Query 026675
Match_columns 235
No_of_seqs 125 out of 1697
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 11:09:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.7 6.2E-17 1.3E-21 151.8 9.2 156 33-188 139-296 (968)
2 KOG0617 Ras suppressor protein 99.7 1.5E-18 3.3E-23 126.5 -2.9 160 34-201 33-195 (264)
3 PLN00113 leucine-rich repeat r 99.7 2.2E-16 4.7E-21 148.2 9.6 158 32-189 162-321 (968)
4 PLN03210 Resistant to P. syrin 99.7 6.5E-16 1.4E-20 146.5 12.6 179 3-187 493-715 (1153)
5 PLN03210 Resistant to P. syrin 99.6 1.1E-14 2.3E-19 138.3 11.5 163 25-190 625-839 (1153)
6 KOG0617 Ras suppressor protein 99.5 1.5E-16 3.3E-21 116.1 -3.2 156 47-206 24-180 (264)
7 KOG0444 Cytoskeletal regulator 99.5 3.6E-15 7.7E-20 128.0 2.8 188 34-229 78-297 (1255)
8 KOG0444 Cytoskeletal regulator 99.5 3.5E-15 7.6E-20 128.0 -1.5 155 31-189 219-375 (1255)
9 KOG0532 Leucine-rich repeat (L 99.4 3.8E-14 8.2E-19 120.2 -0.6 170 36-218 100-270 (722)
10 KOG0472 Leucine-rich repeat pr 99.4 3.7E-14 7.9E-19 115.9 -1.7 146 39-187 393-539 (565)
11 KOG0472 Leucine-rich repeat pr 99.4 2.6E-14 5.7E-19 116.7 -2.7 145 38-187 141-308 (565)
12 KOG4194 Membrane glycoprotein 99.3 1.7E-12 3.7E-17 110.8 3.9 51 39-90 83-134 (873)
13 KOG4194 Membrane glycoprotein 99.3 9E-13 2E-17 112.4 1.9 143 41-187 204-352 (873)
14 KOG0618 Serine/threonine phosp 99.3 9.1E-13 2E-17 117.3 0.1 174 34-219 287-487 (1081)
15 cd00116 LRR_RI Leucine-rich re 99.2 6.8E-12 1.5E-16 103.4 2.2 138 50-187 74-232 (319)
16 cd00116 LRR_RI Leucine-rich re 99.2 4.6E-12 1E-16 104.4 1.2 154 34-187 23-204 (319)
17 KOG0532 Leucine-rich repeat (L 99.1 3.6E-12 7.9E-17 108.3 -2.4 164 33-206 74-238 (722)
18 PRK15370 E3 ubiquitin-protein 99.1 1.9E-10 4E-15 104.2 6.9 139 35-187 221-378 (754)
19 KOG4237 Extracellular matrix p 99.1 1.2E-11 2.6E-16 101.1 -1.5 66 34-99 67-133 (498)
20 PRK15370 E3 ubiquitin-protein 99.0 4.9E-10 1.1E-14 101.6 7.0 140 34-187 199-357 (754)
21 PF14580 LRR_9: Leucine-rich r 99.0 3.8E-10 8.3E-15 84.6 5.3 124 55-183 17-147 (175)
22 KOG0618 Serine/threonine phosp 99.0 5.3E-11 1.1E-15 106.3 -1.4 130 55-188 357-488 (1081)
23 PRK15387 E3 ubiquitin-protein 98.9 6E-09 1.3E-13 94.4 9.1 139 33-187 241-413 (788)
24 COG4886 Leucine-rich repeat (L 98.9 9.3E-10 2E-14 93.6 3.4 150 34-187 116-266 (394)
25 KOG3207 Beta-tubulin folding c 98.8 7.2E-10 1.6E-14 91.8 1.0 95 104-204 221-325 (505)
26 PRK15387 E3 ubiquitin-protein 98.8 9.3E-09 2E-13 93.2 7.4 76 105-188 382-457 (788)
27 KOG4658 Apoptotic ATPase [Sign 98.8 2.6E-09 5.5E-14 98.4 2.6 149 37-186 526-678 (889)
28 KOG3207 Beta-tubulin folding c 98.8 1E-09 2.2E-14 91.0 -0.2 179 34-218 121-311 (505)
29 COG4886 Leucine-rich repeat (L 98.8 4.5E-09 9.8E-14 89.4 3.6 149 35-188 141-289 (394)
30 PF14580 LRR_9: Leucine-rich r 98.8 6E-09 1.3E-13 78.1 3.7 112 70-187 9-124 (175)
31 PLN03150 hypothetical protein; 98.7 3.1E-08 6.7E-13 88.9 7.7 106 83-188 420-527 (623)
32 KOG1259 Nischarin, modulator o 98.7 2.9E-09 6.2E-14 84.8 -0.1 128 31-163 281-410 (490)
33 PLN03150 hypothetical protein; 98.7 7.8E-08 1.7E-12 86.4 8.1 81 107-187 420-501 (623)
34 KOG1259 Nischarin, modulator o 98.6 6.9E-09 1.5E-13 82.7 0.1 103 80-187 283-385 (490)
35 KOG2120 SCF ubiquitin ligase, 98.6 2.8E-09 6.2E-14 84.6 -2.7 178 36-221 187-376 (419)
36 KOG4658 Apoptotic ATPase [Sign 98.5 3.3E-08 7.2E-13 91.2 1.0 126 35-161 546-677 (889)
37 PF13855 LRR_8: Leucine rich r 98.4 4.8E-07 1E-11 55.8 4.6 57 58-116 2-60 (61)
38 PF13855 LRR_8: Leucine rich r 98.4 3.5E-07 7.5E-12 56.4 3.4 14 148-161 45-58 (61)
39 KOG1909 Ran GTPase-activating 98.3 9.1E-08 2E-12 77.5 -0.0 41 147-187 208-252 (382)
40 KOG4237 Extracellular matrix p 98.3 1E-07 2.2E-12 78.5 0.0 143 40-187 52-199 (498)
41 KOG1859 Leucine-rich repeat pr 98.3 1.5E-08 3.2E-13 89.2 -5.2 162 50-223 102-294 (1096)
42 KOG1909 Ran GTPase-activating 98.3 8.5E-08 1.9E-12 77.6 -0.8 179 50-233 113-325 (382)
43 PRK15386 type III secretion pr 98.3 2E-06 4.3E-11 72.5 7.0 32 152-186 156-187 (426)
44 KOG2120 SCF ubiquitin ligase, 98.2 3E-07 6.5E-12 73.3 0.1 151 36-188 212-375 (419)
45 PRK15386 type III secretion pr 98.2 4.6E-06 1E-10 70.3 6.7 115 34-162 52-187 (426)
46 KOG3665 ZYG-1-like serine/thre 98.1 1.7E-06 3.6E-11 78.3 2.8 131 56-188 121-262 (699)
47 KOG0531 Protein phosphatase 1, 98.0 2.9E-06 6.4E-11 72.8 1.5 103 32-138 93-196 (414)
48 PF12799 LRR_4: Leucine Rich r 97.9 8.4E-06 1.8E-10 46.6 2.8 31 107-137 3-33 (44)
49 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.4E-10 45.5 3.4 34 153-187 2-35 (44)
50 KOG1859 Leucine-rich repeat pr 97.9 1.8E-07 3.9E-12 82.6 -7.0 113 70-187 176-290 (1096)
51 KOG4579 Leucine-rich repeat (L 97.9 1.7E-06 3.6E-11 61.5 -0.9 105 39-146 32-140 (177)
52 KOG3665 ZYG-1-like serine/thre 97.9 8.2E-06 1.8E-10 73.9 3.2 149 81-233 122-275 (699)
53 KOG0531 Protein phosphatase 1, 97.9 2.5E-06 5.5E-11 73.2 -0.2 106 77-187 91-197 (414)
54 KOG4579 Leucine-rich repeat (L 97.7 1.9E-06 4.1E-11 61.3 -2.8 88 35-124 54-142 (177)
55 KOG1947 Leucine rich repeat pr 97.2 0.00011 2.4E-09 63.8 0.9 129 55-183 186-328 (482)
56 KOG1644 U2-associated snRNP A' 97.2 0.00088 1.9E-08 50.9 5.3 100 82-185 43-149 (233)
57 KOG1644 U2-associated snRNP A' 97.0 0.00076 1.6E-08 51.3 3.7 94 40-136 48-148 (233)
58 KOG2123 Uncharacterized conser 96.9 5.7E-05 1.2E-09 60.1 -3.1 97 34-134 19-123 (388)
59 KOG2739 Leucine-rich acidic nu 96.9 0.00078 1.7E-08 53.0 2.7 106 55-162 41-153 (260)
60 KOG4341 F-box protein containi 96.8 0.00026 5.6E-09 59.2 -0.2 134 80-220 293-438 (483)
61 KOG2123 Uncharacterized conser 96.8 0.00017 3.7E-09 57.4 -1.7 99 56-158 18-123 (388)
62 KOG1947 Leucine rich repeat pr 96.5 0.0015 3.2E-08 56.8 2.3 126 33-158 187-327 (482)
63 KOG4341 F-box protein containi 96.4 0.00074 1.6E-08 56.6 -0.3 136 54-189 291-439 (483)
64 KOG2982 Uncharacterized conser 96.1 0.0019 4.1E-08 52.1 0.8 18 172-189 245-262 (418)
65 KOG2739 Leucine-rich acidic nu 96.0 0.0049 1.1E-07 48.6 2.6 102 80-185 42-152 (260)
66 COG5238 RNA1 Ran GTPase-activa 96.0 0.0063 1.4E-07 48.6 3.1 189 37-231 33-265 (388)
67 PF13306 LRR_5: Leucine rich r 95.9 0.039 8.5E-07 38.8 6.8 102 52-161 7-112 (129)
68 COG5238 RNA1 Ran GTPase-activa 95.8 0.0076 1.6E-07 48.2 2.9 58 105-162 185-252 (388)
69 KOG2982 Uncharacterized conser 95.5 0.0099 2.1E-07 48.1 2.3 83 32-115 69-156 (418)
70 KOG3864 Uncharacterized conser 95.4 0.0035 7.6E-08 47.7 -0.5 81 106-186 102-186 (221)
71 PF00560 LRR_1: Leucine Rich R 95.4 0.0082 1.8E-07 28.5 1.0 7 84-90 3-9 (22)
72 PF13306 LRR_5: Leucine rich r 94.5 0.13 2.8E-06 36.1 5.8 110 36-154 14-128 (129)
73 PF13504 LRR_7: Leucine rich r 94.2 0.036 7.7E-07 24.5 1.5 14 106-119 2-15 (17)
74 smart00370 LRR Leucine-rich re 91.3 0.2 4.4E-06 24.5 2.0 19 105-123 2-20 (26)
75 smart00369 LRR_TYP Leucine-ric 91.3 0.2 4.4E-06 24.5 2.0 19 105-123 2-20 (26)
76 KOG3864 Uncharacterized conser 89.6 0.1 2.3E-06 39.9 0.0 61 129-189 102-164 (221)
77 KOG0473 Leucine-rich repeat pr 86.4 0.015 3.3E-07 45.4 -6.2 82 54-137 39-120 (326)
78 KOG0473 Leucine-rich repeat pr 83.9 0.024 5.3E-07 44.4 -6.1 81 80-162 41-121 (326)
79 smart00367 LRR_CC Leucine-rich 83.4 0.9 2E-05 22.2 1.5 15 152-166 2-16 (26)
80 PF13516 LRR_6: Leucine Rich r 78.3 1.2 2.7E-05 21.2 0.9 14 105-118 2-15 (24)
81 smart00364 LRR_BAC Leucine-ric 75.9 1.7 3.7E-05 21.5 1.0 17 106-122 3-19 (26)
82 KOG4308 LRR-containing protein 69.8 0.086 1.9E-06 46.2 -7.5 18 51-68 109-126 (478)
83 KOG4308 LRR-containing protein 65.6 0.23 5.1E-06 43.5 -5.7 170 59-232 89-286 (478)
84 smart00365 LRR_SD22 Leucine-ri 60.9 7 0.00015 19.3 1.4 14 105-118 2-15 (26)
85 smart00368 LRR_RI Leucine rich 57.9 7.8 0.00017 19.2 1.4 14 105-118 2-15 (28)
86 KOG3763 mRNA export factor TAP 35.7 21 0.00046 31.9 1.4 13 103-115 242-254 (585)
87 KOG3763 mRNA export factor TAP 28.7 21 0.00045 31.9 0.2 63 55-118 216-283 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.69 E-value=6.2e-17 Score=151.83 Aligned_cols=156 Identities=21% Similarity=0.171 Sum_probs=103.3
Q ss_pred ccchhhhhhcccCcc-ccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEE
Q 026675 33 FPDIVQVLWDGIDTR-ELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIH 111 (235)
Q Consensus 33 ~~~l~~~~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 111 (235)
.+.++.++++++.+. .+|..+.++++|++|++++|.....+|..+..+++|++|++++|.....+|..++.+++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 344555555555554 4566677777777777777665556666677777777777777665556666677777777777
Q ss_pred ecCcccc-CcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeecccccc
Q 026675 112 LEGTAIR-GLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCIL 188 (235)
Q Consensus 112 l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 188 (235)
+++|.+. .+|..+..+++|++|++++|.....+|..++.+++|+.|++++|.....+|..+..+++|++|++++|..
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 7777666 5666677777777777776655555666666677777777766644445566666666666666666653
No 2
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.5e-18 Score=126.45 Aligned_cols=160 Identities=20% Similarity=0.235 Sum_probs=141.2
Q ss_pred cchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEec
Q 026675 34 PDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLE 113 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 113 (235)
.+++.+.++.+-+..+|+.+..+.+|+.|++.+| .++++|..++.+++|+.|+++- +.+..+|..++.++-|+.||+.
