELEELEEELEEL 452 (1179)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 153
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=45.03 E-value=1.4e+02 Score=22.81 Aligned_cols=78 Identities=14% Similarity=0.140 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHH
Q 026674 107 NNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEE 186 (235)
Q Consensus 107 ~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEee 186 (235)
.....-|.+-|...+.+.......+..++..+ ..+...+.++....++.+.| +.=...|...|.+.|+=
T Consensus 20 ~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~-----~~l~~k~~~l~~~l~~Id~I------e~~V~~LE~~v~~LD~y 88 (99)
T PF10046_consen 20 NEDYNLLENMNKATSLKYKKMKDIAAGLEKNL-----EDLNQKYEELQPYLQQIDQI------EEQVTELEQTVYELDEY 88 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 33444455566666655555555555555433 22333333333333344433 33467888999999999
Q ss_pred HHHHHHHHh
Q 026674 187 SENLHRQLL 195 (235)
Q Consensus 187 SE~Lae~FL 195 (235)
|..|..+|-
T Consensus 89 sk~LE~k~k 97 (99)
T PF10046_consen 89 SKELESKFK 97 (99)
T ss_pred HHHHHHHhh
Confidence 999988874
No 154
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=44.16 E-value=2e+02 Score=24.53 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=10.3
Q ss_pred hhHHhccCCHHHHHHHh
Q 026674 71 IIALLKDKSVDELRKLL 87 (235)
Q Consensus 71 ~f~~L~~LS~~EL~eLL 87 (235)
+|..|..+=...+.+++
T Consensus 2 lf~Rl~~~~~a~~~~~l 18 (221)
T PF04012_consen 2 LFKRLKTLVKANINELL 18 (221)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55666666556666665
No 155
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=43.49 E-value=2.2e+02 Score=24.81 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=15.9
Q ss_pred CCHHHHHHHh-cCHHHHHHHHHh
Q 026674 78 KSVDELRKLL-ADKDAYRQFLLS 99 (235)
Q Consensus 78 LS~~EL~eLL-~d~d~l~~~v~~ 99 (235)
+..+.|...| +|++.+..|+..
T Consensus 136 iD~~kl~~Al~~np~~V~~lF~~ 158 (239)
T PF07195_consen 136 IDETKLDKALAENPDAVQALFAG 158 (239)
T ss_pred EeHHHHHHHHhhCHHHHHHHHcc
Confidence 3566677755 688888888765
No 156
>PRK03918 chromosome segregation protein; Provisional
Probab=43.48 E-value=3.9e+02 Score=27.58 Aligned_cols=19 Identities=11% Similarity=0.312 Sum_probs=8.5
Q ss_pred CHHHHHHHhcCHHHHHHHH
Q 026674 79 SVDELRKLLADKDAYRQFL 97 (235)
Q Consensus 79 S~~EL~eLL~d~d~l~~~v 97 (235)
+-.++..|+.++.....++
T Consensus 133 ~Qg~~~~~~~~~~~r~~~~ 151 (880)
T PRK03918 133 RQGEIDAILESDESREKVV 151 (880)
T ss_pred eccchHHHhcCcHHHHHHH
Confidence 4445555554444433333
No 157
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=43.23 E-value=1.3e+02 Score=29.29 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=14.0
Q ss_pred HHHHHHh-cCHHHHHHHHHh
Q 026674 81 DELRKLL-ADKDAYRQFLLS 99 (235)
Q Consensus 81 ~EL~eLL-~d~d~l~~~v~~ 99 (235)
+.|.+.| +|++.+..|+..
T Consensus 360 ~kl~~al~~np~~V~~lF~~ 379 (462)
T PRK08032 360 DKLTKALKEDPAGVKALFVG 379 (462)
T ss_pred HHHHHHHHHCHHHHHHHhCC
Confidence 3477766 779998888853
No 158
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=43.04 E-value=1.3e+02 Score=22.34 Aligned_cols=52 Identities=23% Similarity=0.295 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHH----HHHhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHH
Q 026674 166 LYSPASLLKRIQEA----MNKTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYHR 217 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a----~~eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH~ 217 (235)
..+.+-|...|... ..-.+++.+++-+.+ -+|.|++++|+.--...-..||.
T Consensus 28 ~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~~~~ 86 (88)
T cd05029 28 TLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALIYNE 86 (88)
T ss_pred EECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHhh
Confidence 34566666666531 123566777776665 25789999999887777777774
No 159
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=42.24 E-value=1.4e+02 Score=22.00 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHHHHH------HHhHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 166 LYSPASLLKRIQEAM------NKTEEESENLHRQLL---DRELDIGAFVQKYKKLRTTYHRRALVHL 223 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a~------~eaEeeSE~Lae~FL---~Geidvd~FL~qF~e~RklyH~Rr~K~~ 223 (235)
..+.+-|...|...+ ...+++.+.+...|= +|.|++++|+.-+...-...|.-..|+.
T Consensus 26 ~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~~~~~~~~~~ 92 (94)
T cd05031 26 TLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIACEEYYVKHM 92 (94)
T ss_pred eECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466777777766422 235667777777762 5789999999988888888888777764
No 160
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=42.22 E-value=1.8e+02 Score=25.83 Aligned_cols=61 Identities=30% Similarity=0.410 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 026674 131 MIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDR 197 (235)
Q Consensus 131 L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~G 197 (235)
++|||..+ .-..-||..++..-.+-.++++ ..-..|++.|..++.|=||-=+.+-.-.++.
T Consensus 3 ~EELRq~L-l~TTlELE~~k~~A~EElRk~e-----eqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~ 63 (214)
T PF07795_consen 3 MEELRQKL-LYTTLELEATKMEANEELRKRE-----EQIAHLKDLLKKAYQERDEAREQLQKLLLEK 63 (214)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 161
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=42.07 E-value=2.6e+02 Score=25.18 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026674 187 SENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKT 227 (235)
Q Consensus 187 SE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~a~~~ 227 (235)
...=+=.|+..+.+.-.++..|.+.-..||.+.+-.+-.-.
T Consensus 183 ~~~dm~~~l~~e~e~~~~l~~lv~aQ~eYHr~a~e~Le~~~ 223 (246)
T cd07618 183 LAADMYNFASKEGEYAKFFVLLLEAQADYHRKALAVIEKVL 223 (246)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334467888889999999999999999999987655443
No 162
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.61 E-value=2.6e+02 Score=24.93 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 200 DIGAFVQKYKKLRTTYHRRALVHL 223 (235)
Q Consensus 200 dvd~FL~qF~e~RklyH~Rr~K~~ 223 (235)
|+..-|.+|......||.+.++.+
T Consensus 201 dl~~~l~ey~~~~ie~erk~l~~l 224 (230)
T cd07625 201 DLQSAIREYTLRKIEYERKKLSLL 224 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788999999988888887743
No 163
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=41.44 E-value=1.9e+02 Score=23.26 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 026674 146 LAAAQEKLHDLERQKEQLLKL 166 (235)
Q Consensus 146 l~~L~e~~~ek~~q~~~l~~~ 166 (235)
++....++..+..+++++..+
T Consensus 63 ~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 63 LRALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445455444444
No 164
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=40.99 E-value=2.6e+02 Score=24.92 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC
Q 026674 143 TTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRE 198 (235)
Q Consensus 143 ~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Ge 198 (235)
+-++..+.|....-...|+++.+.|....++.+++..+.+.-++|+.|+...+.|+
T Consensus 178 ~~~a~Dl~E~~~as~~~y~~l~~~f~~~~~l~~~~~~l~~~a~~l~~ia~ai~~~~ 233 (284)
T PF12805_consen 178 FFEAVDLFERALASHYDYEELREQFKHSDVLFRFQRLLEQLAQALRQIAQAILRGR 233 (284)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34445555555555557888888899889999999999999999999999988664
No 165
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.77 E-value=3.7e+02 Score=26.89 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhHHH
Q 026674 154 HDLERQKEQLLK-LYSPASLLKRIQEAMNKTEEE 186 (235)
Q Consensus 154 ~ek~~q~~~l~~-~~Sp~aL~~~Lq~a~~eaEee 186 (235)
++++.+++.|.. --.|.-+..||......+...
T Consensus 414 E~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~r~q 447 (508)
T KOG3091|consen 414 EELRAKLDTLLAQLNAPNQLKARLDELYEILRMQ 447 (508)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhh
Confidence 345666665433 336777788877666655555
No 166
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=40.74 E-value=3.8e+02 Score=26.71 Aligned_cols=87 Identities=18% Similarity=0.241 Sum_probs=51.2
Q ss_pred HHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCH
Q 026674 92 AYRQFLLSIDQV-KIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLER-QKEQLLKLYSP 169 (235)
Q Consensus 92 ~l~~~v~~l~~v-q~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~-q~~~l~~~~Sp 169 (235)
+|++.+..|-+. +..+..+.+|.-.|.-|+...-+++ +...|.++- ++=+..|++..++|.. +|.-|..+-.-
T Consensus 314 aLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ--~k~~kQqvf---vDiinkLk~niEeLIedKY~viLEKnd~ 388 (527)
T PF15066_consen 314 ALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQ--MKITKQQVF---VDIINKLKENIEELIEDKYRVILEKNDI 388 (527)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHH--HHhhhhhHH---HHHHHHHHHHHHHHHHhHhHhhhhhhhH
Confidence 344455544333 2333355556666666655444444 334455552 3346778888888765 77778888777
Q ss_pred HHHHHHHHHHHHHh
Q 026674 170 ASLLKRIQEAMNKT 183 (235)
Q Consensus 170 ~aL~~~Lq~a~~ea 183 (235)
+..+..|+.+.+..
T Consensus 389 ~k~lqnLqe~la~t 402 (527)
T PF15066_consen 389 EKTLQNLQEALANT 402 (527)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666544
No 167
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=40.73 E-value=44 Score=33.61 Aligned_cols=68 Identities=22% Similarity=0.292 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh----HHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHH
Q 026674 144 TELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKT----EEESENLHRQLL---DRELDIGAFVQKYKKLRTTY 215 (235)
Q Consensus 144 ~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~ea----EeeSE~Lae~FL---~Geidvd~FL~qF~e~Rkly 215 (235)
.|+..|+++|..+..+- ...+...|...+..+..-. +++-+++-..+. +|++++++|+.-|...+...
T Consensus 16 ~El~~l~~kF~~~d~~~----G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~~ 90 (627)
T KOG0046|consen 16 EELRELKEKFNKLDDQK----GYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSKD 90 (627)
T ss_pred HHHHHHHHHHHhhcCCC----CeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhhh
Confidence 47777888777665322 2344455555555554444 566666555542 68999999999888776543
No 168
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=40.64 E-value=67 Score=25.00 Aligned_cols=36 Identities=8% Similarity=-0.035 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 026674 101 DQVKIQNNIRDELHRETLQIARDNLDKELRMIELRN 136 (235)
Q Consensus 101 ~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ 136 (235)
-.+.+++..++.+..+|..+..+|-.+..++..+++
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 356777778888888888888888888888777776
No 169
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=40.51 E-value=1.3e+02 Score=25.06 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=10.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHh
Q 026674 174 KRIQEAMNKTEEESENLHRQLL 195 (235)
Q Consensus 174 ~~Lq~a~~eaEeeSE~Lae~FL 195 (235)
++|+..+.++++|=+++.+...
T Consensus 69 aKl~Rk~~kl~~el~~~~~~~~ 90 (161)
T PF04420_consen 69 AKLNRKLDKLEEELEKLNKSLS 90 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 170
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=40.42 E-value=3e+02 Score=25.37 Aligned_cols=14 Identities=0% Similarity=0.014 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 026674 201 IGAFVQKYKKLRTT 214 (235)
Q Consensus 201 vd~FL~qF~e~Rkl 214 (235)
...+..+-.+..+.
T Consensus 253 k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 253 KQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 171
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=40.36 E-value=2.6e+02 Score=28.60 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHhccCCHHHHHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-----------HHHHHHHHhHHH
Q 026674 73 ALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKEL-----------RMIELRNQSKII 141 (235)
Q Consensus 73 ~~L~~LS~~EL~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~-----------~L~elR~ql~~~ 141 (235)
+.+..|-....+-...=-+....|-.++|.|+.++..++++..++.+....-+..-. .|...-+++ ..
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~-~~ 366 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQL-KA 366 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 026674 142 RTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEA 179 (235)
Q Consensus 142 ~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a 179 (235)
++..+...+.+|.+++.+.+...+.| +.++.+++.+
T Consensus 367 ~~~~~~~~~~e~~~L~Re~~~~~~~Y--~~ll~r~~e~ 402 (754)
T TIGR01005 367 ASAQAGEQQVDLDALQRDAAAKRQLY--ESYLTNYRQA 402 (754)
T ss_pred HHHhCcHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
No 172
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=40.28 E-value=2.7e+02 Score=24.85 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=30.2
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026674 192 RQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKT 227 (235)
Q Consensus 192 e~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~a~~~ 227 (235)
..|++.+.+.-..|..|.+.--.||.+.+-.+..-.
T Consensus 186 ~~~l~~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~ 221 (244)
T cd07595 186 YEFLAKEAEIASYLIDLIEAQREYHRTALSVLEAVL 221 (244)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888889999999999999999999987665544
No 173
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.10 E-value=2.5e+02 Score=24.30 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHH-----------HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026674 171 SLLKRIQEAMNKTEEESENLH-----------RQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKT 227 (235)
Q Consensus 171 aL~~~Lq~a~~eaEeeSE~La-----------e~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~a~~~ 227 (235)
..+.++...+.+....-..|. ++|+.++ |..|++.|+.|..=..++-++..
T Consensus 61 ~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~d------L~~vKE~kk~Fdk~s~~yd~al~ 122 (200)
T cd07603 61 NCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFVKED------IKKVKESKKHFEKISDDLDNALV 122 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666 3443332 46788888888877666555543
No 174
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=39.90 E-value=48 Score=25.64 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 026674 146 LAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDR 197 (235)
Q Consensus 146 l~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~G 197 (235)
++.|+++......+.-+=..++-..+-+.-|...=.++...-|+|+.+|..|
T Consensus 11 IekLqe~lk~~e~keaERigr~AlKaGL~eieI~d~eL~~~FeeIa~RFrk~ 62 (92)
T PF07820_consen 11 IEKLQEQLKQAETKEAERIGRIALKAGLGEIEISDAELQAAFEEIAARFRKG 62 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHHHhcc
Confidence 3445555444444333322233333334445555666677777888888765
No 175
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=39.88 E-value=1.6e+02 Score=22.07 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHHHHHHh--H-HHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHH
Q 026674 166 LYSPASLLKRIQEAMNKT--E-EESENLHRQL---LDRELDIGAFVQKYKKLRTTYHRR 218 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a~~ea--E-eeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH~R 218 (235)
..+.+-|+..|+..+.+. + ++.++|-..+ -+|.|++++|+.-.-..=.-||.-
T Consensus 25 ~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~~~~ 83 (89)
T cd05022 25 SLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAVKGE 83 (89)
T ss_pred eECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 355666666666533221 2 5677776664 267899999999888887777764
No 176
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.50 E-value=3e+02 Score=29.58 Aligned_cols=66 Identities=14% Similarity=0.195 Sum_probs=38.6
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 94 RQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLL 164 (235)
Q Consensus 94 ~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~ 164 (235)
++|++-+..++.++++..+-+.+++.|++ ||..-..+. .+.. .++.++......+.++.+++..+.
T Consensus 268 dsFfha~~~~~~Lq~~~~d~~~~vk~Lre-~i~~vd~~~-~~~s---~~Ile~~~~r~n~~kL~~kL~~i~ 333 (951)
T KOG2115|consen 268 DSFFHAMTSLHNLQKELRDTMSEVKELRE-NIKEVDAEN-VRKS---IKILELALTRKNVEKLLQKLRLIA 333 (951)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHhH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888888888888888888863 444333211 1111 133344555555555555555443
No 177
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=39.01 E-value=1.9e+02 Score=22.67 Aligned_cols=7 Identities=14% Similarity=0.325 Sum_probs=2.7
Q ss_pred cCHHHHH
Q 026674 88 ADKDAYR 94 (235)
Q Consensus 88 ~d~d~l~ 94 (235)
.|+..+.
