Query 026674
Match_columns 235
No_of_seqs 123 out of 274
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 19:19:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p22_C Protein SRN2; endosome, 100.0 1.4E-32 4.7E-37 234.9 14.7 147 73-224 33-183 (192)
2 2jee_A YIIU; FTSZ, septum, coi 90.1 4.2 0.00015 29.6 11.1 65 90-165 12-76 (81)
3 3ghg_A Fibrinogen alpha chain; 86.9 4 0.00014 39.3 10.3 19 193-211 167-185 (562)
4 3na7_A HP0958; flagellar bioge 85.4 16 0.00056 31.1 15.7 42 172-214 144-187 (256)
5 2v71_A Nuclear distribution pr 84.0 18 0.0006 30.3 14.2 54 85-138 25-79 (189)
6 2wt7_B Transcription factor MA 83.4 5 0.00017 29.8 7.4 15 74-88 2-16 (90)
7 2w83_C C-JUN-amino-terminal ki 81.2 13 0.00044 26.8 9.1 72 103-188 4-75 (77)
8 1deq_A Fibrinogen (alpha chain 80.9 27 0.00091 32.3 12.7 13 196-208 173-185 (390)
9 2dfs_A Myosin-5A; myosin-V, in 79.4 52 0.0018 34.1 15.9 43 115-158 977-1019(1080)
10 2jee_A YIIU; FTSZ, septum, coi 76.5 19 0.00066 26.1 10.4 54 103-164 15-68 (81)
11 2dfs_A Myosin-5A; myosin-V, in 76.4 48 0.0016 34.4 14.6 13 146-158 993-1005(1080)
12 3rm1_A Protein S100-B; alpha-h 75.9 4.7 0.00016 28.4 5.1 53 166-218 27-88 (92)
13 3dm5_A SRP54, signal recogniti 75.0 4.8 0.00017 37.7 6.2 27 187-214 317-343 (443)
14 1ez3_A Syntaxin-1A; three heli 73.5 26 0.00088 26.1 9.7 32 91-122 5-36 (127)
15 3ghg_A Fibrinogen alpha chain; 72.9 13 0.00043 35.9 8.5 35 126-161 114-148 (562)
16 4eto_A Protein S100-A4; calciu 72.6 18 0.00063 25.7 7.7 53 166-218 28-89 (93)
17 3trt_A Vimentin; cytoskeleton, 72.2 22 0.00074 24.7 7.9 51 110-161 11-66 (77)
18 1a4p_A S100A10; S100 family, E 72.1 20 0.00069 25.4 7.8 52 166-217 24-84 (96)
19 3a7p_A Autophagy protein 16; c 71.8 33 0.0011 27.7 9.6 12 183-194 122-133 (152)
20 1x79_B RAB GTPase binding effe 71.2 33 0.0011 26.3 10.4 87 100-190 5-93 (112)
21 1xk4_C Calgranulin B; S100 fam 68.9 31 0.0011 25.1 8.7 51 166-216 30-90 (113)
22 1s94_A S-syntaxin; three helix 65.9 49 0.0017 26.4 10.6 50 89-138 34-83 (180)
23 3kl4_A SRP54, signal recogniti 65.3 5.6 0.00019 37.1 4.3 50 165-214 281-343 (433)
24 1m1j_B Fibrinogen beta chain; 65.0 94 0.0032 29.3 14.9 21 32-54 30-50 (464)
25 3m91_A Proteasome-associated A 64.3 28 0.00096 23.0 6.7 29 110-138 11-39 (51)
26 1v74_B Colicin D immunity prot 64.1 7.3 0.00025 28.7 3.9 25 189-213 8-32 (87)
27 3m91_A Proteasome-associated A 59.2 31 0.0011 22.8 5.9 36 103-138 11-46 (51)
28 1qls_A S100C protein, calgizza 58.2 29 0.00099 23.8 6.2 52 167-218 32-92 (99)
29 1wlq_A Geminin; coiled-coil; 2 58.0 50 0.0017 24.0 7.4 32 107-138 30-61 (83)
30 2p22_A Suppressor protein STP2 57.8 78 0.0027 26.0 14.2 45 178-222 122-167 (174)
31 3zwh_A Protein S100-A4; Ca-bin 57.2 45 0.0015 24.3 7.3 53 166-218 31-92 (104)
32 2yy0_A C-MYC-binding protein; 56.7 21 0.0007 23.7 4.8 30 109-138 20-49 (53)
33 1j55_A S-100P protein; metal b 56.4 48 0.0016 23.2 7.2 55 166-220 27-90 (95)
34 2wvr_A Geminin; DNA replicatio 56.3 58 0.002 27.5 8.5 53 107-164 107-159 (209)
35 1k2h_A S100A1, S-100 protein, 56.2 25 0.00087 23.7 5.6 51 166-216 27-86 (93)
36 3tnu_B Keratin, type II cytosk 56.0 65 0.0022 24.5 9.0 37 174-210 85-124 (129)
37 2y5i_A S100Z, S100 calcium bin 55.9 39 0.0013 24.1 6.7 56 166-221 28-92 (99)
38 4ayb_Q DNA-directed RNA polyme 55.9 16 0.00055 27.2 4.4 41 189-229 49-89 (104)
39 3iox_A AGI/II, PA; alpha helix 55.6 1.4E+02 0.0049 28.3 14.0 17 92-108 10-26 (497)
40 4h22_A Leucine-rich repeat fli 54.7 46 0.0016 25.1 7.0 31 130-161 31-61 (103)
41 3n22_A Protein S100-A2; EF-han 54.0 57 0.002 23.3 9.5 53 166-218 29-90 (98)
42 3nso_A Protein S100-A3; EF-han 53.6 32 0.0011 25.1 6.0 52 166-217 28-88 (101)
43 2jo8_A Serine/threonine-protei 52.5 47 0.0016 22.0 5.9 18 70-87 2-19 (51)
44 1k8u_A S100A6, calcyclin, CACY 50.2 45 0.0015 22.1 6.0 51 167-217 29-86 (90)
45 1xk4_A Calgranulin A; S100 fam 50.0 58 0.002 22.2 7.4 51 167-217 29-84 (93)
46 1m1j_A Fibrinogen alpha subuni 47.5 1.2E+02 0.004 28.8 9.9 32 175-206 150-181 (491)
47 3a7p_A Autophagy protein 16; c 47.5 1.1E+02 0.0037 24.6 12.5 42 144-186 103-144 (152)
48 1psr_A Psoriasin, S100A7; EF-h 47.3 26 0.00091 25.0 4.6 51 166-216 25-86 (100)
49 1uii_A Geminin; human, DNA rep 46.1 83 0.0028 22.8 7.2 32 107-138 38-69 (83)
50 1gd2_E Transcription factor PA 45.1 30 0.001 24.2 4.3 37 102-138 30-66 (70)
51 1deq_A Fibrinogen (alpha chain 44.9 1.9E+02 0.0065 26.6 11.4 38 123-161 114-151 (390)
52 2wcb_A Protein S100-A12; calci 44.0 30 0.001 24.3 4.4 51 167-217 31-90 (95)
53 1s94_A S-syntaxin; three helix 43.8 1.2E+02 0.0041 24.0 9.5 15 108-122 81-95 (180)
54 1t2k_D Cyclic-AMP-dependent tr 42.5 64 0.0022 21.4 5.6 29 110-138 24-52 (61)
55 1ses_A Seryl-tRNA synthetase; 42.3 2E+02 0.0069 26.3 10.8 50 145-194 36-94 (421)
56 3vkg_A Dynein heavy chain, cyt 41.8 3E+02 0.01 32.2 13.7 113 83-197 1961-2081(3245)
57 2lnk_A Protein S100-A4; EF-han 41.7 53 0.0018 24.4 5.6 52 166-217 40-100 (113)
58 3iqt_A Signal transduction his 40.2 1.1E+02 0.0038 23.0 7.3 43 70-114 7-50 (123)
59 1cf4_B Protein (activated P21C 40.2 9.9 0.00034 24.5 1.0 10 20-29 27-36 (44)
60 2q12_A DIP13 alpha, DCC-intera 40.1 1.6E+02 0.0055 24.5 10.7 77 145-221 125-201 (265)
61 2wt7_B Transcription factor MA 40.0 1.1E+02 0.0037 22.5 8.3 19 71-89 11-29 (90)
62 3t98_B Nucleoporin NUP58/NUP45 38.1 1.2E+02 0.004 22.3 10.1 48 165-216 42-89 (93)
63 2xxa_A Signal recognition part 37.8 64 0.0022 29.6 6.6 29 184-212 313-342 (433)
64 3ljc_A ATP-dependent protease 37.5 1.8E+02 0.0061 24.2 9.1 12 88-99 167-178 (252)
65 2kax_A Protein S100-A5; EF-han 37.5 14 0.00047 25.9 1.6 51 166-216 28-84 (92)
66 2wuj_A Septum site-determining 37.3 52 0.0018 21.8 4.4 11 89-99 21-31 (57)
67 1ci6_A Transcription factor AT 37.2 93 0.0032 20.9 5.9 30 109-138 24-53 (63)
68 1wle_A Seryl-tRNA synthetase; 36.7 2.5E+02 0.0085 26.4 10.6 11 83-93 43-53 (501)
69 3d2f_A Heat shock protein homo 36.7 1E+02 0.0035 29.9 8.1 26 171-196 601-626 (675)
70 2dq0_A Seryl-tRNA synthetase; 36.6 1.3E+02 0.0045 27.9 8.6 20 175-194 80-99 (455)
71 4eah_A Formin-like protein 3, 35.7 1.6E+02 0.0056 26.6 9.0 55 174-228 330-393 (402)
72 3shg_B VBHA; ampylation, adeny 35.7 21 0.00073 24.5 2.2 27 184-210 29-55 (61)
73 3he5_A Synzip1; heterodimeric 35.3 86 0.0029 19.9 6.3 32 103-134 5-36 (49)
74 2pjw_H Uncharacterized protein 34.9 1.3E+02 0.0044 21.9 11.0 49 116-165 36-84 (88)
75 1eq1_A Apolp-III, apolipophori 34.7 97 0.0033 24.7 6.2 47 171-217 103-161 (166)
76 2pih_A Protein YMCA; regulate 34.6 1.6E+02 0.0056 22.9 11.4 26 89-114 12-37 (151)
77 4h8s_A DCC-interacting protein 34.5 2.4E+02 0.0084 24.9 12.0 54 172-225 108-166 (407)
78 1i2t_A HYD protein; four alpha 34.3 61 0.0021 22.0 4.4 32 69-100 22-53 (61)
79 1ses_A Seryl-tRNA synthetase; 34.0 2.7E+02 0.0093 25.3 10.6 33 130-163 65-97 (421)
80 3a5t_A Transcription factor MA 34.0 2.9 0.0001 32.0 -2.6 16 73-88 11-26 (107)
81 3nxa_A Protein S100-A16; S100 33.1 41 0.0014 24.2 3.6 52 166-217 30-90 (100)
82 2q13_A DCC-interacting protein 32.8 1.9E+02 0.0063 25.5 8.7 23 144-166 124-146 (385)
83 3oja_A Leucine-rich immune mol 32.7 2.8E+02 0.0095 25.0 11.1 10 173-182 469-478 (487)
84 2jqe_A SRP54, signal recogniti 32.6 5.5 0.00019 30.9 -1.3 23 191-213 2-24 (119)
85 2dq3_A Seryl-tRNA synthetase; 32.3 2E+02 0.0067 26.3 9.0 21 174-194 78-98 (425)
86 2cly_A ATP synthase B chain, m 31.7 2.3E+02 0.0079 23.8 8.7 24 115-138 122-145 (214)
87 1vp7_A Exodeoxyribonuclease VI 31.5 1.6E+02 0.0055 21.9 7.2 36 186-221 38-73 (100)
88 2pjw_H Uncharacterized protein 31.4 1.3E+02 0.0044 21.9 6.1 38 101-138 35-72 (88)
89 3ohw_B Phycobilisome LCM core- 31.3 76 0.0026 25.4 5.2 24 186-209 49-72 (148)
90 3lay_A Zinc resistance-associa 31.2 2.1E+02 0.0072 23.2 10.3 31 146-176 87-119 (175)
91 3iox_A AGI/II, PA; alpha helix 30.9 3.5E+02 0.012 25.7 11.0 35 150-186 61-95 (497)
92 1nkp_A C-MYC, MYC proto-oncoge 30.6 83 0.0029 22.6 4.9 33 102-134 53-85 (88)
93 3a2a_A Voltage-gated hydrogen 30.2 1.3E+02 0.0043 20.3 5.5 8 131-138 27-34 (58)
94 3nmd_A CGMP dependent protein 29.9 1.5E+02 0.005 20.9 7.2 12 127-138 38-49 (72)
95 1jnm_A Proto-oncogene C-JUN; B 29.8 58 0.002 21.7 3.7 23 115-137 29-51 (62)
96 4h8s_A DCC-interacting protein 29.6 3E+02 0.01 24.4 10.2 25 143-167 146-170 (407)
97 2lw1_A ABC transporter ATP-bin 28.4 1.6E+02 0.0054 20.8 6.5 25 171-195 56-80 (89)
98 2zxx_A Geminin; coiled-coil, c 28.3 1.6E+02 0.0056 21.0 6.8 32 107-138 26-57 (79)
99 3iz5_c 60S ribosomal protein L 28.2 2E+02 0.0069 22.2 7.0 18 72-89 8-25 (124)
100 3qne_A Seryl-tRNA synthetase, 28.1 2.3E+02 0.0077 26.7 8.7 17 145-161 86-102 (485)
101 2v71_A Nuclear distribution pr 28.1 2.5E+02 0.0087 23.1 14.0 23 171-193 102-124 (189)
102 3o0z_A RHO-associated protein 27.9 2.4E+02 0.0084 22.9 14.2 46 146-191 92-138 (168)
103 1ux5_A BNI1 protein; structura 27.6 3.3E+02 0.011 24.3 10.6 27 200-226 383-409 (411)
104 2dq0_A Seryl-tRNA synthetase; 27.6 2.6E+02 0.0091 25.8 9.0 17 145-161 84-100 (455)
105 2pih_A Protein YMCA; regulate 27.5 2.2E+02 0.0075 22.2 9.8 21 80-100 13-33 (151)
106 1wle_A Seryl-tRNA synthetase; 27.3 3.9E+02 0.013 25.1 11.8 18 144-161 130-147 (501)
107 3q0x_A Centriole protein; cent 27.3 2.9E+02 0.0098 23.5 9.0 49 88-138 160-208 (228)
108 3cvf_A Homer-3, homer protein 26.9 1.7E+02 0.0059 20.8 6.1 22 117-138 15-36 (79)
109 2p0t_A UPF0307 protein pspto_4 26.9 60 0.002 26.7 4.0 49 161-209 76-131 (176)
110 1nkp_B MAX protein, MYC proto- 26.7 95 0.0033 21.6 4.6 20 103-122 49-68 (83)
111 1gs9_A Apolipoprotein E, APOE4 26.5 2.2E+02 0.0076 22.6 7.3 19 71-89 36-54 (165)
112 3tnu_A Keratin, type I cytoske 26.3 2.1E+02 0.0073 21.6 9.9 37 174-210 87-126 (131)
113 4fla_A Regulation of nuclear P 26.2 2.4E+02 0.0083 22.3 12.7 23 113-135 77-99 (152)
114 1ifw_A Polyadenylate-binding p 26.0 86 0.0029 23.1 4.3 28 73-100 47-74 (92)
115 3mov_A Lamin-B1; LMNB1, B-type 26.0 1.9E+02 0.0066 21.0 6.6 9 200-208 76-84 (95)
116 3rkg_A Magnesium transporter M 25.9 1.1E+02 0.0036 26.6 5.6 49 77-128 160-208 (261)
117 2wuj_A Septum site-determining 25.9 91 0.0031 20.6 4.1 23 111-133 30-52 (57)
118 1wzd_A Heme oxygenase; electro 25.8 74 0.0025 26.1 4.4 49 170-221 6-56 (215)
119 2dgc_A Protein (GCN4); basic d 25.7 1E+02 0.0035 20.8 4.4 6 130-135 52-57 (63)
120 1nlw_A MAD protein, MAX dimeri 25.5 95 0.0033 21.9 4.4 25 102-126 48-72 (80)
121 4b9q_A Chaperone protein DNAK; 25.5 4.3E+02 0.015 24.9 11.9 17 76-92 505-521 (605)
122 3i00_A HIP-I, huntingtin-inter 25.4 2.3E+02 0.0077 21.6 8.5 18 177-194 91-108 (120)