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhcc
Confidence 4567788899999999999999999999999994 5889999999999999999998 6788899999999999999999
Q ss_pred Ccccc--CcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccccccc
Q 026675 114 GTAIR--GLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILINV 191 (235)
Q Consensus 114 ~~~~~--~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 191 (235)
+|++. .+|..+..++.|+.|++++ +..+.+|..++.+++|+.|.++.| .+-.+|..++.++.|+.|++.+|+
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqgnr---- 184 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGNR---- 184 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhcccce----
Confidence 99887 6899999999999999998 688889988999999999999998 566789999999999999999999
Q ss_pred cccCCC-Cccc
Q 026675 192 VRQKDS-DSWK 201 (235)
Q Consensus 192 ~~~~~~-~~~l 201 (235)
++.+|. ++.+
T Consensus 185 l~vlppel~~l 195 (264)
T KOG0617|consen 185 LTVLPPELANL 195 (264)
T ss_pred eeecChhhhhh
Confidence 555443 5444
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.66 E-value=2.2e-16 Score=148.19 Aligned_cols=158 Identities=21% Similarity=0.171 Sum_probs=124.8
Q ss_pred cccchhhhhhcccCcc-ccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceE
Q 026675 32 KFPDIVQVLWDGIDTR-ELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEI 110 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 110 (235)
.+++++.++++++.+. .+|..+.++++|++|++++|.....+|..+..+++|++|++++|.....+|..++.+++|++|
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 4456777888888764 677788899999999999887666778888888889999998876666788888888888888
Q ss_pred EecCcccc-CcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccccc
Q 026675 111 HLEGTAIR-GLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILI 189 (235)
Q Consensus 111 ~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 189 (235)
++++|.++ .+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|...
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 88888877 67778888888888888886655667777788888888888887555567777777788888888777643
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.66 E-value=6.5e-16 Score=146.53 Aligned_cols=179 Identities=26% Similarity=0.351 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCCCCCccCcccchhhh---------hhcccCccc--c-chhhhhccC------------
Q 026675 3 CYKKWGRQIVRRQSPQEPGNCSRLWEEADKFPDIVQV---------LWDGIDTRE--L-SFAIELLFR------------ 58 (235)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~---------~l~~~~~~~--~-~~~l~~l~~------------ 58 (235)
++++||+++++++. .++++..++|+..+....+... .+.-..+.+ + +.+|.++++
T Consensus 493 Ll~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~ 571 (1153)
T PLN03210 493 LLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWD 571 (1153)
T ss_pred HHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccc
Confidence 57999999999997 6789999999864322211110 000000000 0 112223333
Q ss_pred -------------------CcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCcc-cc
Q 026675 59 -------------------LVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTA-IR 118 (235)
Q Consensus 59 -------------------L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~ 118 (235)
|+.|++.++ .++.+|..+ .+.+|+.|++.+ +.+..++..+..+++|+.|+++++. +.
T Consensus 572 ~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~-s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~ 648 (1153)
T PLN03210 572 QKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQG-SKLEKLWDGVHSLTGLRNIDLRGSKNLK 648 (1153)
T ss_pred ccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcC-ccccccccccccCCCCCEEECCCCCCcC
Confidence 333333331 233344433 245566666655 3345555555555566666665542 33
Q ss_pred CcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 119 GLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 119 ~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
.+| .+..+++|+.|++.+|..+..+|..+.++++|+.|++++|..++.+|..+ ++++|+.|++++|.
T Consensus 649 ~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 649 EIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred cCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 444 24455555666665555555555555555556666665555555555433 45555555555554
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.58 E-value=1.1e-14 Score=138.34 Aligned_cols=163 Identities=26% Similarity=0.453 Sum_probs=99.0
Q ss_pred CCCCccCcccchhhhhhcccC-ccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCC
Q 026675 25 RLWEEADKFPDIVQVLWDGID-TRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSG 103 (235)
Q Consensus 25 ~l~~~~~~~~~l~~~~l~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~ 103 (235)
.+|.....+++++.++++++. +.++| .+..+++|+.|++++|..+..+|..+..+++|+.|++++|..++.+|..+ .
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 345544455556666665433 33444 34556666666666666566666656666666666666665555555433 3
Q ss_pred CCCCceEEe---------------------cCccccCcchhh------------------------------hcCCCCcE
Q 026675 104 KDQLLEIHL---------------------EGTAIRGLPASI------------------------------ELLSGNVL 132 (235)
Q Consensus 104 l~~L~~L~l---------------------~~~~~~~l~~~~------------------------------~~l~~L~~ 132 (235)
+++|+.|++ .++.+..+|..+ ...++|+.
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 444444444 444433333221 01246677
Q ss_pred EeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeecccccccc
Q 026675 133 LNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILIN 190 (235)
Q Consensus 133 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 190 (235)
|++++|+.+..+|..++++++|+.|++++|..++.+|..+ .+++|+.|++++|..++
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence 7777777777788778888888888888887777777655 67778888888776554
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.5e-16 Score=116.09 Aligned_cols=156 Identities=22% Similarity=0.271 Sum_probs=130.4
Q ss_pred cccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCccccCcchhhhc
Q 026675 47 RELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPASIEL 126 (235)
Q Consensus 47 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~ 126 (235)
.++| .+..+.+++.|.+++ ++++.+|+.+..+++|++|+++. +.++++|..++++++|+.|+++-|++..+|.+++.
T Consensus 24 ~~~~-gLf~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 24 EELP-GLFNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred hhcc-cccchhhhhhhhccc-CceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 3444 345788999999999 56899999999999999999999 67999999999999999999999999999999999
Q ss_pred CCCCcEEeccCCCCc-cccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccccccccccCCCCcccccCc
Q 026675 127 LSGNVLLNLKDCMNL-KSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILINVVRQKDSDSWKKNVD 205 (235)
Q Consensus 127 l~~L~~L~l~~~~~l-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~ 205 (235)
++-|++|++.+++.- ..+|..|..|..|+.|.+++| .+.-+|..++++++|+.|.+..|..++--.++..+..+++|.
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH 179 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh
Confidence 999999999985533 468988999999999999998 688899999999999999999998443222222244444444
Q ss_pred C
Q 026675 206 K 206 (235)
Q Consensus 206 ~ 206 (235)
.
T Consensus 180 i 180 (264)
T KOG0617|consen 180 I 180 (264)
T ss_pred c
Confidence 3
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.52 E-value=3.6e-15 Score=127.97 Aligned_cols=188 Identities=22% Similarity=0.211 Sum_probs=108.8
Q ss_pred cchhhhhhcccCcc--ccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCC-CCCCCCceE
Q 026675 34 PDIVQVLWDGIDTR--ELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKT-SGKDQLLEI 110 (235)
Q Consensus 34 ~~l~~~~l~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L 110 (235)
|.++.+....+.+. .+|+.+..+..|+.||+++| .++++|..+..-+++-+|+++. +.++.+|..+ -++.-|-+|
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhh
Confidence 44444444444432 35566666666666666663 3556666555555666666666 4455555332 234455556
Q ss_pred EecCccccCcchhhhcCCCCcEEeccCCC------------------------C-ccccchhhhccCCccEEcccCccCC
Q 026675 111 HLEGTAIRGLPASIELLSGNVLLNLKDCM------------------------N-LKSLPSTINRLRSLRMLHLSSCFKL 165 (235)
Q Consensus 111 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~------------------------~-l~~l~~~~~~~~~L~~L~l~~~~~~ 165 (235)
|+++|++..+|..+..+..|++|++++|+ . +..+|.++..+.+|..+|++.| .+
T Consensus 156 DLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~L 234 (1255)
T KOG0444|consen 156 DLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NL 234 (1255)
T ss_pred ccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CC
Confidence 66666666666555555555555555543 1 2346666777788888888876 67
Q ss_pred CccchhccCCCCCceeeccccccccccccCCC----CcccccCcCcccccccchhhhhccchhhHHhh
Q 026675 166 KNAPETLGKVESLEYCITSMCILINVVRQKDS----DSWKKNVDKGIKLSTTAISACSLACHWLIQTS 229 (235)
Q Consensus 166 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~~~l~~L~~~~~l~~l~~~~~~~~~~~l~~l~ 229 (235)
..+|+.+-.+++|+.|++++|. ++++.. +..++.|.. ...+...++.|.-.++.|+.+.
T Consensus 235 p~vPecly~l~~LrrLNLS~N~----iteL~~~~~~W~~lEtLNl-SrNQLt~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 235 PIVPECLYKLRNLRRLNLSGNK----ITELNMTEGEWENLETLNL-SRNQLTVLPDAVCKLTKLTKLY 297 (1255)
T ss_pred CcchHHHhhhhhhheeccCcCc----eeeeeccHHHHhhhhhhcc-ccchhccchHHHhhhHHHHHHH
Confidence 7888888888888888888888 444332 444444442 2233333444444455554443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.47 E-value=3.5e-15 Score=128.03 Aligned_cols=155 Identities=20% Similarity=0.249 Sum_probs=126.0
Q ss_pred CcccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceE
Q 026675 31 DKFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEI 110 (235)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 110 (235)
+..-++..++++.+.+..+|+.+.++++|+.|++++| .++++....+.+.+|++|++++ +.++.+|..++.++.|+.|
T Consensus 219 d~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKL 296 (1255)
T ss_pred hhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHH
Confidence 3444566677888888888888888888888888884 5777776677788888888888 5678888888888888888
Q ss_pred EecCcccc--CcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeecccccc
Q 026675 111 HLEGTAIR--GLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCIL 188 (235)
Q Consensus 111 ~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 188 (235)
.+.+|.++ ++|.+|+++..|+++..++ +.++-+|..+.+|+.|+.|.+.+| .+-.+|++++-++.|+.||+..|..
T Consensus 297 y~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 297 YANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred HhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcC
Confidence 88888665 7888888888888887776 788888888888888988888887 5667888888888899999888876
Q ss_pred c
Q 026675 189 I 189 (235)
Q Consensus 189 ~ 189 (235)
+
T Consensus 375 L 375 (1255)
T KOG0444|consen 375 L 375 (1255)
T ss_pred c
Confidence 4
No 9
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.39 E-value=3.8e-14 Score=120.18 Aligned_cols=170 Identities=23% Similarity=0.258 Sum_probs=136.3
Q ss_pred hhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCc
Q 026675 36 IVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGT 115 (235)
Q Consensus 36 l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 115 (235)
++.+.+..+.+..+|+.+.++..|+++||+.| .+..+|..+..++ |++|-++. ++++.+|+.++-...|..|+.+.|
T Consensus 100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n 176 (722)
T KOG0532|consen 100 LESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN 176 (722)
T ss_pred HHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhh
Confidence 33445556667777788888888888888884 4667777766555 78888877 678888988888888999999999
Q ss_pred cccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccccccccccC
Q 026675 116 AIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILINVVRQK 195 (235)
Q Consensus 116 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 195 (235)
.+..+|..++++.+|+.|++.+ +++..+|.....++ |..||+++| .+..+|-.|.++++|++|-+++|. +..+
T Consensus 177 ei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~Lp-Li~lDfScN-kis~iPv~fr~m~~Lq~l~LenNP----LqSP 249 (722)
T KOG0532|consen 177 EIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLP-LIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNP----LQSP 249 (722)
T ss_pred hhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCc-eeeeecccC-ceeecchhhhhhhhheeeeeccCC----CCCC
Confidence 9999999999999999999888 68888887777555 888999987 688999999999999999999999 7777
Q ss_pred CC-CcccccCcCcccccccchhhh
Q 026675 196 DS-DSWKKNVDKGIKLSTTAISAC 218 (235)
Q Consensus 196 ~~-~~~l~~L~~~~~l~~l~~~~~ 218 (235)
|. +.....+.+ +++|++..|
T Consensus 250 PAqIC~kGkVHI---FKyL~~qA~ 270 (722)
T KOG0532|consen 250 PAQICEKGKVHI---FKYLSTQAC 270 (722)
T ss_pred hHHHHhccceee---eeeecchhc
Confidence 77 666555665 666777666
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.37 E-value=3.7e-14 Score=115.90 Aligned_cols=146 Identities=23% Similarity=0.235 Sum_probs=106.0
Q ss_pred hhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCcccc
Q 026675 39 VLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIR 118 (235)
Q Consensus 39 ~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 118 (235)
+.++++.+.++|..+..++.+...-+..++.+..+|..++.+++|..|+++. +.+.++|..++.+..||.|+++.|++.
T Consensus 393 VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 393 VNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFNRFR 471 (565)
T ss_pred EecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheecccccccc
Confidence 3445555555555555444443332223244555666677788888888887 677778877777888888888888888
Q ss_pred CcchhhhcCCCCcEEeccCCCCccccch-hhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 119 GLPASIELLSGNVLLNLKDCMNLKSLPS-TINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 119 ~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
.+|+.+..+..++++ ++.++.+..++. .+.+|..|..||+.+| .+..+|+.++++++|++|.+++|.
T Consensus 472 ~lP~~~y~lq~lEtl-las~nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 472 MLPECLYELQTLETL-LASNNQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred cchHHHhhHHHHHHH-HhccccccccChHHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence 888766666666665 444467777764 4889999999999987 688899999999999999999999
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.37 E-value=2.6e-14 Score=116.72 Aligned_cols=145 Identities=29% Similarity=0.365 Sum_probs=70.7
Q ss_pred hhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCccc
Q 026675 38 QVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAI 117 (235)
Q Consensus 38 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~ 117 (235)
.+.-.++.+..+|+.+.++.++..+++.++ .+++.|+..-.|+.|+.|+... +.++.+|+.++.+.+|..|++.+|.+
T Consensus 141 dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 141 DLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhccc
Confidence 333444455555555555555555555552 3333333333344444444444 33444444444444444444444444
Q ss_pred cCcc----------------------hhhh-cCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccC
Q 026675 118 RGLP----------------------ASIE-LLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGK 174 (235)
Q Consensus 118 ~~l~----------------------~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 174 (235)
..+| .... .+.++.+||+.+ ++++++|+.+.-+.+|..||+++| .++.+|..+++
T Consensus 219 ~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgn 296 (565)
T KOG0472|consen 219 RFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGN 296 (565)
T ss_pred ccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccCC-ccccCCccccc
Confidence 4444 3332 445555555555 455555555555555555555554 34555555555
Q ss_pred CCCCceeeccccc
Q 026675 175 VESLEYCITSMCI 187 (235)
Q Consensus 175 l~~L~~L~l~~~~ 187 (235)
+ +|+.|.+.+|.