T Consensus 53 ~dp~~~k 59 (118)
T PF13815_consen 53 VDPNFLK 59 (118)
T ss_pred CCHHHHH
Confidence 3444333
No 178
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=39.00 E-value=3.2e+02 Score=25.36 Aligned_cols=20 Identities=30% Similarity=0.629 Sum_probs=9.6
Q ss_pred CHHHHHHHhcC-HHHHH-HHHH
Q 026674 79 SVDELRKLLAD-KDAYR-QFLL 98 (235)
Q Consensus 79 S~~EL~eLL~d-~d~l~-~~v~ 98 (235)
|..+|.+-|.. +++|. ++|.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~ 99 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVS 99 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554433 66665 3443
No 179
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=38.97 E-value=2.7e+02 Score=24.38 Aligned_cols=111 Identities=15% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHhcCHH--HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026674 81 DELRKLLADKD--AYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLER 158 (235)
Q Consensus 81 ~EL~eLL~d~d--~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~ 158 (235)
.++.+++.+.. ........--.+.........+...+..+.+.+-.+..++.++|..+ ..+-..+............
T Consensus 41 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l-~~~~~~l~~~~~~~~~~~~ 119 (302)
T PF10186_consen 41 RRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL-EQRRSRLSASQDLVESRQE 119 (302)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 026674 159 QKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQL 194 (235)
Q Consensus 159 q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~F 194 (235)
....+.. .-.....+|..........-..+....
T Consensus 120 ~~~~~~~--~~~~~~~~l~~l~~~l~~~r~~l~~~l 153 (302)
T PF10186_consen 120 QLEELQN--ELEERKQRLSQLQSQLARRRRQLIQEL 153 (302)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 180
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=38.93 E-value=1e+02 Score=25.26 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHH
Q 026674 187 SENLHRQLLDRELDIGAFVQKYKK 210 (235)
Q Consensus 187 SE~Lae~FL~Geidvd~FL~qF~e 210 (235)
...++.+|.+|+|+|-+||+.--.
T Consensus 33 ~~~lESqlrng~IsVreFVr~La~ 56 (131)
T PF00427_consen 33 LISLESQLRNGQISVREFVRALAK 56 (131)
T ss_dssp THHHHHHHHTTSS-HHHHHHHHHT
T ss_pred cchHHHHHHcCCCcHHHHHHHHHc
Confidence 556778999999999999987543
No 181
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=38.52 E-value=1.7e+02 Score=21.93 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026674 184 EEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKT 227 (235)
Q Consensus 184 EeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~a~~~ 227 (235)
=.+-+.|+++.-.|+++|++=|..|.....+|..-..+-.+|+.
T Consensus 16 l~eLE~IV~~LE~Gel~Le~sl~~~erG~~L~k~c~~~L~~Ae~ 59 (81)
T COG1722 16 LAELEEIVESLESGELPLEEALKEFERGMALYKECQEKLQQAEQ 59 (81)
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788887789999999999999999999876666544443
No 182
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=38.33 E-value=4.4e+02 Score=26.66 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=12.6
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 026674 175 RIQEAMNKTEEESENLHRQL 194 (235)
Q Consensus 175 ~Lq~a~~eaEeeSE~Lae~F 194 (235)
.|...+.+++++-++..+++
T Consensus 266 ~Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665544
No 183
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=38.13 E-value=2.1e+02 Score=27.57 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=12.2
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 026674 175 RIQEAMNKTEEESENLHRQL 194 (235)
Q Consensus 175 ~Lq~a~~eaEeeSE~Lae~F 194 (235)
.|...+.+++++-+.+.+++
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 77 ELKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666655
No 184
>PRK12704 phosphodiesterase; Provisional
Probab=38.02 E-value=4.2e+02 Score=26.38 Aligned_cols=22 Identities=0% Similarity=0.066 Sum_probs=9.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 026674 200 DIGAFVQKYKKLRTTYHRRALV 221 (235)
Q Consensus 200 dvd~FL~qF~e~RklyH~Rr~K 221 (235)
+...+++++.+.=+.--.++.|
T Consensus 170 ~~~~~~~~~~~~~~~~a~~~a~ 191 (520)
T PRK12704 170 EAAVLIKEIEEEAKEEADKKAK 191 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554443333333333
No 185
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=37.95 E-value=1.9e+02 Score=22.39 Aligned_cols=37 Identities=14% Similarity=0.321 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 102 QVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 102 ~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
.+..+...+.++...+..+-+.|-++-.+|.++..+.
T Consensus 11 ~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~ 47 (106)
T PF05837_consen 11 ESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQ 47 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555566666666655555555555544
No 186
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=37.92 E-value=1.7e+02 Score=23.47 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 102 QVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 102 ~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
++-.+..++..++....+|-++|-.+.=+.+.||..+
T Consensus 16 ~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 16 QLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHh
Confidence 4445555667777777777777777776677777766
No 187
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=37.75 E-value=1.6e+02 Score=26.33 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=44.8
Q ss_pred cCCHHHHHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 026674 77 DKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQE 151 (235)
Q Consensus 77 ~LS~~EL~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e 151 (235)
+-+..++.-|++.=..+.+++..+|.|-.+.+.--.-..+.+.|+.+.---..++++++..|.++-+.-++++.-
T Consensus 124 ~Qpk~D~~pl~d~L~~Y~GlL~~~pdii~~hk~A~~k~ke~~kl~~e~K~~~~~~~~v~~R~d~is~a~lAEm~h 198 (237)
T PF10456_consen 124 EQPKNDLIPLLDCLKEYRGLLSNFPDIISVHKGALQKVKECEKLSDEGKMSQQEAEEVQRRCDVISYAVLAEMNH 198 (237)
T ss_dssp TSGGGTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTCHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHhhhHhhCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777788888888888776653322234555555433223556777777775555544444433
No 188
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=37.73 E-value=1.9e+02 Score=26.43 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 026674 91 DAYRQFLLSI-DQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLH 154 (235)
Q Consensus 91 d~l~~~v~~l-~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ 154 (235)
+.++.-|..| +..+.++.+-+.|+..|+.|--.|-+...+|+.+|.++ ..+++++.
T Consensus 93 ~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l--------~~~~~~~~ 149 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL--------AELKQQQQ 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------HhhHHHHH
No 189
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=37.51 E-value=4.4e+02 Score=26.52 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026674 201 IGAFVQKYKKLRTTYHRRA 219 (235)
Q Consensus 201 vd~FL~qF~e~RklyH~Rr 219 (235)
+.+++.+|.+.=-.|..+-
T Consensus 286 ~g~~i~~~~~~~~~~y~~~ 304 (555)
T TIGR03545 286 FGPEIRKYLQKFLKYYDQA 304 (555)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 5566677766655555553
No 190
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=36.88 E-value=1.3e+02 Score=21.06 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 026674 100 IDQVKIQNNIRDELHRETLQIARDNLDKELRMIELR 135 (235)
Q Consensus 100 l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR 135 (235)
.-.+..++.++..+..++..+-.+|-.++.++..++
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666677777777777766666666666663
No 191
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=36.29 E-value=59 Score=25.31 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=17.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCC
Q 026674 175 RIQEAMNKTEEESENLHRQLLDRE 198 (235)
Q Consensus 175 ~Lq~a~~eaEeeSE~Lae~FL~Ge 198 (235)
-|...=.++..+-++||.+|-.|+
T Consensus 41 eieI~d~eL~~aFeeiAaRFR~g~ 64 (98)
T PRK13848 41 EIEIEEAELQAAFEELAKRFRGGK 64 (98)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCC
Confidence 345555677788899999998775
No 192
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=36.00 E-value=1.2e+02 Score=28.54 Aligned_cols=22 Identities=9% Similarity=0.318 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 026674 170 ASLLKRIQEAMNKTEEESENLH 191 (235)
Q Consensus 170 ~aL~~~Lq~a~~eaEeeSE~La 191 (235)
....+.|+..+.+....-.++.
T Consensus 67 ~~~i~~L~~~Ik~r~~~l~DmE 88 (330)
T PF07851_consen 67 RELIEKLEEDIKERRCQLFDME 88 (330)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH
Confidence 3445555555555555555554
No 193
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=35.27 E-value=91 Score=33.04 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 026674 39 TPSMSSFGSLNLQRPTEQSQP 59 (235)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~ 59 (235)
-|+.+|.+|.|.-+|-+|.+|
T Consensus 563 lPg~aG~PPpPppppg~~gpp 583 (1102)
T KOG1924|consen 563 LPGIAGGPPPPPPPPGGGGPP 583 (1102)
T ss_pred CCcccCCCCccCCCCCCCCCC
Confidence 344444444455555554333
No 194
>PRK02224 chromosome segregation protein; Provisional
Probab=35.25 E-value=5.3e+02 Score=26.74 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 108 NIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 108 ~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
..+..+......|.+.+-....+|.++|.++
T Consensus 606 ~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i 636 (880)
T PRK02224 606 DEIERLREKREALAELNDERRERLAEKRERK 636 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444445555555544
No 195
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=35.20 E-value=2e+02 Score=21.77 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026674 144 TELAAAQEKLHDLERQKEQLL 164 (235)
Q Consensus 144 ~el~~L~e~~~ek~~q~~~l~ 164 (235)
.++..++.+..++..+++.++
T Consensus 81 ~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 81 EEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666655555555443
No 196
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=35.12 E-value=74 Score=23.22 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=24.3
Q ss_pred HhhhhHHhccCCHHHHHHHhcCHHHHHHHHHh
Q 026674 68 AAGIIALLKDKSVDELRKLLADKDAYRQFLLS 99 (235)
Q Consensus 68 ~~~~f~~L~~LS~~EL~eLL~d~d~l~~~v~~ 99 (235)
++-|=+-|-+++..||-.|++|++.|...|.+
T Consensus 36 A~KITGMLLe~~~~ell~ll~~~~~L~~kv~e 67 (72)
T PF00658_consen 36 AGKITGMLLEMDNSELLHLLEDPELLREKVQE 67 (72)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTHHHHHHHHHH
T ss_pred hHHHHHHHhcCCHHHHHHHhCCHHHHHHHHHH
Confidence 34444556678899999999999988887764
No 197
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=34.66 E-value=3.1e+02 Score=23.91 Aligned_cols=20 Identities=15% Similarity=0.193 Sum_probs=14.5
Q ss_pred HHHHHhcCC--CCHHHHHHHHH
Q 026674 190 LHRQLLDRE--LDIGAFVQKYK 209 (235)
Q Consensus 190 Lae~FL~Ge--idvd~FL~qF~ 209 (235)
.-+.|++|. +++++|+++.+
T Consensus 156 ~y~~fi~~~~~~tve~~C~~~V 177 (244)
T PF10275_consen 156 EYEPFIDGLEYLTVEEFCSQEV 177 (244)
T ss_dssp HHGGGSSTT--S-HHHHHHHHT
T ss_pred HHhhhhcccccCCHHHHHHhhc
Confidence 456788876 89999997664
No 198
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=34.51 E-value=5.2e+02 Score=26.45 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHh
Q 026674 173 LKRIQEAMNKTEEESENLHRQLL 195 (235)
Q Consensus 173 ~~~Lq~a~~eaEeeSE~Lae~FL 195 (235)
.+.|...-++-+++--.++.+|.
T Consensus 159 ~~~~~~vr~~w~~~~~~~c~~fQ 181 (611)
T KOG2398|consen 159 VAKLEKVRKDWEQEMTDLCLKFQ 181 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 199
>COG2916 Hns DNA-binding protein H-NS [General function prediction only]
Probab=34.48 E-value=2.6e+02 Score=22.89 Aligned_cols=49 Identities=20% Similarity=0.315 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 026674 106 QNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLH 154 (235)
Q Consensus 106 l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ 154 (235)
+...+.+++.-..++.+.-++++..+..+|++-......++++...+|.
T Consensus 5 ~r~l~~~~~e~~~e~lee~~ek~eq~~~~r~~e~~~~~~~i~e~~~~~~ 53 (128)
T COG2916 5 IRTLRAMARETYLELLEEMLEKEEQVVQERQEEEAAAIAEIEERQEKYG 53 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777788888888888888887654334444454555444
No 200
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=34.31 E-value=4.2e+02 Score=25.32 Aligned_cols=61 Identities=8% Similarity=0.094 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHH
Q 026674 143 TTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQK 207 (235)
Q Consensus 143 ~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~q 207 (235)
+..++.+-.-+.+--.+...+...+.-+.....|+..+..+..-.+.|..-- + ||+.|+.+
T Consensus 292 L~Nle~lt~~LA~as~~l~~l~~~l~~p~~~~~L~qtl~sl~~t~~ni~~vs--~--dv~~ft~D 352 (370)
T PLN03094 292 LKEVEKLTRVAAEASEDLRRLNSSILTPENTELLRQSIYTLTKTLKHIESIS--S--DISGFTGD 352 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH--H--HHHHHhcC
Confidence 3455555555555555677777666766677888888888886655554432 1 46777766
No 201
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=34.08 E-value=1e+02 Score=28.19 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=22.9
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 026674 178 EAMNKTEEESENLHRQLLDRELDIGAFVQKYKKL 211 (235)
Q Consensus 178 ~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~ 211 (235)
+.....++||+.|-+.|.+++ -++.|++-....
T Consensus 231 ~l~~an~~E~~~l~~~W~s~e-~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 231 ELIKANEEECNVLLKQWVSAE-CLARFKQYLSKK 263 (266)
T ss_pred HHHHhhHHHHHHHHhhccChH-HHHHHHHHhccc
Confidence 344567899999999998876 456665544433
No 202
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=34.04 E-value=3.1e+02 Score=23.71 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=19.0
Q ss_pred hhhHHhccCCHHHHHHHh---cCHH-HHHHHHHhc
Q 026674 70 GIIALLKDKSVDELRKLL---ADKD-AYRQFLLSI 100 (235)
Q Consensus 70 ~~f~~L~~LS~~EL~eLL---~d~d-~l~~~v~~l 100 (235)
++|..|..+=..-+++++ .||. .++.|+.++
T Consensus 2 ~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem 36 (219)
T TIGR02977 2 GIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEM 36 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 355566666555566655 6777 666666654
No 203
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=33.97 E-value=1.5e+02 Score=19.96 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 026674 186 ESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALV 221 (235)
Q Consensus 186 eSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K 221 (235)
.-+.|+++.-+|++++|+-++.|.+..+++..-+.+
T Consensus 7 ~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~ 42 (53)
T PF02609_consen 7 RLEEIVEKLESGELSLDESLKLYEEGMELIKKCQER 42 (53)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777789999999999999999988764444
No 204
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=33.71 E-value=97 Score=25.79 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026674 141 IRTTELAAAQEKLHDLERQKEQ 162 (235)
Q Consensus 141 ~~~~el~~L~e~~~ek~~q~~~ 162 (235)
++|....+++.+++++..+++.