123 3kuj_A Polyadenylate-binding p 25.3 87 0.003 22.9 4.2 32 69-100 41-72 (88)
124 2hy6_A General control protein 25.0 1.2E+02 0.0041 18.3 4.1 24 113-136 6-29 (34)
125 2ky4_A Phycobilisome linker po 24.9 49 0.0017 26.6 3.0 26 185-210 39-64 (149)
126 2h7b_A Core-binding factor, ML 24.5 1.3E+02 0.0045 22.7 5.1 28 183-210 27-54 (105)
127 1t2k_D Cyclic-AMP-dependent tr 24.5 1.4E+02 0.0049 19.6 4.9 27 109-135 30-56 (61)
128 3vem_A Helicase protein MOM1; 24.3 2.4E+02 0.0082 21.6 7.9 8 81-88 39-46 (115)
129 4etp_A Kinesin-like protein KA 24.2 2.4E+02 0.0082 25.6 7.9 9 189-197 131-139 (403)
130 3nph_B Phycobilisome 32.1 kDa 24.1 49 0.0017 26.5 2.9 24 187-210 38-61 (148)
131 3u06_A Protein claret segregat 24.1 2.6E+02 0.0088 25.5 8.2 9 189-197 129-137 (412)
132 2f6m_A Suppressor protein STP2 24.1 1.8E+02 0.0061 20.0 8.0 38 183-220 18-56 (65)
133 1wlx_A Alpha-actinin 4; three- 22.9 1.5E+02 0.0052 23.0 5.4 13 78-90 42-54 (129)
134 3t49_A SCIN-B, fibrinogen-bind 22.9 2E+02 0.0068 20.1 7.8 27 79-105 5-31 (73)
135 1t6f_A Geminin; coiled-coil, c 22.8 1E+02 0.0036 18.9 3.5 23 114-136 6-28 (37)
136 3umh_A Amyloid beta A4 protein 22.1 3.5E+02 0.012 22.7 8.0 47 147-194 39-85 (211)
137 1m3w_A H10H24; four-helix bund 21.9 90 0.0031 18.2 2.9 19 202-221 11-29 (32)
138 2d4y_A HAP1, flagellar HOOK-as 21.8 4.5E+02 0.015 23.8 12.0 104 80-183 28-145 (463)
139 3l9k_W Dynein intermediate cha 21.7 1.1E+02 0.0038 18.9 3.5 24 78-102 1-24 (38)
140 3e98_A GAF domain of unknown f 21.6 3.6E+02 0.012 22.7 9.1 20 162-181 111-130 (252)
141 3nzt_A Glutamate--cysteine lig 21.6 5.3E+02 0.018 24.5 12.4 44 163-210 476-519 (525)
142 3m48_A General control protein 21.4 1.4E+02 0.0049 17.9 3.8 22 115-136 7-28 (33)
143 3osj_A Phycobilisome LCM core- 21.3 74 0.0025 25.5 3.4 23 188-210 50-72 (147)
144 4a17_U RPL35, 60S ribosomal pr 21.3 2.8E+02 0.0097 21.3 6.7 17 73-89 8-24 (124)
145 2vwa_A Putative uncharacterize 20.9 79 0.0027 23.4 3.2 31 75-105 39-69 (101)
146 1k9u_A Polcalcin PHL P 7; poll 20.9 1.5E+02 0.0051 18.8 4.5 47 168-214 21-70 (78)
147 3etw_A Adhesin A; antiparallel 20.8 2.9E+02 0.0098 21.2 14.5 30 115-148 33-62 (119)
148 2h2k_A Protein S100-A13; calci 20.8 1.7E+02 0.0058 21.1 5.1 50 166-215 40-95 (106)
149 3bjd_A Putative 3-oxoacyl-(acy 20.4 98 0.0033 27.3 4.4 62 166-228 104-165 (332)
150 2wt7_A Proto-oncogene protein 20.1 2E+02 0.0068 19.1 5.9 29 110-138 25-53 (63)
No 1
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=100.00 E-value=1.4e-32 Score=234.89 Aligned_cols=147 Identities=15% Similarity=0.166 Sum_probs=140.0
Q ss_pred HHhccCCHHHHHHHhcCH-HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 026674 73 ALLKDKSVDELRKLLADK-DAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQE 151 (235)
Q Consensus 73 ~~L~~LS~~EL~eLL~d~-d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e 151 (235)
..|++||++||++||+|+ ++|++||..+|+|+.++..++++ +++|+.|++++++|+++|.++ ...+.+++.|+.
T Consensus 33 ~~L~~LS~~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l----~s~ae~ll~l~~~Le~~r~~l-~~~l~~~~~L~~ 107 (192)
T 2p22_C 33 EGINLLSSKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAF----RDQFKQLEENFEDLHEQKDKV-QALLENARILES 107 (192)
T ss_dssp SGGGSCTTHHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHH
Confidence 479999999999999998 99999999999999999999998 788888899999999999999 579999999999
Q ss_pred HHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 152 KLHDLERQKE-QLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDR--ELDIGAFVQKYKKLRTTYHRRALVHLS 224 (235)
Q Consensus 152 ~~~ek~~q~~-~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~G--eidvd~FL~qF~e~RklyH~Rr~K~~a 224 (235)
+|..++++++ .++.+|||++|+++|++++.++|++|++|+++|++| +++|++||++|++.|++||+||+|...
T Consensus 108 ~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~y~~~R~~yH~RreK~~r 183 (192)
T 2p22_C 108 KYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDIRTQYHLRREKLAT 183 (192)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999995 899999999999999999999999999999999998 899999999999999999999999654
No 2
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=90.09 E-value=4.2 Score=29.63 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026674 90 KDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLK 165 (235)
Q Consensus 90 ~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~ 165 (235)
+.+++..| +-|.-++.++++|+.+|..|+..|-+....-+.++.+. ..|+++......++..+..
T Consensus 12 E~KIq~av---dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en--------~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 12 EAKVQQAI---DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELEREN--------NHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 33444444 44666777888888888888876665554444444433 4455544444444444443
No 3
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=86.93 E-value=4 Score=39.27 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=12.0
Q ss_pred HHhcCCCCHHHHHHHHHHH
Q 026674 193 QLLDRELDIGAFVQKYKKL 211 (235)
Q Consensus 193 ~FL~Geidvd~FL~qF~e~ 211 (235)
+.++-++|++++...=+.+
T Consensus 167 r~~~~~vd~~sY~~~QKQL 185 (562)
T 3ghg_A 167 RALAREVDLKDYEDQQKQL 185 (562)
T ss_dssp CCCCCCCCHHHHHHHHHHH
T ss_pred chheeecchHHHHHHHHHH
Confidence 4455578887777665544
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=85.39 E-value=16 Score=31.09 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHH
Q 026674 172 LLKRIQEAMNKTEEESENLHRQ--LLDRELDIGAFVQKYKKLRTT 214 (235)
Q Consensus 172 L~~~Lq~a~~eaEeeSE~Lae~--FL~Geidvd~FL~qF~e~Rkl 214 (235)
+.+.+...+.+.+.+-+.+..+ -+.+.|+ .+.|..|...|+-
T Consensus 144 ~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~-~~lL~~Yerir~~ 187 (256)
T 3na7_A 144 LESLVENEVKNIKETQQIIFKKKEDLVEKTE-PKIYSFYERIRRW 187 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Confidence 3444444455444444444222 1334566 6788888888864
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=84.00 E-value=18 Score=30.27 Aligned_cols=54 Identities=9% Similarity=0.105 Sum_probs=37.5
Q ss_pred HHhcCHHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 85 KLLADKDAYRQFLLSIDQV-KIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 85 eLL~d~d~l~~~v~~l~~v-q~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
.+..=...|+.|..+.-++ ..+...++.+-..|..|-..|..+..+++..|..+
T Consensus 25 ~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 25 SFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466777887766555 45556777777788888877777777777777765
No 6
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=83.43 E-value=5 Score=29.78 Aligned_cols=15 Identities=40% Similarity=0.383 Sum_probs=11.1
Q ss_pred HhccCCHHHHHHHhc
Q 026674 74 LLKDKSVDELRKLLA 88 (235)
Q Consensus 74 ~L~~LS~~EL~eLL~ 88 (235)
.|-++|+.||..+|.
T Consensus 2 eLv~msVreLN~~L~ 16 (90)
T 2wt7_B 2 QLVSMSVRELNRHLR 16 (90)
T ss_dssp HHHHSCHHHHHTTCT
T ss_pred ccccCCHHHHHHHHc
Confidence 455788888888873
No 7
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=81.16 E-value=13 Score=26.75 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 026674 103 VKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNK 182 (235)
Q Consensus 103 vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~e 182 (235)
+..+-.+++.|+.+|.+|- +-...|+-.|+.+ |.++++|..-++ .+..+.. +-...+.+|+..+.+
T Consensus 4 ~~gmgkevEnLi~EN~eLl----~TKNaLnvvk~DL-I~rvdELt~E~e---~l~~El~------s~~~~~~r~~~ri~e 69 (77)
T 2w83_C 4 PEFMGREVENLILENTQLL----ETKNALNIVKNDL-IAKVDELTCEKD---VLQGELE------AVKQAKLKLEEKNRE 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-HHHHHHHHHHHH---HHHHHHH------HHHHHHHHHHHHC--
T ss_pred hhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHH-HHHHHHHHhHHH---HHHHHHH------HHHHHHHHHHHHHHH
Confidence 3456678888888888886 4667777788877 666666543322 2222222 334556777777777
Q ss_pred hHHHHH
Q 026674 183 TEEESE 188 (235)
Q Consensus 183 aEeeSE 188 (235)
.|+|+.
T Consensus 70 lEeElk 75 (77)
T 2w83_C 70 LEEELR 75 (77)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 777654
No 8
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=80.91 E-value=27 Score=32.26 Aligned_cols=13 Identities=8% Similarity=0.427 Sum_probs=5.9
Q ss_pred cCCCCHHHHHHHH
Q 026674 196 DRELDIGAFVQKY 208 (235)
Q Consensus 196 ~Geidvd~FL~qF 208 (235)
+=+||+++..++=
T Consensus 173 ~~~vD~e~ye~qq 185 (390)
T 1deq_A 173 EHKVDLEDYKNQQ 185 (390)
T ss_pred hhhccHHHHHHHH
Confidence 3345555444443
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=79.38 E-value=52 Score=34.08 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026674 115 RETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLER 158 (235)
Q Consensus 115 ~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~ 158 (235)
.++..+...-..++.++++++.++ .....+.+.+++++.++..
T Consensus 977 ~e~~~~~~~v~~L~~e~~~l~~~~-~~~~ke~~~lee~~~~~~~ 1019 (1080)
T 2dfs_A 977 EEAKNATNRVLSLQEEIAKLRKEL-HQTQTEKKTIEEWADKYKH 1019 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 333333333444555556666555 2334455555555544443
No 10
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.54 E-value=19 Score=26.11 Aligned_cols=54 Identities=13% Similarity=0.101 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 103 VKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLL 164 (235)
Q Consensus 103 vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~ 164 (235)
|+..-..+.-|.-++++|-+.|-....+.+++++.. ..|..+...+..++..+.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~--------~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQR--------EELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHH
Confidence 444444455555567777766666666666655533 345666666666555443
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=76.36 E-value=48 Score=34.36 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 026674 146 LAAAQEKLHDLER 158 (235)
Q Consensus 146 l~~L~e~~~ek~~ 158 (235)
+..+.+++.++.+
T Consensus 993 ~~~l~~~~~~~~k 1005 (1080)
T 2dfs_A 993 IAKLRKELHQTQT 1005 (1080)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 12
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=75.88 E-value=4.7 Score=28.42 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHH------HHHhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHH
Q 026674 166 LYSPASLLKRIQEA------MNKTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYHRR 218 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a------~~eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH~R 218 (235)
.-+.+-|...|+.. ..-.+++.+.+.+.+ -+|.|++++|+.-+......||..