T Consensus 297 l-hL~~L~leGNP 308 (565)
T KOG0472|consen 297 L-HLKFLALEGNP 308 (565)
T ss_pred c-eeeehhhcCCc
Confidence 5 55555555555
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.29 E-value=1.7e-12 Score=110.77 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=23.0
Q ss_pred hhhcccCccccch-hhhhccCCcEEeecCCcCCcccccccccCCccCeeeccc
Q 026675 39 VLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSS 90 (235)
Q Consensus 39 ~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 90 (235)
++++++-+.++-. .|.++++|+.+++.. +.++.+|...+...+|+.|++..
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEeeec
Confidence 3444444443322 344555555555555 23445554333333344444444
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.29 E-value=9e-13 Score=112.41 Aligned_cols=143 Identities=18% Similarity=0.169 Sum_probs=78.7
Q ss_pred hcccCccccch-hhhhccCCcEEeecCCcCCccc-ccccccCCccCeeeccccccccccC-CCCCCCCCCceEEecCccc
Q 026675 41 WDGIDTRELSF-AIELLFRLVQLTLNGCKNLERL-PRTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIHLEGTAI 117 (235)
Q Consensus 41 l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~ 117 (235)
++.+.+..+|. .|..+++|+.|+|..|. +..+ ...|.++++|+.|.+.+ +.+..+. -.+..|.++++|++..|.+
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhh-cCcccccCcceeeecccceeecccchh
Confidence 33444444444 23335555555555532 2222 22344555555555555 2233332 2344566666777777766
Q ss_pred cCcch-hhhcCCCCcEEeccCCCCcccc-chhhhccCCccEEcccCccCCCccch-hccCCCCCceeeccccc
Q 026675 118 RGLPA-SIELLSGNVLLNLKDCMNLKSL-PSTINRLRSLRMLHLSSCFKLKNAPE-TLGKVESLEYCITSMCI 187 (235)
Q Consensus 118 ~~l~~-~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 187 (235)
+.+.+ ++.++++|+.|++++| .+..+ ++....+++|++|+++.| .++.+++ .+..+..|++|.+++|+
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred hhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccc
Confidence 65443 3566777777777763 44433 455666777777777776 4555553 45566677777777777
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.25 E-value=9.1e-13 Score=117.29 Aligned_cols=174 Identities=22% Similarity=0.181 Sum_probs=124.1
Q ss_pred cchhhhhhcccCccccchhhhhccCCcEEeecCCcCCccccccc--------------------------ccCCccCeee
Q 026675 34 PDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTT--------------------------SALKYLSTLN 87 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--------------------------~~l~~L~~L~ 87 (235)
..++.+....+.++.+|+...++++|+.|++..|+ +..+|+.+ ..++.|+.|+
T Consensus 287 ~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Ly 365 (1081)
T KOG0618|consen 287 TSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELY 365 (1081)
T ss_pred hhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHH
Confidence 34555666777888888888889999999998854 44443321 1345577777
Q ss_pred ccccccccccCCCCCCCCCCceEEecCccccCcchh-hhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCC
Q 026675 88 LSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLK 166 (235)
Q Consensus 88 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~ 166 (235)
+.+|......-+.+..+++|+.|++++|+++.+|.. +.++..|+.|++++ +.++.+|..+..++.|++|...+| .+.
T Consensus 366 lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN-~l~ 443 (1081)
T KOG0618|consen 366 LANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSN-QLL 443 (1081)
T ss_pred HhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCC-cee
Confidence 777554444444577889999999999999988764 56888899999998 688889988888999999888776 677
Q ss_pred ccchhccCCCCCceeeccccccccccccCCCCcccccCcCcccccccchhhhh
Q 026675 167 NAPETLGKVESLEYCITSMCILINVVRQKDSDSWKKNVDKGIKLSTTAISACS 219 (235)
Q Consensus 167 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~l~~l~~~~~~ 219 (235)
.+| .+..+++|+.+|++.|.. +.... ...+. .++|+++++++..
T Consensus 444 ~fP-e~~~l~qL~~lDlS~N~L----~~~~l---~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 444 SFP-ELAQLPQLKVLDLSCNNL----SEVTL---PEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred ech-hhhhcCcceEEecccchh----hhhhh---hhhCC-CcccceeeccCCc
Confidence 888 567888899999998883 22111 11112 2566677776665
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.19 E-value=6.8e-12 Score=103.43 Aligned_cols=138 Identities=17% Similarity=0.014 Sum_probs=74.1
Q ss_pred chhhhhccCCcEEeecCCcCCcccccccccCCc---cCeeecccccccc----ccCCCCCCC-CCCceEEecCcccc---
Q 026675 50 SFAIELLFRLVQLTLNGCKNLERLPRTTSALKY---LSTLNLSSLLKFR----EFPEKTSGK-DQLLEIHLEGTAIR--- 118 (235)
Q Consensus 50 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~----~~p~~~~~l-~~L~~L~l~~~~~~--- 118 (235)
+..+..+++|+.|++++|......+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++++|.++
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 345556667777777776544333333333333 7777777654321 122233344 66777777777655
Q ss_pred --CcchhhhcCCCCcEEeccCCCCcc----ccchhhhccCCccEEcccCccCCC----ccchhccCCCCCceeeccccc
Q 026675 119 --GLPASIELLSGNVLLNLKDCMNLK----SLPSTINRLRSLRMLHLSSCFKLK----NAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 119 --~l~~~~~~l~~L~~L~l~~~~~l~----~l~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~ 187 (235)
.++..+..+++|++|++++|.... .++..+...++|+.|++++|.... .++..+..+++|++|++++|.
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 233345555667777776643321 223334445567777777663211 233345556667777777665
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.19 E-value=4.6e-12 Score=104.44 Aligned_cols=154 Identities=18% Similarity=0.025 Sum_probs=108.3
Q ss_pred cchhhhhhcccCc-----cccchhhhhccCCcEEeecCCcCC------cccccccccCCccCeeeccccccccccCCCCC
Q 026675 34 PDIVQVLWDGIDT-----RELSFAIELLFRLVQLTLNGCKNL------ERLPRTTSALKYLSTLNLSSLLKFREFPEKTS 102 (235)
Q Consensus 34 ~~l~~~~l~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~ 102 (235)
..++.+.+.++.+ ..++..+...+.++.++++++... ..++..+..+++|+.|++++|......+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 3456666777666 445667778888999999886433 12234566788999999999776544444333
Q ss_pred CC---CCCceEEecCccccC-----cchhhhcC-CCCcEEeccCCCCcc----ccchhhhccCCccEEcccCccCCC---
Q 026675 103 GK---DQLLEIHLEGTAIRG-----LPASIELL-SGNVLLNLKDCMNLK----SLPSTINRLRSLRMLHLSSCFKLK--- 166 (235)
Q Consensus 103 ~l---~~L~~L~l~~~~~~~-----l~~~~~~l-~~L~~L~l~~~~~l~----~l~~~~~~~~~L~~L~l~~~~~~~--- 166 (235)
.+ ++|+.|++++|.+.. +...+..+ ++|+.|++++|.... .++..+..+++|+.|++++|....
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 33 459999999998772 33456667 899999999976442 344456778899999999984321
Q ss_pred -ccchhccCCCCCceeeccccc
Q 026675 167 -NAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 167 -~~~~~~~~l~~L~~L~l~~~~ 187 (235)
.++..+...++|+.|++++|.
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCc
Confidence 244455667899999999997
No 17
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=3.6e-12 Score=108.33 Aligned_cols=164 Identities=23% Similarity=0.244 Sum_probs=142.7
Q ss_pred ccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEe
Q 026675 33 FPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHL 112 (235)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 112 (235)
+.+...++++.+.+.++|..++.+..|..+.++. +.+..+|..+..+..|++++++. +.+..+|..++.++ |+.|-+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEE
Confidence 3456667888999999999999999999999988 46788999999999999999999 67888999899888 999999
Q ss_pred cCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeecccccccccc
Q 026675 113 EGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILINVV 192 (235)
Q Consensus 113 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 192 (235)
++|+++.+|..++.+..|..|+.+. +.+..+|..++.+.+|+.|.++.| .+..+|+.+..+ .|..||+++|+ +
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l~vrRn-~l~~lp~El~~L-pLi~lDfScNk----i 223 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCSL-PLIRLDFSCNK----I 223 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhCC-ceeeeecccCc----e
Confidence 9999999999999889999999987 688888888999999999999998 677888877754 48999999999 7
Q ss_pred ccCCC-CcccccCcC
Q 026675 193 RQKDS-DSWKKNVDK 206 (235)
Q Consensus 193 ~~~~~-~~~l~~L~~ 206 (235)
..+|- +..++.|..
T Consensus 224 s~iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 224 SYLPVDFRKMRHLQV 238 (722)
T ss_pred eecchhhhhhhhhee
Confidence 77877 777766653
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.09 E-value=1.9e-10 Score=104.22 Aligned_cols=139 Identities=22% Similarity=0.297 Sum_probs=75.1
Q ss_pred chhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecC
Q 026675 35 DIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEG 114 (235)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 114 (235)
+++.++++++.+..+|..+. .+|+.|++++|. +..+|..+ ..+|+.|++++ +.+..+|..+. ++|+.|++++
T Consensus 221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l--~s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERL--PSALQSLDLFH-NKISCLPENLP--EELRYLSVYD 292 (754)
T ss_pred CCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhH--hCCCCEEECcC-CccCccccccC--CCCcEEECCC
Confidence 56666677777776666543 356666666643 44555443 23566666665 34445554332 3566666666
Q ss_pred ccccCcchhhh-------------------cCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCC
Q 026675 115 TAIRGLPASIE-------------------LLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKV 175 (235)
Q Consensus 115 ~~~~~l~~~~~-------------------~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 175 (235)
|.++.+|..+. ..++|+.|++++| .+..+|..+ .++|+.|++++| .++.+|..+ .
T Consensus 293 N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N-~L~~LP~~l--p 366 (754)
T PRK15370 293 NSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN-ALTSLPASL--PPELQVLDVSKN-QITVLPETL--P 366 (754)
T ss_pred CccccCcccchhhHHHHHhcCCccccCCccccccceeccccCC-ccccCChhh--cCcccEEECCCC-CCCcCChhh--c
Confidence 65554443211 1234555555553 344455433 246666666666 345555543 2
Q ss_pred CCCceeeccccc
Q 026675 176 ESLEYCITSMCI 187 (235)
Q Consensus 176 ~~L~~L~l~~~~ 187 (235)
+.|+.|++++|.
T Consensus 367 ~~L~~LdLs~N~ 378 (754)
T PRK15370 367 PTITTLDVSRNA 378 (754)
T ss_pred CCcCEEECCCCc
Confidence 456666666665
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.07 E-value=1.2e-11 Score=101.06 Aligned_cols=66 Identities=24% Similarity=0.267 Sum_probs=54.8
Q ss_pred cchhhhhhcccCccccch-hhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCC
Q 026675 34 PDIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPE 99 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~ 99 (235)
+....++++.+.+..+|+ +|+.+++|+.|||++|+.-..-|+.|.++++|..|-+.++++++++|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 456678899999999998 788999999999999664444477899999999998888788888874
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.03 E-value=4.9e-10 Score=101.55 Aligned_cols=140 Identities=21% Similarity=0.290 Sum_probs=99.8
Q ss_pred cchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEec
Q 026675 34 PDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLE 113 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 113 (235)
+.+..++++++.+..+|..+. .+|+.|++++|. ++.+|..+ ..+|+.|++++| .+..+|..+. .+|+.|+++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l--~~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATL--PDTIQEMELSIN-RITELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhh--hccccEEECcCC-ccCcCChhHh--CCCCEEECc
Confidence 357778899999999998764 699999999964 67788654 457999999995 5667887654 589999999
Q ss_pred CccccCcchhhhcCCCCcEEeccCCCCccccchhhh-------------------ccCCccEEcccCccCCCccchhccC
Q 026675 114 GTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTIN-------------------RLRSLRMLHLSSCFKLKNAPETLGK 174 (235)
Q Consensus 114 ~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~-------------------~~~~L~~L~l~~~~~~~~~~~~~~~ 174 (235)
+|.++.+|..+. .+|+.|++++| .+..+|..+. -.++|+.|++++| .++.+|..+
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt~LP~~l-- 344 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN-ALTSLPASL-- 344 (754)
T ss_pred CCccCccccccC--CCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCccccccceeccccCC-ccccCChhh--
Confidence 999998887653 58999999985 5666654221 1134555555555 344455433
Q ss_pred CCCCceeeccccc
Q 026675 175 VESLEYCITSMCI 187 (235)
Q Consensus 175 l~~L~~L~l~~~~ 187 (235)
+++|+.|++++|.