T Consensus 63 DeFAkwaKl~Rk~~kl~~el~~ 84 (161)
T PF04420_consen 63 DEFAKWAKLNRKLDKLEEELEK 84 (161)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666655554
No 205
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=33.65 E-value=3.4e+02 Score=24.05 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHH
Q 026674 109 IRDELHRETLQIARDNLDKELRMIEL 134 (235)
Q Consensus 109 ~~e~l~~~N~~LAe~NL~~e~~L~el 134 (235)
...++.++|+.|-++|..++.++.++
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554444433
No 206
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.56 E-value=3.2e+02 Score=23.73 Aligned_cols=114 Identities=11% Similarity=0.135 Sum_probs=65.4
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 026674 93 YRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASL 172 (235)
Q Consensus 93 l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL 172 (235)
|..|... ++++...++.|+.+.....-..|... +. +.+.+.+.++.+|+.-...++....+|..-.=
T Consensus 65 l~kF~~~---l~ei~~~~~~L~~q~~~~l~~pL~~F------~k----~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k 131 (202)
T cd07606 65 MTKFTSA---LREIGSYKEVLRSQVEHMLNDRLAQF------AD----TDLQEVKDARRRFDKASLDYEQARSKFLSLTK 131 (202)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4444433 45666677777777666554444444 22 23446678888888888888876555432111
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 026674 173 LKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRAL 220 (235)
Q Consensus 173 ~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~ 220 (235)
..+ ...+.+++++.+..-..|....+|.-.=|..-..+|+.-.+..+
T Consensus 132 ~~k-~~~~~ea~~~l~~~R~~F~~~~ldyv~~ln~~q~kKk~e~le~l 178 (202)
T cd07606 132 DAK-PEILAAAEEDLGTTRSAFETARFDLMNRLHAADARKRVEFLERL 178 (202)
T ss_pred cCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 12355788888887788866555554445555555555444433
No 207
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=33.39 E-value=27 Score=27.26 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=18.1
Q ss_pred CHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 026674 89 DKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELR 135 (235)
Q Consensus 89 d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR 135 (235)
|++.++.|+..+ ...++.|..+|..|-..+-.+..+|..++
T Consensus 19 d~~eVD~fl~~l------~~~~~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 19 DPDEVDDFLDEL------AEELERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp EHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHCCCCT-----
T ss_pred CHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 667777777664 22334444444444443334444444443
No 208
>PF15469 Sec5: Exocyst complex component Sec5
Probab=33.28 E-value=2.8e+02 Score=22.94 Aligned_cols=87 Identities=14% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcC--------------
Q 026674 132 IELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDR-------------- 197 (235)
Q Consensus 132 ~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~G-------------- 197 (235)
++++.=| ..-+..+-..+...+....+..........+.....|...+.++...++.+-...+++
T Consensus 2 ~~lk~LV-~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l 80 (182)
T PF15469_consen 2 EDLKSLV-KENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFL 80 (182)
T ss_pred HHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Q ss_pred ------------------CCCHHHHHHHHHHHHHHHHHHH
Q 026674 198 ------------------ELDIGAFVQKYKKLRTTYHRRA 219 (235)
Q Consensus 198 ------------------eidvd~FL~qF~e~RklyH~Rr 219 (235)
+-+.+.||+.|...+.+|...+
T Consensus 81 ~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~ 120 (182)
T PF15469_consen 81 QRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYK 120 (182)
T ss_pred HHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhh
No 209
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=32.81 E-value=7e+02 Score=27.40 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHh
Q 026674 170 ASLLKRIQEAMNKTEEESENLHRQLL 195 (235)
Q Consensus 170 ~aL~~~Lq~a~~eaEeeSE~Lae~FL 195 (235)
++-+..+...+...++|++.+.+.+-
T Consensus 322 ea~i~~~~~e~~~~d~Ei~~~r~~~~ 347 (1074)
T KOG0250|consen 322 EAKIGELKDEVDAQDEEIEEARKDLD 347 (1074)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 44455566666666666666666653
No 210
>PRK00106 hypothetical protein; Provisional
Probab=32.49 E-value=5.3e+02 Score=25.93 Aligned_cols=13 Identities=8% Similarity=0.123 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 026674 201 IGAFVQKYKKLRT 213 (235)
Q Consensus 201 vd~FL~qF~e~Rk 213 (235)
...+++++.+.=+
T Consensus 186 ~~~~i~~~e~~a~ 198 (535)
T PRK00106 186 IATRIREAEREVK 198 (535)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 211
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=32.21 E-value=3.3e+02 Score=24.80 Aligned_cols=66 Identities=21% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCHHHH-HHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 026674 134 LRNQSKIIRTTELAAAQEKLHDLER-QKEQLLKLYSPASL-LKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKL 211 (235)
Q Consensus 134 lR~ql~~~~~~el~~L~e~~~ek~~-q~~~l~~~~Sp~aL-~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~ 211 (235)
++.++ ..++.+...+..+..++.. +..-|...+-.=-| ..||| ++|++| ++|...|...
T Consensus 162 l~~eL-qkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQ-----------------l~g~Ld-~~~q~~~~ae 222 (289)
T COG4985 162 LEREL-QKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQ-----------------LNGQLD-DEFQQHYVAE 222 (289)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------hccccc-HHHHHHHHHH
Q ss_pred HHHHHHH
Q 026674 212 RTTYHRR 218 (235)
Q Consensus 212 RklyH~R 218 (235)
|..-..|
T Consensus 223 ~seLq~r 229 (289)
T COG4985 223 KSELQKR 229 (289)
T ss_pred HHHHHHH
No 212
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=31.94 E-value=5.4e+02 Score=25.84 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=17.0
Q ss_pred HHHHHHHhcCHHHHHHHHHhcH--HHHHHHHHHHHHHH
Q 026674 80 VDELRKLLADKDAYRQFLLSID--QVKIQNNIRDELHR 115 (235)
Q Consensus 80 ~~EL~eLL~d~d~l~~~v~~l~--~vq~l~~~~e~l~~ 115 (235)
..-.+.||.|-.-|-..+...- +-+.++.++.+|..
T Consensus 498 ~SS~eTll~niq~llkva~dnar~qekQiq~Ek~ELkm 535 (641)
T KOG3915|consen 498 LSSIETLLTNIQGLLKVAIDNARAQEKQIQLEKTELKM 535 (641)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777544443333322 22334445555554
No 213
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=31.91 E-value=82 Score=26.42 Aligned_cols=35 Identities=31% Similarity=0.286 Sum_probs=24.0
Q ss_pred CHHHHHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHH
Q 026674 79 SVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELH 114 (235)
Q Consensus 79 S~~EL~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~ 114 (235)
|..+|+.||.|+. |..++.++++.-+..++...++
T Consensus 86 ssseLrsll~dp~-Lr~Li~sid~~~n~~kel~aam 120 (157)
T KOG2857|consen 86 SSSELRSLLEDPH-LRNLIESIDELLNIMKELVAAM 120 (157)
T ss_pred chHHHHHHHhCHH-HHHHHHHHHHHhhHHHHHHHHh
Confidence 6789999999986 6677777666655544444444
No 214
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=31.87 E-value=5.8e+02 Score=26.13 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=13.9
Q ss_pred HHHHHHHHHHH---HHHhHHHHHHHHHHH
Q 026674 169 PASLLKRIQEA---MNKTEEESENLHRQL 194 (235)
Q Consensus 169 p~aL~~~Lq~a---~~eaEeeSE~Lae~F 194 (235)
.+.++..|+.. ....-.+.+.|..++
T Consensus 232 ~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~ 260 (617)
T PF15070_consen 232 RDQYLGHLQQYVAAYQQLASEKEELHKQL 260 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555543 344556666666655
No 215
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=31.64 E-value=9.1e+02 Score=28.40 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026674 148 AAQEKLHDLERQKEQLL 164 (235)
Q Consensus 148 ~L~e~~~ek~~q~~~l~ 164 (235)
.++....++..+..+|.
T Consensus 1094 ~l~k~i~eL~~~i~el~ 1110 (1930)
T KOG0161|consen 1094 QLQKQIKELEARIKELE 1110 (1930)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444443
No 216
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=31.57 E-value=2e+02 Score=20.62 Aligned_cols=52 Identities=19% Similarity=0.301 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHHHHH------hHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHH
Q 026674 166 LYSPASLLKRIQEAMNK------TEEESENLHRQLL---DRELDIGAFVQKYKKLRTTYHR 217 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a~~e------aEeeSE~Lae~FL---~Geidvd~FL~qF~e~RklyH~ 217 (235)
..+.+-+...|+..... .+++.+.|-..|- +|.|++++|+.-+...=+..|+
T Consensus 26 ~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~~~~~ 86 (88)
T cd00213 26 TLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAVACHE 86 (88)
T ss_pred cCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHHHHhh
Confidence 34555555555432221 2556666666652 5789999999998888777765
No 217
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=31.32 E-value=2.5e+02 Score=22.02 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=19.6
Q ss_pred cCCCC-HHHHHHHHHHHHHHHHHH
Q 026674 196 DRELD-IGAFVQKYKKLRTTYHRR 218 (235)
Q Consensus 196 ~Geid-vd~FL~qF~e~RklyH~R 218 (235)
+|+++ ...=++.+...|..||.+
T Consensus 75 eGnl~eAKaaak~l~d~Rn~YHkK 98 (100)
T COG3783 75 EGNLDEAKAAAKTLKDTRNTYHKK 98 (100)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHh
Confidence 48875 677789999999999986
No 218
>PRK14161 heat shock protein GrpE; Provisional
Probab=31.25 E-value=3.3e+02 Score=23.22 Aligned_cols=11 Identities=0% Similarity=0.066 Sum_probs=4.9
Q ss_pred cCHHHHHHHHH
Q 026674 88 ADKDAYRQFLL 98 (235)
Q Consensus 88 ~d~d~l~~~v~ 98 (235)
+|+..+.+++.
T Consensus 8 ~~~~~~~~~~~ 18 (178)
T PRK14161 8 NNEQTINDIAE 18 (178)
T ss_pred ccHHHHHHHHH
Confidence 34444444443
No 219
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.10 E-value=3.9e+02 Score=23.92 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026674 187 SENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKT 227 (235)
Q Consensus 187 SE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~a~~~ 227 (235)
...+-+.+++. .+.-.-|..|.+.-..||.+....+....
T Consensus 200 a~~~M~~il~~-~e~i~~L~~fv~AQl~Yh~~~~e~L~~l~ 239 (242)
T cd07600 200 AVELMKEVLDN-PEPLQLLKELVKAQLAYHKTAAELLEELL 239 (242)
T ss_pred HHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444 45566678899999999999988776543
No 220
>PLN02939 transferase, transferring glycosyl groups
Probab=31.07 E-value=6e+02 Score=27.61 Aligned_cols=97 Identities=23% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHHHHhcC-HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHH-HHHHHHHHHHHHHH
Q 026674 80 VDELRKLLAD-KDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRT-TELAAAQEKLHDLE 157 (235)
Q Consensus 80 ~~EL~eLL~d-~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~-~el~~L~e~~~ek~ 157 (235)
++-|+.||.. ....+..+.-|.+.++++..++.|.+. |++.|..+. +... ++.+ +.++.++++++.-.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~ 371 (977)
T PLN02939 302 VENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEAS---LKEANVSKF------SSYK-VELLQQKLKLLEERLQASD 371 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH---HHHhhHhhh------hHHH-HHHHHHHHHHHHHHHHhhH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhHHHHH
Q 026674 158 RQKEQLLKLYSPASLLKRIQEAMNKTEEESE 188 (235)
Q Consensus 158 ~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE 188 (235)
.+.+.-.+-| ..-...+|..+.+.-+|++
T Consensus 372 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 400 (977)
T PLN02939 372 HEIHSYIQLY--QESIKEFQDTLSKLKEESK 400 (977)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHhhhh
No 221
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=31.02 E-value=4.5e+02 Score=24.61 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=43.1
Q ss_pred CCchhHhhhhHHh--ccCCHHHHHHHhcCHHHHHHHHHhcHHHHHHHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 63 VSPAEAAGIIALL--KDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIR-DELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 63 ~~p~~~~~~f~~L--~~LS~~EL~eLL~d~d~l~~~v~~l~~vq~l~~~~-e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
.+|..+..+|-.+ ..--+.++..--+|-+++-.++..-.-=-.+-..+ ..|...|..|.+.|-..+..|...+.++
T Consensus 35 ls~~~~~~~l~y~~Lc~~rv~qmtkty~Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v 113 (306)
T PF04849_consen 35 LSPEQIEETLRYFLLCSDRVSQMTKTYNDIDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQV 113 (306)
T ss_pred CCHHHHHHHHHHHHhcccchhhhhcchhhHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 4566666666543 44445555554455555555554321111222233 5667788888888888877776666555
No 222
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=31.00 E-value=2.2e+02 Score=21.08 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHH------HHhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHH
Q 026674 167 YSPASLLKRIQEAM------NKTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYHR 217 (235)
Q Consensus 167 ~Sp~aL~~~Lq~a~------~eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH~ 217 (235)
-+.+-|...|+... ...+.+-++|-..+ -+|.|+.++|+.-....=..+|-
T Consensus 29 Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~~~~ 88 (93)
T cd05026 29 LSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVACND 88 (93)
T ss_pred ECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 36666766665532 22455677777776 35889999999988777666664
No 223
>PRK11546 zraP zinc resistance protein; Provisional
Probab=30.86 E-value=3.1e+02 Score=22.77 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 026674 127 KELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASL 172 (235)
Q Consensus 127 ~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL 172 (235)
++..++.++++- +.+...|.++...|..+++.++..-.||.-
T Consensus 48 QQa~~q~I~~~f----~~~t~~LRqqL~aKr~ELnALl~~~~pD~~ 89 (143)
T PRK11546 48 QQAAWQKIHNDF----YAQTSALRQQLVSKRYEYNALLTANPPDSS 89 (143)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 334444444433 345667777777788888877766666543
No 224
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=30.67 E-value=5.5e+02 Score=25.56 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=35.2
Q ss_pred chhHhhhhHHhccCCH---HHHHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 65 PAEAAGIIALLKDKSV---DELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARD 123 (235)
Q Consensus 65 p~~~~~~f~~L~~LS~---~EL~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~ 123 (235)
..+.......|..... .++.+.+ .+.+.+|+..+...+++....+.+..++.++.+.
T Consensus 9 ~edl~~~I~~L~~~i~~~k~eV~~~I--~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~ 68 (593)
T PF06248_consen 9 KEDLRKSISRLSRRIEELKEEVHSMI--NKKYSDFSPSLQSAKDLIERSKSLAREINDLLQS 68 (593)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555543332 3333333 4557788888888888888888888777566543
No 225
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=30.63 E-value=5.8e+02 Score=25.82 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHHHhHHHHHHHHH
Q 026674 168 SPASLLKRIQEAMNKTEEESENLHR 192 (235)
Q Consensus 168 Sp~aL~~~Lq~a~~eaEeeSE~Lae 192 (235)
+.+...+.|+.++.+.=.+=|.+..
T Consensus 239 ~r~~F~~eL~~Ai~eiRaqye~~~~ 263 (546)
T KOG0977|consen 239 NREYFKNELALAIREIRAQYEAISR 263 (546)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554444443
No 226
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=30.30 E-value=3.8e+02 Score=23.55 Aligned_cols=12 Identities=17% Similarity=0.116 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 026674 110 RDELHRETLQIA 121 (235)
Q Consensus 110 ~e~l~~~N~~LA 121 (235)
++.+...|..+.
T Consensus 65 ~e~L~~~~~~l~ 76 (251)
T PF11932_consen 65 IENLEVYNEQLE 76 (251)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 227
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=30.26 E-value=62 Score=21.01 Aligned_cols=43 Identities=16% Similarity=0.382 Sum_probs=27.8
Q ss_pred CHHHHHHHHHH-HHH-HhHHHHHHHHHHH---hcCCCCHHHHHHHHHH
Q 026674 168 SPASLLKRIQE-AMN-KTEEESENLHRQL---LDRELDIGAFVQKYKK 210 (235)
Q Consensus 168 Sp~aL~~~Lq~-a~~-eaEeeSE~Lae~F---L~Geidvd~FL~qF~e 210 (235)
+.+.+..-|+. .+. -.+++.+.|...| -+|.|+.++|+.-+..
T Consensus 6 ~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 6 TREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp EHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 34445555532 122 4567788888777 3688999999986653
No 228
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=30.07 E-value=3.1e+02 Score=22.42 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 110 RDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 110 ~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
.+.+...+..|-..|+.++.+|..|...+
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~ 44 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKN 44 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445455555555555554444
No 229
>KOG3032 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.79 E-value=1.9e+02 Score=26.29 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 026674 142 RTTELAAAQEKLHDLERQKEQLLKL 166 (235)
Q Consensus 142 ~~~el~~L~e~~~ek~~q~~~l~~~ 166 (235)
++.|--..+.++..+..+...+...
T Consensus 202 eidEQi~~~kkvekl~~qK~ellnk 226 (264)
T KOG3032|consen 202 EIDEQISYKKKVEKLKRQKMELLNK 226 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566665555554443
No 230
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=29.77 E-value=1.8e+02 Score=19.65 Aligned_cols=11 Identities=45% Similarity=0.721 Sum_probs=7.0
Q ss_pred cCCHHHHHHHh
Q 026674 77 DKSVDELRKLL 87 (235)
Q Consensus 77 ~LS~~EL~eLL 87 (235)
++|.+|+++++
T Consensus 14 GfsL~eI~~~l 24 (65)
T PF09278_consen 14 GFSLEEIRELL 24 (65)
T ss_dssp T--HHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 57778888877
No 231
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=29.44 E-value=4.2e+02 Score=23.75 Aligned_cols=10 Identities=40% Similarity=0.750 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 026674 201 IGAFVQKYKK 210 (235)
Q Consensus 201 vd~FL~qF~e 210 (235)
+..||+.|-.
T Consensus 166 f~~fl~~yP~ 175 (263)
T PRK10803 166 FQNFVKKYPD 175 (263)
T ss_pred HHHHHHHCcC
Confidence 4555555543
No 232
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=29.20 E-value=2.8e+02 Score=21.94 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 026674 102 QVKIQNNIRDELHRETLQIARDNLDKELRMIEL 134 (235)
Q Consensus 102 ~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~el 134 (235)
++..+...+..++.+|..|--+|--+..+|.++
T Consensus 23 el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 23 ELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555567777777777777777777777765
No 233
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=29.19 E-value=2.2e+02 Score=20.52 Aligned_cols=31 Identities=10% Similarity=-0.058 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 026674 105 IQNNIRDELHRETLQIARDNLDKELRMIELR 135 (235)
Q Consensus 105 ~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR 135 (235)
.+...++.|+.-...|-++|..+..++..+.