T Consensus 27 ~Is~~EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~l~~~~~~~ 88 (92)
T 3rm1_A 27 KLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAMITTACHEF 88 (92)
T ss_dssp SBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHHHGGGG
T ss_pred eECHHHHHHHHHHHhhhhccCcccHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 34455555555441 112456667776665 368999999999999888888854
No 13
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=75.04 E-value=4.8 Score=37.67 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 026674 187 SENLHRQLLDRELDIGAFVQKYKKLRTT 214 (235)
Q Consensus 187 SE~Lae~FL~Geidvd~FL~qF~e~Rkl 214 (235)
.+ +++++..|+.+++||++|+...++.
T Consensus 317 ~~-~~~k~~~~~f~l~d~~~q~~~~~km 343 (443)
T 3dm5_A 317 EE-DIERFLRGKFTLKDMYAQLEAMRKM 343 (443)
T ss_dssp HH-HHHHHHTTCCCHHHHHHHHHHHHTT
T ss_pred HH-HHHHHhhCCcCHHHHHHHHHHHHhc
Confidence 44 9999999999999999999998863
No 14
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=73.48 E-value=26 Score=26.13 Aligned_cols=32 Identities=9% Similarity=0.051 Sum_probs=15.2
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 026674 91 DAYRQFLLSIDQVKIQNNIRDELHRETLQIAR 122 (235)
Q Consensus 91 d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe 122 (235)
..++.|+.....|+.....+......+..+=+
T Consensus 5 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~ 36 (127)
T 1ez3_A 5 RFMDEFFEQVEEIRGFIDKIAENVEEVKRKHS 36 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666655554444444444443333333
No 15
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=72.89 E-value=13 Score=35.86 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 126 DKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKE 161 (235)
Q Consensus 126 ~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~ 161 (235)
+++.++..||..| +..+..++.|+..++++..+++
T Consensus 114 ELRRrIqyLKekV-dnQlsnIrvLQsnLedq~~kIQ 148 (562)
T 3ghg_A 114 DLRSRIEVLKRKV-IEKVQHIQLLQKNVRAQLVDMK 148 (562)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666 3445556666665555544333
No 16
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=72.63 E-value=18 Score=25.68 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHHHH------HhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHH
Q 026674 166 LYSPASLLKRIQEAMN------KTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYHRR 218 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a~~------eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH~R 218 (235)
.-+.+-|...|+.... ..+++.+++-+.+ -+|.|++++|+.-....-..||.-
T Consensus 28 ~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~~~~~~~~~ 89 (93)
T 4eto_A 28 KLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEF 89 (93)
T ss_dssp SBCHHHHHHHHHHHCGGGC---CCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHHHHHHH
T ss_pred eECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4567777777765221 2467777777776 368899999999988888888853
No 17
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=72.23 E-value=22 Score=24.69 Aligned_cols=51 Identities=16% Similarity=0.276 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhhh-----hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 110 RDELHRETLQIARDNLD-----KELRMIELRNQSKIIRTTELAAAQEKLHDLERQKE 161 (235)
Q Consensus 110 ~e~l~~~N~~LAe~NL~-----~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~ 161 (235)
+.+++++-+.+|..|.. ...+++++...+. ..-.++...+.+..++....+
T Consensus 11 l~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~-~~~~~l~~~k~Ei~elrr~iq 66 (77)
T 3trt_A 11 MRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAAN-RNNDALRQAKQESTEYRRQVQ 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444432 2344556665552 233445555555555544443
No 18
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Probab=72.12 E-value=20 Score=25.39 Aligned_cols=52 Identities=12% Similarity=0.193 Sum_probs=34.3
Q ss_pred cCCHHHHHHHHHHHHH------HhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHH
Q 026674 166 LYSPASLLKRIQEAMN------KTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYHR 217 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a~~------eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH~ 217 (235)
..+.+-|...|+.... -.+++.+.|...+ -+|.|++++|+.-+......+|.
T Consensus 24 ~Is~~El~~~l~~~~~~~lg~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~ 84 (96)
T 1a4p_A 24 YLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGLTIACND 84 (96)
T ss_dssp SBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHCTTSSSCBCHHHHHHHHHHHHHHHHH
T ss_pred eECHHHHHHHHHHHcccccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 4567777766654211 1456677777766 26789999999887766555543
No 19
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=71.79 E-value=33 Score=27.68 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=4.5
Q ss_pred hHHHHHHHHHHH
Q 026674 183 TEEESENLHRQL 194 (235)
Q Consensus 183 aEeeSE~Lae~F 194 (235)
+++|-+.|+++|
T Consensus 122 Lq~EN~~LV~RW 133 (152)
T 3a7p_A 122 LKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 20
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=71.19 E-value=33 Score=26.33 Aligned_cols=87 Identities=20% Similarity=0.156 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHH
Q 026674 100 IDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSP--ASLLKRIQ 177 (235)
Q Consensus 100 l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp--~aL~~~Lq 177 (235)
.++++.++.....+..+...++..=-.++..+.+.+...+ .+...|..++..-++.+.++-..|+. ..+...|.
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k----~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~ 80 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSS----HQISALVLRAQASEILLEELQQGLSQAKRDVQEQMA 80 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665433344444444444332 23455556665556655555555543 23444455
Q ss_pred HHHHHhHHHHHHH
Q 026674 178 EAMNKTEEESENL 190 (235)
Q Consensus 178 ~a~~eaEeeSE~L 190 (235)
.....-+..|+.|
T Consensus 81 ~Lt~~Re~V~~eL 93 (112)
T 1x79_B 81 VLMQSREQVSEEL 93 (112)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
No 21
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A*
Probab=68.92 E-value=31 Score=25.13 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHHHH-------HhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHH
Q 026674 166 LYSPASLLKRIQEAMN-------KTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYH 216 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a~~-------eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH 216 (235)
..+.+-|...|+..+. -.+++.+.|...+ -+|.|++++|+.-+......+|
T Consensus 30 ~Is~~El~~~l~~~lg~~~~~~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~~~~~ 90 (113)
T 1xk4_C 30 TLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMARLTWASH 90 (113)
T ss_dssp SBCHHHHHHHHHHHTTTTTTTGGGCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHhhhhhcccccCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHHHHHHHH
Confidence 4577777777763322 2466777777776 2678999999988766554443
No 22
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=65.94 E-value=49 Score=26.36 Aligned_cols=50 Identities=6% Similarity=0.071 Sum_probs=23.4
Q ss_pred CHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 89 DKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 89 d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
..+.++.|+.....|+.....+......+..+-+..|.--.....+|.++
T Consensus 34 ~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~l 83 (180)
T 1s94_A 34 GGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEEL 83 (180)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 34556778777666665555555555555555444444222223344444
No 23
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=65.26 E-value=5.6 Score=37.07 Aligned_cols=50 Identities=12% Similarity=0.297 Sum_probs=24.5
Q ss_pred hcCCHHHHHHHH------HHHHHHh-----HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHH
Q 026674 165 KLYSPASLLKRI------QEAMNKT-----EEESENLHRQLLDR--ELDIGAFVQKYKKLRTT 214 (235)
Q Consensus 165 ~~~Sp~aL~~~L------q~a~~ea-----EeeSE~Lae~FL~G--eidvd~FL~qF~e~Rkl 214 (235)
..|+|+.+..+| ...+.++ +++.+++++++++| +.++++|++++...++.
T Consensus 281 ~~f~p~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~km 343 (433)
T 3kl4_A 281 ETFNAKRFVSRILGMGDIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKM 343 (433)
T ss_dssp EECCHHHHHHHHHCSSHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHhcCCchHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 578888777642 2222222 23458899999999 89999999999988874
No 24
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=64.97 E-value=94 Score=29.27 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 026674 32 PDSSRPATPSMSSFGSLNLQRPT 54 (235)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~ 54 (235)
+.+.||+.|+-||+. .-.||+
T Consensus 30 ~~~~~~~~~~~~~~~--~~~~~~ 50 (464)
T 1m1j_B 30 APTLRPVAPPISGTG--YQPRPP 50 (464)
T ss_dssp -----------------------
T ss_pred CCCCCCCCCCcCCCC--cCCCCC
Confidence 345667666666554 455554
No 25
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=64.35 E-value=28 Score=23.00 Aligned_cols=29 Identities=21% Similarity=0.094 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 110 RDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 110 ~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
..++..++..|+..|..+..-|.+.|.++
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el 39 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQL 39 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777776666677655
No 26
>1v74_B Colicin D immunity protein; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: a.24.20.1 PDB: 1tfk_B* 1tfo_B
Probab=64.11 E-value=7.3 Score=28.71 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=21.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH
Q 026674 189 NLHRQLLDRELDIGAFVQKYKKLRT 213 (235)
Q Consensus 189 ~Lae~FL~Geidvd~FL~qF~e~Rk 213 (235)
.+|+.|++|+|+-+.|.+.|...+.
T Consensus 8 ~la~~Fv~~~IsA~~F~ee~wr~er 32 (87)
T 1v74_B 8 DLAKLFLASKITAIEFSERICVERR 32 (87)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHh
Confidence 5799999999999999997776654
No 27
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=59.22 E-value=31 Score=22.79 Aligned_cols=36 Identities=11% Similarity=0.184 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 103 VKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 103 vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
+.++......|.+.|..|++..-.-..+|..|+.+|
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888899999888888888888888877
No 28
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100 family, EF-hand protein, complex (ligand/annexin), ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB: 1nsh_A
Probab=58.24 E-value=29 Score=23.80 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHH------HHHhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHH
Q 026674 167 YSPASLLKRIQEA------MNKTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYHRR 218 (235)
Q Consensus 167 ~Sp~aL~~~Lq~a------~~eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH~R 218 (235)
.+.+-+...|+.. ..-.+++.+.+...+ -+|.|++++|+.-+......||.-
T Consensus 32 I~~~el~~~l~~~~~~~~~~~~~~~~~~~l~~~~D~~~dg~I~~~EF~~~~~~~~~~~~~~ 92 (99)
T 1qls_A 32 ISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGGLAIACHDS 92 (99)
T ss_dssp BCHHHHHHHHTTTSHHHHHHCCCTHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHcchhccccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 3555555555421 112445666666665 357899999999998888888864
No 29
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=58.02 E-value=50 Score=24.02 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 107 NNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 107 ~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
+..+.+.+.+|+.|-+..-.+..+|..+|.+.
T Consensus 30 r~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en 61 (83)
T 1wlq_A 30 RKALYEALKENEKLHKEIEQKDSEIARLRKEN 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777888888888777888777777765
No 30
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=57.77 E-value=78 Score=25.95 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=31.6
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHHHHHHHHH
Q 026674 178 EAMNKTEEESENLHRQLLDRELDIGAFVQKYKKL-RTTYHRRALVH 222 (235)
Q Consensus 178 ~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~-RklyH~Rr~K~ 222 (235)
+.-...|.--..|.+.|..|.|+++.||+..+.. |..|-.|.+..
T Consensus 122 Aed~AieDaIy~L~~al~~g~I~ld~ylK~vR~LaReQF~~ral~~ 167 (174)
T 2p22_A 122 AQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQ 167 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556667888889999999999997764 55555565553
No 31
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}
Probab=57.23 E-value=45 Score=24.31 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=37.7
Q ss_pred cCCHHHHHHHHHHHHH------HhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHH
Q 026674 166 LYSPASLLKRIQEAMN------KTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYHRR 218 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a~~------eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH~R 218 (235)
..+.+-|...|+.... ..+++.+.|.+.+ -+|.|++++|+.-....-..||..
T Consensus 31 ~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~m~~~~~~~~~~ 92 (104)
T 3zwh_A 31 KLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSSIAMMSNEF 92 (104)
T ss_dssp SBCHHHHHHHHHHHCGGGSCSSCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHHHH
T ss_pred eECHHHHHHHHHHHcchhccCCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4566667766665322 1477788887776 368899999999888877777763
No 32
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=56.66 E-value=21 Score=23.70 Aligned_cols=30 Identities=10% Similarity=-0.055 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 109 IRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 109 ~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
+.+.|+.+|.+|-..+-.+..++.+++.++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666665555555555555555544
No 33
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.2 PDB: 1ozo_A
Probab=56.40 E-value=48 Score=23.23 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHH------HHHhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHH
Q 026674 166 LYSPASLLKRIQEA------MNKTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYHRRAL 220 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a------~~eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH~Rr~ 220 (235)
..+.+-|...|+.. ..-.+++.+.|...+ -+|.|++++|+.-+......||..-.
T Consensus 27 ~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~ 90 (95)
T 1j55_A 27 TLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAAITSACHKYFE 90 (95)
T ss_dssp EECHHHHHHHHHHHSTTCC------CHHHHHHHHHCSSSSSSEEHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhHhhcccccCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 35667777766642 123456677777776 25789999999988877777776543
No 34
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=56.26 E-value=58 Score=27.52 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 107 NNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLL 164 (235)
Q Consensus 107 ~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~ 164 (235)
+..+.+.+.+|+.|.+..-.++.+|..+|.++ .+|+.|.+..+.+-.-++.|.