T Consensus 345 ~~sL~~L~Ls~N~ 357 (754)
T PRK15370 345 PPELQVLDVSKNQ 357 (754)
T ss_pred cCcccEEECCCCC
Confidence 2466777777766
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=3.8e-10 Score=84.57 Aligned_cols=124 Identities=20% Similarity=0.248 Sum_probs=41.3
Q ss_pred hccCCcEEeecCCcCCcccccccc-cCCccCeeeccccccccccCCCCCCCCCCceEEecCccccCcchhh-hcCCCCcE
Q 026675 55 LLFRLVQLTLNGCKNLERLPRTTS-ALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPASI-ELLSGNVL 132 (235)
Q Consensus 55 ~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~-~~l~~L~~ 132 (235)
+..+++.|++.+|. +..+.. ++ .+.+|+.|+++. +.++.+. .+..++.|++|++++|.++.+..++ ..+++|+.
T Consensus 17 n~~~~~~L~L~~n~-I~~Ie~-L~~~l~~L~~L~Ls~-N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-ISTIEN-LGATLDKLEVLDLSN-NQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S---TT-TT--EEE-TT-S--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccc-cccccc-hhhhhcCCCEEECCC-CCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 45567777777743 444432 33 466777777777 4455554 3556777788888888777776554 35777888
Q ss_pred EeccCCCCccccc--hhhhccCCccEEcccCccCCCc---cchhccCCCCCceeec
Q 026675 133 LNLKDCMNLKSLP--STINRLRSLRMLHLSSCFKLKN---APETLGKVESLEYCIT 183 (235)
Q Consensus 133 L~l~~~~~l~~l~--~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l 183 (235)
|++++ +.+..+. ..+..+++|+.|++.+|+..+. -...+..+|+|+.||-
T Consensus 93 L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcC-CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 87776 4444432 2355677777888777754322 1123556777777764
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.97 E-value=5.3e-11 Score=106.30 Aligned_cols=130 Identities=24% Similarity=0.254 Sum_probs=101.5
Q ss_pred hccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccC-CCCCCCCCCceEEecCccccCcchhhhcCCCCcEE
Q 026675 55 LLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIHLEGTAIRGLPASIELLSGNVLL 133 (235)
Q Consensus 55 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L 133 (235)
.+..|+.|++.+|......-+.+.++++|++|++++ +.+..|| ..+.+++.|+.|++++|.++.+|..+..+..|++|
T Consensus 357 ~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTL 435 (1081)
T ss_pred hhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHH
Confidence 456677777777655444444577899999999999 6688888 45678899999999999999999999999999999
Q ss_pred eccCCCCccccchhhhccCCccEEcccCccCCCccc-hhccCCCCCceeecccccc
Q 026675 134 NLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAP-ETLGKVESLEYCITSMCIL 188 (235)
Q Consensus 134 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 188 (235)
...+ +.+..+| .+..++.|+.+|++.| .++.+. +.....++|++||+++|..
T Consensus 436 ~ahs-N~l~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 436 RAHS-NQLLSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhcC-Cceeech-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 7776 7888899 4889999999999987 455422 2222338899999999983
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.90 E-value=6e-09 Score=94.39 Aligned_cols=139 Identities=22% Similarity=0.197 Sum_probs=67.8
Q ss_pred ccchhhhhhcccCccccchhhhh-----------------ccCCcEEeecCCcCCcccccccccCCccCeeecccccccc
Q 026675 33 FPDIVQVLWDGIDTRELSFAIEL-----------------LFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFR 95 (235)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~l~~-----------------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 95 (235)
.+.++++++++|.+..+|....+ ...|+.|++++| .++.+|.. +++|+.|++++| .+.
T Consensus 241 p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N-~L~ 315 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDN-QLA 315 (788)
T ss_pred CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCC-cccccccc---ccccceeECCCC-ccc
Confidence 46677777777766666543211 123344444443 23444431 356777777774 444
Q ss_pred ccCCCCCC-----------------CCCCceEEecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEc
Q 026675 96 EFPEKTSG-----------------KDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLH 158 (235)
Q Consensus 96 ~~p~~~~~-----------------l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 158 (235)
.+|..... ..+|++|++++|.++.+|.. ..+|+.|++.+ +.+..+|.. +.+|+.|+
T Consensus 316 ~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~-N~L~~LP~l---~~~L~~Ld 388 (788)
T PRK15387 316 SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL---PSELYKLWAYN-NRLTSLPAL---PSGLKELI 388 (788)
T ss_pred cCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC---Ccccceehhhc-cccccCccc---ccccceEE
Confidence 44431110 12456666666665555532 12344444443 234444431 23456666
Q ss_pred ccCccCCCccchhccCCCCCceeeccccc
Q 026675 159 LSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 159 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
+++| .++.+|.. .++|+.|++++|.
T Consensus 389 Ls~N-~Lt~LP~l---~s~L~~LdLS~N~ 413 (788)
T PRK15387 389 VSGN-RLTSLPVL---PSELKELMVSGNR 413 (788)
T ss_pred ecCC-cccCCCCc---ccCCCEEEccCCc
Confidence 6665 34445432 2456666666665
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.89 E-value=9.3e-10 Score=93.63 Aligned_cols=150 Identities=30% Similarity=0.403 Sum_probs=106.1
Q ss_pred cchhhhhhcccCccccchhhhhcc-CCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEe
Q 026675 34 PDIVQVLWDGIDTRELSFAIELLF-RLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHL 112 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 112 (235)
+.+..+.+.++.+.++++....+. +|+.|+++++ .+..+|..+..++.|+.|+++. +.+.++|...+..+.|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheec
Confidence 345666777777888887777674 8888888884 4666665677788888888888 567777776656788888888
Q ss_pred cCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 113 EGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 113 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
+++.+..+|..+..+..|+.+.++++. ....+..+..+..+..+.+.++ .+..++..+..+++++.|++++|.
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCc-eeeeccchhccccccceecccccc
Confidence 888888888776667778888877643 4444444666666777766665 334445556677777777777777
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=7.2e-10 Score=91.83 Aligned_cols=95 Identities=22% Similarity=0.182 Sum_probs=50.6
Q ss_pred CCCCceEEecCcc-ccCcchhhhcCCCCcEEeccCCCCccccc--hhhhccCCccEEcccCccCCCc--cchh-----cc
Q 026675 104 KDQLLEIHLEGTA-IRGLPASIELLSGNVLLNLKDCMNLKSLP--STINRLRSLRMLHLSSCFKLKN--APET-----LG 173 (235)
Q Consensus 104 l~~L~~L~l~~~~-~~~l~~~~~~l~~L~~L~l~~~~~l~~l~--~~~~~~~~L~~L~l~~~~~~~~--~~~~-----~~ 173 (235)
+|+|+.|++.+|. +..-......++.|+.|+|++|+.+ +.+ ...+.++.|..|+++.|. +.+ .|.. ..
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTH 298 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccC-cchhcCCCccchhhhc
Confidence 4455555555542 1111112234556667777764433 333 236677777777777763 332 2222 34
Q ss_pred CCCCCceeeccccccccccccCCCCcccccC
Q 026675 174 KVESLEYCITSMCILINVVRQKDSDSWKKNV 204 (235)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 204 (235)
.+++|+.|++..|+ +.+++.+..++.+
T Consensus 299 ~f~kL~~L~i~~N~----I~~w~sl~~l~~l 325 (505)
T KOG3207|consen 299 TFPKLEYLNISENN----IRDWRSLNHLRTL 325 (505)
T ss_pred ccccceeeecccCc----cccccccchhhcc
Confidence 56778888888888 5555554444333
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.82 E-value=9.3e-09 Score=93.20 Aligned_cols=76 Identities=25% Similarity=0.199 Sum_probs=50.4
Q ss_pred CCCceEEecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeecc
Q 026675 105 DQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITS 184 (235)
Q Consensus 105 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 184 (235)
.+|+.|++++|.++.+|.. .++|+.|++++| .+..+|.. ..+|+.|++++| .++.+|..+..+++|+.++++
T Consensus 382 ~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 382 SGLKELIVSGNRLTSLPVL---PSELKELMVSGN-RLTSLPML---PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLE 453 (788)
T ss_pred cccceEEecCCcccCCCCc---ccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccC-cccccChHHhhccCCCeEECC
Confidence 3566677777766665542 246677777763 45666642 235667777776 466777777778888888888
Q ss_pred cccc
Q 026675 185 MCIL 188 (235)
Q Consensus 185 ~~~~ 188 (235)
+|..
T Consensus 454 ~N~L 457 (788)
T PRK15387 454 GNPL 457 (788)
T ss_pred CCCC
Confidence 8874
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.78 E-value=2.6e-09 Score=98.43 Aligned_cols=149 Identities=23% Similarity=0.233 Sum_probs=112.0
Q ss_pred hhhhhcccCccccchhhhhccCCcEEeecCCcC-Cccccc-ccccCCccCeeeccccccccccCCCCCCCCCCceEEecC
Q 026675 37 VQVLWDGIDTRELSFAIELLFRLVQLTLNGCKN-LERLPR-TTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEG 114 (235)
Q Consensus 37 ~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 114 (235)
+.+.+.++.+..++.+. .++.|+.|-+..+.. +..++. .|..|+.|++|++++|..+..+|..++.+.+||+|++++
T Consensus 526 rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred eEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence 44455566666666553 455788888888652 444443 477899999999999999999999999999999999999
Q ss_pred ccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCcc-CC-CccchhccCCCCCceeecccc
Q 026675 115 TAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCF-KL-KNAPETLGKVESLEYCITSMC 186 (235)
Q Consensus 115 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~l~~L~~L~l~~~ 186 (235)
+.+..+|.+++.+++|.+|++..+..+..+|.....+.+|++|.+..-. .. ...-..+..+.+|+.+.+...
T Consensus 605 t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 605 TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 9999999999999999999999988888888767779999999886642 11 112233445555655554433
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1e-09 Score=90.97 Aligned_cols=179 Identities=16% Similarity=0.078 Sum_probs=109.6
Q ss_pred cchhhhhhcccCccccc--hhhhhccCCcEEeecCCcCC--cccccccccCCccCeeeccccccccccC--CCCCCCCCC
Q 026675 34 PDIVQVLWDGIDTRELS--FAIELLFRLVQLTLNGCKNL--ERLPRTTSALKYLSTLNLSSLLKFREFP--EKTSGKDQL 107 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~p--~~~~~l~~L 107 (235)
..++.+.+.+......+ .....|++++.||++.|-+- ..+......+|+|+.|+++.|. +..+. ..-..+++|
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhh
Confidence 34455666666665554 35667888888888885322 2233345668888888888854 32222 112256788
Q ss_pred ceEEecCcccc--CcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccc--hhccCCCCCceeec
Q 026675 108 LEIHLEGTAIR--GLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAP--ETLGKVESLEYCIT 183 (235)
Q Consensus 108 ~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l 183 (235)
+.|.+++|+++ .+-..+..++++..|++..|..+..-......+..|+.||+++|..+. ++ ...+.++.|..|++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhc
Confidence 88888888877 344456678888888888865333322334456678888888875443 33 23567788888888
Q ss_pred cccccccccccCCC--CcccccCcCcccccccchhhh
Q 026675 184 SMCILINVVRQKDS--DSWKKNVDKGIKLSTTAISAC 218 (235)
Q Consensus 184 ~~~~~~~~~~~~~~--~~~l~~L~~~~~l~~l~~~~~ 218 (235)
+.|. ++++.. .+++........++.|++...
T Consensus 279 s~tg----i~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 279 SSTG----IASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred cccC----cchhcCCCccchhhhcccccceeeecccC
Confidence 8777 443322 333444444555566655544
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=4.5e-09 Score=89.44 Aligned_cols=149 Identities=26% Similarity=0.306 Sum_probs=126.8
Q ss_pred chhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecC
Q 026675 35 DIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEG 114 (235)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 114 (235)
+++.+++.++.+..+|..+..++.|+.|+++.| .+..+|......+.|+.|++++ +.+..+|........|+++.+++
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcC
Confidence 788999999999999888899999999999995 5788887665799999999999 67888998766677799999999
Q ss_pred ccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeecccccc
Q 026675 115 TAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCIL 188 (235)
Q Consensus 115 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 188 (235)
|.....+..+..+.++..+.+.+ +.+..++..++.++.++.|++++| .++.++. ++...+++.|+++++..