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~ 34 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWR 34 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555444444433
No 234
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=29.18 E-value=4.4e+02 Score=24.59 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh--HHHHHHHHHH----HHHHHHHHHHHHHHHHhcC
Q 026674 103 VKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS--KIIRTTELAA----AQEKLHDLERQKEQLLKLY 167 (235)
Q Consensus 103 vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql--~~~~~~el~~----L~e~~~ek~~q~~~l~~~~ 167 (235)
||.+...++.+.+.....|-.--.+...|+..|.++ ...++..|.. --.+|+.-+.+++.++..|
T Consensus 114 Iq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y 184 (338)
T KOG3647|consen 114 IQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRY 184 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
No 235
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=29.06 E-value=4.8e+02 Score=24.33 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHh
Q 026674 126 DKELRMIELRNQS 138 (235)
Q Consensus 126 ~~e~~L~elR~ql 138 (235)
+.+.+|++||.||
T Consensus 86 dRetEI~eLksQL 98 (305)
T PF15290_consen 86 DRETEIDELKSQL 98 (305)
T ss_pred hhHHHHHHHHHHH
Confidence 3666777777776
No 236
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=29.03 E-value=1.8e+02 Score=25.59 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 107 NNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 107 ~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
+..+.+.+.+|+.|.+..-.+..+|..+|.+.
T Consensus 117 R~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en 148 (200)
T PF07412_consen 117 RKALEEALEENEKLHKEIEQKDEEIAKLKEEN 148 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677778888888877777777777777654
No 237
>PRK06798 fliD flagellar capping protein; Validated
Probab=28.98 E-value=2.3e+02 Score=27.58 Aligned_cols=19 Identities=37% Similarity=0.679 Sum_probs=13.2
Q ss_pred HHHHHHh-cCHHHHHHHHHh
Q 026674 81 DELRKLL-ADKDAYRQFLLS 99 (235)
Q Consensus 81 ~EL~eLL-~d~d~l~~~v~~ 99 (235)
+.|++-| +|++.+.+|+..
T Consensus 336 ~kL~~al~~np~~V~~lF~g 355 (440)
T PRK06798 336 EALKKALKENPDAAKQFFFG 355 (440)
T ss_pred HHHHHHHHHCHHHHHHHhcC
Confidence 3477755 778888888754
No 238
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.95 E-value=4.1e+02 Score=23.53 Aligned_cols=59 Identities=17% Similarity=0.280 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHH
Q 026674 146 LAAAQEKLHDLERQKEQLLKLYSP---ASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKY 208 (235)
Q Consensus 146 l~~L~e~~~ek~~q~~~l~~~~Sp---~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF 208 (235)
..+++.-..++..+|. +.+- +.|..-+..-+..++|--|.|+..+-.++||.++...+.
T Consensus 106 v~AmK~~~k~mK~~yk----kvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~peide~dL~aEL 167 (218)
T KOG1655|consen 106 VAAMKDTNKEMKKQYK----KVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPDIDEADLDAEL 167 (218)
T ss_pred HHHHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHH
Confidence 3445554444555444 3333 344556777777788888888888877888777665543
No 239
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.95 E-value=8.5e+02 Score=27.20 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026674 199 LDIGAFVQKYKKLRTTYHRRALVHLSAKT 227 (235)
Q Consensus 199 idvd~FL~qF~e~RklyH~Rr~K~~a~~~ 227 (235)
-+++...+.-...+...|.++-+..-++.
T Consensus 563 k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 563 KELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555566555444443
No 240
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.88 E-value=3.9e+02 Score=23.26 Aligned_cols=120 Identities=11% Similarity=0.140 Sum_probs=61.7
Q ss_pred HHHHHhcCHHHHHHHHHhcH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026674 82 ELRKLLADKDAYRQFLLSID-QVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQK 160 (235)
Q Consensus 82 EL~eLL~d~d~l~~~v~~l~-~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~ 160 (235)
+|...-.|++.+..-+..+- .++++...++.|+.+.....-..|... .+.. +.+.+..+.+|+.--.++
T Consensus 48 d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~~L~~F-----~k~d-----l~~vke~kk~FdK~s~~~ 117 (200)
T cd07638 48 DLAQYSSKDAVIETSLTKFSDTLQEMINYHTILFDQAQRSIKAQLQTF-----VKED-----LRKFKDAKKQFDKVSEEK 117 (200)
T ss_pred HHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-----hHHHHHHHHHHHHHhHHH
Confidence 33333344444444444332 346666677777777666655555554 2222 335567777777666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 026674 161 EQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRT 213 (235)
Q Consensus 161 ~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~Rk 213 (235)
.....++..-. ..+ ...+.+++++-...-..|...-+|.=.=|+.-.+.|+
T Consensus 118 ~~aL~K~~~~~-k~k-~~e~eEa~~~l~~~r~~F~~~~ldYv~~ln~vq~kKk 168 (200)
T cd07638 118 ENALVKNAQVQ-RNK-QHEVEEATNILTATRKCFRHIALDYVLQINVLQSKRR 168 (200)
T ss_pred HHHHHHhccCC-cCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555544222 222 3445566666666666665544443333344333333
No 241
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.82 E-value=6.8e+02 Score=25.99 Aligned_cols=142 Identities=15% Similarity=0.202 Sum_probs=0.0
Q ss_pred ccCCHHHHHHHhcC-HHHHHHHHHhcHHHHHHHHHHHHHHH-----------------------HHHHHHHHhhhhhHHH
Q 026674 76 KDKSVDELRKLLAD-KDAYRQFLLSIDQVKIQNNIRDELHR-----------------------ETLQIARDNLDKELRM 131 (235)
Q Consensus 76 ~~LS~~EL~eLL~d-~d~l~~~v~~l~~vq~l~~~~e~l~~-----------------------~N~~LAe~NL~~e~~L 131 (235)
.++|...|++|-.. .++-+.+...+..|..+...+..+.. .+..+...++++-..+
T Consensus 155 ~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~ 234 (660)
T KOG4302|consen 155 SDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKM 234 (660)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHH
Q ss_pred H-HHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHhcC--------------CHHHHHHHHHHHHHHhHHH-------
Q 026674 132 I-ELRNQSKIIRTTELAAAQEKLHDLERQKE---QLLKLY--------------SPASLLKRIQEAMNKTEEE------- 186 (235)
Q Consensus 132 ~-elR~ql~~~~~~el~~L~e~~~ek~~q~~---~l~~~~--------------Sp~aL~~~Lq~a~~eaEee------- 186 (235)
. .++.+. ..+.+.++.|..++.+||..++ +-...| |.+.|... .+.+..+++-
T Consensus 235 v~~l~~~k-~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~~ls~d~I~~v-e~Ev~Rl~qlK~s~mKe 312 (660)
T KOG4302|consen 235 VKKLKEEK-KQRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVTESEATEPNSLSLDIIEQV-EKEVDRLEQLKASNMKE 312 (660)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHccccHHHhhccccccHHHHHHH-HHHHHHHHHHHHHhHHH
Q ss_pred ------------------HH--HHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 187 ------------------SE--NLHRQLL-----DRELDIGAFVQKYKKLRTTYHRRALVHLS 224 (235)
Q Consensus 187 ------------------SE--~Lae~FL-----~Geidvd~FL~qF~e~RklyH~Rr~K~~a 224 (235)
+. +.+..|. .|.+|+.+-+.. ... |.+++|..|
T Consensus 313 li~k~r~Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~-~d~----~i~k~keea 370 (660)
T KOG4302|consen 313 LIEKKRSELEELWRLLHYSEENESRRRFITYLIDSGTEDVLELLEN-IDN----LIKKYKEEA 370 (660)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHH-HHH----HHHHHHHHH
No 242
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=28.78 E-value=5.3e+02 Score=24.71 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 026674 168 SPASLLKRIQEAMNKTEEESENLHRQL 194 (235)
Q Consensus 168 Sp~aL~~~Lq~a~~eaEeeSE~Lae~F 194 (235)
+..-+....+..+.+++++-+.|.+++
T Consensus 73 ~D~em~ema~~Ei~~~~~~~~~le~~L 99 (363)
T COG0216 73 KDPEMREMAEEEIKELEAKIEELEEEL 99 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888899999999988888876
No 243
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=28.72 E-value=77 Score=22.82 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=23.7
Q ss_pred hhHHhccCCHHHHHHHhcCHHHHHHHHHh
Q 026674 71 IIALLKDKSVDELRKLLADKDAYRQFLLS 99 (235)
Q Consensus 71 ~f~~L~~LS~~EL~eLL~d~d~l~~~v~~ 99 (235)
|=+=|-.++.+||-.||.|++.|.+.|.+
T Consensus 28 ITGMLLEmd~~ell~lle~~~~L~~kv~E 56 (64)
T smart00517 28 ITGMLLEMDNSELLHLLESPELLRSKVDE 56 (64)
T ss_pred CeeeeeCCCHHHHHHHhcCHHHHHHHHHH
Confidence 33445579999999999999999988865
No 244
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=28.64 E-value=4.2e+02 Score=26.88 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=23.3
Q ss_pred HHHHHHHhcCH--HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 026674 80 VDELRKLLADK--DAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELR 135 (235)
Q Consensus 80 ~~EL~eLL~d~--d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR 135 (235)
.+.++++..+. .+|+++|. ++-+.++.|+..|..+.++.-+++.+|...+
T Consensus 353 ~~~~r~~v~nsI~kcLe~qIn------~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~ 404 (557)
T PF01763_consen 353 QQAFRDSVSNSINKCLEGQIN------NQFDTIEDLKEENQDLEKKLRELESELSRYR 404 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555442 23444443 3444555555555555544444444444433
No 245
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=28.61 E-value=3e+02 Score=27.42 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=25.0
Q ss_pred CCHHHHHHHhcCHHHHHHHHHhcHHHHHHHHH
Q 026674 78 KSVDELRKLLADKDAYRQFLLSIDQVKIQNNI 109 (235)
Q Consensus 78 LS~~EL~eLL~d~d~l~~~v~~l~~vq~l~~~ 109 (235)
+..--++.|++|+|.+..+|...|+.+++...
T Consensus 163 m~nP~vq~ll~Npd~mrq~I~anPqmq~lm~~ 194 (493)
T KOG0010|consen 163 MENPIVQSLLNNPDLMRQLIMANPQMQDLMQR 194 (493)
T ss_pred hhChHHHHHhcChHHHHHHHhcCHHHHHHHhh
Confidence 44456778888999999999988888877653
No 246
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=28.54 E-value=3.4e+02 Score=24.15 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=22.3
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 026674 124 NLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLY 167 (235)
Q Consensus 124 NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~ 167 (235)
|......+..++.+++ .+-.+|+.++.+...+.++-+.+...|
T Consensus 153 ~~~~~~~~~kL~~el~-~~~~~Le~~~~~~~al~Kq~e~~~~Ey 195 (216)
T KOG1962|consen 153 NDKLKADLEKLETELE-KKQKKLEKAQKKVDALKKQSEGLQDEY 195 (216)
T ss_pred HHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 4444555555555552 344455555555555555555444443
No 247
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=28.40 E-value=6.3e+02 Score=25.52 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 026674 110 RDELHRETLQIARDNLDKELRMIELRNQ 137 (235)
Q Consensus 110 ~e~l~~~N~~LAe~NL~~e~~L~elR~q 137 (235)
+-.+..--++|||.||.++ |...+.-
T Consensus 214 R~~~~eR~RdlaEeNl~kE--i~~~~~~ 239 (538)
T PF05781_consen 214 RLKLEERSRDLAEENLKKE--IENCLKL 239 (538)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 3444466789999999987 4555543
No 248
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=28.23 E-value=2.6e+02 Score=20.92 Aligned_cols=17 Identities=12% Similarity=0.530 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026674 201 IGAFVQKYKKLRTTYHR 217 (235)
Q Consensus 201 vd~FL~qF~e~RklyH~ 217 (235)
+-+-+.+|...+..|-.
T Consensus 98 f~~~m~~fq~~Q~~~~~ 114 (117)
T smart00503 98 FKEVMNEFQRLQRKYRE 114 (117)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35557778777777754
No 249
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=28.23 E-value=4.1e+02 Score=23.32 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=60.8
Q ss_pred hHhhhhHHhccCCHHHHHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHH
Q 026674 67 EAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTEL 146 (235)
Q Consensus 67 ~~~~~f~~L~~LS~~EL~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el 146 (235)
+++.+-+++..||.+|=++|-..=+++++=|..|-+| || +++.+..+||+.|. +.-+
T Consensus 30 ~~a~s~s~~~~LSe~Ekeelr~EL~kvEeEI~TLrqV----------------La----AKerH~~ELKRKLG---lt~~ 86 (208)
T KOG4010|consen 30 DVAASASEFEALSEEEKEELRTELAKVEEEIVTLRQV----------------LA----AKERHAAELKRKLG---LTVL 86 (208)
T ss_pred chhhhhhHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH----------------HH----HHHHHHHHHHHHhC---cchH
Confidence 3567777888889888775544444444333333332 22 35666667777763 3445
Q ss_pred HHHHHHHHHHHHHHHH--HHh----------------cCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 026674 147 AAAQEKLHDLERQKEQ--LLK----------------LYSPASLLKRIQEAMNKTEEESENLHRQL 194 (235)
Q Consensus 147 ~~L~e~~~ek~~q~~~--l~~----------------~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~F 194 (235)
.+|.+.+..-|+..+. .+. .....+|...-|...+..-.-+..|-++|
T Consensus 87 ~EL~qnisksw~d~q~st~y~kt~~~~g~~~~~vy~~~~tqetlSqagQKtsaa~ssvgs~Is~Kl 152 (208)
T KOG4010|consen 87 KELKQNISKSWKDVQASTAYVKTSQSVGTFTKTVYEAPLTQETLSQAGQKTSAAFSSVGSAISRKL 152 (208)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhhhhhccccceeeecccchhhHHhhhHHHHHHHHHHhHHHHHHH
Confidence 5555555554544331 111 12235666666777777777888888887
No 250
>PLN02320 seryl-tRNA synthetase
Probab=28.22 E-value=3.4e+02 Score=27.10 Aligned_cols=18 Identities=11% Similarity=0.091 Sum_probs=11.5
Q ss_pred HHHHHHhcCHHHHHHHHH
Q 026674 81 DELRKLLADKDAYRQFLL 98 (235)
Q Consensus 81 ~EL~eLL~d~d~l~~~v~ 98 (235)
=+++.+.+|++.+..-+.
T Consensus 67 lD~k~ir~n~~~v~~~l~ 84 (502)
T PLN02320 67 IDFKWIRDNKEAVAINIR 84 (502)
T ss_pred cCHHHHHhCHHHHHHHHH
Confidence 446667778776665554
No 251
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=28.19 E-value=7.1e+02 Score=26.07 Aligned_cols=24 Identities=13% Similarity=0.320 Sum_probs=14.3
Q ss_pred CCCchhHhhhhHHhccCCHHHHHH
Q 026674 62 HVSPAEAAGIIALLKDKSVDELRK 85 (235)
Q Consensus 62 ~~~p~~~~~~f~~L~~LS~~EL~e 85 (235)
+|.|+-+.+.|.+|..--..-|+.
T Consensus 249 ~p~~~lv~DLfSEl~~~EiqKL~q 272 (717)
T PF09730_consen 249 SPAPSLVSDLFSELNLSEIQKLKQ 272 (717)
T ss_pred CCCCcccchhhhhcchHHHHHHHH
Confidence 555666788888776443333333
No 252
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=28.13 E-value=4.1e+02 Score=23.26 Aligned_cols=10 Identities=30% Similarity=0.461 Sum_probs=3.8
Q ss_pred hHHHHHHHHH
Q 026674 128 ELRMIELRNQ 137 (235)
Q Consensus 128 e~~L~elR~q 137 (235)
+..|..++.+
T Consensus 88 ~~~i~~le~~ 97 (196)
T PF15272_consen 88 QSRISNLEKQ 97 (196)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 253
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=28.13 E-value=3.3e+02 Score=26.24 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026674 145 ELAAAQEKLHDLERQKEQ 162 (235)
Q Consensus 145 el~~L~e~~~ek~~q~~~ 162 (235)
+++.+++++.+++.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 81 EIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555554443
No 254
>PLN02678 seryl-tRNA synthetase
Probab=27.81 E-value=5.9e+02 Score=24.95 Aligned_cols=17 Identities=6% Similarity=0.296 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026674 145 ELAAAQEKLHDLERQKE 161 (235)
Q Consensus 145 el~~L~e~~~ek~~q~~ 161 (235)
+++.++.++.+++.++.