T Consensus 107 R~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn-----~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 107 RKALYEALKENEKLHKEIEQKDNEIARLKKEN-----KELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 44677788899999988888888888888765 355555555555554444444
No 35
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=56.23 E-value=25 Score=23.73 Aligned_cols=51 Identities=22% Similarity=0.265 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHHH-----H-HHhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHH
Q 026674 166 LYSPASLLKRIQEA-----M-NKTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYH 216 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a-----~-~eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH 216 (235)
..+.+-+...|... . .-.+++.+.+...+ -+|.|++++|+.-+....+.+|
T Consensus 27 ~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~~~~~~ 86 (93)
T 1k2h_A 27 KLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACN 86 (93)
T ss_dssp SCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 34556665555542 1 12455666666665 3678999999998887766665
No 36
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.01 E-value=65 Score=24.55 Aligned_cols=37 Identities=24% Similarity=0.544 Sum_probs=17.7
Q ss_pred HHHHHHHHHhHHHHHHHHHH---HhcCCCCHHHHHHHHHH
Q 026674 174 KRIQEAMNKTEEESENLHRQ---LLDRELDIGAFVQKYKK 210 (235)
Q Consensus 174 ~~Lq~a~~eaEeeSE~Lae~---FL~Geidvd~FL~qF~e 210 (235)
..|..++.++-.+....... +|+-++.+|.=|..|++
T Consensus 85 ~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRk 124 (129)
T 3tnu_B 85 AELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRK 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333 34555555555666643
No 37
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}
Probab=55.92 E-value=39 Score=24.06 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=36.9
Q ss_pred cCCHHHHHHHHHHHHH------HhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 026674 166 LYSPASLLKRIQEAMN------KTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYHRRALV 221 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a~~------eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH~Rr~K 221 (235)
..+.+-|...|+.... -.+++.+.|...+ -+|.|++++|+.-.......||.--.+
T Consensus 28 ~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~ 92 (99)
T 2y5i_A 28 KLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAALTVACNDFFQE 92 (99)
T ss_dssp EECHHHHHHHHHHHSGGGGTTSCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHHHHHHhc
Confidence 3466667666654221 2456677777766 267899999999887777677654433
No 38
>4ayb_Q DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_J 4b1o_Q 4b1p_J 2y0s_J 2waq_Q
Probab=55.87 E-value=16 Score=27.17 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026674 189 NLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKTHS 229 (235)
Q Consensus 189 ~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~a~~~~~ 229 (235)
+|=.++|.|+|++++--+.|..--..|-.|..|+.|-++.+
T Consensus 49 EIWd~Ll~gkISIeEAKK~Fedn~~~yek~d~k~ka~~~~~ 89 (104)
T 4ayb_Q 49 EIWDNLLNGKISVDEAKRLFEDNYKDYEKRDSRRKAKKAAS 89 (104)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45667889999999999999999999999999998888754
No 39
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=55.63 E-value=1.4e+02 Score=28.34 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=9.2
Q ss_pred HHHHHHHhcHHHHHHHH
Q 026674 92 AYRQFLLSIDQVKIQNN 108 (235)
Q Consensus 92 ~l~~~v~~l~~vq~l~~ 108 (235)
+|..|-.+|.-|+.-+.
T Consensus 10 ~la~yq~elarvqkana 26 (497)
T 3iox_A 10 KLTAYQTELARVQKANA 26 (497)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555556655555443
No 40
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=54.71 E-value=46 Score=25.14 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=14.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 130 RMIELRNQSKIIRTTELAAAQEKLHDLERQKE 161 (235)
Q Consensus 130 ~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~ 161 (235)
+++-||+.+. +.-+.+..++.++.++.+..+
T Consensus 31 qVdlLKD~LE-e~eE~~aql~Re~~eK~re~e 61 (103)
T 4h22_A 31 QVDTLKDMLL-ELEEQLAESRRQYEEKNKEFE 61 (103)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3555555552 222334555555555554433
No 41
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=53.98 E-value=57 Score=23.29 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHHHH------HhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHH
Q 026674 166 LYSPASLLKRIQEAMN------KTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYHRR 218 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a~~------eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH~R 218 (235)
.-+.+-|...|+.... ..+++.+.+.+.+ -+|.|++++|+.-....-..||..
T Consensus 29 ~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~~~~~~~~~ 90 (98)
T 3n22_A 29 KLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLALITVMSNDF 90 (98)
T ss_dssp SBCHHHHHHHHHHHCHHHHCSSCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHHHHHHC
T ss_pred eECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4566777776665322 1467777777776 368899999999888888888864
No 42
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=53.61 E-value=32 Score=25.07 Aligned_cols=52 Identities=21% Similarity=0.219 Sum_probs=35.3
Q ss_pred cCCHHHHHHHHHHHH------HHhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHH
Q 026674 166 LYSPASLLKRIQEAM------NKTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYHR 217 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a~------~eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH~ 217 (235)
..+.+-|...|.... .-.+++.++|-+.+ -+|.|++++|+.-....-..||.
T Consensus 28 ~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~~~~~~~~~~~ 88 (101)
T 3nso_A 28 KLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACLCLYCHE 88 (101)
T ss_dssp EECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHCCCSCEEHHHHHHHHHHHHHHHCG
T ss_pred EECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 455666666665422 22466777776665 36899999999987777777765
No 43
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=52.53 E-value=47 Score=22.00 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=14.7
Q ss_pred hhhHHhccCCHHHHHHHh
Q 026674 70 GIIALLKDKSVDELRKLL 87 (235)
Q Consensus 70 ~~f~~L~~LS~~EL~eLL 87 (235)
+-|..|+.+|.+||+.-+
T Consensus 2 gdf~fLk~ls~eEL~~rl 19 (51)
T 2jo8_A 2 SDYEFLKSWTVEDLQKRL 19 (51)
T ss_dssp CCCGGGGGSCHHHHHHHH
T ss_pred CccHHHHhCCHHHHHHHH
Confidence 357889999999998776
No 44
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A
Probab=50.22 E-value=45 Score=22.11 Aligned_cols=51 Identities=24% Similarity=0.306 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHH----HHHhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHH
Q 026674 167 YSPASLLKRIQEA----MNKTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYHR 217 (235)
Q Consensus 167 ~Sp~aL~~~Lq~a----~~eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH~ 217 (235)
.+.+-+...|+.. ..-.+++.+.+...+ -+|.|++++|+.-+......+|.
T Consensus 29 i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~~~~~~~ 86 (90)
T 1k8u_A 29 LSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGALALIYNE 86 (90)
T ss_dssp EEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHTTTCEEEHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3445555555431 112345566665555 36789999999988877766653
No 45
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A
Probab=50.01 E-value=58 Score=22.21 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHH--HhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHH
Q 026674 167 YSPASLLKRIQEAMN--KTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYHR 217 (235)
Q Consensus 167 ~Sp~aL~~~Lq~a~~--eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH~ 217 (235)
.+.+-|...|...+. -.+++.+.|...+ -+|.|++++|+.-+......+|.
T Consensus 29 I~~~El~~~l~~~~g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~~~~~~~ 84 (93)
T 1xk4_A 29 VYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVAAHK 84 (93)
T ss_dssp BCHHHHHHHHHHHSCHHHHTTCHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHCcccCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 455556555522111 1224456666665 25789999999988777666654
No 46
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=47.52 E-value=1.2e+02 Score=28.81 Aligned_cols=32 Identities=9% Similarity=0.190 Sum_probs=14.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHH
Q 026674 175 RIQEAMNKTEEESENLHRQLLDRELDIGAFVQ 206 (235)
Q Consensus 175 ~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~ 206 (235)
||..+|...=+-|..=..+.++-++|++...+
T Consensus 150 RLE~dI~~q~~~Cr~pC~r~~~y~VD~~~Ye~ 181 (491)
T 1m1j_A 150 RLEVDIDIKIRACKGSCARSFDYQVDKEGYDN 181 (491)
T ss_dssp HHHHHHHHHHHTTTTTBSSCCCCCCCTTTTHH
T ss_pred HHHHHHHHHHHHhcchhhhhHHhhhcHHHHHH
Confidence 34444444444443333344555666655543
No 47
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=47.51 E-value=1.1e+02 Score=24.62 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHH
Q 026674 144 TELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEE 186 (235)
Q Consensus 144 ~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEee 186 (235)
+|+..|+-++..++.+...+-.. +-.-+-..++....++|..
T Consensus 103 DEl~aLqlq~n~lE~kl~kLq~E-N~~LV~RWM~rk~qEAe~M 144 (152)
T 3a7p_A 103 AALISGTIENNVLQQKLSDLKKE-HSQLVARWLKKTEKETEAM 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433322 1122223355555555443
No 48
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100 protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Probab=47.33 E-value=26 Score=24.95 Aligned_cols=51 Identities=22% Similarity=0.382 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHH----H----HHhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHH
Q 026674 166 LYSPASLLKRIQEA----M----NKTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYH 216 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a----~----~eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH 216 (235)
..+.+-|...|+.. + .-.+++.+.|...+ -+|.|++++|+.-....-..+|
T Consensus 25 ~Is~~El~~~l~~~~~~~lg~~~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~~~~~~~~ 86 (100)
T 1psr_A 25 KIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLLGDIATDYH 86 (100)
T ss_dssp CBCHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHCTTCSSCBCHHHHHHHHHHHHHHHH
T ss_pred eECHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 45666666666542 1 22445566666665 2678999999988766555554
No 49
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=46.09 E-value=83 Score=22.84 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 107 NNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 107 ~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
+..+.+.+.+|+.|.+..-.++.++..+|..+
T Consensus 38 R~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en 69 (83)
T 1uii_A 38 RKALYEALKENEKLHKEIEQKDNEIARLKKEN 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677778888888888777777777777655
No 50
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=45.14 E-value=30 Score=24.24 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 102 QVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 102 ~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
.++++...+.++...+..|...|-.+...|..|..++
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666665555555555555555444
No 51
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=44.91 E-value=1.9e+02 Score=26.64 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=22.5
Q ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 123 DNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKE 161 (235)
Q Consensus 123 ~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~ 161 (235)
.+.+++.++..|+..| ...+..|+.|+.-++++..+++
T Consensus 114 ~s~eLe~~i~~lk~~V-~~q~~~ir~Lq~~l~~q~~kiq 151 (390)
T 1deq_A 114 INEDLRSRIEILRRKV-IEQVQRINLLQKNVRDQLVDMK 151 (390)
T ss_pred HHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHH
Confidence 3445666677777766 4555566666666555544333
No 52
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Probab=44.03 E-value=30 Score=24.33 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHH------HhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHH
Q 026674 167 YSPASLLKRIQEAMN------KTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYHR 217 (235)
Q Consensus 167 ~Sp~aL~~~Lq~a~~------eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH~ 217 (235)
.+.+-|...|+.... -.+++.+.+...+ -+|.|++++|+.-.......||.
T Consensus 31 I~~~El~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~ 90 (95)
T 2wcb_A 31 LSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHY 90 (95)
T ss_dssp EEHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTTSSSSTTSEEEHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 456666666654211 1355566665554 25789999999988887777775
No 53
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=43.80 E-value=1.2e+02 Score=24.00 Aligned_cols=15 Identities=20% Similarity=0.189 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 026674 108 NIRDELHRETLQIAR 122 (235)
Q Consensus 108 ~~~e~l~~~N~~LAe 122 (235)
..++.+..++..+|+
T Consensus 81 ~~le~l~~~i~~~a~ 95 (180)
T 1s94_A 81 EELEELMTDIKRTAN 95 (180)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 54
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=42.51 E-value=64 Score=21.39 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 110 RDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 110 ~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
.+.|......|...|..+..++..|+.++
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555666666554
No 55
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=42.31 E-value=2e+02 Score=26.25 Aligned_cols=50 Identities=20% Similarity=0.374 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC------HHHHH---HHHHHHHHHhHHHHHHHHHHH
Q 026674 145 ELAAAQEKLHDLERQKEQLLKLYS------PASLL---KRIQEAMNKTEEESENLHRQL 194 (235)
Q Consensus 145 el~~L~e~~~ek~~q~~~l~~~~S------p~aL~---~~Lq~a~~eaEeeSE~Lae~F 194 (235)
+.+.++.+++++.++.+.++.... .+.|+ ..|...+++++++..++.+++
T Consensus 36 ~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (421)
T 1ses_A 36 EVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARL 94 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444332 12222 235566666666666666655
No 56
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=41.76 E-value=3e+02 Score=32.22 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026674 83 LRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNL-------DKELRMIELRNQSKIIRTTELAAAQEKLHD 155 (235)
Q Consensus 83 L~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL-------~~e~~L~elR~ql~~~~~~el~~L~e~~~e 155 (235)
|+++..+...-+.-=......+..-+....-.++.+.-|+.-| .++.+|.++..++ .....+|++++.++.+
T Consensus 1961 l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l-~~~~~~L~~~~~~L~~ 2039 (3245)
T 3vkg_A 1961 LKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAA-NELKLKQDEIVATITA 2039 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhcCCHHHH-HHHHHHHHHHhHHHHHHHHHHHhcC
Q 026674 156 LERQKEQLLKLYSPASL-LKRIQEAMNKTEEESENLHRQLLDR 197 (235)
Q Consensus 156 k~~q~~~l~~~~Sp~aL-~~~Lq~a~~eaEeeSE~Lae~FL~G 197 (235)
++.+++.+...|....- +.+|+..+..++..-+. |+++++|
T Consensus 2040 le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~r-A~~Li~g 2081 (3245)
T 3vkg_A 2040 LEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR-SIALLDN 2081 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
No 57
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=41.66 E-value=53 Score=24.40 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHHHH------HhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHH
Q 026674 166 LYSPASLLKRIQEAMN------KTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYHR 217 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a~~------eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH~ 217 (235)
..+.+-|...|+.... -.+++.+.|...+ -+|.|++++|+.-....-..+|.
T Consensus 40 ~Is~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~D~dgdG~Idf~EF~~~m~~~~~~~~~ 100 (113)
T 2lnk_A 40 KLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNE 100 (113)
T ss_dssp CBCHHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHHCSSSSSCBCHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHcchhcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHHHHHHH
Confidence 3466677766654211 1456777777776 26789999999887765555543
No 58
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=40.20 E-value=1.1e+02 Score=23.01 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=26.5
Q ss_pred hhhHHhccCCHHHHHHHh-cCHHHHHHHHHhcHHHHHHHHHHHHHH
Q 026674 70 GIIALLKDKSVDELRKLL-ADKDAYRQFLLSIDQVKIQNNIRDELH 114 (235)
Q Consensus 70 ~~f~~L~~LS~~EL~eLL-~d~d~l~~~v~~l~~vq~l~~~~e~l~ 114 (235)
.+|..+..+..+.+..+. +|++.+..++..+ +..+...+..+.