T Consensus 219 N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 219 NSIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred CcceecchhhhhcccccccccCC-ceeeeccchhccccccceeccccc-ccccccc-ccccCccCEEeccCccc
Confidence 97666777788888998888665 566666777889999999999998 5677776 77889999999999874
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=6e-09 Score=78.13 Aligned_cols=112 Identities=21% Similarity=0.228 Sum_probs=40.8
Q ss_pred CcccccccccCCccCeeeccccccccccCCCCC-CCCCCceEEecCccccCcchhhhcCCCCcEEeccCCCCccccchhh
Q 026675 70 LERLPRTTSALKYLSTLNLSSLLKFREFPEKTS-GKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTI 148 (235)
Q Consensus 70 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 148 (235)
+...+. +.+...+++|++++ +.++.+.. ++ .+.+|+.|++++|.++.++ ++..++.|+.|++++ +.+..+...+
T Consensus 9 i~~~~~-~~n~~~~~~L~L~~-n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l 83 (175)
T PF14580_consen 9 IEQIAQ-YNNPVKLRELNLRG-NQISTIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGL 83 (175)
T ss_dssp -----------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHH
T ss_pred cccccc-cccccccccccccc-cccccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccch
Confidence 344444 44566789999999 55665543 54 5789999999999999876 588899999999998 6888886545
Q ss_pred -hccCCccEEcccCccCCCccc--hhccCCCCCceeeccccc
Q 026675 149 -NRLRSLRMLHLSSCFKLKNAP--ETLGKVESLEYCITSMCI 187 (235)
Q Consensus 149 -~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~ 187 (235)
..+++|++|++++| .+..+. ..+..+++|+.|++.+|+
T Consensus 84 ~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 84 DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence 46899999999998 444433 346689999999999999
No 31
>PLN03150 hypothetical protein; Provisional
Probab=98.73 E-value=3.1e-08 Score=88.94 Aligned_cols=106 Identities=24% Similarity=0.257 Sum_probs=63.7
Q ss_pred cCeeeccccccccccCCCCCCCCCCceEEecCcccc-CcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccC
Q 026675 83 LSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIR-GLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSS 161 (235)
Q Consensus 83 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 161 (235)
++.|++++|.....+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.....+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 555666665444456666666666666666666665 5666666666666666666554555666666666666666666
Q ss_pred ccCCCccchhccC-CCCCceeecccccc
Q 026675 162 CFKLKNAPETLGK-VESLEYCITSMCIL 188 (235)
Q Consensus 162 ~~~~~~~~~~~~~-l~~L~~L~l~~~~~ 188 (235)
|.....+|..+.. ..++..+++.+|..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 6444456655443 23445566666553
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=2.9e-09 Score=84.78 Aligned_cols=128 Identities=20% Similarity=0.236 Sum_probs=71.3
Q ss_pred CcccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceE
Q 026675 31 DKFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEI 110 (235)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 110 (235)
+-|..++.++++++.+.++-+++.-.+.++.|++++| .+..+.. +..+++|+.|++++ +.++.+.---..+-+.+.|
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeeccc-chhHhhhhhHhhhcCEeee
Confidence 3445556666666666666666666666666666663 3444433 45566666666666 3333332211234455566
Q ss_pred EecCccccCcchhhhcCCCCcEEeccCCCCccccc--hhhhccCCccEEcccCcc
Q 026675 111 HLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLP--STINRLRSLRMLHLSSCF 163 (235)
Q Consensus 111 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~--~~~~~~~~L~~L~l~~~~ 163 (235)
.+++|.+..+. +++++.+|..|++.+ ++++.+. ..++++|.|+++.+.+|+
T Consensus 358 ~La~N~iE~LS-GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 358 KLAQNKIETLS-GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ehhhhhHhhhh-hhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC
Confidence 66666655544 456666666666666 3444332 235666666666666653
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.66 E-value=7.8e-08 Score=86.36 Aligned_cols=81 Identities=23% Similarity=0.264 Sum_probs=37.3
Q ss_pred CceEEecCcccc-CcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccc
Q 026675 107 LLEIHLEGTAIR-GLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSM 185 (235)
Q Consensus 107 L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 185 (235)
++.|+++++.+. .+|..+..+++|+.|++++|.....+|..++.+++|+.|++++|.....+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 344444444444 3444444444455554444333334444444444455555544433334444444444455554444
Q ss_pred cc
Q 026675 186 CI 187 (235)
Q Consensus 186 ~~ 187 (235)
|.
T Consensus 500 N~ 501 (623)
T PLN03150 500 NS 501 (623)
T ss_pred Cc
Confidence 44
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.62 E-value=6.9e-09 Score=82.66 Aligned_cols=103 Identities=22% Similarity=0.174 Sum_probs=48.8
Q ss_pred CCccCeeeccccccccccCCCCCCCCCCceEEecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcc
Q 026675 80 LKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHL 159 (235)
Q Consensus 80 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 159 (235)
+..|+++++++ +.++.+.+++.-.+.+++|++++|.+..+.. +..+++|+.|++++ +.+..+..+-..+-+++.|.+
T Consensus 283 Wq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccc-cchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhhhHhhhcCEeeeeh
Confidence 44555555555 3444455555555555555555555554443 45555555555555 333333333333344444444
Q ss_pred cCccCCCccchhccCCCCCceeeccccc
Q 026675 160 SSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
+.| .+..+. +++.+-+|..||+++|+
T Consensus 360 a~N-~iE~LS-GL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 360 AQN-KIETLS-GLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred hhh-hHhhhh-hhHhhhhheeccccccc
Confidence 444 222221 23344444445554444
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.8e-09 Score=84.61 Aligned_cols=178 Identities=20% Similarity=0.134 Sum_probs=113.6
Q ss_pred hhhhhhcccCcc--ccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccC--CCCCCCCCCceEE
Q 026675 36 IVQVLWDGIDTR--ELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFP--EKTSGKDQLLEIH 111 (235)
Q Consensus 36 l~~~~l~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~ 111 (235)
+++++++...+. .+..-+++|++|+.|.+.+...-..+...+..-..|+.|+++.|+.+++.. -.+.+|..|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 455566655442 234456788888888888865444444445556678899999888776654 3456788899999
Q ss_pred ecCcccc--Ccchhhhc-CCCCcEEeccCCCCc---cccchhhhccCCccEEcccCccCCCc-cchhccCCCCCceeecc
Q 026675 112 LEGTAIR--GLPASIEL-LSGNVLLNLKDCMNL---KSLPSTINRLRSLRMLHLSSCFKLKN-APETLGKVESLEYCITS 184 (235)
Q Consensus 112 l~~~~~~--~l~~~~~~-l~~L~~L~l~~~~~l---~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~ 184 (235)
++.|... .+...+.. -.+|..|+++++..- ..+..-..++|+|.+||+++|..++. +-..+.+++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 9988654 22322222 245777888876543 23344466789999999999866653 33567788899999999
Q ss_pred ccccccccccCCC-CcccccCcCcccccccchhhhhcc
Q 026675 185 MCILINVVRQKDS-DSWKKNVDKGIKLSTTAISACSLA 221 (235)
Q Consensus 185 ~~~~~~~~~~~~~-~~~l~~L~~~~~l~~l~~~~~~~~ 221 (235)
.|+.+ +|. +- .+..-+.+.++++-+|-.+
T Consensus 347 RCY~i-----~p~~~~---~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 347 RCYDI-----IPETLL---ELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hhcCC-----ChHHee---eeccCcceEEEEeccccCc
Confidence 99843 122 22 2233344566666655443
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.49 E-value=3.3e-08 Score=91.21 Aligned_cols=126 Identities=24% Similarity=0.269 Sum_probs=92.9
Q ss_pred chhhhhhcccC--ccccchh-hhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEE
Q 026675 35 DIVQVLWDGID--TRELSFA-IELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIH 111 (235)
Q Consensus 35 ~l~~~~l~~~~--~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 111 (235)
.++.+.+-++. +..++.. |..++.|++||+++|..+..+|..++.+-+|++|++++ ..+..+|..+++++.|.+||
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheec
Confidence 34444444554 5556554 56799999999999999999999999999999999999 77889999999999999999
Q ss_pred ecCcccc-CcchhhhcCCCCcEEeccCCC-Cc-cccchhhhccCCccEEcccC
Q 026675 112 LEGTAIR-GLPASIELLSGNVLLNLKDCM-NL-KSLPSTINRLRSLRMLHLSS 161 (235)
Q Consensus 112 l~~~~~~-~l~~~~~~l~~L~~L~l~~~~-~l-~~l~~~~~~~~~L~~L~l~~ 161 (235)
+..+... ..+.....+++|++|.+.... .. ...-..+.++.+|+.+....
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 9988644 456666679999999987643 11 11112244555555554433
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=4.8e-07 Score=55.80 Aligned_cols=57 Identities=28% Similarity=0.379 Sum_probs=29.0
Q ss_pred CCcEEeecCCcCCcccc-cccccCCccCeeeccccccccccC-CCCCCCCCCceEEecCcc
Q 026675 58 RLVQLTLNGCKNLERLP-RTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIHLEGTA 116 (235)
Q Consensus 58 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~ 116 (235)
+|++|++++| .+..+| ..+..+++|++|++++ +.++.++ ..+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555554 344444 2445555555555555 3333333 345555555555555554
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=3.5e-07 Score=56.45 Aligned_cols=14 Identities=43% Similarity=0.624 Sum_probs=5.5
Q ss_pred hhccCCccEEcccC
Q 026675 148 INRLRSLRMLHLSS 161 (235)
Q Consensus 148 ~~~~~~L~~L~l~~ 161 (235)
|..+++|++|++++
T Consensus 45 f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 45 FSNLPNLRYLDLSN 58 (61)
T ss_dssp TTTSTTESEEEETS
T ss_pred HcCCCCCCEEeCcC
Confidence 33334444444333
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.34 E-value=9.1e-08 Score=77.47 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=18.9
Q ss_pred hhhccCCccEEcccCccCCC----ccchhccCCCCCceeeccccc
Q 026675 147 TINRLRSLRMLHLSSCFKLK----NAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 147 ~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~ 187 (235)
.+.++++|+.||++.|.-.. .+...+..+++|+.+++++|.
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 34555555555555542111 122334444555555555555
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.33 E-value=1e-07 Score=78.51 Aligned_cols=143 Identities=21% Similarity=0.226 Sum_probs=70.2
Q ss_pred hhcccCccccchhhhhccCCcEEeecCCcCCccccc-ccccCCccCeeeccccccccccCCCCCCCCCCceEEecC-ccc
Q 026675 40 LWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPR-TTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEG-TAI 117 (235)
Q Consensus 40 ~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~ 117 (235)
...+-++.+||..+. +..+.+.|..| .++.+|+ .|+.+++|+.|+|+.|+....-|.++..+++|..|-+.+ |+|
T Consensus 52 dCr~~GL~eVP~~LP--~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLP--PETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred EccCCCcccCcccCC--CcceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 334444555554432 33444555552 3444443 355555666666666332233344555555555444444 555
Q ss_pred cCcchh-hhcCCCCcEEeccCCCCccccc-hhhhccCCccEEcccCccCCCccch-hccCCCCCceeeccccc
Q 026675 118 RGLPAS-IELLSGNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLKNAPE-TLGKVESLEYCITSMCI 187 (235)
Q Consensus 118 ~~l~~~-~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 187 (235)
+.+|+. ++.+.+++-|.+.- .++..++ +.+..++++..|.+-+| .++.++. .+..+..++++++..|.
T Consensus 129 ~~l~k~~F~gL~slqrLllNa-n~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 555543 34555555555544 2444443 34555555555555554 3344443 44455555555555444
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.32 E-value=1.5e-08 Score=89.16 Aligned_cols=162 Identities=18% Similarity=0.117 Sum_probs=89.6
Q ss_pred chhhhhccCCcEEeecCCcCCccc----------------------------ccccc---cCCccCeeeccccccccccC
Q 026675 50 SFAIELLFRLVQLTLNGCKNLERL----------------------------PRTTS---ALKYLSTLNLSSLLKFREFP 98 (235)
Q Consensus 50 ~~~l~~l~~L~~L~l~~~~~~~~~----------------------------~~~~~---~l~~L~~L~l~~~~~~~~~p 98 (235)
|-.+..+++|++|.+.+|+.-... ...+. .+..|.+.+.++ +.+..+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsy-N~L~~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSY-NRLVLMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcch-hhHHhHH
Confidence 556778889999999888632100 00000 122344444444 3444444
Q ss_pred CCCCCCCCCceEEecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCC
Q 026675 99 EKTSGKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESL 178 (235)
Q Consensus 99 ~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 178 (235)
+++.-++.|+.||+++|.++... .+..+++|++||+++ +.+..+|..-..-.+|+.|.+++| -++.+- ++.++.+|
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrnN-~l~tL~-gie~LksL 256 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRNN-ALTTLR-GIENLKSL 256 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhhhheeeeeccc-HHHhhh-hHHhhhhh
Confidence 45555667777777777777655 567777777777777 566666642111123777777776 333332 34567777
Q ss_pred ceeeccccccccccccCCCCcccccCcCcccccccchhhhhccch
Q 026675 179 EYCITSMCILINVVRQKDSDSWKKNVDKGIKLSTTAISACSLACH 223 (235)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~l~~l~~~~~~~~~~ 223 (235)
+.||++.|- +... ..|.-|-.+..|+.+.+.+++.-|+
T Consensus 257 ~~LDlsyNl----l~~h---seL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 257 YGLDLSYNL----LSEH---SELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hccchhHhh----hhcc---hhhhHHHHHHHHHHHhhcCCccccC
Confidence 777777776 2222 2222222233355666665555443
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.31 E-value=8.5e-08 Score=77.64 Aligned_cols=179 Identities=16% Similarity=0.168 Sum_probs=109.6
Q ss_pred chhhhhccCCcEEeecCCcCCcc-------------cccccccCCccCeeeccccccccc-----cCCCCCCCCCCceEE
Q 026675 50 SFAIELLFRLVQLTLNGCKNLER-------------LPRTTSALKYLSTLNLSSLLKFRE-----FPEKTSGKDQLLEIH 111 (235)
Q Consensus 50 ~~~l~~l~~L~~L~l~~~~~~~~-------------~~~~~~~l~~L~~L~l~~~~~~~~-----~p~~~~~l~~L~~L~ 111 (235)
...+.++..|++|++.+|..-.. ...-...-+.|+++..++| .+.. +...+...+.|+.+.
T Consensus 113 ~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr 191 (382)
T KOG1909|consen 113 EELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVR 191 (382)
T ss_pred HHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccceEE
Confidence 34455666666666666542110 0111233456777777763 3332 223555677888888
Q ss_pred ecCcccc-----CcchhhhcCCCCcEEeccCCCCcc----ccchhhhccCCccEEcccCccCCCc----cchhc-cCCCC
Q 026675 112 LEGTAIR-----GLPASIELLSGNVLLNLKDCMNLK----SLPSTINRLRSLRMLHLSSCFKLKN----APETL-GKVES 177 (235)
Q Consensus 112 l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~l~----~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~-~~l~~ 177 (235)
+.+|.|. .+...+..+++|++||+.+|.... .+...+..+++|+++++++|-.-+. +-..+ ...+.