T Consensus 86 ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 86 EITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 255
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=27.49 E-value=6.2e+02 Score=25.15 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHH-----HHHHHHHHH
Q 026674 80 VDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTE-----LAAAQEKLH 154 (235)
Q Consensus 80 ~~EL~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~e-----l~~L~e~~~ 154 (235)
.++|+..++|-.+....+... .+.++.-+..+.++...+-+.|..+...+.-.+.+++ +..+ +....++..
T Consensus 363 ~~~l~~~~~~~e~~kk~~e~k--~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~--~~~e~~~~~~~s~d~~I~ 438 (493)
T KOG0804|consen 363 ADSLKQESSDLEAEKKIVERK--LQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLK--ELEEREKEALGSKDEKIT 438 (493)
T ss_pred HHhhhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 026674 155 DLERQKEQLL 164 (235)
Q Consensus 155 ek~~q~~~l~ 164 (235)
+++.|+..|+
T Consensus 439 dLqEQlrDlm 448 (493)
T KOG0804|consen 439 DLQEQLRDLM 448 (493)
T ss_pred HHHHHHHhHh
No 256
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=27.37 E-value=6e+02 Score=24.93 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 026674 146 LAAAQEKLHDLERQKE 161 (235)
Q Consensus 146 l~~L~e~~~ek~~q~~ 161 (235)
|+.|-+++..++.+.+
T Consensus 153 l~~l~~qr~ql~aq~q 168 (499)
T COG4372 153 LKTLAEQRRQLEAQAQ 168 (499)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 257
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=27.36 E-value=6e+02 Score=24.93 Aligned_cols=12 Identities=42% Similarity=0.783 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 026674 201 IGAFVQKYKKLR 212 (235)
Q Consensus 201 vd~FL~qF~e~R 212 (235)
++.+-+.|...|
T Consensus 278 le~yyQ~y~~lr 289 (499)
T COG4372 278 LEAYYQAYVRLR 289 (499)
T ss_pred HHHHHHHHHHHH
Confidence 444444555444
No 258
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=27.23 E-value=6.1e+02 Score=24.96 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=7.9
Q ss_pred HHhcCCCCHHHHHHH
Q 026674 193 QLLDRELDIGAFVQK 207 (235)
Q Consensus 193 ~FL~Geidvd~FL~q 207 (235)
.|+++++-+.+-..+
T Consensus 108 e~~n~~~~l~~~~~~ 122 (459)
T KOG0288|consen 108 EFENAELALREMRRK 122 (459)
T ss_pred hhccchhhHHHHHHH
Confidence 456666555544433
No 259
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=27.12 E-value=7e+02 Score=25.62 Aligned_cols=79 Identities=13% Similarity=0.241 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHhHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHH
Q 026674 143 TTELAAAQEKLHDLERQKEQLLKLYSPASL-LKRIQEAMNKTEEESENLHRQLLD---RELDIGAFVQKYKKLRTTYHRR 218 (235)
Q Consensus 143 ~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL-~~~Lq~a~~eaEeeSE~Lae~FL~---Geidvd~FL~qF~e~RklyH~R 218 (235)
+..+..++.++.++..+...+...|.++.= ...|+......+.+-..+..++.. .+..+...-+++.-.|.+|-.-
T Consensus 310 l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~l 389 (726)
T PRK09841 310 LEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQL 389 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777776666666666655543 244555566666666666555421 2345777788888888888764
Q ss_pred HHH
Q 026674 219 ALV 221 (235)
Q Consensus 219 r~K 221 (235)
-.|
T Consensus 390 L~r 392 (726)
T PRK09841 390 LNR 392 (726)
T ss_pred HHH
Confidence 333
No 260
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=26.96 E-value=3.8e+02 Score=24.33 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHh
Q 026674 112 ELHRETLQIARDN 124 (235)
Q Consensus 112 ~l~~~N~~LAe~N 124 (235)
++.++|++|-++|
T Consensus 70 ~l~~EN~~Lr~e~ 82 (283)
T TIGR00219 70 NLEYENYKLRQEL 82 (283)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 261
>PRK10698 phage shock protein PspA; Provisional
Probab=26.56 E-value=4.4e+02 Score=23.07 Aligned_cols=18 Identities=17% Similarity=0.409 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhHHHHHHH
Q 026674 173 LKRIQEAMNKTEEESENL 190 (235)
Q Consensus 173 ~~~Lq~a~~eaEeeSE~L 190 (235)
..++..-|.+.|.+++..
T Consensus 168 f~rmE~ki~~~Ea~aea~ 185 (222)
T PRK10698 168 FESFERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHHHHHhHh
Confidence 345777777777777765
No 262
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=26.56 E-value=2.4e+02 Score=23.23 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=16.3
Q ss_pred ccCCHHHHHHHhcCHHHHHHHHHhc--HHHHHHHHHHHHHH
Q 026674 76 KDKSVDELRKLLADKDAYRQFLLSI--DQVKIQNNIRDELH 114 (235)
Q Consensus 76 ~~LS~~EL~eLL~d~d~l~~~v~~l--~~vq~l~~~~e~l~ 114 (235)
..+|.++|-.|-= -.|+.-+..+ ++|-.+...+..|+
T Consensus 22 d~lsDd~LvsmSV--ReLNr~LrG~~reEVvrlKQrRRTLK 60 (135)
T KOG4196|consen 22 DRLSDDELVSMSV--RELNRHLRGLSREEVVRLKQRRRTLK 60 (135)
T ss_pred CCcCHHHHHHhhH--HHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 4556665554321 1233333333 34445554454444
No 263
>KOG4094 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.53 E-value=3.5e+02 Score=22.96 Aligned_cols=18 Identities=11% Similarity=0.322 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 026674 200 DIGAFVQKYKKLRTTYHR 217 (235)
Q Consensus 200 dvd~FL~qF~e~RklyH~ 217 (235)
++.+|-+.|..++-..|+
T Consensus 128 ems~FYk~FL~kn~~~hm 145 (178)
T KOG4094|consen 128 EMSEFYKDFLNKNHVAHM 145 (178)
T ss_pred HHHHHHHHHHhhhHHHHH
Confidence 367788888887776665
No 264
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.46 E-value=2.3e+02 Score=21.32 Aligned_cols=6 Identities=50% Similarity=0.556 Sum_probs=2.2
Q ss_pred CCHHHH
Q 026674 78 KSVDEL 83 (235)
Q Consensus 78 LS~~EL 83 (235)
||..||
T Consensus 46 Ls~~eL 51 (100)
T PF01486_consen 46 LSLKEL 51 (100)
T ss_pred cchHHH
Confidence 333333
No 265
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=26.39 E-value=4.5e+02 Score=23.15 Aligned_cols=45 Identities=29% Similarity=0.374 Sum_probs=25.5
Q ss_pred HhccCCHHHHHHHhcC-HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 026674 74 LLKDKSVDELRKLLAD-KDAYRQFLLSIDQVKIQNNIRDELHRETLQIA 121 (235)
Q Consensus 74 ~L~~LS~~EL~eLL~d-~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LA 121 (235)
.+.+...+|+.+||++ -+.|..|+ ..++++...++.|...+...+
T Consensus 19 ~~rGy~~eEVdeFLD~V~~dye~~l---~e~~~l~~~i~~L~~~l~~~~ 64 (212)
T COG3599 19 GFRGYDEEEVDEFLDDVIDDYEQLL---DENEDLEDEIDELKEELKEAA 64 (212)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh
Confidence 5677777777777766 44444444 344555555555554444443
No 266
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=26.37 E-value=3.6e+02 Score=22.01 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 102 QVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 102 ~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
.++.+......+-.++.+|-..|-..+.+|+.+..++
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555666666666666666666666555
No 267
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.23 E-value=9e+02 Score=26.60 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026674 109 IRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLER 158 (235)
Q Consensus 109 ~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~ 158 (235)
+++++.+.....-++--+....|++.+.++ ..-..++..++.+++++..
T Consensus 419 e~~~~e~~l~~~~e~i~~l~~si~e~~~r~-~~~~~~~~~~k~~~del~~ 467 (1200)
T KOG0964|consen 419 EIEDLESELKEKLEEIKELESSINETKGRM-EEFDAENTELKRELDELQD 467 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444455444 1222344455555555444
No 268
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=26.22 E-value=4.7e+02 Score=23.25 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=37.6
Q ss_pred hcCHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 026674 87 LADKDAYRQFLLSIDQ-VKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELA-AAQEKLHDLERQKEQL 163 (235)
Q Consensus 87 L~d~d~l~~~v~~l~~-vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~-~L~e~~~ek~~q~~~l 163 (235)
.+|+..+..-+..+.. .+++.+....|+.....+...+|+-. +|+.++ ..+ .++..|++.++.|+..
T Consensus 55 ~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~-----lK~dLr-----~vK~d~KK~fdK~~~dyE~~ 123 (215)
T cd07642 55 CRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSL-----LKGDLK-----GVKGDLKKPFDKAWKDYETK 123 (215)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-----HHHHHH-----HhHHHHHHHHHHHHHHHHHH
Confidence 4454555555554443 36677777777766666655555444 333332 223 5666777777777743
No 269
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=26.22 E-value=3.4e+02 Score=21.60 Aligned_cols=8 Identities=25% Similarity=0.443 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 026674 131 MIELRNQS 138 (235)
Q Consensus 131 L~elR~ql 138 (235)
++++|.+|
T Consensus 97 ie~lk~~L 104 (139)
T PF05615_consen 97 IEELKEEL 104 (139)
T ss_pred HHHHHHHH
Confidence 44444433
No 270
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=26.03 E-value=4.9e+02 Score=25.20 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 100 IDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 100 l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
++.++....++++++..++.. -.|++++|+.++
T Consensus 72 HrDy~s~k~ek~d~~~klk~~------~~p~~deL~~~l 104 (424)
T KOG2880|consen 72 HRDYRSVKPEKEDIRKKLKEE------AFPRIDELKAKL 104 (424)
T ss_pred CcchhhhchhHHHHHHHHHHH------hhhhHHHHHHHH
Confidence 445555566677776666643 478888898877
No 271
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=26.03 E-value=6.6e+02 Score=25.87 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=39.3
Q ss_pred HHHHHhcCHH-HHHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 026674 82 ELRKLLADKD-AYRQFLLSIDQVK-IQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEK 152 (235)
Q Consensus 82 EL~eLL~d~d-~l~~~v~~l~~vq-~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~ 152 (235)
.+...|+..| .+..+..++..++ .+..+++...+++..|-..+-++...|++++.++. .+..|..++.+
T Consensus 282 ~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~--~~sDYeeIK~E 352 (629)
T KOG0963|consen 282 ALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLN--SRSDYEEIKKE 352 (629)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccHHHHHHH
Confidence 3333444432 3333443444443 23346777777888888888888888888888773 23334444443
No 272
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=25.86 E-value=3.8e+02 Score=24.88 Aligned_cols=10 Identities=30% Similarity=0.640 Sum_probs=3.8
Q ss_pred HHHHHHHHhH
Q 026674 175 RIQEAMNKTE 184 (235)
Q Consensus 175 ~Lq~a~~eaE 184 (235)
+|+..+..++
T Consensus 267 ~l~~~~~~~~ 276 (344)
T PF12777_consen 267 ELEEEIEETE 276 (344)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3443333333
No 273
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=25.69 E-value=6.1e+02 Score=24.44 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=11.1
Q ss_pred HHhHHHHHHHHHHHhcCC
Q 026674 181 NKTEEESENLHRQLLDRE 198 (235)
Q Consensus 181 ~eaEeeSE~Lae~FL~Ge 198 (235)
.++--++.+.++.|+.++
T Consensus 165 ~e~~~~l~a~re~fL~~~ 182 (377)
T KOG2896|consen 165 IELRNELVAKRELFLEQR 182 (377)
T ss_pred HHHHHHHHHHHHhhHhHH
Confidence 445555666677777654
No 274
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=25.55 E-value=6e+02 Score=24.31 Aligned_cols=6 Identities=0% Similarity=-0.025 Sum_probs=2.4
Q ss_pred HHHHHH
Q 026674 214 TYHRRA 219 (235)
Q Consensus 214 lyH~Rr 219 (235)
+|..|.
T Consensus 272 ~~q~e~ 277 (405)
T KOG2010|consen 272 KLQLEE 277 (405)
T ss_pred HHHHHH
Confidence 344433
No 275
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=25.52 E-value=5.2e+02 Score=23.57 Aligned_cols=111 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 026674 103 VKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNK 182 (235)
Q Consensus 103 vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~e 182 (235)
++.-+..++++..--..|++.|..+...|...-+.+ ..+..++=.-++.|.....-++ |+....+..++....+
T Consensus 1 i~~rr~sl~el~~h~~~L~~~N~~L~~~IqdtE~st-~~~Vr~lLqqy~~~~~~i~~le-----~~~~~~l~~ak~eLqe 74 (258)
T PF15397_consen 1 IRNRRTSLQELKKHEDFLTKLNKELIKEIQDTEDST-ALKVRKLLQQYDIYRTAIDILE-----YSNHKQLQQAKAELQE 74 (258)
T ss_pred CccHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhH-HHHHHHHHHHHHHHHHHHHHHH-----ccChHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHH------hcCCC----CHHHHHHHHHHHHHHHHHHHHH
Q 026674 183 TEEESENLHRQL------LDREL----DIGAFVQKYKKLRTTYHRRALV 221 (235)
Q Consensus 183 aEeeSE~Lae~F------L~Gei----dvd~FL~qF~e~RklyH~Rr~K 221 (235)
.++..+.=...+ |+++| .-=.||..|++ +.|=.|.++
T Consensus 75 ~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD--~EYPvK~vq 121 (258)
T PF15397_consen 75 WEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD--HEYPVKAVQ 121 (258)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHH
No 276
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.51 E-value=5.1e+02 Score=23.43 Aligned_cols=55 Identities=20% Similarity=0.380 Sum_probs=39.4
Q ss_pred HHHHHHHHHhHHHHH-------HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 026674 174 KRIQEAMNKTEEESE-------NLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKTH 228 (235)
Q Consensus 174 ~~Lq~a~~eaEeeSE-------~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~a~~~~ 228 (235)
.-|+.++.+++++=+ .=+=.|++.+++.-.++..|.+.-..||.+.+-.+-.-..
T Consensus 165 e~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~~~l~~Lv~AQleYHr~A~eiLe~l~~ 226 (248)
T cd07619 165 DALREEMEEAANRMEICRDQLSADMYSFVAKEIDYANYFQTLIEVQAEYHRKSLELLQSVLP 226 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555433 1123778888999999999999999999999886655443
No 277
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=25.50 E-value=3.5e+02 Score=21.52 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=14.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026674 130 RMIELRNQSKIIRTTELAAAQEKLHDLER 158 (235)
Q Consensus 130 ~L~elR~ql~~~~~~el~~L~e~~~ek~~ 158 (235)
.++.+|.++ ++-|..+..+...+..++.
T Consensus 87 s~~RL~~eV-~~Py~~~~~~~~~L~rl~~ 114 (132)
T PF10392_consen 87 SYERLRSEV-IEPYEKIQKLTSQLERLHQ 114 (132)
T ss_pred HHHHHHHHH-hhHHHHHHHHHHHHHHHHH
Confidence 344555555 4555555555555544444
No 278
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=25.40 E-value=83 Score=21.09 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=10.3
Q ss_pred cCCCCHHHHHHHH
Q 026674 196 DRELDIGAFVQKY 208 (235)
Q Consensus 196 ~Geidvd~FL~qF 208 (235)
+|.|++++|+.=|
T Consensus 54 dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 54 DGRISFDEFLNFM 66 (66)
T ss_dssp SSSEEHHHHHHHH
T ss_pred cCCCcHHHHhccC
Confidence 6889999998643
No 279
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=25.25 E-value=2.5e+02 Score=19.73 Aligned_cols=36 Identities=11% Similarity=-0.017 Sum_probs=22.2
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 026674 94 RQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKEL 129 (235)
Q Consensus 94 ~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~ 129 (235)
+.+...+..+-.+-.++..+..++..|.++|.+++.
T Consensus 19 ~~L~~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr~ 54 (60)
T PF14775_consen 19 DALENFLKRYNKVLLDRAALIQEKESLEQQNEELRS 54 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555556777777777777777766553
No 280
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.21 E-value=4.7e+02 Score=23.48 Aligned_cols=32 Identities=13% Similarity=0.293 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 107 NNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 107 ~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
..+++..+..|.+|-+++-..+..+..+|.++
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev 116 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISSLRREV 116 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777888888777766666666666666665
No 281
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=25.11 E-value=5.7e+02 Score=26.47 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=19.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 026674 131 MIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPA 170 (235)
Q Consensus 131 L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp~ 170 (235)
++++|..+. .+-.||.+|+-..+.-+.+++++.+.-+|.