T Consensus 7 ~~~~~~~~~D~~~~l~~a~g~~~La~elL~~f--l~~~~~~~~~l~ 50 (123)
T 3iqt_A 7 IVVNPNATLDWQLALRQAAGKTDLARDMLQML--LDFLPEVRNKVE 50 (123)
T ss_dssp CCSCGGGTCCHHHHHHHTTTCHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hhccCCCccCHHHHHHHhCCCHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 344445567888888877 6677777777765 444444444443
No 59
>1cf4_B Protein (activated P21CDC42HS kinase); CDC42/ACK GTPase complex, G protein, transferase; HET: GNP; NMR {Homo sapiens}
Probab=40.18 E-value=9.9 Score=24.55 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=8.3
Q ss_pred CCCcccCCCC
Q 026674 20 TSQSWYPPSV 29 (235)
Q Consensus 20 ~~~~~~~p~~ 29 (235)
++++||+|+.
T Consensus 27 ~~~sWG~P~~ 36 (44)
T 1cf4_B 27 PRHCWGFPDR 36 (44)
T ss_dssp CSSCCCSSCC
T ss_pred cccccCChhH
Confidence 5899999964
No 60
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=40.14 E-value=1.6e+02 Score=24.48 Aligned_cols=77 Identities=9% Similarity=0.073 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 026674 145 ELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALV 221 (235)
Q Consensus 145 el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K 221 (235)
.++..+..|+....+|+....+|.--.=...-.....+++.+-...-..|..-.+|.-..+......++.-+++.+.
T Consensus 125 ~~ke~kk~fdk~~~~yd~al~k~~~~~k~k~~e~~l~Ea~~~l~~~Rk~f~~~~ldyv~~l~~l~~kk~~e~le~l~ 201 (265)
T 2q12_A 125 EILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLL 201 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666444433211100000112235555555555566544455555555555555555555444
No 61
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=39.99 E-value=1.1e+02 Score=22.45 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=12.0
Q ss_pred hhHHhccCCHHHHHHHhcC
Q 026674 71 IIALLKDKSVDELRKLLAD 89 (235)
Q Consensus 71 ~f~~L~~LS~~EL~eLL~d 89 (235)
+--.|.+||.+|+..|=+=
T Consensus 11 LN~~L~gls~eev~~lKq~ 29 (90)
T 2wt7_B 11 LNRHLRGFTKDEVIRLKQK 29 (90)
T ss_dssp HHTTCTTCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 3335678888888765443
No 62
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=38.11 E-value=1.2e+02 Score=22.27 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=27.1
Q ss_pred hcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 026674 165 KLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYH 216 (235)
Q Consensus 165 ~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH 216 (235)
..++|+.|...|+.. .+-=-+||.++-.=--.|+..-++|...|+-++
T Consensus 42 ~~~Tpq~L~~~l~~~----h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~~~ 89 (93)
T 3t98_B 42 SHITPQDLSMAMQKI----YQTFVALAAQLQSIHENVKVLKEQYLSYRKMFL 89 (93)
T ss_dssp TTSCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888887766533 222222333221100148888888888888765
No 63
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=37.83 E-value=64 Score=29.62 Aligned_cols=29 Identities=17% Similarity=0.507 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Q 026674 184 EEESENLHRQLLDR-ELDIGAFVQKYKKLR 212 (235)
Q Consensus 184 EeeSE~Lae~FL~G-eidvd~FL~qF~e~R 212 (235)
+++.+.+.++|+.| +.++++|++++...+
T Consensus 313 ~~~~~~l~~k~~~~~~f~~~d~~~ql~~~~ 342 (433)
T 2xxa_A 313 RAQAEKLASKLKKGDGFDLNDFLEQLRQMK 342 (433)
T ss_dssp HHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34468899999999 899999999998844
No 64
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=37.55 E-value=1.8e+02 Score=24.20 Aligned_cols=12 Identities=8% Similarity=0.105 Sum_probs=6.8
Q ss_pred cCHHHHHHHHHh
Q 026674 88 ADKDAYRQFLLS 99 (235)
Q Consensus 88 ~d~d~l~~~v~~ 99 (235)
+|+..+-.++..
T Consensus 167 ~dp~~Lad~ia~ 178 (252)
T 3ljc_A 167 DDPARLADTIAA 178 (252)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 556665555554
No 65
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A
Probab=37.50 E-value=14 Score=25.88 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHHHHH---HhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHH
Q 026674 166 LYSPASLLKRIQEAMN---KTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYH 216 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a~~---eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH 216 (235)
..+.+-|...|+.... -.+++.+.+...+ -+|.|++++|+.-+....+.+|
T Consensus 28 ~I~~~El~~~l~~~~~~~~~~~~~i~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~ 84 (92)
T 2kax_A 28 TLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFLTMLCMAYN 84 (92)
T ss_dssp EEEHHHHHHHHHHHSCCTTTCCTTHHHHHHHHTTTCSSEEEHHHHHHHHHHHHHTSG
T ss_pred eeCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 3456666666654211 3445566666665 2578999999998887776666
No 66
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=37.33 E-value=52 Score=21.80 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=5.9
Q ss_pred CHHHHHHHHHh
Q 026674 89 DKDAYRQFLLS 99 (235)
Q Consensus 89 d~d~l~~~v~~ 99 (235)
|++.+++|+..
T Consensus 21 ~~~EVD~FLd~ 31 (57)
T 2wuj_A 21 DEDEVNEFLAQ 31 (57)
T ss_dssp EHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 45555666544
No 67
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=37.20 E-value=93 Score=20.90 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 109 IRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 109 ~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
..+.|......|...|.++..+|..|+.++
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777877888887777766
No 68
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=36.71 E-value=2.5e+02 Score=26.45 Aligned_cols=11 Identities=18% Similarity=0.153 Sum_probs=5.9
Q ss_pred HHHHhcCHHHH
Q 026674 83 LRKLLADKDAY 93 (235)
Q Consensus 83 L~eLL~d~d~l 93 (235)
++-|.+|++.+
T Consensus 43 ~~~ir~n~~~v 53 (501)
T 1wle_A 43 MESLCAYPEDA 53 (501)
T ss_dssp HHHHHHSHHHH
T ss_pred HHHHHhCHHHH
Confidence 44455566555
No 69
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=36.66 E-value=1e+02 Score=29.94 Aligned_cols=26 Identities=8% Similarity=0.083 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhc
Q 026674 171 SLLKRIQEAMNKTEEESENLHRQLLD 196 (235)
Q Consensus 171 aL~~~Lq~a~~eaEeeSE~Lae~FL~ 196 (235)
+....+.....+++..+..|..++.+
T Consensus 601 ~~~~~~~~~~~~l~~~~~~i~~r~~e 626 (675)
T 3d2f_A 601 SIKAKYIAKYEELASLGNIIRGRYLA 626 (675)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666777776666654
No 70
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=36.61 E-value=1.3e+02 Score=27.87 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=13.3
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 026674 175 RIQEAMNKTEEESENLHRQL 194 (235)
Q Consensus 175 ~Lq~a~~eaEeeSE~Lae~F 194 (235)
.|...+++++++..++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 80 EIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36666677777777766665
No 71
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=35.72 E-value=1.6e+02 Score=26.63 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=31.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcC--CC-------CHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 026674 174 KRIQEAMNKTEEESENLHRQLLDR--EL-------DIGAFVQKYKKLRTTYHRRALVHLSAKTH 228 (235)
Q Consensus 174 ~~Lq~a~~eaEeeSE~Lae~FL~G--ei-------dvd~FL~qF~e~RklyH~Rr~K~~a~~~~ 228 (235)
..|+.....+.+.-+.+++=|-+. .+ .+.+|+..|+..++.-..|+.++.+.+-.
T Consensus 330 ~~L~~~~~~~~~~~~~l~~yFgedpk~~~~~~fF~~~~~F~~~fk~A~~en~~r~~~e~~~~~~ 393 (402)
T 4eah_A 330 DKLQRDAKTAEEAYNAVVRYFGESPKTTPPSVFFPVFVRFIRSYKEAEQENEARKKQEEVMREK 393 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555556666655332 12 37889999999999998888876665543
No 72
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=35.71 E-value=21 Score=24.52 Aligned_cols=27 Identities=7% Similarity=0.177 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 026674 184 EEESENLHRQLLDRELDIGAFVQKYKK 210 (235)
Q Consensus 184 EeeSE~Lae~FL~Geidvd~FL~qF~e 210 (235)
|.+--++++.+..|+|+.++-+++|++
T Consensus 29 d~~~l~~~erwv~GEis~~e~i~~~~~ 55 (61)
T 3shg_B 29 DPQVVAQMERVVVGELETSDVIKDLME 55 (61)
T ss_dssp CHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 444556788999999999999999986
No 73
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=35.30 E-value=86 Score=19.90 Aligned_cols=32 Identities=25% Similarity=0.214 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 026674 103 VKIQNNIRDELHRETLQIARDNLDKELRMIEL 134 (235)
Q Consensus 103 vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~el 134 (235)
|..+.+++..|.++|+.|-+.||-+..-|.-+
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliayl 36 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYL 36 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHH
Confidence 55667788889999999999998877544333
No 74
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=34.89 E-value=1.3e+02 Score=21.87 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026674 116 ETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLK 165 (235)
Q Consensus 116 ~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~ 165 (235)
++.+|-..-+..+|+|..+=... ..++++|..|.++|.....-|+.+++
T Consensus 36 eiq~LY~~v~~lRPkL~~li~ky-sqKk~eL~~Ln~kl~~a~~~Yd~lle 84 (88)
T 2pjw_H 36 HIGDMYGSVTPLRPQVTRMLGKY-AKEKEDMLSLRQVLANAERSYNQLMD 84 (88)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566667778777777777 45777888888888888888877664
No 75
>1eq1_A Apolp-III, apolipophorin-III; five helix-bundle, "helix-short helix-helix" recognition motif, lipid binding protein; NMR {Manduca sexta} SCOP: a.63.1.1
Probab=34.68 E-value=97 Score=24.74 Aligned_cols=47 Identities=19% Similarity=0.423 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcC------C----C--CHHHHHHHHHHHHHHHHH
Q 026674 171 SLLKRIQEAMNKTEEESENLHRQLLDR------E----L--DIGAFVQKYKKLRTTYHR 217 (235)
Q Consensus 171 aL~~~Lq~a~~eaEeeSE~Lae~FL~G------e----i--dvd~FL~qF~e~RklyH~ 217 (235)
.|..+|+.++...-.||..|+...-.. + | -.|+|+++-.+..+.-|.
T Consensus 103 ~lrdkLqaAVQ~t~qesqkLaKeVasn~eetN~KLaPkiK~Ay~dF~K~aeevqKK~he 161 (166)
T 1eq1_A 103 AFKDKLQAAVQTTVQESQKLAKEVASNMEETNKKLAPKIKQAYDDFVKHAEEVQKKLHE 161 (166)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999986321 1 1 378999998888777664
No 76
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=34.61 E-value=1.6e+02 Score=22.93 Aligned_cols=26 Identities=4% Similarity=0.201 Sum_probs=16.6
Q ss_pred CHHHHHHHHHhcHHHHHHHHHHHHHH
Q 026674 89 DKDAYRQFLLSIDQVKIQNNIRDELH 114 (235)
Q Consensus 89 d~d~l~~~v~~l~~vq~l~~~~e~l~ 114 (235)
.=+.|...|.+.+.++.++...+.+.
T Consensus 12 ~A~eL~~aI~eseeyk~yk~A~~~i~ 37 (151)
T 2pih_A 12 QARNLAKMISETEEVDFFKRAEAQIN 37 (151)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 33456666667777777776665555
No 77
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=34.48 E-value=2.4e+02 Score=24.92 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcCCC-CHHHH----HHHHHHHHHHHHHHHHHHHHh
Q 026674 172 LLKRIQEAMNKTEEESENLHRQLLDREL-DIGAF----VQKYKKLRTTYHRRALVHLSA 225 (235)
Q Consensus 172 L~~~Lq~a~~eaEeeSE~Lae~FL~Gei-dvd~F----L~qF~e~RklyH~Rr~K~~a~ 225 (235)
++..+.....+....-+.|..+.-+.-+ .|..| |+.|++.|+.+.....++-++
T Consensus 108 ~l~~f~~~~~ei~~~~~~L~~~~~~~i~~pL~~f~k~di~~~ke~kK~Fek~~~~Yd~~ 166 (407)
T 4h8s_A 108 TLHYFSKVVDELNLLHTELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGLASNEHDLS 166 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444322211 24444 566777788777766665443
No 78
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=34.28 E-value=61 Score=22.05 Aligned_cols=32 Identities=28% Similarity=0.284 Sum_probs=25.5
Q ss_pred hhhhHHhccCCHHHHHHHhcCHHHHHHHHHhc
Q 026674 69 AGIIALLKDKSVDELRKLLADKDAYRQFLLSI 100 (235)
Q Consensus 69 ~~~f~~L~~LS~~EL~eLL~d~d~l~~~v~~l 100 (235)
+-|-+=|-.++..||-.|++|++.|.+.|.+-
T Consensus 22 ~KITGMLLE~d~~ell~ll~~~e~L~~kv~EA 53 (61)
T 1i2t_A 22 SKITGMLLELSPAQLLLLLASEDSLRARVDEA 53 (61)
T ss_dssp HHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred cchhhhhccCCHHHHHHHHcCHHHHHHHHHHH
Confidence 44444466799999999999999999888653
No 79
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=34.02 E-value=2.7e+02 Score=25.33 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=18.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026674 130 RMIELRNQSKIIRTTELAAAQEKLHDLERQKEQL 163 (235)
Q Consensus 130 ~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l 163 (235)
...+++.+++ .--.+++.++++..+++.+++.+
T Consensus 65 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 65 EKEALIARGK-ALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555553 22345666777777776666644
No 80
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=33.97 E-value=2.9 Score=31.97 Aligned_cols=16 Identities=38% Similarity=0.299 Sum_probs=12.8
Q ss_pred HHhccCCHHHHHHHhc
Q 026674 73 ALLKDKSVDELRKLLA 88 (235)
Q Consensus 73 ~~L~~LS~~EL~eLL~ 88 (235)
..|-+||+.||..+|.