T Consensus 192 ~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~ 271 (382)
T KOG1909|consen 192 LSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPS 271 (382)
T ss_pred EecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCC
Confidence 8888665 244567899999999999854332 2345567788999999999933221 22333 24788
Q ss_pred CceeeccccccccccccCCCCcccccCcCcccccccchhhhhc--cchhhHHhhhhCC
Q 026675 178 LEYCITSMCILINVVRQKDSDSWKKNVDKGIKLSTTAISACSL--ACHWLIQTSRAMP 233 (235)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~l~~l~~~~~~~--~~~~l~~l~~~~~ 233 (235)
|+.+.+.+|. ++.-.....-.-+..-+.|..|++++|.. .+..+..+...++
T Consensus 272 L~vl~l~gNe----It~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~ 325 (382)
T KOG1909|consen 272 LEVLELAGNE----ITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFD 325 (382)
T ss_pred CceeccCcch----hHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhcc
Confidence 9999999998 33222210000111134577888888877 7888877776654
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.30 E-value=2e-06 Score=72.49 Aligned_cols=32 Identities=34% Similarity=0.468 Sum_probs=17.9
Q ss_pred CCccEEcccCccCCCccchhccCCCCCceeecccc
Q 026675 152 RSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMC 186 (235)
Q Consensus 152 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 186 (235)
++|++|++++|... .+|..+ ..+|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKL--PESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCcccc--cccCcEEEeccc
Confidence 36777777777433 334322 246677766554
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=3e-07 Score=73.31 Aligned_cols=151 Identities=25% Similarity=0.312 Sum_probs=109.8
Q ss_pred hhhhhhcccCccc-cchhhhhccCCcEEeecCCcCCcccc--cccccCCccCeeeccccccccccCC-CC-CCCCCCceE
Q 026675 36 IVQVLWDGIDTRE-LSFAIELLFRLVQLTLNGCKNLERLP--RTTSALKYLSTLNLSSLLKFREFPE-KT-SGKDQLLEI 110 (235)
Q Consensus 36 l~~~~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~p~-~~-~~l~~L~~L 110 (235)
++.+.++|..++. +-..+.+-..|+.|+++.|+.+++.. ..+.+++.|..|++++|...+.... .+ +--+.|+.|
T Consensus 212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L 291 (419)
T KOG2120|consen 212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL 291 (419)
T ss_pred hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence 3456677766643 44567788999999999999887643 3467899999999999875544321 11 123678889
Q ss_pred EecCcccc----CcchhhhcCCCCcEEeccCCCCcccc-chhhhccCCccEEcccCccCCCccchh---ccCCCCCceee
Q 026675 111 HLEGTAIR----GLPASIELLSGNVLLNLKDCMNLKSL-PSTINRLRSLRMLHLSSCFKLKNAPET---LGKVESLEYCI 182 (235)
Q Consensus 111 ~l~~~~~~----~l~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~L~ 182 (235)
+++++.-. .+..-...++++..||+++|..++.- -..|..++.|++|.++.|-.+ .|+. +...++|.+|+
T Consensus 292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLd 369 (419)
T KOG2120|consen 292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLD 369 (419)
T ss_pred hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEE
Confidence 99988422 44445678999999999998877653 356788999999999999543 4443 56778999999
Q ss_pred cccccc
Q 026675 183 TSMCIL 188 (235)
Q Consensus 183 l~~~~~ 188 (235)
+.++-.
T Consensus 370 v~g~vs 375 (419)
T KOG2120|consen 370 VFGCVS 375 (419)
T ss_pred eccccC
Confidence 988864
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.18 E-value=4.6e-06 Score=70.32 Aligned_cols=115 Identities=23% Similarity=0.398 Sum_probs=78.5
Q ss_pred cchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEec
Q 026675 34 PDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLE 113 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 113 (235)
..+..++++++.+..+|. + -.+|+.|++++|..++.+|..+ .++|+.|++++|..+..+|.. |+.|++.
T Consensus 52 ~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~ 120 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEIK 120 (426)
T ss_pred cCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEEeC
Confidence 345567777888888772 2 3469999999988888888654 458999999998777777753 5555565
Q ss_pred Ccc---ccCcchhhhcC------------------CCCcEEeccCCCCccccchhhhccCCccEEcccCc
Q 026675 114 GTA---IRGLPASIELL------------------SGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSC 162 (235)
Q Consensus 114 ~~~---~~~l~~~~~~l------------------~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~ 162 (235)
.+. +..+|.++..+ ++|++|++++|..+. +|.. -..+|+.|+++.+
T Consensus 121 ~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~--LP~SLk~L~ls~n 187 (426)
T PRK15386 121 GSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEK--LPESLQSITLHIE 187 (426)
T ss_pred CCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Cccc--ccccCcEEEeccc
Confidence 543 34566554433 478999999887553 3432 2247888988765
No 46
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.10 E-value=1.7e-06 Score=78.27 Aligned_cols=131 Identities=20% Similarity=0.243 Sum_probs=85.5
Q ss_pred ccCCcEEeecCCcCC-cccccccc-cCCccCeeeccccccc-cccCCCCCCCCCCceEEecCccccCcchhhhcCCCCcE
Q 026675 56 LFRLVQLTLNGCKNL-ERLPRTTS-ALKYLSTLNLSSLLKF-REFPEKTSGKDQLLEIHLEGTAIRGLPASIELLSGNVL 132 (235)
Q Consensus 56 l~~L~~L~l~~~~~~-~~~~~~~~-~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 132 (235)
-.+|++|+++|.... ...|..++ -+|+|+.|.+.+-... +++-....++++|..||+++++++.+ .+++.+++|++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 467888888884432 22333343 3788888888873221 23444555788899999999988877 57888888888
Q ss_pred EeccCCCCccccc--hhhhccCCccEEcccCccCCCc--cc----hhccCCCCCceeecccccc
Q 026675 133 LNLKDCMNLKSLP--STINRLRSLRMLHLSSCFKLKN--AP----ETLGKVESLEYCITSMCIL 188 (235)
Q Consensus 133 L~l~~~~~l~~l~--~~~~~~~~L~~L~l~~~~~~~~--~~----~~~~~l~~L~~L~l~~~~~ 188 (235)
|.+.+ -.+.... ..+.++++|+.||+|.-..... +. +.-..+++|+.||.+++..
T Consensus 200 L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRN-LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccC-CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 87765 3333322 2367788899999887543322 11 1123478888888887763
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.95 E-value=2.9e-06 Score=72.78 Aligned_cols=103 Identities=18% Similarity=0.147 Sum_probs=68.6
Q ss_pred cccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEE
Q 026675 32 KFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIH 111 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 111 (235)
.+..+..+.+.++.+..+...+..+++|++|++++| .++.+.. +..++.|+.|++++ +.++.+.. +..+++|+.++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l~~-N~i~~~~~-~~~l~~L~~l~ 168 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNLSG-NLISDISG-LESLKSLKLLD 168 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhheecc-CcchhccC-Cccchhhhccc
Confidence 345556666777777776665677888888888884 4555543 45566688888888 45655554 44477888888
Q ss_pred ecCccccCcchh-hhcCCCCcEEeccCC
Q 026675 112 LEGTAIRGLPAS-IELLSGNVLLNLKDC 138 (235)
Q Consensus 112 l~~~~~~~l~~~-~~~l~~L~~L~l~~~ 138 (235)
+++|.+..+... ...+.+++.++++++
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCC
Confidence 888877765543 466667777767664
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=8.4e-06 Score=46.57 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=12.9
Q ss_pred CceEEecCccccCcchhhhcCCCCcEEeccC
Q 026675 107 LLEIHLEGTAIRGLPASIELLSGNVLLNLKD 137 (235)
Q Consensus 107 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~ 137 (235)
|++|++++|.++.+|..+..+++|+.|++++
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence 4444444444444443344444444444444
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.6e-05 Score=45.45 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=20.3
Q ss_pred CccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 153 SLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 153 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
+|++|++++| .++.+|..++.+++|+.|++++|+
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCC
Confidence 4666666665 455666556666666666666665
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.90 E-value=1.8e-07 Score=82.57 Aligned_cols=113 Identities=27% Similarity=0.239 Sum_probs=59.9
Q ss_pred CcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCccccCcchhhhcCCCCcEEeccCCCCccccchhhh
Q 026675 70 LERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTIN 149 (235)
Q Consensus 70 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 149 (235)
+..+...+.-++.|+.|+|++ ++++... .+..+++|.+||+++|.+..+|.--..-..|+.|++++ +.++.+.. +.
T Consensus 176 L~~mD~SLqll~ale~LnLsh-Nk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~g-ie 251 (1096)
T KOG1859|consen 176 LVLMDESLQLLPALESLNLSH-NKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-NALTTLRG-IE 251 (1096)
T ss_pred HHhHHHHHHHHHHhhhhccch-hhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc-cHHHhhhh-HH
Confidence 333344444456666666666 3344343 45556666666666666665554322222266666665 45555544 56
Q ss_pred ccCCccEEcccCccCCCccch--hccCCCCCceeeccccc
Q 026675 150 RLRSLRMLHLSSCFKLKNAPE--TLGKVESLEYCITSMCI 187 (235)
Q Consensus 150 ~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~ 187 (235)
++.+|+.||++.| .+....+ -+..+..|+.|.+.+|.
T Consensus 252 ~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6666666666665 2222211 12344556666666665
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.89 E-value=1.7e-06 Score=61.54 Aligned_cols=105 Identities=15% Similarity=0.222 Sum_probs=76.3
Q ss_pred hhhcccCccccchh---hhhccCCcEEeecCCcCCccccccccc-CCccCeeeccccccccccCCCCCCCCCCceEEecC
Q 026675 39 VLWDGIDTRELSFA---IELLFRLVQLTLNGCKNLERLPRTTSA-LKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEG 114 (235)
Q Consensus 39 ~~l~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 114 (235)
+.++.+.+..++.. +.....|+..++++| .+..+|+.|.. ++.++.++++. +.+.++|+.+..|+.|+.++++.
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhccccc
Confidence 44555655555544 344556666788885 46677765554 55788889988 67888888788899999999999
Q ss_pred ccccCcchhhhcCCCCcEEeccCCCCccccch
Q 026675 115 TAIRGLPASIELLSGNVLLNLKDCMNLKSLPS 146 (235)
Q Consensus 115 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~ 146 (235)
|.+...|+.+..+.++..|+..+ +....++-
T Consensus 110 N~l~~~p~vi~~L~~l~~Lds~~-na~~eid~ 140 (177)
T KOG4579|consen 110 NPLNAEPRVIAPLIKLDMLDSPE-NARAEIDV 140 (177)
T ss_pred CccccchHHHHHHHhHHHhcCCC-CccccCcH
Confidence 98888888888888888888776 45555553
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.89 E-value=8.2e-06 Score=73.85 Aligned_cols=149 Identities=16% Similarity=0.114 Sum_probs=98.8
Q ss_pred CccCeeeccccccc-cccCCCCC-CCCCCceEEecCcccc--CcchhhhcCCCCcEEeccCCCCccccchhhhccCCccE
Q 026675 81 KYLSTLNLSSLLKF-REFPEKTS-GKDQLLEIHLEGTAIR--GLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRM 156 (235)
Q Consensus 81 ~~L~~L~l~~~~~~-~~~p~~~~-~l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 156 (235)
.+|+.|++++...+ ..+|..++ .+|+|+.|.+.+-.+. ++..-...+++|..||+++ .++..+ ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-HHHhccccHHH
Confidence 57999999985433 33443333 5899999999887665 4556667899999999999 577777 44899999999
Q ss_pred EcccCccCCC-ccchhccCCCCCceeeccccccccccccCCCCcccccCcCcccccccchhhhhccchhhHHhhhhCC
Q 026675 157 LHLSSCFKLK-NAPETLGKVESLEYCITSMCILINVVRQKDSDSWKKNVDKGIKLSTTAISACSLACHWLIQTSRAMP 233 (235)
Q Consensus 157 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~l~~l~~~~~~~~~~~l~~l~~~~~ 233 (235)
|.+.+-...+ .--..+..+++|+.||++.......-. +. ...++--..+++|+.+|.++..-+-.-+..+...+|
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~-ii-~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK-II-EQYLECGMVLPELRFLDCSGTDINEEILEELLNSHP 275 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchH-HH-HHHHHhcccCccccEEecCCcchhHHHHHHHHHhCc
Confidence 9988753222 112356789999999999987543221 00 111111123667888888766555555555555544
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.88 E-value=2.5e-06 Score=73.18 Aligned_cols=106 Identities=25% Similarity=0.222 Sum_probs=50.4
Q ss_pred cccCCccCeeeccccccccccCCCCCCCCCCceEEecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccE
Q 026675 77 TSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRM 156 (235)
Q Consensus 77 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 156 (235)
+..+.+|..|++.+ +.++.+...+..+++|++|++++|.|+.+. ++..++.|+.|++.+ +.+..+.. +..++.|+.
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~-N~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG-NLISDISG-LESLKSLKL 166 (414)
T ss_pred cccccceeeeeccc-cchhhcccchhhhhcchheecccccccccc-chhhccchhhheecc-CcchhccC-Cccchhhhc
Confidence 34455555555555 334444433444555555555555555443 244444455555555 34444443 333555555
Q ss_pred EcccCccCCCccchh-ccCCCCCceeeccccc
Q 026675 157 LHLSSCFKLKNAPET-LGKVESLEYCITSMCI 187 (235)
Q Consensus 157 L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 187 (235)
+++++| .+..+... ...+..++.+++..|.