T Consensus 116 iEelk~~i~-~~q~eL~~Lk~~ieqaq~~~~El~~~n~pk 154 (907)
T KOG2264|consen 116 IEELKRLIP-QKQLELSALKGEIEQAQRQLEELRETNNPK 154 (907)
T ss_pred HHHHHHHHH-HhHHHHHHHHhHHHHHHHHHHHHHhhcCCc
Confidence 344554442 233455555555555555555555444443
No 282
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=25.09 E-value=5.7e+02 Score=23.85 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=15.1
Q ss_pred HHHHhHHHHHHHHHHHhcCCCCHHHH
Q 026674 179 AMNKTEEESENLHRQLLDRELDIGAF 204 (235)
Q Consensus 179 a~~eaEeeSE~Lae~FL~Geidvd~F 204 (235)
.+..--++-|.+|++.|+....+|.|
T Consensus 278 e~k~fK~qlE~ladqLl~ks~~id~f 303 (353)
T PF01540_consen 278 EMKKFKNQLENLADQLLEKSRQIDEF 303 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccchh
Confidence 34444556677777777654444444
No 283
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=25.08 E-value=1.2e+03 Score=27.72 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHHHH
Q 026674 146 LAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRE-----LDIGAFVQKYKKLRTTYHRRAL 220 (235)
Q Consensus 146 l~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Ge-----idvd~FL~qF~e~RklyH~Rr~ 220 (235)
++.|..+|+++++..++--...-...=...|......+++.-+.|.....+|+ .+|.+.+++-.-.=..+-.+.-
T Consensus 1350 l~~L~~~W~~Le~~t~~Kg~~L~qA~~q~~~~qs~~D~~~~l~~le~qL~S~D~G~DL~Svn~llkKqq~lEsem~~~~~ 1429 (2473)
T KOG0517|consen 1350 LRELHKQWDELEKTTQEKGRKLFQANRQELLLQSLADAKKKLDELESQLQSDDTGKDLTSVNDLLKKQQVLESEMEVRAQ 1429 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888876664443333333444556667777777788888877654 2577777766555444444433
No 284
>cd05532 POLBc_alpha DNA polymerase type-B alpha subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase (Pol) alpha is almost exclusively required for the initiation of DNA replication and the priming of Okazaki fragments during elongation. In most organisms no specific repair role, other than check point control, has been assigned to this enzyme. Pol alpha contains both polymerase and exonuclease domains, but lacks exonuclease activity suggesting that the exonuclease domain may be for structural purposes only.
Probab=25.01 E-value=68 Score=30.57 Aligned_cols=49 Identities=16% Similarity=0.355 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 026674 185 EESENLHRQLLDRELDIGAF---------VQKYKKLRTTYHRRALVHLSAKTHSVDAG 233 (235)
Q Consensus 185 eeSE~Lae~FL~Geidvd~F---------L~qF~e~RklyH~Rr~K~~a~~~~~~~~~ 233 (235)
+--+.+.+++.+|++++++| ++.|.......|.+.++++..+.....+|
T Consensus 273 ~~~~~~~~~l~~~~~~~~~lii~k~l~k~~~~Y~~~~~~~hv~~A~rl~~~g~~~~~G 330 (400)
T cd05532 273 EYLRKINEDLRNGKIPLEKFIITKQLTKNPEEYPDKKSLPHVQVALRMNKRGRKVKAG 330 (400)
T ss_pred HHHHHHHHHHHcCCCCHHHEEEeecccCChHHcCCCCCCcHHHHHHHHHHcCCCCCCC
Confidence 33445556778899999999 56788765678988888776654333444
No 285
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.00 E-value=4.9e+02 Score=23.05 Aligned_cols=91 Identities=10% Similarity=0.076 Sum_probs=53.2
Q ss_pred hccCCHHHHHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 026674 75 LKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLH 154 (235)
Q Consensus 75 L~~LS~~EL~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ 154 (235)
...-+..+|.-|++.=..+.+++.++|.+-.+.+---.-..+.+.+..+.---..+.+..+..|-+.-|.-++++.--..
T Consensus 93 faeQpk~Dl~Pl~d~L~~Y~G~L~~fPDii~v~KgA~~KvKE~~k~~~egkm~~~~~~~v~~R~dviSya~~AEm~HFh~ 172 (207)
T cd07670 93 FAEQPRQDLDPVMDLLALYQGHLANFPDIIHVQKGALTKVKESKKHVEEGKMELQKADGIQDRCNIISFATLAEIHHFHK 172 (207)
T ss_pred HHhcchhhhHHHHHHHHHHhCccccCCchHHHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999998888899999999988777664333344555554322111122344555554455655555544433
Q ss_pred HHHHHHHHHHh
Q 026674 155 DLERQKEQLLK 165 (235)
Q Consensus 155 ek~~q~~~l~~ 165 (235)
.....+...+.
T Consensus 173 ~r~~d~k~~M~ 183 (207)
T cd07670 173 IRVRDFKSQMQ 183 (207)
T ss_pred HHHhhHHHHHH
Confidence 33334443333
No 286
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=24.93 E-value=3e+02 Score=20.57 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHH
Q 026674 113 LHRETLQIARDNLDKELRMIELR 135 (235)
Q Consensus 113 l~~~N~~LAe~NL~~e~~L~elR 135 (235)
|+.+|++|-..-..++.+|+.+.
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn 25 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLN 25 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Confidence 44555555544444555444444
No 287
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=24.85 E-value=4.6e+02 Score=22.71 Aligned_cols=7 Identities=14% Similarity=0.093 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 026674 142 RTTELAA 148 (235)
Q Consensus 142 ~~~el~~ 148 (235)
.++.|.+
T Consensus 80 DFDKL~E 86 (205)
T PF15079_consen 80 DFDKLHE 86 (205)
T ss_pred hHHHHHH
Confidence 3444433
No 288
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.70 E-value=4.3e+02 Score=22.31 Aligned_cols=48 Identities=8% Similarity=0.088 Sum_probs=30.8
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026674 176 IQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAK 226 (235)
Q Consensus 176 Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~a~~ 226 (235)
+..-....++.++.+...|++ +|.+++.=-...|.+...|..|..-+.
T Consensus 70 ~~~~s~~~~~l~~~~~~~f~~---~Lkd~~~y~~s~k~~lk~R~~kq~d~e 117 (185)
T cd07628 70 LSQFSTSLRVLNKYTDENYLT---SLKDLLHYILSLKNLIKLRDQKQLDYE 117 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334444555666666667766 566666666667777778877766543
No 289
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=24.69 E-value=7e+02 Score=24.78 Aligned_cols=129 Identities=13% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHH--------
Q 026674 81 DELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEK-------- 152 (235)
Q Consensus 81 ~EL~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~-------- 152 (235)
+....+-.-.+.+..+-.....++.+...+..+...+..+...+-+.+.+++..|... .++...+...+++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~-~ek~~~l~~~~~~L~~~F~~L 118 (475)
T PRK10361 40 EMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHA-DDKIRQMINSEQRLSEQFENL 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 026674 153 ----LHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKL 211 (235)
Q Consensus 153 ----~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~ 211 (235)
|+++.++..+.... +.+.|+.=|+..+..-+..-+++...-..+...+..-|+.-++.
T Consensus 119 A~~ile~k~~~f~~~~~~-~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~ 180 (475)
T PRK10361 119 ANRIFEHSNRRVDEQNRQ-SLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQL 180 (475)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 290
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=24.54 E-value=3.1e+02 Score=25.48 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 107 NNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 107 ~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
+.+.+.++.+...|.++|-++..++.++-+++
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI 278 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREI 278 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666655555555554443
No 291
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=24.46 E-value=7e+02 Score=24.71 Aligned_cols=15 Identities=20% Similarity=0.209 Sum_probs=6.5
Q ss_pred CchhHhhhhHHhccC
Q 026674 64 SPAEAAGIIALLKDK 78 (235)
Q Consensus 64 ~p~~~~~~f~~L~~L 78 (235)
.|++...+-..++-|
T Consensus 207 ~~~E~e~L~~e~~~L 221 (563)
T TIGR00634 207 QPGEDEALEAEQQRL 221 (563)
T ss_pred CCCcHHHHHHHHHHH
Confidence 444444444444433
No 292
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.37 E-value=4.6e+02 Score=22.59 Aligned_cols=22 Identities=14% Similarity=0.350 Sum_probs=8.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHH
Q 026674 115 RETLQIARDNLDKELRMIELRN 136 (235)
Q Consensus 115 ~~N~~LAe~NL~~e~~L~elR~ 136 (235)
..+..+.+..-.+..+|..+++
T Consensus 82 ~~~r~~~~klk~~~~el~k~~~ 103 (194)
T PF15619_consen 82 EQERELERKLKDKDEELLKTKD 103 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 293
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.27 E-value=8.2e+02 Score=25.46 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 026674 147 AAAQEKLHDLERQKEQLLKL 166 (235)
Q Consensus 147 ~~L~e~~~ek~~q~~~l~~~ 166 (235)
+.|.++|++...+++.|..+
T Consensus 596 e~LaeR~e~a~d~Qe~L~~R 615 (717)
T PF10168_consen 596 EKLAERYEEAKDKQEKLMKR 615 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544433
No 294
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=23.94 E-value=1.7e+02 Score=32.46 Aligned_cols=52 Identities=23% Similarity=0.413 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCcccCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC-CCCCch
Q 026674 12 AQPRPQDVTSQSWYPPSVVSPDSSRPA-TPSMSSFGSLNLQRPTEQSQPL-SHVSPA 66 (235)
Q Consensus 12 ~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ 66 (235)
....|.-.||++-|.|...|=|++.|+ +|+++ ++..+-||-...|. +..||.
T Consensus 1537 sptspsysptspsysptspsysptsp~ysptsp---sysptspsys~~~~ysp~sp~ 1590 (1605)
T KOG0260|consen 1537 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSTSPSYSPTSPS 1590 (1605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCccCCCCCCCCCCC
No 295
>smart00340 HALZ homeobox associated leucin zipper.
Probab=23.83 E-value=1.7e+02 Score=19.60 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH
Q 026674 111 DELHRETLQIARDNLDKELRMIELRN 136 (235)
Q Consensus 111 e~l~~~N~~LAe~NL~~e~~L~elR~ 136 (235)
+-|+.-.+.|+++|-.++-++.+||.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556667777777777777777774
No 296
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=23.81 E-value=3.1e+02 Score=21.54 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 026674 102 QVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQ 137 (235)
Q Consensus 102 ~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~q 137 (235)
.+..+...+....++|..|...|..++.++..|++.
T Consensus 51 ~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 51 DVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344555566677778888888888888777777775
No 297
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=23.71 E-value=4.6e+02 Score=25.15 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 83 LRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARD-NLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKE 161 (235)
Q Consensus 83 L~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~-NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~ 161 (235)
+.+|+.-.........+++.++.-++.....+..+..-.+. --+...++.+++.++ +.++.+..+++.++.
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~--------~~~~~~~~~~~~~~~ 100 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEEL--------TELSAALKALEAELQ 100 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q ss_pred HHH
Q 026674 162 QLL 164 (235)
Q Consensus 162 ~l~ 164 (235)
++.
T Consensus 101 ~~~ 103 (418)
T TIGR00414 101 DKL 103 (418)
T ss_pred HHH
No 298
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.66 E-value=8.2e+02 Score=25.22 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCHHHHHHHHHHH
Q 026674 104 KIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLER----QKEQLLKLYSPASLLKRIQEA 179 (235)
Q Consensus 104 q~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~----q~~~l~~~~Sp~aL~~~Lq~a 179 (235)
...+.+.+.+...+..+-+.|-..+.+-..+|++++--++.|. .|-.+|.+++. -+..++.--+.+.=+.-|+..
T Consensus 124 ~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~-RllseYSELEEENIsLQKqVs~LR~sQVEyEglkhe 202 (772)
T KOG0999|consen 124 TNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREA-RLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHE 202 (772)
T ss_pred HHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHH
Confidence 4445577788888888887777777666677777653333332 23333444332 122333333445556667777
Q ss_pred HHHhHHHHHHHHHH
Q 026674 180 MNKTEEESENLHRQ 193 (235)
Q Consensus 180 ~~eaEeeSE~Lae~ 193 (235)
+...+++.+-|-.+
T Consensus 203 ikRleEe~elln~q 216 (772)
T KOG0999|consen 203 IKRLEEETELLNSQ 216 (772)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777665444
No 299
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=23.59 E-value=3.7e+02 Score=21.18 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=17.0
Q ss_pred HHHHHHHhcCHHHHHHHHHhcHHHHH
Q 026674 80 VDELRKLLADKDAYRQFLLSIDQVKI 105 (235)
Q Consensus 80 ~~EL~eLL~d~d~l~~~v~~l~~vq~ 105 (235)
.+||.+|-..-..|...+..+.+++.
T Consensus 8 ~~~l~DL~~rYs~L~s~lkKfkq~q~ 33 (107)
T PRK15365 8 FSEYRDLEQSYMQLNHCLKKFHQIRA 33 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777777777766655543
No 300
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=23.55 E-value=3.2e+02 Score=21.64 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 026674 100 IDQVKIQNNIRDELHRETLQIARDNLDKELR 130 (235)
Q Consensus 100 l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~ 130 (235)
+.+|-+++.-+++|-......-++||.+..+
T Consensus 62 ItQVLELQnTLdDLSqRVdsVKEEnLKLrSE 92 (120)
T KOG3650|consen 62 ITQVLELQNTLDDLSQRVDSVKEENLKLRSE 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 4567777888888888888888888877643
No 301
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.50 E-value=2.6e+02 Score=28.85 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 104 KIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 104 q~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
|+++.+++++...+++|-+.-+.++.+|..||..+
T Consensus 103 qel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~i 137 (907)
T KOG2264|consen 103 QELNSEIEEINTKIEELKRLIPQKQLELSALKGEI 137 (907)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Confidence 34555555666666666555555555555555544
No 302
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=23.42 E-value=3.9e+02 Score=21.36 Aligned_cols=116 Identities=15% Similarity=0.146 Sum_probs=52.2
Q ss_pred HHHHHHhcHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 026674 93 YRQFLLSIDQVKIQNN---IRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSP 169 (235)
Q Consensus 93 l~~~v~~l~~vq~l~~---~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp 169 (235)
|..++.+-+.+..+-. .+..+......+-..|.......-.+..++ ...-.++.....++..+..++..+...+.-
T Consensus 9 L~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l-~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~ 87 (150)
T PF07200_consen 9 LQELLSDEEKLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPEL-EELRSQLQELYEELKELESEYQEKEQQQDE 87 (150)
T ss_dssp HHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554443333322 244455555555566666665554555554 233345555555555555555544432221
Q ss_pred ---HHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 026674 170 ---ASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYK 209 (235)
Q Consensus 170 ---~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~ 209 (235)
..-...|......+=.++|+-.+...+.-++=+.=|+.|+
T Consensus 88 l~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~~d~~~Fl 130 (150)
T PF07200_consen 88 LSSNYSPDALLARLQAAASEAEEESEELAEEFLDGEIDVDDFL 130 (150)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SSSHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 1112335555555556666655555444344333345553
No 303
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=23.31 E-value=5.5e+02 Score=23.05 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHH
Q 026674 100 IDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSK--IIRTTELAAAQEKLHDLERQKEQLLKLY--SPASLLKR 175 (235)
Q Consensus 100 l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~--~~~~~el~~L~e~~~ek~~q~~~l~~~~--Sp~aL~~~ 175 (235)
...|-+...++......-...+..-..-+..+..|...++ |.+..=+=.++..|..+...+....... .-...+..
T Consensus 127 ~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~ 206 (239)
T PF05276_consen 127 TQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSR 206 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333344444444433331 2222223344444444433322211111 22344566
Q ss_pred HHHHHHHhHHHHHHHHHHHh
Q 026674 176 IQEAMNKTEEESENLHRQLL 195 (235)
Q Consensus 176 Lq~a~~eaEeeSE~Lae~FL 195 (235)
...++..+|.-||+|+++=.
T Consensus 207 Y~~ALrnLE~ISeeIH~~R~ 226 (239)
T PF05276_consen 207 YSEALRNLEQISEEIHEQRR 226 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 78888889999999887643
No 304
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.29 E-value=8.3e+02 Score=25.17 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHH
Q 026674 115 RETLQIARDNLDKELRMIELRN 136 (235)
Q Consensus 115 ~~N~~LAe~NL~~e~~L~elR~ 136 (235)
.+--+|-++|+.++-.+..||.