T Consensus 11 ~~Lv~m~v~elN~~L~ 26 (107)
T 3a5t_A 11 EELVTMSVRELNQHLR 26 (107)
T ss_dssp HHHHHSCHHHHHHTTT
T ss_pred HHHhcCCHHHHHHHHh
Confidence 3677899999999883
No 81
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Probab=33.15 E-value=41 Score=24.23 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHHHH------HhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHH
Q 026674 166 LYSPASLLKRIQEAMN------KTEEESENLHRQL---LDRELDIGAFVQKYKKLRTTYHR 217 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a~~------eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~RklyH~ 217 (235)
..+.+-|...|..... ..+++.+.|...+ -+|.|++++|+.-....-+.||.
T Consensus 30 ~Is~~EL~~~l~~~~~~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~m~~~~~~~~~ 90 (100)
T 3nxa_A 30 KISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLIGGITGPIAK 90 (100)
T ss_dssp CBCHHHHHHHHHHHSTTTTCSSHHHHHHHHHHHHSCCCSSCCBCHHHHHHHHHHHHGGGHH
T ss_pred eEcHHHHHHHHHHHccccccccccHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4556666666654321 2256677777665 36889999999977766555554
No 82
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=32.78 E-value=1.9e+02 Score=25.52 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 026674 144 TELAAAQEKLHDLERQKEQLLKL 166 (235)
Q Consensus 144 ~el~~L~e~~~ek~~q~~~l~~~ 166 (235)
..++.++..|+....+|+....+
T Consensus 124 ~~~ke~kk~fek~~~~yd~al~k 146 (385)
T 2q13_A 124 KEILTLKEVFQIASNDHDAAINR 146 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666654433
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.67 E-value=2.8e+02 Score=25.01 Aligned_cols=10 Identities=20% Similarity=0.215 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 026674 173 LKRIQEAMNK 182 (235)
Q Consensus 173 ~~~Lq~a~~e 182 (235)
.++|+.++..
T Consensus 469 ~~~~~~~~~~ 478 (487)
T 3oja_A 469 NATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 3445555443
No 84
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=32.62 E-value=5.5 Score=30.93 Aligned_cols=23 Identities=0% Similarity=0.115 Sum_probs=16.9
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH
Q 026674 191 HRQLLDRELDIGAFVQKYKKLRT 213 (235)
Q Consensus 191 ae~FL~Geidvd~FL~qF~e~Rk 213 (235)
++++..|+.+++||++++...++
T Consensus 2 ~~k~~~g~Ftl~Df~~Ql~qi~k 24 (119)
T 2jqe_A 2 SGTMEKGTFTLKDIYKQIEAMNK 24 (119)
T ss_dssp ---CCCCSSCTHHHHHHHTTCCC
T ss_pred hhHHHcCCcCHHHHHHHHHHHHh
Confidence 46677899999999999976553
No 85
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=32.35 E-value=2e+02 Score=26.31 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=14.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 026674 174 KRIQEAMNKTEEESENLHRQL 194 (235)
Q Consensus 174 ~~Lq~a~~eaEeeSE~Lae~F 194 (235)
..|...+++++++..++.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~ 98 (425)
T 2dq3_A 78 KELKEEIDRLEEELRKVEEEL 98 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 446666777777777766665
No 86
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=31.68 E-value=2.3e+02 Score=23.78 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=13.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 115 RETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 115 ~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
..+-+..++|..++-+...+++..
T Consensus 122 ~~Lf~~~kEn~al~lEa~yre~~~ 145 (214)
T 2cly_A 122 HYLFDVQRNNIAMALEVTYRERLH 145 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566767766655555433
No 87
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=31.48 E-value=1.6e+02 Score=21.91 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 026674 186 ESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALV 221 (235)
Q Consensus 186 eSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K 221 (235)
+-|.|+.++-+|+++|++=++.|.+.-+++-.-.-+
T Consensus 38 eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~ 73 (100)
T 1vp7_A 38 ELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDR 73 (100)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777789999999999999988877654433
No 88
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=31.38 E-value=1.3e+02 Score=21.89 Aligned_cols=38 Identities=11% Similarity=0.082 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 101 DQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 101 ~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
++++++...+-.++-.+..+....-.+..+|..++.++
T Consensus 35 ~eiq~LY~~v~~lRPkL~~li~kysqKk~eL~~Ln~kl 72 (88)
T 2pjw_H 35 PHIGDMYGSVTPLRPQVTRMLGKYAKEKEDMLSLRQVL 72 (88)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555544
No 89
>3ohw_B Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.70A {Synechocystis SP}
Probab=31.31 E-value=76 Score=25.40 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHH
Q 026674 186 ESENLHRQLLDRELDIGAFVQKYK 209 (235)
Q Consensus 186 eSE~Lae~FL~Geidvd~FL~qF~ 209 (235)
+.-.++.+|.+|+|+|-+||+.--
T Consensus 49 r~~~lESqlrnG~IsVReFVR~La 72 (148)
T 3ohw_B 49 EFTALESKLSNNEINVKEFIEGLG 72 (148)
T ss_dssp HTHHHHHHHHTTSSCHHHHHHHHH
T ss_pred ccccHHHHHHcCCcCHHHHHHHHH
Confidence 446788899999999999998643
No 90
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=31.19 E-value=2.1e+02 Score=23.17 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHH
Q 026674 146 LAAAQEKLHDLERQKEQLL--KLYSPASLLKRI 176 (235)
Q Consensus 146 l~~L~e~~~ek~~q~~~l~--~~~Sp~aL~~~L 176 (235)
...+.++...+..+++.+. .+|++..+.+..
T Consensus 87 ~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~ 119 (175)
T 3lay_A 87 TSALRQQLISKRYEYNALLTASSPDTAKINAVA 119 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3445555556666666554 567776665543
No 91
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=30.90 E-value=3.5e+02 Score=25.66 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHH
Q 026674 150 QEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEE 186 (235)
Q Consensus 150 ~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEee 186 (235)
+..|+.+..+|+.-...|.-+ ++..+...++-+.+
T Consensus 61 ka~Ye~~l~kY~~dlakY~~~--~AeY~~kl~aYe~~ 95 (497)
T 3iox_A 61 KADYEAKLAKYQADLAKYQKD--LADYPVKLKAYEDE 95 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 334444444444333344333 33344444443333
No 92
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=30.57 E-value=83 Score=22.55 Aligned_cols=33 Identities=9% Similarity=0.047 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 026674 102 QVKIQNNIRDELHRETLQIARDNLDKELRMIEL 134 (235)
Q Consensus 102 ~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~el 134 (235)
.|+.+......+..+...|...|..+..+|.+|
T Consensus 53 YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 53 YILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444333
No 93
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=30.24 E-value=1.3e+02 Score=20.29 Aligned_cols=8 Identities=13% Similarity=0.110 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q 026674 131 MIELRNQS 138 (235)
Q Consensus 131 L~elR~ql 138 (235)
+.+|..+|
T Consensus 27 v~~Le~~c 34 (58)
T 3a2a_A 27 IQHLEFSC 34 (58)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 94
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.90 E-value=1.5e+02 Score=20.93 Aligned_cols=12 Identities=17% Similarity=0.149 Sum_probs=5.2
Q ss_pred hhHHHHHHHHHh
Q 026674 127 KELRMIELRNQS 138 (235)
Q Consensus 127 ~e~~L~elR~ql 138 (235)
++..|+++-.++
T Consensus 38 kd~~I~eLEk~L 49 (72)
T 3nmd_A 38 RDALIDELELEL 49 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 95
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=29.81 E-value=58 Score=21.74 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHH
Q 026674 115 RETLQIARDNLDKELRMIELRNQ 137 (235)
Q Consensus 115 ~~N~~LAe~NL~~e~~L~elR~q 137 (235)
.....|...|-.+..++..|+.+
T Consensus 29 ~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 29 EKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444443
No 96
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=29.57 E-value=3e+02 Score=24.37 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 026674 143 TTELAAAQEKLHDLERQKEQLLKLY 167 (235)
Q Consensus 143 ~~el~~L~e~~~ek~~q~~~l~~~~ 167 (235)
+..++.++..|+....+|+....+|
T Consensus 146 i~~~ke~kK~Fek~~~~Yd~~l~Ky 170 (407)
T 4h8s_A 146 LTEVSTLKDLFGLASNEHDLSMAKY 170 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777655544
No 97
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.37 E-value=1.6e+02 Score=20.85 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHh
Q 026674 171 SLLKRIQEAMNKTEEESENLHRQLL 195 (235)
Q Consensus 171 aL~~~Lq~a~~eaEeeSE~Lae~FL 195 (235)
.-+..|.....+++.+-+.+.++|.
T Consensus 56 ~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 56 EQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777774
No 98
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=28.30 E-value=1.6e+02 Score=21.01 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 107 NNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 107 ~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
+..+.+.+.+|+.|-+..-.++.+|..+|.+.
T Consensus 26 R~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN 57 (79)
T 2zxx_A 26 RKALYEALKENEKLHKEIEQKDSEIARLRKEN 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666777777766666666666666543
No 99
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=28.25 E-value=2e+02 Score=22.18 Aligned_cols=18 Identities=44% Similarity=0.468 Sum_probs=12.9
Q ss_pred hHHhccCCHHHHHHHhcC
Q 026674 72 IALLKDKSVDELRKLLAD 89 (235)
Q Consensus 72 f~~L~~LS~~EL~eLL~d 89 (235)
..+|.+||.+||.+-|.+
T Consensus 8 a~ELR~~s~eEL~~~L~e 25 (124)
T 3iz5_c 8 AGELWNKSKDDLTKQLAE 25 (124)
T ss_dssp HHHHHTSCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHH
Confidence 347888888888776644
No 100
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=28.14 E-value=2.3e+02 Score=26.74 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026674 145 ELAAAQEKLHDLERQKE 161 (235)
Q Consensus 145 el~~L~e~~~ek~~q~~ 161 (235)
+++.++++..+++.+++
T Consensus 86 ~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 86 EKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 101
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.07 E-value=2.5e+02 Score=23.13 Aligned_cols=23 Identities=13% Similarity=0.426 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 026674 171 SLLKRIQEAMNKTEEESENLHRQ 193 (235)
Q Consensus 171 aL~~~Lq~a~~eaEeeSE~Lae~ 193 (235)
.....|+..+.++|..-|.|...
T Consensus 102 ~~~~~l~~~ireLEq~NDdlEr~ 124 (189)
T 2v71_A 102 AIKEQLHKYVRELEQANDDLERA 124 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Confidence 34455666666666666655443
No 102
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=27.88 E-value=2.4e+02 Score=22.87 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHhHHHHHHHH
Q 026674 146 LAAAQEKLHDLERQKEQLLKLYSPASL-LKRIQEAMNKTEEESENLH 191 (235)
Q Consensus 146 l~~L~e~~~ek~~q~~~l~~~~Sp~aL-~~~Lq~a~~eaEeeSE~La 191 (235)
+..++.+...+..+++.+..+++-... ...|+..+...|.++..+.
T Consensus 92 ~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 92 IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444444433332222211 2334445555554444443
No 103
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=27.59 E-value=3.3e+02 Score=24.33 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026674 200 DIGAFVQKYKKLRTTYHRRALVHLSAK 226 (235)
Q Consensus 200 dvd~FL~qF~e~RklyH~Rr~K~~a~~ 226 (235)
.+.+|+..|+..++.-..|++.+.++.
T Consensus 383 ~~~~F~~~f~~a~~en~~~~e~~~~~e 409 (411)
T 1ux5_A 383 KFADFINEYKKAQAQNLAAEEEERLYI 409 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 377899999999999999988887765
No 104
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.57 E-value=2.6e+02 Score=25.77 Aligned_cols=17 Identities=6% Similarity=0.417 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026674 145 ELAAAQEKLHDLERQKE 161 (235)
Q Consensus 145 el~~L~e~~~ek~~q~~ 161 (235)
+++.++++..+++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 84 RIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 105
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=27.48 E-value=2.2e+02 Score=22.17 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=14.0
Q ss_pred HHHHHHHhcCHHHHHHHHHhc
Q 026674 80 VDELRKLLADKDAYRQFLLSI 100 (235)
Q Consensus 80 ~~EL~eLL~d~d~l~~~v~~l 100 (235)
..+|.+.+.+.+.+..|...-
T Consensus 13 A~eL~~aI~eseeyk~yk~A~ 33 (151)
T 2pih_A 13 ARNLAKMISETEEVDFFKRAE 33 (151)
T ss_dssp HHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHH
Confidence 457777777766677776543
No 106
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=27.34 E-value=3.9e+02 Score=25.06 Aligned_cols=18 Identities=28% Similarity=0.132 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026674 144 TELAAAQEKLHDLERQKE 161 (235)
Q Consensus 144 ~el~~L~e~~~ek~~q~~ 161 (235)
++++.++++..+++.+++
T Consensus 130 ~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 130 KQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555444
No 107
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=27.32 E-value=2.9e+02 Score=23.46 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=27.2
Q ss_pred cCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 88 ADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 88 ~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
.+++.+..|+..- +..++.....+....+++-.++-+...+|++.|.++
T Consensus 160 asde~Ik~yLa~R--~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~ 208 (228)
T 3q0x_A 160 GNDSVVKQFLAFR--LSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQL 208 (228)
T ss_dssp CCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777642 333344444445555555445555556666666544
No 108
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=26.92 E-value=1.7e+02 Score=20.83 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=9.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHh
Q 026674 117 TLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 117 N~~LAe~NL~~e~~L~elR~ql 138 (235)
...+-..|-.++.+|..+..++
T Consensus 15 lq~~E~rN~~Le~~v~~le~~L 36 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSL 36 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 3333334444444444444433
No 109
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=26.90 E-value=60 Score=26.66 Aligned_cols=49 Identities=18% Similarity=0.311 Sum_probs=31.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhHHH------HHHHHHHHhc-CCCCHHHHHHHHH
Q 026674 161 EQLLKLYSPASLLKRIQEAMNKTEEE------SENLHRQLLD-RELDIGAFVQKYK 209 (235)
Q Consensus 161 ~~l~~~~Sp~aL~~~Lq~a~~eaEee------SE~Lae~FL~-Geidvd~FL~qF~ 209 (235)
..++...+++.|.+.|...-.....+ .|.+-+.+++ |+--+.+|+..|-
T Consensus 76 GKLmR~~D~e~I~~al~~~~~~~~~~~~~~h~lE~wRdrLi~~gd~al~e~~~~~P 131 (176)
T 2p0t_A 76 GKLMRDQDQEAILVLLDQLDASTRQYNERFHNLERWRDRLIAGDDADLEKFVIEYP 131 (176)
T ss_dssp HHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHST
T ss_pred HHHHhcCCHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHCc
Confidence 36788889999888776444333333 3444445564 4545888998883
No 110
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.74 E-value=95 Score=21.64 Aligned_cols=20 Identities=5% Similarity=0.150 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026674 103 VKIQNNIRDELHRETLQIAR 122 (235)
Q Consensus 103 vq~l~~~~e~l~~~N~~LAe 122 (235)
++.+......+..++..|.+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333
No 111
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=26.49 E-value=2.2e+02 Score=22.62 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=11.4
Q ss_pred hhHHhccCCHHHHHHHhcC
Q 026674 71 IIALLKDKSVDELRKLLAD 89 (235)
Q Consensus 71 ~f~~L~~LS~~EL~eLL~d 89 (235)
-|..+++...+-++.|.+.