T Consensus 167 l~l~~n-~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 167 LDLSYN-RIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCCcc-hhhhhhhhhhhhccchHHHhccCCc
Confidence 555554 22333221 2344455555555554
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.72 E-value=1.9e-06 Score=61.26 Aligned_cols=88 Identities=13% Similarity=0.147 Sum_probs=74.5
Q ss_pred chhhhhhcccCccccchhhh-hccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEec
Q 026675 35 DIVQVLWDGIDTRELSFAIE-LLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLE 113 (235)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 113 (235)
.+..+.++++.+..+|+.|. +++.++.|++.+ +.+..+|..+..|+.|+.|+++. +.+..+|..+..+.++-+|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHhcCC
Confidence 44556789999999999876 567999999999 56889999999999999999999 5677788777779999999999
Q ss_pred CccccCcchhh
Q 026675 114 GTAIRGLPASI 124 (235)
Q Consensus 114 ~~~~~~l~~~~ 124 (235)
++....++..+
T Consensus 132 ~na~~eid~dl 142 (177)
T KOG4579|consen 132 ENARAEIDVDL 142 (177)
T ss_pred CCccccCcHHH
Confidence 99888877663
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.21 E-value=0.00011 Score=63.84 Aligned_cols=129 Identities=29% Similarity=0.319 Sum_probs=75.3
Q ss_pred hccCCcEEeecCCcCCcc--cccccccCCccCeeeccc-cccccccC----CCCCCCCCCceEEecCcc-cc--Ccchhh
Q 026675 55 LLFRLVQLTLNGCKNLER--LPRTTSALKYLSTLNLSS-LLKFREFP----EKTSGKDQLLEIHLEGTA-IR--GLPASI 124 (235)
Q Consensus 55 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~-~~~~~~~p----~~~~~l~~L~~L~l~~~~-~~--~l~~~~ 124 (235)
.++.|+.+.+..|..+.. +-.....+++|+.|++++ +......+ .....+.+|+.|++.++. ++ .+....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 467777777777766654 333445577788888776 23222222 233346777778877776 55 233333
Q ss_pred hcCCCCcEEeccCCCCccc--cchhhhccCCccEEcccCccCCCc--cchhccCCCCCceeec
Q 026675 125 ELLSGNVLLNLKDCMNLKS--LPSTINRLRSLRMLHLSSCFKLKN--APETLGKVESLEYCIT 183 (235)
Q Consensus 125 ~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l 183 (235)
..+++|+.|.+.+|..+.. +-.....++.|++|+++.|..++. +.....++++++.+.+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 3477788887777765432 333455677788888887766533 2222334565555443
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.19 E-value=0.00088 Score=50.93 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=44.2
Q ss_pred ccCeeeccccccccccCCCCCCCCCCceEEecCccccCcchhhh-cCCCCcEEeccCCCCccccch--hhhccCCccEEc
Q 026675 82 YLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPASIE-LLSGNVLLNLKDCMNLKSLPS--TINRLRSLRMLH 158 (235)
Q Consensus 82 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~ 158 (235)
+...++++.| .+..++. +..++.|.+|.++.|+|+.+...+. .++++..|.+.+ +++..+.+ -...+|.|+.|.
T Consensus 43 ~~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceeccccc-chhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceee
Confidence 4445555552 2322222 3335555555555555554444433 334455555554 23332221 134455555555
Q ss_pred ccCccCCCccc----hhccCCCCCceeeccc
Q 026675 159 LSSCFKLKNAP----ETLGKVESLEYCITSM 185 (235)
Q Consensus 159 l~~~~~~~~~~----~~~~~l~~L~~L~l~~ 185 (235)
+-+|+.-. -. -.+..+++|++||++.
T Consensus 120 ll~Npv~~-k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence 55543211 11 1234555555555543
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.03 E-value=0.00076 Score=51.27 Aligned_cols=94 Identities=22% Similarity=0.233 Sum_probs=42.7
Q ss_pred hhcccCccccchhhhhccCCcEEeecCCcCCccccccccc-CCccCeeeccccccccccC--CCCCCCCCCceEEecCcc
Q 026675 40 LWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSA-LKYLSTLNLSSLLKFREFP--EKTSGKDQLLEIHLEGTA 116 (235)
Q Consensus 40 ~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~~~ 116 (235)
+++++.+..++ .|..++.|.+|.+++| .++.+.+.+.. ++.|+.|.+.+| .+..+. ..+..|+.|++|.+-+|.
T Consensus 48 DLtdNdl~~l~-~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 48 DLTDNDLRKLD-NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred cccccchhhcc-cCCCccccceEEecCC-cceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeecCCc
Confidence 34444443332 2334555555555553 34444333332 344555555553 233222 123345555555555555
Q ss_pred ccCcch----hhhcCCCCcEEecc
Q 026675 117 IRGLPA----SIELLSGNVLLNLK 136 (235)
Q Consensus 117 ~~~l~~----~~~~l~~L~~L~l~ 136 (235)
++.... .+..+++|++||+.
T Consensus 125 v~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 125 VEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred hhcccCceeEEEEecCcceEeehh
Confidence 553322 23445555555554
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=5.7e-05 Score=60.05 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=64.8
Q ss_pred cchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCC--CCCCCCCCceEE
Q 026675 34 PDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPE--KTSGKDQLLEIH 111 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~ 111 (235)
..++.+.++|+++..+.- ..+|+.|++|.|+-| .++.+.+ +..|..|++|+|+. +.+.++.+ -+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHHH-HHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHh
Confidence 345667788888776542 246888888888884 4665554 66788888888888 55655543 345678888888
Q ss_pred ecCccccC-cc-----hhhhcCCCCcEEe
Q 026675 112 LEGTAIRG-LP-----ASIELLSGNVLLN 134 (235)
Q Consensus 112 l~~~~~~~-l~-----~~~~~l~~L~~L~ 134 (235)
|..|...+ -+ ..+..+++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 88876542 11 1355667776664
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.88 E-value=0.00078 Score=53.02 Aligned_cols=106 Identities=21% Similarity=0.196 Sum_probs=64.6
Q ss_pred hccCCcEEeecCCcCCcccccccccCCccCeeecccc--ccccccCCCCCCCCCCceEEecCccccCcc--hhhhcCCCC
Q 026675 55 LLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSL--LKFREFPEKTSGKDQLLEIHLEGTAIRGLP--ASIELLSGN 130 (235)
Q Consensus 55 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~--~~~~~l~~L 130 (235)
.+..|+.|.+.++. ++.+. .+..+++|+.|.++.| .....++.....+++|++++++.|.+..+. ..+..+.+|
T Consensus 41 ~~~~le~ls~~n~g-ltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccc-eeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 44555666555543 22222 2344778888888887 333445544556688888888888777422 235667777
Q ss_pred cEEeccCCCCcc--ccc-hhhhccCCccEEcccCc
Q 026675 131 VLLNLKDCMNLK--SLP-STINRLRSLRMLHLSSC 162 (235)
Q Consensus 131 ~~L~l~~~~~l~--~l~-~~~~~~~~L~~L~l~~~ 162 (235)
.+|++.+|.... ... ..|..+++|++||--..
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 888888775443 122 24566778888775443
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.83 E-value=0.00026 Score=59.24 Aligned_cols=134 Identities=20% Similarity=0.198 Sum_probs=67.0
Q ss_pred CCccCeeeccccccccccC--CCCCCCCCCceEEecCcc-cc--CcchhhhcCCCCcEEeccCCCCcccc--chhhhccC
Q 026675 80 LKYLSTLNLSSLLKFREFP--EKTSGKDQLLEIHLEGTA-IR--GLPASIELLSGNVLLNLKDCMNLKSL--PSTINRLR 152 (235)
Q Consensus 80 l~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~~~-~~--~l~~~~~~l~~L~~L~l~~~~~l~~l--~~~~~~~~ 152 (235)
+..|++|..++|..+++.+ .-...+.+|+++.+..|. ++ .+..--..+..|+.+++..|....+. ...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 4455666666655544433 112235566666666652 33 22322334555666666655544332 22234566
Q ss_pred CccEEcccCccCCCcc-----chhccCCCCCceeeccccccccccccCCCCcccccCcCcccccccchhhhhc
Q 026675 153 SLRMLHLSSCFKLKNA-----PETLGKVESLEYCITSMCILINVVRQKDSDSWKKNVDKGIKLSTTAISACSL 220 (235)
Q Consensus 153 ~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~l~~l~~~~~~~ 220 (235)
.|+.+.+++|..+++- ...-.....|..+.+++|+.+. -..++.|.+|.+++..++..|..
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~-------d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT-------DATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch-------HHHHHHHhhCcccceeeeechhh
Confidence 6666666666544432 2222234455666666665322 22445555566666666665544
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.00017 Score=57.45 Aligned_cols=99 Identities=21% Similarity=0.232 Sum_probs=75.0
Q ss_pred ccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCccccCcch--hhhcCCCCcEE
Q 026675 56 LFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPA--SIELLSGNVLL 133 (235)
Q Consensus 56 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L 133 (235)
+.+.+.|++.+|. +..+.- ...|+.|++|.|+- ++++.+.. +..|..|+.|.++.|.|..+.+ .+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSv-NkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSV-NKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCC-ccHHHH-HHhcccceeEEeec-cccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 5677888888875 444442 45699999999999 66776665 6679999999999998886654 46788999999
Q ss_pred eccCCCCccccch-----hhhccCCccEEc
Q 026675 134 NLKDCMNLKSLPS-----TINRLRSLRMLH 158 (235)
Q Consensus 134 ~l~~~~~l~~l~~-----~~~~~~~L~~L~ 158 (235)
+|..|+....-+. .+.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9998887765543 244577777776
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.52 E-value=0.0015 Score=56.79 Aligned_cols=126 Identities=22% Similarity=0.251 Sum_probs=75.8
Q ss_pred ccchhhhhhcccC-ccc--cchhhhhccCCcEEeecC-CcCCcccc----cccccCCccCeeeccccccccccC--CCCC
Q 026675 33 FPDIVQVLWDGID-TRE--LSFAIELLFRLVQLTLNG-CKNLERLP----RTTSALKYLSTLNLSSLLKFREFP--EKTS 102 (235)
Q Consensus 33 ~~~l~~~~l~~~~-~~~--~~~~l~~l~~L~~L~l~~-~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~p--~~~~ 102 (235)
.+.++.+.+.++. +.. +-+....+++|+.|++++ |......+ .....+.+|+.|+++++..+++.- ....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 3455555555432 222 334556788999999987 33333222 223446788899998876544322 2222
Q ss_pred CCCCCceEEecCcc-cc--CcchhhhcCCCCcEEeccCCCCccc--cchhhhccCCccEEc
Q 026675 103 GKDQLLEIHLEGTA-IR--GLPASIELLSGNVLLNLKDCMNLKS--LPSTINRLRSLRMLH 158 (235)
Q Consensus 103 ~l~~L~~L~l~~~~-~~--~l~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~ 158 (235)
.+++|+.|.+..|. ++ ++......+++|+.|+++.|..+.+ +.....++++++.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 37889998877775 55 4555667788899999988877633 222234455554444
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.40 E-value=0.00074 Score=56.60 Aligned_cols=136 Identities=20% Similarity=0.213 Sum_probs=94.8
Q ss_pred hhccCCcEEeecCCcCCccccc--ccccCCccCeeeccccccccc--cCCCCCCCCCCceEEecCcccc---Ccchhhhc
Q 026675 54 ELLFRLVQLTLNGCKNLERLPR--TTSALKYLSTLNLSSLLKFRE--FPEKTSGKDQLLEIHLEGTAIR---GLPASIEL 126 (235)
Q Consensus 54 ~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~---~l~~~~~~ 126 (235)
.++..|+.|+.++|..++..+. ...+..+|+++.+++|+.++. +..--.++++|+.+++..+... .+......
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 3578888999888877654321 234578999999999987654 2233346888999999888433 24444567
Q ss_pred CCCCcEEeccCCCCcccc-----chhhhccCCccEEcccCccCCCc-cchhccCCCCCceeeccccccc
Q 026675 127 LSGNVLLNLKDCMNLKSL-----PSTINRLRSLRMLHLSSCFKLKN-APETLGKVESLEYCITSMCILI 189 (235)
Q Consensus 127 l~~L~~L~l~~~~~l~~l-----~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~ 189 (235)
++.|+.+.++.|..+.+. ......+..|..+.+++|+.+.+ ..+-+..+++|+.+++-.|+.+
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 888999988888776554 22234567788899999877654 3344667888888888877754
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.0019 Score=52.14 Aligned_cols=18 Identities=22% Similarity=-0.062 Sum_probs=9.8
Q ss_pred ccCCCCCceeeccccccc
Q 026675 172 LGKVESLEYCITSMCILI 189 (235)
Q Consensus 172 ~~~l~~L~~L~l~~~~~~ 189 (235)
+.++++|+.|.+.++...
T Consensus 245 Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPLS 262 (418)
T ss_pred HcCCchhheeeccCCccc
Confidence 445555666655555543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.04 E-value=0.0049 Score=48.61 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=64.5
Q ss_pred CCccCeeeccccccccccCCCCCCCCCCceEEecCc--ccc-CcchhhhcCCCCcEEeccCCCCcc---ccchhhhccCC
Q 026675 80 LKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGT--AIR-GLPASIELLSGNVLLNLKDCMNLK---SLPSTINRLRS 153 (235)
Q Consensus 80 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~--~~~-~l~~~~~~l~~L~~L~l~~~~~l~---~l~~~~~~~~~ 153 (235)
+..|+.+.+..+. ++.+. .+..+++|+.|.++.| ++. +++.-+..+++|+++++++| .+. .++. ...+.+
T Consensus 42 ~~~le~ls~~n~g-ltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p-l~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVG-LTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP-LKELEN 117 (260)
T ss_pred ccchhhhhhhccc-eeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch-hhhhcc
Confidence 4445555555432 22222 2334889999999999 555 66666777799999999985 443 3333 566778
Q ss_pred ccEEcccCccCCCc--cc-hhccCCCCCceeeccc
Q 026675 154 LRMLHLSSCFKLKN--AP-ETLGKVESLEYCITSM 185 (235)
Q Consensus 154 L~~L~l~~~~~~~~--~~-~~~~~l~~L~~L~l~~ 185 (235)
|..|++.+|...+. -. ..+.-+++|++|+-..