T Consensus 170 seYSELEEENIsLQKqVs~LR~ 191 (772)
T KOG0999|consen 170 SEYSELEEENISLQKQVSNLRQ 191 (772)
T ss_pred HHHHHHHHhcchHHHHHHHHhh
Confidence 3444445555555555555554
No 305
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=23.26 E-value=5.2e+02 Score=22.79 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=36.5
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026674 177 QEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAK 226 (235)
Q Consensus 177 q~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~a~~ 226 (235)
+....++-+........|++.+.+--..|..|.+.-..||.+....+..-
T Consensus 163 e~kfe~s~E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~~~~e~L~~l 212 (223)
T cd07592 163 EEKFEESKELAENSMFNLLENDVEQVSQLSALVEAQLDYHRQSAEILEEL 212 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555667888877887889999999999999988876543
No 306
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=23.24 E-value=4.4e+02 Score=21.88 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=33.0
Q ss_pred CHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 89 DKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 89 d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
|+..|..|-+.|..|-.......+....++.|-+.--..+.+..+.|..+
T Consensus 1 Dp~~It~w~~ALryv~~~v~~n~~~~~~Ir~Li~~Q~~~Er~w~~~Re~l 50 (150)
T PF10454_consen 1 DPSTITTWPAALRYVMKTVAQNPEFLQRIRRLIKEQHDHERQWWEGREAL 50 (150)
T ss_pred CchhhhcHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666777777665556666666677666
No 307
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=23.11 E-value=5.8e+02 Score=23.25 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=27.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHh-cCCCCHHHHHHHHH
Q 026674 160 KEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLL-DRELDIGAFVQKYK 209 (235)
Q Consensus 160 ~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL-~Geidvd~FL~qF~ 209 (235)
++..+..|.|+. +.+.-+-..++..+.+.+++. +|. |+++..++|-
T Consensus 135 i~~~y~~~~~~~---~~~~I~~~~~~~A~~i~~~l~~~G~-dF~~lA~~~S 181 (310)
T PRK01326 135 YKKAYEEYTPEV---TAQIIRLDNEDKAKSVLEEAKAEGA-DFAQIAKENT 181 (310)
T ss_pred HHHHHHHhCccc---cchhhhHhhhHHHHHHHHHHHhCCC-CHHHHHHHhC
Confidence 333444455542 222233345667788888877 476 7887777773
No 308
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=23.00 E-value=6.5e+02 Score=23.78 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 026674 142 RTTELAAAQEKLHD 155 (235)
Q Consensus 142 ~~~el~~L~e~~~e 155 (235)
+++++..++..|..
T Consensus 26 Kleel~~lQ~~C~s 39 (330)
T PF07851_consen 26 KLEELSKLQDKCSS 39 (330)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 309
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=23.00 E-value=1.7e+02 Score=31.92 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 026674 128 ELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAM 180 (235)
Q Consensus 128 e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~ 180 (235)
.+++++++.+| .+.=.+++.+.+.|++|+.+-+.+. .+..+++++...++
T Consensus 397 ~~~~e~~~~~L-~E~Ek~mael~etW~EKl~~aEair--~e~~~~L~emGva~ 446 (1221)
T KOG0245|consen 397 QPEIEELRERL-QETEKIMAELNETWEEKLREAEAIR--MEREALLAEMGVAV 446 (1221)
T ss_pred cccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHhcCcee
Confidence 56788999988 4555678999999999998777553 34455555554443
No 310
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=22.96 E-value=5.4e+02 Score=22.82 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=17.0
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHH
Q 026674 91 DAYRQFLLSIDQVKIQNNIRDELHRE 116 (235)
Q Consensus 91 d~l~~~v~~l~~vq~l~~~~e~l~~~ 116 (235)
+.|++|+.-+..|+..-..|-.+...
T Consensus 109 e~L~eYiR~i~svK~~f~~R~k~~~~ 134 (234)
T cd07664 109 ELLGDYIRLIAAVKGVFDQRMKCWQK 134 (234)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777766666655543
No 311
>PF14495 Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC_V 1IZL 3A0H_V 3A0B_v 1E29_A 1F1C_B 1S5L_V 4FBY_i 3PRR_V 3PRQ_V ....
Probab=22.94 E-value=53 Score=27.12 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=24.4
Q ss_pred CCCCCCchhHhhhhHHhccCCHHHHHHHhcCHHHHHHHHHhcHHH
Q 026674 59 PLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQV 103 (235)
Q Consensus 59 ~~~~~~p~~~~~~f~~L~~LS~~EL~eLL~d~d~l~~~v~~l~~v 103 (235)
.-.||+.. .+++||.+.+|+.++|..+ -+||.--|++
T Consensus 88 ~e~hp~~~-s~di~p~mr~ltdddL~~i-------Ag~IL~~pk~ 124 (135)
T PF14495_consen 88 SELHPSIK-SADIFPKMRNLTDDDLYAI-------AGYILRQPKV 124 (135)
T ss_dssp TTTS-STT-CTTTSGGGTS--HHHHHHH-------HHHHHHHHHH
T ss_pred HHhCcCcc-cchhhHhhcCCCHHHHHHH-------HHHHHhcccc
Confidence 34577666 7899999999999999864 4566544443
No 312
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=22.82 E-value=8.7e+02 Score=25.23 Aligned_cols=133 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHhcCHHHHHHHHHhcHH--------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 026674 80 VDELRKLLADKDAYRQFLLSIDQ--------VKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQE 151 (235)
Q Consensus 80 ~~EL~eLL~d~d~l~~~v~~l~~--------vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e 151 (235)
..||+..-..+..|..-|..+.. +..++.+.++|...+-.|-..=-.-...|..+..++ .+.-..-..++.
T Consensus 431 raeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL-~eE~~~R~~lEk 509 (697)
T PF09726_consen 431 RAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRL-AEERRQRASLEK 509 (697)
T ss_pred HHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhcCCHH---------HHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 026674 152 KLHDLERQKEQLLKLYSPA---------SLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRT 213 (235)
Q Consensus 152 ~~~ek~~q~~~l~~~~Sp~---------aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~Rk 213 (235)
++.+-.+...+--..-... .--.-++....++|.|...|-.+....+=.+.....+..+.|+
T Consensus 510 QL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 510 QLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 313
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=22.82 E-value=1.1e+03 Score=26.39 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=13.3
Q ss_pred hccCCHHHHHHHhcCHHHHHHHHHhcHHH
Q 026674 75 LKDKSVDELRKLLADKDAYRQFLLSIDQV 103 (235)
Q Consensus 75 L~~LS~~EL~eLL~d~d~l~~~v~~l~~v 103 (235)
|-.++..+|..|-++=+.++.+=..+..+
T Consensus 214 l~~l~~~~i~~l~e~~~~~~~~~~~le~l 242 (1353)
T TIGR02680 214 LPPLDDDELTDVADALEQLDEYRDELERL 242 (1353)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444444444333333
No 314
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=22.49 E-value=8.1e+02 Score=25.39 Aligned_cols=23 Identities=4% Similarity=0.001 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHH
Q 026674 110 RDELHRETLQIARDNLDKELRMI 132 (235)
Q Consensus 110 ~e~l~~~N~~LAe~NL~~e~~L~ 132 (235)
+.+|++..-+|.-+|.=++.+++
T Consensus 324 KNDLIakVDeL~~E~~vLrgEle 346 (832)
T KOG2077|consen 324 KNDLIAKVDELTCEKDVLRGELE 346 (832)
T ss_pred HHHHHHHHHhhccHHHHHhhHHH
Confidence 34444444444444433443333
No 315
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=22.42 E-value=5.3e+02 Score=22.56 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026674 203 AFVQKYKKLRTTYHRRALV 221 (235)
Q Consensus 203 ~FL~qF~e~RklyH~Rr~K 221 (235)
.-|..|.. ..+-+|..|
T Consensus 165 ~~ieEy~~--~teeLR~e~ 181 (193)
T PF14662_consen 165 KTIEEYRS--ITEELRLEK 181 (193)
T ss_pred HHHHHHHH--HHHHHHHHH
Confidence 33444443 234455555
No 316
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.41 E-value=5.2e+02 Score=22.50 Aligned_cols=82 Identities=12% Similarity=0.094 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 026674 104 KIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKT 183 (235)
Q Consensus 104 q~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~ea 183 (235)
+++...+..|+.+...+....|... ++.. +...+..+.+|+.-+..|+....++.. +...-...+.++
T Consensus 71 ~ei~~~~~~Ll~~~~~~l~~~L~~F-----~k~d-----l~~vKe~kK~FdK~s~~~d~al~K~~~--~~k~k~~e~~Ea 138 (200)
T cd07639 71 NHILDSHAELLEATQFSFKQQLQLL-----VKED-----LRGFRDARKEFERGAESLEAALQHNAE--TPRRKAQEVEEA 138 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHhh-----hHHHHHHhhhHhhcchhHHHHHHHHhh--ccccchHHHHHH
Confidence 5555566666655444443444433 2222 234567777787777777765444332 112223356666
Q ss_pred HHHHHHHHHHHhcC
Q 026674 184 EEESENLHRQLLDR 197 (235)
Q Consensus 184 EeeSE~Lae~FL~G 197 (235)
+++-+..-..|-..
T Consensus 139 ~~~l~~~R~~F~~~ 152 (200)
T cd07639 139 AAALLGARATFRDR 152 (200)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666444
No 317
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=22.34 E-value=4.9e+02 Score=27.54 Aligned_cols=79 Identities=13% Similarity=0.136 Sum_probs=45.8
Q ss_pred CHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 026674 89 DKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS-KIIRTTELAAAQEKLHDLERQKEQLLKLY 167 (235)
Q Consensus 89 d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql-~~~~~~el~~L~e~~~ek~~q~~~l~~~~ 167 (235)
|+..+..+...+.....+.+.++.++..++++-+ +-+ +|+..+ .+..+.++..|+--|.++......+...-
T Consensus 53 de~qlr~i~~~~~yl~~L~~Rke~Ilk~IeeqGk----lTd---~L~~~I~~a~~l~eleDLYlpyK~KrRtra~ia~e~ 125 (780)
T COG2183 53 DEVQLRDLEERLEYLRELEERKESILKSIEEQGK----LTD---ELKEQIEAAEELTELEDLYLPYKEKRRTRATIAREK 125 (780)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----chH---HHHHHHHHhhhhhhHHHhcccchHHHHHHHHHhHhh
Confidence 4455666666666666777788888877777664 222 233332 13456677777777777766444444433
Q ss_pred CHHHHHH
Q 026674 168 SPASLLK 174 (235)
Q Consensus 168 Sp~aL~~ 174 (235)
..+-|..
T Consensus 126 GlepLa~ 132 (780)
T COG2183 126 GLEPLAD 132 (780)
T ss_pred ccHHHHH
Confidence 4444433
No 318
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=22.33 E-value=8.1e+02 Score=24.68 Aligned_cols=95 Identities=16% Similarity=0.290 Sum_probs=48.9
Q ss_pred HHHHHHHhcCHH------HHHHHHHhcHHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH---HHHHHHHH
Q 026674 80 VDELRKLLADKD------AYRQFLLSIDQVKIQ---NNIRDELHRETLQIARDNLDKELRMIELRNQSK---IIRTTELA 147 (235)
Q Consensus 80 ~~EL~eLL~d~d------~l~~~v~~l~~vq~l---~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~---~~~~~el~ 147 (235)
.++|+.|+++++ .|+.|+..+..+... ...+..++..-..|+..--..-..|..+|..+. .....++.
T Consensus 94 L~~le~ll~~~~~~sl~~~L~~ff~s~q~la~~P~~~a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vN 173 (552)
T COG1256 94 LSQLESLLSEPSESSLSTLLNDFFNSLQELASNPSDTAARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVN 173 (552)
T ss_pred HHHHHHHhCCCccccHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 467788887765 666676665444211 124555555555555433334455555655441 12234455
Q ss_pred HHHHHHHHHHHHHHHH-HhcCCHHHHHH
Q 026674 148 AAQEKLHDLERQKEQL-LKLYSPASLLK 174 (235)
Q Consensus 148 ~L~e~~~ek~~q~~~l-~~~~Sp~aL~~ 174 (235)
.|-.++.++.++.-.. .....|..|+.
T Consensus 174 sLl~qIa~lN~qI~~~~~~g~~~NdLlD 201 (552)
T COG1256 174 SLLKQIADLNKQIRKVKAAGNDPNDLLD 201 (552)
T ss_pred HHHHHHHHHHHHHHHhccCCCCchhHHH
Confidence 5555555555544432 23345555544
No 319
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=22.24 E-value=2.8e+02 Score=20.58 Aligned_cols=33 Identities=18% Similarity=0.069 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 026674 104 KIQNNIRDELHRETLQIARDNLDKELRMIELRN 136 (235)
Q Consensus 104 q~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ 136 (235)
+.+.+.+++--.+-.+=|+-+-.+.|+|..+=.
T Consensus 28 k~mlklieedgdSfakrAEmyy~kRp~Li~~ve 60 (74)
T PF07765_consen 28 KAMLKLIEEDGDSFAKRAEMYYKKRPELISLVE 60 (74)
T ss_pred HHHHHHhccCcchHHHhhHHHhcccHHHHHHHH
Confidence 333333333233334445556666666554443
No 320
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=22.11 E-value=5.1e+02 Score=22.26 Aligned_cols=17 Identities=18% Similarity=0.503 Sum_probs=7.9
Q ss_pred HHHhcC-CCCHHHHHHHH
Q 026674 192 RQLLDR-ELDIGAFVQKY 208 (235)
Q Consensus 192 e~FL~G-eidvd~FL~qF 208 (235)
..|+.| ++-.+.|++-|
T Consensus 114 ~~l~~Gvem~~~~l~~~L 131 (193)
T COG0576 114 KALLEGVEMTLDQLLDAL 131 (193)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555 33444444433
No 321
>PF11567 PfUIS3: Plasmodium falciparum UIS3 membrane protein; InterPro: IPR021626 UIS3 is a membrane protein essential for sporozoite development in infected hepatocytes. This family is 130-229 of the Plasmodium falciparum UIS3 protein which is compact and has an all alpha-helical structure.PfUIS3(130-229) interacts with lipids, phospholipid lysosomes, the human liver fatty acid-binding protein and with the lipid phosphatidylethanolamine. The interaction with liver fatty acid-binding protein provides the parasite with a method to import essential fatty acids/lipids during rapid growth phases of sporozoites []. ; PDB: 2VWA_C.
Probab=22.10 E-value=87 Score=24.21 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=25.0
Q ss_pred hccCCHHHHHHHhcCHHHHHHHHHhcHHHHHH
Q 026674 75 LKDKSVDELRKLLADKDAYRQFLLSIDQVKIQ 106 (235)
Q Consensus 75 L~~LS~~EL~eLL~d~d~l~~~v~~l~~vq~l 106 (235)
..+||.++-+-+++|-|++..+|..|++-+.+
T Consensus 39 F~~LSn~Qq~y~ind~dY~rkiVQ~L~E~rnv 70 (101)
T PF11567_consen 39 FSNLSNEQQKYLINDYDYIRKIVQTLDENRNV 70 (101)
T ss_dssp HHHS-HHHHHHHTT-HHHHHHHHHHHHHHTT-
T ss_pred HHhcCcHHHHHHhchHHHHHHHHHHHHhcccc
Confidence 56899999999999999999999888766544
No 322
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=22.04 E-value=7.6e+02 Score=24.24 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCHHHHHHHHHH
Q 026674 102 QVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLER---QKEQLLKLYSPASLLKRIQE 178 (235)
Q Consensus 102 ~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~---q~~~l~~~~Sp~aL~~~Lq~ 178 (235)
-.++++...+.-++.|+.||++-++-|+ ..|..++- +|..+.-+-.. -+..+.++-.+. +..+.
T Consensus 273 rlrelnqrL~~EL~~~raLaeqListEE---siRk~vAR-------ELHDeIGQnITAIr~Qa~ivkR~~~~---~q~kq 339 (497)
T COG3851 273 RLRELNQRLQKELARNRALAEQLISTEE---SIRKDVAR-------ELHDEIGQNITAIRTQAGIVKRAADN---AQVKQ 339 (497)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHH---HHHHHHHH-------HHHHHhcchHHHHHHHHHHHHhccCC---HhHHh
Confidence 3566777777777899999999888885 46666642 33333222211 111222222221 23456
Q ss_pred HHHHhHHHHHHHHH
Q 026674 179 AMNKTEEESENLHR 192 (235)
Q Consensus 179 a~~eaEeeSE~Lae 192 (235)
+++..|+-|-.|.+
T Consensus 340 aas~Ie~LslrI~~ 353 (497)
T COG3851 340 AASLIEQLSLRIYD 353 (497)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777754
No 323
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=22.01 E-value=5e+02 Score=22.15 Aligned_cols=15 Identities=7% Similarity=0.033 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHHHH
Q 026674 200 DIGAFVQKYKKLRTT 214 (235)
Q Consensus 200 dvd~FL~qF~e~Rkl 214 (235)
.+++++.+|++.+++
T Consensus 122 ~~eEtv~~~ieqqk~ 136 (165)
T PF09602_consen 122 QYEETVKQLIEQQKL 136 (165)
T ss_pred hHHHHHHHHHHHHHH
Confidence 588888888888774
No 324
>PLN02320 seryl-tRNA synthetase
Probab=22.00 E-value=7.3e+02 Score=24.81 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026674 145 ELAAAQEKLHDLERQKE 161 (235)
Q Consensus 145 el~~L~e~~~ek~~q~~ 161 (235)
++..+++++.+++.++.