T Consensus 36 Y~~q~~~~a~~~v~ql~~s 54 (165)
T 1gs9_A 36 YLRWVQTLSEQVQEELLSS 54 (165)
T ss_dssp HHHHHHHCCHHHHHHHHSS
T ss_pred HHHHHHHhHHHHHHHHHhH
Confidence 3456666666666666554
No 112
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.27 E-value=2.1e+02 Score=21.64 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=17.1
Q ss_pred HHHHHHHHHhHHHHHHHHHH---HhcCCCCHHHHHHHHHH
Q 026674 174 KRIQEAMNKTEEESENLHRQ---LLDRELDIGAFVQKYKK 210 (235)
Q Consensus 174 ~~Lq~a~~eaEeeSE~Lae~---FL~Geidvd~FL~qF~e 210 (235)
..|..++.++-.+....... +++-++.+|.=|..|++
T Consensus 87 ~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 87 GSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433332 34445555555666643
No 113
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=26.23 E-value=2.4e+02 Score=22.27 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHH
Q 026674 113 LHRETLQIARDNLDKELRMIELR 135 (235)
Q Consensus 113 l~~~N~~LAe~NL~~e~~L~elR 135 (235)
+-.....|++.|=.++.++++.+
T Consensus 77 veeA~~~L~eYn~rL~~E~~dR~ 99 (152)
T 4fla_A 77 VDEACLLLAEYNGRLAAELEDRR 99 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554444
No 114
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=25.98 E-value=86 Score=23.11 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=23.2
Q ss_pred HHhccCCHHHHHHHhcCHHHHHHHHHhc
Q 026674 73 ALLKDKSVDELRKLLADKDAYRQFLLSI 100 (235)
Q Consensus 73 ~~L~~LS~~EL~eLL~d~d~l~~~v~~l 100 (235)
+=|-.+...||-.||+|++.|...|.+-
T Consensus 47 GMLLEmd~~ElL~LLes~e~L~~kV~EA 74 (92)
T 1ifw_A 47 GMILDLPPQEVFPLLESDELFEQHYKEA 74 (92)
T ss_dssp HHHTTSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhHhcCCHHHHHHHHcCHHHHHHHHHHH
Confidence 3355699999999999999999888753
No 115
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=25.98 E-value=1.9e+02 Score=21.04 Aligned_cols=9 Identities=11% Similarity=0.324 Sum_probs=3.6
Q ss_pred CHHHHHHHH
Q 026674 200 DIGAFVQKY 208 (235)
Q Consensus 200 dvd~FL~qF 208 (235)
-+|.-|..|
T Consensus 76 ~Le~EIatY 84 (95)
T 3mov_A 76 ALDMEISAY 84 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333334444
No 116
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=25.88 E-value=1.1e+02 Score=26.58 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=37.3
Q ss_pred cCCHHHHHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026674 77 DKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKE 128 (235)
Q Consensus 77 ~LS~~EL~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e 128 (235)
..+.+.|+.|+.....+.+|... ++.++..+++++.....||.-+|...
T Consensus 160 ~i~~~~L~~Ll~~~k~L~~~~~k---v~~vr~~leelLddDeDm~~myLT~k 208 (261)
T 3rkg_A 160 EVNRLKLRHLLIKSKDLTLFYQK---TLLIRDLLDELLENDDDLANMYLTVK 208 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTCHHHHHHTCCSSC
T ss_pred cCCHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHcCHHHHHHhhccCC
Confidence 56677888877655567777654 56667789999999999999888765
No 117
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=25.86 E-value=91 Score=20.56 Aligned_cols=23 Identities=13% Similarity=0.253 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHH
Q 026674 111 DELHRETLQIARDNLDKELRMIE 133 (235)
Q Consensus 111 e~l~~~N~~LAe~NL~~e~~L~e 133 (235)
+.+....+.|.++|-+++.++..
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~ 52 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNE 52 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444433333
No 118
>1wzd_A Heme oxygenase; electron-transfer, artificial metalloprotein; HET: YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1 PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A* 3i8r_A* 3moo_A* 1wnw_A* 1wnx_A* 1wnv_A*
Probab=25.80 E-value=74 Score=26.08 Aligned_cols=49 Identities=16% Similarity=0.302 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 026674 170 ASLLKRIQEAMNKTEEESE--NLHRQLLDRELDIGAFVQKYKKLRTTYHRRALV 221 (235)
Q Consensus 170 ~aL~~~Lq~a~~eaEeeSE--~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K 221 (235)
..+..+|+.+.+++-+..| .++..|+.|.++.+.|++= .+..||.-+.-
T Consensus 6 ~~l~~~Lr~~T~~~H~~~e~~~~v~~l~~g~~~~~~Y~~~---L~~~y~vy~~l 56 (215)
T 1wzd_A 6 AGLAVELKQSTAQAHEKAEHSTFMSDLLKGRLGVAEFTRL---QEQAWLFYTAL 56 (215)
T ss_dssp -CHHHHHHHHTHHHHHHHHTCHHHHHHHTTCSCHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHH
Confidence 4578899999999999999 7889999999998877642 34445544433
No 119
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=25.68 E-value=1e+02 Score=20.77 Aligned_cols=6 Identities=17% Similarity=0.462 Sum_probs=2.3
Q ss_pred HHHHHH
Q 026674 130 RMIELR 135 (235)
Q Consensus 130 ~L~elR 135 (235)
++..||
T Consensus 52 ev~~Lr 57 (63)
T 2dgc_A 52 EVARLK 57 (63)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 120
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=25.53 E-value=95 Score=21.89 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 026674 102 QVKIQNNIRDELHRETLQIARDNLD 126 (235)
Q Consensus 102 ~vq~l~~~~e~l~~~N~~LAe~NL~ 126 (235)
.|+.+......+..+++.|.++|..
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~ 72 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRH 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 121
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=25.46 E-value=4.3e+02 Score=24.89 Aligned_cols=17 Identities=29% Similarity=0.517 Sum_probs=13.1
Q ss_pred ccCCHHHHHHHhcCHHH
Q 026674 76 KDKSVDELRKLLADKDA 92 (235)
Q Consensus 76 ~~LS~~EL~eLL~d~d~ 92 (235)
..||.+|+++++.+...
T Consensus 505 ~~ls~~ei~~~~~~~~~ 521 (605)
T 4b9q_A 505 SGLNEDEIQKMVRDAEA 521 (605)
T ss_dssp CSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhh
Confidence 36889999988877654
No 122
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=25.36 E-value=2.3e+02 Score=21.63 Aligned_cols=18 Identities=11% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 026674 177 QEAMNKTEEESENLHRQL 194 (235)
Q Consensus 177 q~a~~eaEeeSE~Lae~F 194 (235)
+..+.++|....+..++|
T Consensus 91 q~~~~e~E~kAqa~Eerf 108 (120)
T 3i00_A 91 QRSLSEIERKAQANEQRY 108 (120)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556666666666666
No 123
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=25.26 E-value=87 Score=22.86 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=24.8
Q ss_pred hhhhHHhccCCHHHHHHHhcCHHHHHHHHHhc
Q 026674 69 AGIIALLKDKSVDELRKLLADKDAYRQFLLSI 100 (235)
Q Consensus 69 ~~~f~~L~~LS~~EL~eLL~d~d~l~~~v~~l 100 (235)
.-|-+-|-.++..||-.|++|++.|..-|.+-
T Consensus 41 ~KITGMLLEmd~~Ell~lle~~e~L~~kV~EA 72 (88)
T 3kuj_A 41 GKITGMLLEIDNSELLHMLESPESLRSKVDEA 72 (88)
T ss_dssp HHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred chhhhHhhcCCHHHHHHHHcCHHHHHHHHHHH
Confidence 44445566789999999999999998877653
No 124
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=25.05 E-value=1.2e+02 Score=18.34 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHH
Q 026674 113 LHRETLQIARDNLDKELRMIELRN 136 (235)
Q Consensus 113 l~~~N~~LAe~NL~~e~~L~elR~ 136 (235)
|....++|...|-.++.++..||.
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344555555555555566666654
No 125
>2ky4_A Phycobilisome linker polypeptide; NESG, PSI, structural genomics, protein structure initiative northeast structural genomics consortium; NMR {Nostoc SP}
Probab=24.90 E-value=49 Score=26.59 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHH
Q 026674 185 EESENLHRQLLDRELDIGAFVQKYKK 210 (235)
Q Consensus 185 eeSE~Lae~FL~Geidvd~FL~qF~e 210 (235)
+..-.++.+|.+|+|+|-+||+.--.
T Consensus 39 ~r~~~lESqLrnG~IsVReFVR~Lak 64 (149)
T 2ky4_A 39 NEFSGWESKLGNGEITVKEFIEGLGY 64 (149)
T ss_dssp HHSHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred cccccHHHHHHcCCccHHHHHHHHHc
Confidence 34456678899999999999987543
No 126
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=24.54 E-value=1.3e+02 Score=22.69 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 026674 183 TEEESENLHRQLLDRELDIGAFVQKYKK 210 (235)
Q Consensus 183 aEeeSE~Lae~FL~Geidvd~FL~qF~e 210 (235)
..+.-..|+...++|+|+.++|-.+-.+
T Consensus 27 v~~~Vr~LVq~Ll~~~i~~EeFt~~Lq~ 54 (105)
T 2h7b_A 27 IGERVRTLVLGLVNSTLTIEEFHSKLQE 54 (105)
T ss_dssp HHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3455677888999999999999876554
No 127
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=24.54 E-value=1.4e+02 Score=19.59 Aligned_cols=27 Identities=11% Similarity=0.062 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 026674 109 IRDELHRETLQIARDNLDKELRMIELR 135 (235)
Q Consensus 109 ~~e~l~~~N~~LAe~NL~~e~~L~elR 135 (235)
..+.|..+|..|....-.+..++..|+
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 128
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=24.34 E-value=2.4e+02 Score=21.57 Aligned_cols=8 Identities=50% Similarity=0.534 Sum_probs=3.5
Q ss_pred HHHHHHhc
Q 026674 81 DELRKLLA 88 (235)
Q Consensus 81 ~EL~eLL~ 88 (235)
.||+.|.-
T Consensus 39 ~ELeRLr~ 46 (115)
T 3vem_A 39 HELEKLRR 46 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 129
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.18 E-value=2.4e+02 Score=25.59 Aligned_cols=9 Identities=33% Similarity=0.372 Sum_probs=5.9
Q ss_pred HHHHHHhcC
Q 026674 189 NLHRQLLDR 197 (235)
Q Consensus 189 ~Lae~FL~G 197 (235)
.+++.+++|
T Consensus 131 ~lv~~~l~G 139 (403)
T 4etp_A 131 QLVQSSLDG 139 (403)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhCC
Confidence 366777766
No 130
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 2; PFAM00427 domain, linker protein, phycobiliprotein, photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Probab=24.14 E-value=49 Score=26.52 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHH
Q 026674 187 SENLHRQLLDRELDIGAFVQKYKK 210 (235)
Q Consensus 187 SE~Lae~FL~Geidvd~FL~qF~e 210 (235)
.-.++.+|.+|+|+|-+||+.--.
T Consensus 38 ~~~lESqLrnG~ItVReFVR~Lak 61 (148)
T 3nph_B 38 LTSAESLLRGREISVRDFVRAVAL 61 (148)
T ss_dssp CHHHHHHHHTTSSCHHHHHHHHHT
T ss_pred cccHHHHHhcCCccHHHHHHHHHc
Confidence 456788999999999999987543
No 131
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.11 E-value=2.6e+02 Score=25.54 Aligned_cols=9 Identities=33% Similarity=0.338 Sum_probs=5.0
Q ss_pred HHHHHHhcC
Q 026674 189 NLHRQLLDR 197 (235)
Q Consensus 189 ~Lae~FL~G 197 (235)
.|++.+++|
T Consensus 129 plv~~~l~G 137 (412)
T 3u06_A 129 PLIQSALDG 137 (412)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCC
Confidence 455566554
No 132
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=24.06 E-value=1.8e+02 Score=20.00 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHHHHHHH
Q 026674 183 TEEESENLHRQLLDRELDIGAFVQKYKKL-RTTYHRRAL 220 (235)
Q Consensus 183 aEeeSE~Lae~FL~Geidvd~FL~qF~e~-RklyH~Rr~ 220 (235)
.|.--..|.+-+..|.|+++.|+++.+.. |.-+-.|.+
T Consensus 18 ieDaiy~L~~aL~~g~I~l~~ylK~vR~LaReQF~~Ral 56 (65)
T 2f6m_A 18 LTDTIEALSRMLHRGTIPLDTFVKQGRELARQQFLVRWH 56 (65)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666678999999999986654 333333443
No 133
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=22.91 E-value=1.5e+02 Score=23.01 Aligned_cols=13 Identities=15% Similarity=0.560 Sum_probs=7.4
Q ss_pred CCHHHHHHHhcCH
Q 026674 78 KSVDELRKLLADK 90 (235)
Q Consensus 78 LS~~EL~eLL~d~ 90 (235)
-|.+|++.|+...