T Consensus 145 ~i~~le~~~~~~~~~l~ 161 (502)
T PLN02320 145 GLVTLEEDLVKLTDELQ 161 (502)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555444444444
No 325
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=22.00 E-value=2e+02 Score=21.47 Aligned_cols=31 Identities=26% Similarity=0.523 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHH
Q 026674 166 LYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQK 207 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~q 207 (235)
-|+|.++.+.|. ++...|-.|+|+-++|-..
T Consensus 27 ~~Dp~~i~~~L~-----------~L~~~~e~GEIseeEf~~~ 57 (79)
T PF05120_consen 27 LYDPAAIRRELA-----------ELQEALEAGEISEEEFERR 57 (79)
T ss_pred HcCHHHHHHHHH-----------HHHHHHHcCCCCHHHHHHH
Confidence 489999998775 4667777899999998764
No 326
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=21.97 E-value=7.3e+02 Score=24.00 Aligned_cols=98 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH--HHHHHHHHHHhHHHH
Q 026674 110 RDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASL--LKRIQEAMNKTEEES 187 (235)
Q Consensus 110 ~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL--~~~Lq~a~~eaEeeS 187 (235)
...+..+..++-+....++..++.|+.++ ...+.-+...-++=.....++++....+..-.. +..|+..++..||..
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~-~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~ 292 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQY-QREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKM 292 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHH
Q 026674 188 ENLHRQLLDRELDIGAFVQKYKKL 211 (235)
Q Consensus 188 E~Lae~FL~Geidvd~FL~qF~e~ 211 (235)
+=......- |+.+.++.|...
T Consensus 293 ~Yqs~eRaR---di~E~~Es~qtR 313 (395)
T PF10267_consen 293 AYQSYERAR---DIWEVMESCQTR 313 (395)
T ss_pred HHHHHHHHh---HHHHHHHHHHHH
No 327
>PRK09039 hypothetical protein; Validated
Probab=21.84 E-value=6.6e+02 Score=23.46 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 026674 171 SLLKRIQEAMNKTEEESENLHRQL 194 (235)
Q Consensus 171 aL~~~Lq~a~~eaEeeSE~Lae~F 194 (235)
.|..+|+.++.+-..+-+.+..+|
T Consensus 176 ~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 176 DLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344455555444333334444444
No 328
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=21.60 E-value=7.1e+02 Score=23.76 Aligned_cols=46 Identities=13% Similarity=0.279 Sum_probs=28.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCC--C-------CHHHHHHHHHHHHHHHHHHH
Q 026674 174 KRIQEAMNKTEEESENLHRQLLDRE--L-------DIGAFVQKYKKLRTTYHRRA 219 (235)
Q Consensus 174 ~~Lq~a~~eaEeeSE~Lae~FL~Ge--i-------dvd~FL~qF~e~RklyH~Rr 219 (235)
..|+..+.++...-+.+++-|-+.. . .+.+|+..|++.+..-..|.
T Consensus 327 ~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~ 381 (432)
T smart00498 327 DKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKE 381 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666663321 1 36788888888877655433
No 329
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=21.41 E-value=8.5e+02 Score=24.54 Aligned_cols=19 Identities=5% Similarity=-0.033 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026674 201 IGAFVQKYKKLRTTYHRRA 219 (235)
Q Consensus 201 vd~FL~qF~e~RklyH~Rr 219 (235)
+++++..|.+.|...|+.+
T Consensus 566 ~~~~~~~~~~~~~~~~~~k 584 (595)
T PRK01433 566 FKSKIKKSMDTKLNIIIND 584 (595)
T ss_pred HHHHHHHHHHHHhhHHHHH
Confidence 4555555555555555544
No 330
>PRK05849 hypothetical protein; Provisional
Probab=21.39 E-value=9.8e+02 Score=25.29 Aligned_cols=30 Identities=20% Similarity=0.458 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHH
Q 026674 173 LKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKY 208 (235)
Q Consensus 173 ~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF 208 (235)
+.-|++-.++...+...+ |+++.++||++|
T Consensus 484 ~~s~~Tv~~~~~~D~~~l------g~l~~~~FL~~Y 513 (783)
T PRK05849 484 LNSLNTVSKELSKDLNSL------GELSKDEFLKRY 513 (783)
T ss_pred HHHhhHhHHHHHHHHHHH------hccCHHHHHHHh
Confidence 344444444444444443 666777777666
No 331
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=21.28 E-value=9e+02 Score=24.79 Aligned_cols=106 Identities=16% Similarity=0.248 Sum_probs=58.8
Q ss_pred HHHHHHHhcCHH-----HHHHHHHhcHHHHH---HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH---HHHHHHHHH
Q 026674 80 VDELRKLLADKD-----AYRQFLLSIDQVKI---QNNIRDELHRETLQIARDNLDKELRMIELRNQSK---IIRTTELAA 148 (235)
Q Consensus 80 ~~EL~eLL~d~d-----~l~~~v~~l~~vq~---l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~---~~~~~el~~ 148 (235)
...|+.|+.+++ .|+.|+..+..+-. -...+..++..-+.|+..=-..-.+|.++|..+. .....++..
T Consensus 92 l~~le~l~~~~~~gls~~L~~Ff~alq~la~~P~~~~~Rq~vl~~a~~La~~fn~~~~~L~~~~~~~n~~I~~~V~~IN~ 171 (651)
T PRK06945 92 ISQLNNYLADPTAGLSPAITSFFTGLQNVANNPSDPSARQTMLSNAQTLASQFNAAGQQLDQLRQSVNTQLTSSVTQINS 171 (651)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777776543 47777776655532 1224666666666666555555566666666541 122344555
Q ss_pred HHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHhHH
Q 026674 149 AQEKLHDLERQKEQL--LKLYSPASLLKRIQEAMNKTEE 185 (235)
Q Consensus 149 L~e~~~ek~~q~~~l--~~~~Sp~aL~~~Lq~a~~eaEe 185 (235)
+-++..++..+...+ .....|..|+++=...+.++-+
T Consensus 172 l~~qIA~LN~~I~~~~~~~g~~~ndLlDqRD~ll~eLS~ 210 (651)
T PRK06945 172 YTKQIAQLNDQIAKAESSQGQPPNDLLDQRDQLVSELSK 210 (651)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHHHHh
Confidence 666666666555443 2334566666655555444433
No 332
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.25 E-value=6e+02 Score=22.73 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 026674 147 AAAQEKLHDLERQKE 161 (235)
Q Consensus 147 ~~L~e~~~ek~~q~~ 161 (235)
..++++-.++..+++
T Consensus 85 ~~~~~rq~~~y~dld 99 (263)
T PRK10803 85 NQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334433333333333
No 333
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=21.13 E-value=5.5e+02 Score=22.25 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 026674 90 KDAYRQFLLSIDQVKIQNNIRDELHRE 116 (235)
Q Consensus 90 ~d~l~~~v~~l~~vq~l~~~~e~l~~~ 116 (235)
-+.|..|+.-+..|+.+-..+..+...
T Consensus 98 ~e~L~eY~r~i~svk~~f~~R~~a~~~ 124 (224)
T cd07623 98 AELLKDYIGLIGAIKDVFHERVKVWQN 124 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666665555533
No 334
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=21.07 E-value=8.6e+02 Score=24.50 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=10.2
Q ss_pred hhhhHHhccCCHHHHHHHhcC
Q 026674 69 AGIIALLKDKSVDELRKLLAD 89 (235)
Q Consensus 69 ~~~f~~L~~LS~~EL~eLL~d 89 (235)
..+...-...|..+.+++-.+
T Consensus 152 ~eil~~~~L~T~~~~~~~~~~ 172 (555)
T TIGR03545 152 RALLKGEDLKTVETAEEIEKS 172 (555)
T ss_pred HHHhccCCCCcHHHHHHHHHH
Confidence 333444445555555555544
No 335
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.98 E-value=3.6e+02 Score=20.03 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026674 101 DQVKIQNNIRDELHRETLQIA 121 (235)
Q Consensus 101 ~~vq~l~~~~e~l~~~N~~LA 121 (235)
+-++-++.++++|+..|-.|.
T Consensus 18 dTI~LLQmEieELKEknn~l~ 38 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhH
Confidence 334555556666666666554
No 336
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.97 E-value=3.5e+02 Score=19.86 Aligned_cols=40 Identities=15% Similarity=0.003 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 185 EESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLS 224 (235)
Q Consensus 185 eeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~a 224 (235)
.+-+.|+.++-+|+++|++-++.|.+.-+++..-+-+-..
T Consensus 13 ~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~c~~~L~~ 52 (75)
T PRK14064 13 AELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQS 52 (75)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788887789999999999999998887765555333
No 337
>PF15063 TC1: Thyroid cancer protein 1
Probab=20.91 E-value=78 Score=23.76 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=8.7
Q ss_pred hHhhhhHHhccCCH
Q 026674 67 EAAGIIALLKDKSV 80 (235)
Q Consensus 67 ~~~~~f~~L~~LS~ 80 (235)
..+.||.+++..+.
T Consensus 29 asaNIFe~vn~~ql 42 (79)
T PF15063_consen 29 ASANIFENVNLDQL 42 (79)
T ss_pred hhhhhhhccCHHHH
Confidence 35788877764433
No 338
>PHA02682 ORF080 virion core protein; Provisional
Probab=20.86 E-value=6e+02 Score=22.64 Aligned_cols=63 Identities=8% Similarity=0.130 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026674 106 QNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQ 177 (235)
Q Consensus 106 l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq 177 (235)
+++++.++..++++|.-+.+.+-..|+..|+.. +.-++.|+.|... .-++.+-.+.+|..|..
T Consensus 213 ikkeladiadsvrdl~aeS~~LtrDIE~AKstT-q~AIdDLRrLl~~--------~~v~~~~tps~l~drvd 275 (280)
T PHA02682 213 IKKELADIADSVRDLNAESLSLTRDIENAKSTT-QAAIDDLRRLLTG--------GGVARRDTPSALRDRVD 275 (280)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhH-HHHHHHHHHHHhc--------CCccccCChHHHHHhhh
Confidence 344556666666666665566666677777655 3334444444321 12455567777777654
No 339
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=20.76 E-value=1.1e+03 Score=25.69 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=4.8
Q ss_pred HHHHHHhHHHHHH
Q 026674 177 QEAMNKTEEESEN 189 (235)
Q Consensus 177 q~a~~eaEeeSE~ 189 (235)
...+..+++.-+.
T Consensus 445 ~~~~~~l~~~~~~ 457 (1163)
T COG1196 445 NEELEELEEQLEE 457 (1163)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 340
>PF13514 AAA_27: AAA domain
Probab=20.70 E-value=1.1e+03 Score=25.56 Aligned_cols=130 Identities=25% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHhc-----CHHHHHHHHHhcHHHHHHHHHHHHHHHHH--------HHHHHHhh------hhhHHHHHHHHHhHHH
Q 026674 81 DELRKLLA-----DKDAYRQFLLSIDQVKIQNNIRDELHRET--------LQIARDNL------DKELRMIELRNQSKII 141 (235)
Q Consensus 81 ~EL~eLL~-----d~d~l~~~v~~l~~vq~l~~~~e~l~~~N--------~~LAe~NL------~~e~~L~elR~ql~~~ 141 (235)
.++..|+. |.+.|...+.....+..+...+..+...+ ..-....+ ....++.++..++ ..
T Consensus 829 ~~l~~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~~l~~~l~~l~~~l-~~ 907 (1111)
T PF13514_consen 829 AELAELLEQAGVEDEEELREAEERAEERRELREELEDLERQLERQADGLDLEELEEELEELDPDELEAELEELEEEL-EE 907 (1111)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHHHHHHHHHHHHHHH-HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 026674 142 RTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLR 212 (235)
Q Consensus 142 ~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~R 212 (235)
.-.++..+..+...+..++..+...-.-..+...+.....+..+..+..+.--+... -+..=++.|++.+
T Consensus 908 l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~~~~~~~~~la~~-lL~~a~~~~r~~~ 977 (1111)
T PF13514_consen 908 LEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEELAEEWAALRLAAE-LLEEAIERYREER 977 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
No 341
>KOG3331 consensus Mitochondrial/chloroplast ribosomal protein L4/L29 [Translation, ribosomal structure and biogenesis]
Probab=20.64 E-value=4.9e+02 Score=22.96 Aligned_cols=22 Identities=32% Similarity=0.229 Sum_probs=19.1
Q ss_pred hhHhhhhHHhccCCHHHHHHHh
Q 026674 66 AEAAGIIALLKDKSVDELRKLL 87 (235)
Q Consensus 66 ~~~~~~f~~L~~LS~~EL~eLL 87 (235)
.+-+|..++|..+|.++|+.|-
T Consensus 62 ~GR~W~aeELR~KS~nDLH~LW 83 (213)
T KOG3331|consen 62 HGRAWSAEELRLKSFNDLHKLW 83 (213)
T ss_pred cCCccchHHHhcchhhHHHHHH
Confidence 3478999999999999999874
No 342
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.22 E-value=3.7e+02 Score=19.88 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 026674 185 EESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRAL 220 (235)
Q Consensus 185 eeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~ 220 (235)
++-+.|+.+.-+|+++|++-++.|.+.-+++-.-+-
T Consensus 17 ~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~~ 52 (80)
T PRK00977 17 AELEEIVTRLESGDLPLEESLAAFERGVALARQCQK 52 (80)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344567777778999999999999998887654333
No 343
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=20.19 E-value=8.3e+02 Score=23.98 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=18.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhH
Q 026674 159 QKEQLLKLYSPASLLKRIQEAMNKTE 184 (235)
Q Consensus 159 q~~~l~~~~Sp~aL~~~Lq~a~~eaE 184 (235)
-+..+...|||++|..|+..-..-.+
T Consensus 355 Alr~lL~~FsPq~L~~Rf~~~sr~~~ 380 (430)
T COG3456 355 ALRALLDRFSPQALLRRFDHYSRSSE 380 (430)
T ss_pred HHHHHHHccCHHHHHHhccccccccc
Confidence 34467889999999999876554433
No 344
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=20.14 E-value=6.8e+02 Score=22.92 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026674 147 AAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAK 226 (235)
Q Consensus 147 ~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~a~~ 226 (235)
.-|..+..-...+...+...+.-+.+-..|+.++..+..+.+.+-....+=.-| ..=|+.=+++|+.--.|..||+...
T Consensus 138 dlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~d-e~~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 138 DLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASD-EANLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555566777889999999999999999999999988887775321212 2235555677777778999999988
Q ss_pred hcc
Q 026674 227 THS 229 (235)
Q Consensus 227 ~~~ 229 (235)
+++
T Consensus 217 q~v 219 (267)
T PF10234_consen 217 QSV 219 (267)
T ss_pred Hhc
Confidence 877
No 345
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=20.11 E-value=2.1e+02 Score=22.15 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 026674 184 EEESENLHRQLLDRELDIGAFVQKYKK 210 (235)
Q Consensus 184 EeeSE~Lae~FL~Geidvd~FL~qF~e 210 (235)
.+--..|+..+++|+|++++|-.+-.+
T Consensus 25 ~~~Vr~LV~~L~~~~i~~EeF~~~Lq~ 51 (92)
T smart00549 25 AERVRTLVLGLVNGTITAEEFTSRLQE 51 (92)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344567788889999999999776554
No 346
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=20.10 E-value=4.1e+02 Score=24.12 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=12.1
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 026674 94 RQFLLSIDQVKIQNNIRDELHRETLQI 120 (235)
Q Consensus 94 ~~~v~~l~~vq~l~~~~e~l~~~N~~L 120 (235)
..+...+-.+.++.++-+.|+.++.+|
T Consensus 59 ~~~~~~~~~~~~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 59 DGISENLKDVNNLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333434444444444455444444
Done!