T Consensus 42 ~sleEI~~L~~~H 54 (129)
T 1wlx_A 42 HTIEEIEGLISAH 54 (129)
T ss_dssp CSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 3556666666555
No 134
>3t49_A SCIN-B, fibrinogen-binding protein; secreted, virulence, immune system; HET: GOL; 1.45A {Staphylococcus aureus subsp} PDB: 3t4a_G
Probab=22.90 E-value=2e+02 Score=20.14 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=19.0
Q ss_pred CHHHHHHHhcCHHHHHHHHHhcHHHHH
Q 026674 79 SVDELRKLLADKDAYRQFLLSIDQVKI 105 (235)
Q Consensus 79 S~~EL~eLL~d~d~l~~~v~~l~~vq~ 105 (235)
|.+||+.||++-+..+--..+|+.+..
T Consensus 5 ~a~eL~~Ll~~snvn~LA~~sLn~YyK 31 (73)
T 3t49_A 5 SAEELRTLLNKSNVYALAAGSLNPYYK 31 (73)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGSCHHHH
T ss_pred cHHHHHHHHHhccHHHHHhccccHHHH
Confidence 578999999988765544456665543
No 135
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=22.81 E-value=1e+02 Score=18.88 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHH
Q 026674 114 HRETLQIARDNLDKELRMIELRN 136 (235)
Q Consensus 114 ~~~N~~LAe~NL~~e~~L~elR~ 136 (235)
+.+|+.|-..--.+..+|..||.
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~ 28 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKK 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554444444444444444
No 136
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=22.13 E-value=3.5e+02 Score=22.72 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 026674 147 AAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQL 194 (235)
Q Consensus 147 ~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~F 194 (235)
..+..+|.+.+.+++.+-.. ...++..++|..+..+|+|...--+++
T Consensus 39 ~~VmkEW~eae~q~k~l~ka-dkk~~~~rFQ~~v~aLE~E~~~ErqqL 85 (211)
T 3umh_A 39 SQVMREWEEAERQAKNLPKA-DKKAVIQHFQEKVESLEQEAANERQQL 85 (211)
T ss_dssp HHHHHHHHHHHHTTSSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 45666677766666543222 366888999999999988877655554
No 137
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=21.93 E-value=90 Score=18.17 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026674 202 GAFVQKYKKLRTTYHRRALV 221 (235)
Q Consensus 202 d~FL~qF~e~RklyH~Rr~K 221 (235)
++|+++|-+.-++.. -|+|
T Consensus 11 eeflkkfeellklhe-erlk 29 (32)
T 1m3w_A 11 EEFLKKFEELLKLHE-ERLK 29 (32)
T ss_dssp HHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHH-HHHH
Confidence 679999998887744 4444
No 138
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=21.85 E-value=4.5e+02 Score=23.83 Aligned_cols=104 Identities=15% Similarity=0.227 Sum_probs=55.7
Q ss_pred HHHHHHHhcCH-----HHHHHHHHhcHHHHH---HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH---HHHHHHHHH
Q 026674 80 VDELRKLLADK-----DAYRQFLLSIDQVKI---QNNIRDELHRETLQIARDNLDKELRMIELRNQSK---IIRTTELAA 148 (235)
Q Consensus 80 ~~EL~eLL~d~-----d~l~~~v~~l~~vq~---l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~---~~~~~el~~ 148 (235)
.++|+.|+.++ ..|+.|+..+..+-. -...+..++..-..||..-=..-..|..+|..+- .....++..
T Consensus 28 l~~le~~~~~~~~gl~~~l~~ff~alq~la~~P~~~~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~ 107 (463)
T 2d4y_A 28 MSKIDNLLADKSSSLSGSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINN 107 (463)
T ss_dssp HHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777653 367777766554432 1124666666666666554455556666666541 123345666
Q ss_pred HHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHh
Q 026674 149 AQEKLHDLERQKEQLLK---LYSPASLLKRIQEAMNKT 183 (235)
Q Consensus 149 L~e~~~ek~~q~~~l~~---~~Sp~aL~~~Lq~a~~ea 183 (235)
+-++..++.++...+.. ...|..|+.+=...+.++
T Consensus 108 l~~qIa~LN~qI~~~~~~~~g~~~ndLlDqRD~ll~eL 145 (463)
T 2d4y_A 108 YAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSEL 145 (463)
T ss_dssp HHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCCCchHhHHHHHHHHHHH
Confidence 66666667666554422 345666666544444433
No 139
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=21.72 E-value=1.1e+02 Score=18.92 Aligned_cols=24 Identities=8% Similarity=0.393 Sum_probs=18.1
Q ss_pred CCHHHHHHHhcCHHHHHHHHHhcHH
Q 026674 78 KSVDELRKLLADKDAYRQFLLSIDQ 102 (235)
Q Consensus 78 LS~~EL~eLL~d~d~l~~~v~~l~~ 102 (235)
||.+|++.++.+++ |..|+..-..
T Consensus 1 LseEEk~~I~~S~~-F~~F~~rssk 24 (38)
T 3l9k_W 1 LSEEQKQMIILSEN-FQRFVVRAGR 24 (38)
T ss_dssp CCHHHHHHHHTSHH-HHHHHHHHHH
T ss_pred CCHHHHHHHhcCHH-HHHHHHHHHH
Confidence 68899999999887 5667765433
No 140
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=21.65 E-value=3.6e+02 Score=22.69 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=13.9
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 026674 162 QLLKLYSPASLLKRIQEAMN 181 (235)
Q Consensus 162 ~l~~~~Sp~aL~~~Lq~a~~ 181 (235)
.+...-+.+.+...|...+.
T Consensus 111 ~LL~a~sl~~l~~~L~~~l~ 130 (252)
T 3e98_A 111 DLLDATSLEDVVSTVEDSLR 130 (252)
T ss_dssp HHHHCCSHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHH
Confidence 46677788888887765443
No 141
>3nzt_A Glutamate--cysteine ligase; structural genomics, center for structural genomics of infec diseases, csgid, alpha and beta proteins; HET: AMP; 2.00A {Francisella tularensis subsp}
Probab=21.56 E-value=5.3e+02 Score=24.51 Aligned_cols=44 Identities=9% Similarity=0.273 Sum_probs=31.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 026674 163 LLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKK 210 (235)
Q Consensus 163 l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e 210 (235)
+...|++... +.|...+.++-++=.+|+.. ..+++|+||..|..
T Consensus 476 ~~~~~~~~~~-~~~~~~~~~S~~~q~~~E~~---d~~~f~~~l~~y~~ 519 (525)
T 3nzt_A 476 RSYELPAAIV-AKLKDQAGQSVAAEKELVAN---DKISLDEYINRYYK 519 (525)
T ss_dssp HHSCCCHHHH-HHHHHHHHHHHHHHHHHHHH---CCSCHHHHHHHHHH
T ss_pred HhCCCCHHHH-HHHHHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHH
Confidence 4567777765 66776666666666666654 67899999999974
No 142
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=21.41 E-value=1.4e+02 Score=17.91 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHH
Q 026674 115 RETLQIARDNLDKELRMIELRN 136 (235)
Q Consensus 115 ~~N~~LAe~NL~~e~~L~elR~ 136 (235)
...++|-..|-.++.++..||.
T Consensus 7 ~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 7 AKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444444455555555554
No 143
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.30A {Synechocystis SP} PDB: 2l06_A
Probab=21.32 E-value=74 Score=25.46 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=18.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Q 026674 188 ENLHRQLLDRELDIGAFVQKYKK 210 (235)
Q Consensus 188 E~Lae~FL~Geidvd~FL~qF~e 210 (235)
-.++.+|.+|+|+|-+||+.--.
T Consensus 50 ~~lESql~nG~ItVReFIR~Lak 72 (147)
T 3osj_A 50 SYLESQVRNGDISMKEFVRRLAK 72 (147)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHH
T ss_pred ccHHHHHHcCCccHHHHHHHHHc
Confidence 45678889999999999987544
No 144
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=21.26 E-value=2.8e+02 Score=21.32 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=12.1
Q ss_pred HHhccCCHHHHHHHhcC
Q 026674 73 ALLKDKSVDELRKLLAD 89 (235)
Q Consensus 73 ~~L~~LS~~EL~eLL~d 89 (235)
.+|.+||.+||.+-|.+
T Consensus 8 ~ELR~~s~eEL~~~L~e 24 (124)
T 4a17_U 8 FKLRTQTEEQLVGELGK 24 (124)
T ss_dssp HHHHHSCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 46778888888776654
No 145
>2vwa_A Putative uncharacterized protein PF13_0012; unknown function; HET: PTY; 2.5A {Plasmodium falciparum}
Probab=20.94 E-value=79 Score=23.42 Aligned_cols=31 Identities=10% Similarity=0.217 Sum_probs=26.8
Q ss_pred hccCCHHHHHHHhcCHHHHHHHHHhcHHHHH
Q 026674 75 LKDKSVDELRKLLADKDAYRQFLLSIDQVKI 105 (235)
Q Consensus 75 L~~LS~~EL~eLL~d~d~l~~~v~~l~~vq~ 105 (235)
..+||.++-+-+++|-|++..+|..|++-+.
T Consensus 39 F~~LSn~Qq~y~ind~dY~rkiVQ~L~E~rn 69 (101)
T 2vwa_A 39 FEHLSNDQKDSHVNNMEYMQKFVQGLQENRN 69 (101)
T ss_dssp HHHSCHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHhcCcHHHHHHhchHHHHHHHHHHHHhccc
Confidence 5689999999999999999999988876543
No 146
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=20.89 E-value=1.5e+02 Score=18.82 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHH
Q 026674 168 SPASLLKRIQEAMNKTEEESENLHRQL---LDRELDIGAFVQKYKKLRTT 214 (235)
Q Consensus 168 Sp~aL~~~Lq~a~~eaEeeSE~Lae~F---L~Geidvd~FL~qF~e~Rkl 214 (235)
+.+-+...|.....-.+++.+.+...+ -+|.|+.++|+.-+...+..
T Consensus 21 ~~~el~~~l~~~g~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~~~~~ 70 (78)
T 1k9u_A 21 SLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFISFCNANPGL 70 (78)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHCHHH
T ss_pred cHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHCchh
Confidence 344444444333222345556666655 25789999999887766543
No 147
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=20.80 E-value=2.9e+02 Score=21.17 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHH
Q 026674 115 RETLQIARDNLDKELRMIELRNQSKIIRTTELAA 148 (235)
Q Consensus 115 ~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~ 148 (235)
.++.+.|+.+|... .+++.++ ..++..+..
T Consensus 33 ka~AE~A~~~La~~---~~l~~~i-~er~~~i~~ 62 (119)
T 3etw_A 33 RAQADAARQALAQN---EQVYNEL-SQRAQRLQA 62 (119)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHH
Confidence 44555556666655 3455555 344444443
No 148
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Probab=20.76 E-value=1.7e+02 Score=21.08 Aligned_cols=50 Identities=12% Similarity=0.156 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHHHHH---hHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHH
Q 026674 166 LYSPASLLKRIQEAMNK---TEEESENLHRQL---LDRELDIGAFVQKYKKLRTTY 215 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a~~e---aEeeSE~Lae~F---L~Geidvd~FL~qF~e~Rkly 215 (235)
..+.+-|...|+..... .+++.+.|...+ -+|.|++++|+.-+...-+.+
T Consensus 40 ~Is~~EL~~~l~~~lg~~~~~~~ev~~li~~~D~d~dG~Idf~EF~~~~~~~~~~~ 95 (106)
T 2h2k_A 40 SLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGELAKEI 95 (106)
T ss_dssp EECHHHHHHHHHHHCTTTTTTCCCHHHHHHHHCTTCSSSEEHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHcCcCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHHh
Confidence 45677777777543221 135677777665 267899999998776554444
No 149
>3bjd_A Putative 3-oxoacyl-(acyl-carrier-protein) synthas; structural genomics, APC5632, 3-oxoacyl-(acyl-carrier-protei synthase, PSI-2; HET: MSE; 1.85A {Pseudomonas aeruginosa PAO1}
Probab=20.36 E-value=98 Score=27.32 Aligned_cols=62 Identities=8% Similarity=0.074 Sum_probs=45.6
Q ss_pred cCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 026674 166 LYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKTH 228 (235)
Q Consensus 166 ~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~a~~~~ 228 (235)
.++++.+.++|...+.+......-+...+.+|+++.+.|.. |...+-.|+..=.+.+|+-.+
T Consensus 104 ~~s~~~F~~~L~~~~~~~~~~~HPf~~~l~~G~Ls~e~~r~-yl~Qdy~yl~~f~~~lA~~~a 165 (332)
T 3bjd_A 104 ALSEEDFQKRLEQEIAAQSRERHPMSQYVFSGSASRAQLQV-FLRHQWFRTFRLYRDAADLLV 165 (332)
T ss_dssp CCCHHHHHHHHHHHHHCC--CCCHHHHHHHHTCCCHHHHHH-HHHHHHHHHTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhcccccCcHHHHHhCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHc
Confidence 56899999999988887333333567777899999998855 999999888766665555443
No 150
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.12 E-value=2e+02 Score=19.08 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674 110 RDELHRETLQIARDNLDKELRMIELRNQS 138 (235)
Q Consensus 110 ~e~l~~~N~~LAe~NL~~e~~L~elR~ql 138 (235)
.+.|......|...|..+..+|..|+.++
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555555444
Done!