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 88999999865441 11 2355667777775433
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.01 E-value=0.0063 Score=48.61 Aligned_cols=189 Identities=15% Similarity=0.062 Sum_probs=98.5
Q ss_pred hhhhhcccCccc-----cchhhhhccCCcEEeecCCcCCc----cc-------ccccccCCccCeeeccccccccccCCC
Q 026675 37 VQVLWDGIDTRE-----LSFAIELLFRLVQLTLNGCKNLE----RL-------PRTTSALKYLSTLNLSSLLKFREFPEK 100 (235)
Q Consensus 37 ~~~~l~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~----~~-------~~~~~~l~~L~~L~l~~~~~~~~~p~~ 100 (235)
..+.++|+.+.+ +...+.+-++|+..+++.- +.+ .+ .+.+-.||.|+..+++.|-+-..+|+.
T Consensus 33 ~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~ 111 (388)
T COG5238 33 VEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEE 111 (388)
T ss_pred eEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchH
Confidence 345566666532 2333444566666666552 221 11 122345778888888886555555542
Q ss_pred ----CCCCCCCceEEecCccccC-----cchh---------hhcCCCCcEEeccCCCCccccch-----hhhccCCccEE
Q 026675 101 ----TSGKDQLLEIHLEGTAIRG-----LPAS---------IELLSGNVLLNLKDCMNLKSLPS-----TINRLRSLRML 157 (235)
Q Consensus 101 ----~~~l~~L~~L~l~~~~~~~-----l~~~---------~~~l~~L~~L~l~~~~~l~~l~~-----~~~~~~~L~~L 157 (235)
+..-..|.+|.+++|.+.- +.+. +..-+.|++...++ +++...|. .+..=..|+.+
T Consensus 112 L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a~~l~sh~~lk~v 190 (388)
T COG5238 112 LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSAALLESHENLKEV 190 (388)
T ss_pred HHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHHHHHHhhcCceeE
Confidence 3345667778787775541 1111 23345677776666 34443332 11111457777
Q ss_pred cccCccCCCc-----cchhccCCCCCceeeccccccccccccCCCCcccccCcCcccccccchhhhhccchhhHHhhhh
Q 026675 158 HLSSCFKLKN-----APETLGKVESLEYCITSMCILINVVRQKDSDSWKKNVDKGIKLSTTAISACSLACHWLIQTSRA 231 (235)
Q Consensus 158 ~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~l~~l~~~~~~~~~~~l~~l~~~ 231 (235)
.+..|..-.. +-..+..+.+|+.|++..|.+. -....---..+..++.|+++.+..|...-.+.....+.
T Consensus 191 ki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft----~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 191 KIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT----LEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred EeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh----hhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 7777643221 1123456788888888888732 11110001123445556777777776655555554443
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.93 E-value=0.039 Score=38.79 Aligned_cols=102 Identities=13% Similarity=0.204 Sum_probs=42.7
Q ss_pred hhhhccCCcEEeecCCcCCccccc-ccccCCccCeeeccccccccccC-CCCCCCCCCceEEecCccccCcch-hhhcCC
Q 026675 52 AIELLFRLVQLTLNGCKNLERLPR-TTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIHLEGTAIRGLPA-SIELLS 128 (235)
Q Consensus 52 ~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~ 128 (235)
.|.++.+|+.+.+.. .+..++. .+..+.+|+.+.+.. . +..++ ..+..+++++.+.+.. .+..++. .+..++
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN-N-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS-T-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhcccccccccccccc-c-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 345566677766654 2334432 355566677776655 2 44444 3455565667776654 3333332 233466
Q ss_pred CCcEEeccCCCCccccc-hhhhccCCccEEcccC
Q 026675 129 GNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSS 161 (235)
Q Consensus 129 ~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~ 161 (235)
+++.+.+.. .+..++ ..+.++ .++.+.+..
T Consensus 82 ~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 666666643 243443 234444 566665543
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.83 E-value=0.0076 Score=48.17 Aligned_cols=58 Identities=24% Similarity=0.378 Sum_probs=30.3
Q ss_pred CCCceEEecCcccc--Ccc----hhhhcCCCCcEEeccCCCCcc----ccchhhhccCCccEEcccCc
Q 026675 105 DQLLEIHLEGTAIR--GLP----ASIELLSGNVLLNLKDCMNLK----SLPSTINRLRSLRMLHLSSC 162 (235)
Q Consensus 105 ~~L~~L~l~~~~~~--~l~----~~~~~l~~L~~L~l~~~~~l~----~l~~~~~~~~~L~~L~l~~~ 162 (235)
..|.++.+.+|.|. ++. .++.++++|++|++.+|.... .+..+...++.|+.|.+..|
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 45556666666554 111 234566667777776643221 12233444555666766666
No 69
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.0099 Score=48.12 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=47.2
Q ss_pred cccchhhhhhcccCccc---cchhhhhccCCcEEeecCCcCCccccccc-ccCCccCeeeccccccc-cccCCCCCCCCC
Q 026675 32 KFPDIVQVLWDGIDTRE---LSFAIELLFRLVQLTLNGCKNLERLPRTT-SALKYLSTLNLSSLLKF-REFPEKTSGKDQ 106 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~-~~~p~~~~~l~~ 106 (235)
...+++.+++.++.+.. +...+.+++.|+.|+++.|..-..+ ..+ ....+|++|-+.+..-. +.....+..++.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 45567778888887754 3445568999999999986532221 112 23556777766663211 112233444555
Q ss_pred CceEEecCc
Q 026675 107 LLEIHLEGT 115 (235)
Q Consensus 107 L~~L~l~~~ 115 (235)
++.|+++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 555555555
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=0.0035 Score=47.71 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=58.4
Q ss_pred CCceEEecCcccc-CcchhhhcCCCCcEEeccCCCCccccc--hhhhccCCccEEcccCccCCCccc-hhccCCCCCcee
Q 026675 106 QLLEIHLEGTAIR-GLPASIELLSGNVLLNLKDCMNLKSLP--STINRLRSLRMLHLSSCFKLKNAP-ETLGKVESLEYC 181 (235)
Q Consensus 106 ~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~l~~l~--~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L 181 (235)
.++.++.+++.|. +--..+..+++++.|.+.+|..+.+-. ..-+-.++|+.|++++|+.+++.. ..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3667777777776 333457888899999999998886532 212246789999999999888754 346678888888
Q ss_pred ecccc
Q 026675 182 ITSMC 186 (235)
Q Consensus 182 ~l~~~ 186 (235)
.+.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 76653
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.36 E-value=0.0082 Score=28.53 Aligned_cols=7 Identities=43% Similarity=0.529 Sum_probs=2.9
Q ss_pred Ceeeccc
Q 026675 84 STLNLSS 90 (235)
Q Consensus 84 ~~L~l~~ 90 (235)
++|++++
T Consensus 3 ~~Ldls~ 9 (22)
T PF00560_consen 3 EYLDLSG 9 (22)
T ss_dssp SEEEETS
T ss_pred cEEECCC
Confidence 3444444
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.52 E-value=0.13 Score=36.11 Aligned_cols=110 Identities=13% Similarity=0.203 Sum_probs=55.3
Q ss_pred hhhhhhcccCccccch-hhhhccCCcEEeecCCcCCccccc-ccccCCccCeeeccccccccccC-CCCCCCCCCceEEe
Q 026675 36 IVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPR-TTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIHL 112 (235)
Q Consensus 36 l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l 112 (235)
++.+.+.. .+..++. .|.++++|+.+.+.. + +..++. .+..+++++.+.+.. .+..++ ..+..+++|+.+.+
T Consensus 14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 14 LESITFPN-TIKKIGENAFSNCTSLKSINFPN-N-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp --EEEETS-T--EE-TTTTTT-TT-SEEEESS-T-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEE
T ss_pred CCEEEECC-CeeEeChhhcccccccccccccc-c-ccccceeeeecccccccccccc--ccccccccccccccccccccc
Confidence 34455543 4556655 677888999999987 3 555543 467787899999965 344444 45667999999999
Q ss_pred cCccccCcchh-hhcCCCCcEEeccCCCCccccc-hhhhccCCc
Q 026675 113 EGTAIRGLPAS-IELLSGNVLLNLKDCMNLKSLP-STINRLRSL 154 (235)
Q Consensus 113 ~~~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L 154 (235)
..+ +..++.. +... +++.+.+.. .+..++ ..|.++++|
T Consensus 89 ~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred Ccc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 765 5544443 4454 888887764 444444 456666555
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.25 E-value=0.036 Score=24.50 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=5.0
Q ss_pred CCceEEecCccccC
Q 026675 106 QLLEIHLEGTAIRG 119 (235)
Q Consensus 106 ~L~~L~l~~~~~~~ 119 (235)
+|+.|++++|.++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444443
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.32 E-value=0.2 Score=24.52 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=11.4
Q ss_pred CCCceEEecCccccCcchh
Q 026675 105 DQLLEIHLEGTAIRGLPAS 123 (235)
Q Consensus 105 ~~L~~L~l~~~~~~~l~~~ 123 (235)
++|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666665554
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.32 E-value=0.2 Score=24.52 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=11.4
Q ss_pred CCCceEEecCccccCcchh
Q 026675 105 DQLLEIHLEGTAIRGLPAS 123 (235)
Q Consensus 105 ~~L~~L~l~~~~~~~l~~~ 123 (235)
++|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666665554
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.59 E-value=0.1 Score=39.89 Aligned_cols=61 Identities=25% Similarity=0.230 Sum_probs=39.7
Q ss_pred CCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccc-hhc-cCCCCCceeeccccccc
Q 026675 129 GNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAP-ETL-GKVESLEYCITSMCILI 189 (235)
Q Consensus 129 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~-~~l~~L~~L~l~~~~~~ 189 (235)
.++.++-+++.-...--+-+.+++.++.|.+.+|..+.+.- +.+ +..++|+.|++++|..+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rI 164 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRI 164 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCee
Confidence 35666666543332222346677888888898987776422 222 35689999999999864
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.36 E-value=0.015 Score=45.44 Aligned_cols=82 Identities=18% Similarity=0.151 Sum_probs=35.7
Q ss_pred hhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCccccCcchhhhcCCCCcEE
Q 026675 54 ELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPASIELLSGNVLL 133 (235)
Q Consensus 54 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L 133 (235)
..++..+.||++.+ .+......++-+..|..|+++. +.+..+|+.++....++.+++..|..+..|...+..+.++++
T Consensus 39 ~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hccceeeeehhhhh-HHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 34445555555542 2333333333344444444444 334444444444444444444444444444444444444444
Q ss_pred eccC
Q 026675 134 NLKD 137 (235)
Q Consensus 134 ~l~~ 137 (235)
+.-+
T Consensus 117 e~k~ 120 (326)
T KOG0473|consen 117 EQKK 120 (326)
T ss_pred hhcc
Confidence 4433
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.92 E-value=0.024 Score=44.35 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=39.5
Q ss_pred CCccCeeeccccccccccCCCCCCCCCCceEEecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcc
Q 026675 80 LKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHL 159 (235)
Q Consensus 80 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 159 (235)
++..+.|+++. +.+..+...+..+..|..|+++.+.+..+|+..+....+..+++.. ++....|.+++..++++.++.
T Consensus 41 ~kr~tvld~~s-~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 41 FKRVTVLDLSS-NRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred cceeeeehhhh-hHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhhh
Confidence 44455555555 2233333334444445555555555555555555544444444443 445555555555555555555
Q ss_pred cCc
Q 026675 160 SSC 162 (235)
Q Consensus 160 ~~~ 162 (235)
-.+
T Consensus 119 k~~ 121 (326)
T KOG0473|consen 119 KKT 121 (326)
T ss_pred ccC
Confidence 444
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.41 E-value=0.9 Score=22.22 Aligned_cols=15 Identities=40% Similarity=0.682 Sum_probs=8.7
Q ss_pred CCccEEcccCccCCC
Q 026675 152 RSLRMLHLSSCFKLK 166 (235)
Q Consensus 152 ~~L~~L~l~~~~~~~ 166 (235)
++|+.|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 456666666665544
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.26 E-value=1.2 Score=21.16 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=6.8
Q ss_pred CCCceEEecCcccc
Q 026675 105 DQLLEIHLEGTAIR 118 (235)
Q Consensus 105 ~~L~~L~l~~~~~~ 118 (235)
++|+.|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45566666666544
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.90 E-value=1.7 Score=21.50 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=10.8
Q ss_pred CCceEEecCccccCcch
Q 026675 106 QLLEIHLEGTAIRGLPA 122 (235)
Q Consensus 106 ~L~~L~l~~~~~~~l~~ 122 (235)
+|+.|++++|.++.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46666666666666664
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=69.84 E-value=0.086 Score=46.16 Aligned_cols=18 Identities=39% Similarity=0.379 Sum_probs=10.4
Q ss_pred hhhhhccCCcEEeecCCc
Q 026675 51 FAIELLFRLVQLTLNGCK 68 (235)
Q Consensus 51 ~~l~~l~~L~~L~l~~~~ 68 (235)
..+.....|..|++++|+
T Consensus 109 ~~l~t~~~L~~L~l~~n~ 126 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNN 126 (478)
T ss_pred HHhcccccHhHhhcccCC
Confidence 344455666666666654
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=65.64 E-value=0.23 Score=43.51 Aligned_cols=170 Identities=21% Similarity=0.106 Sum_probs=91.7
Q ss_pred CcEEeecCCcCCc----ccccccccCCccCeeeccccccccc----cCCCCCCC-CCCceEEecCcccc-----Ccchhh
Q 026675 59 LVQLTLNGCKNLE----RLPRTTSALKYLSTLNLSSLLKFRE----FPEKTSGK-DQLLEIHLEGTAIR-----GLPASI 124 (235)
Q Consensus 59 L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~l-~~L~~L~l~~~~~~-----~l~~~~ 124 (235)
+..+.+.+|.... .+...+...+.|..|++++|..... +-+.+... ..+++|++..|.++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6667777765322 2223455677888888888654321 11222222 45677777777665 234445
Q ss_pred hcCCCCcEEeccCCCCcc----ccchh----hhccCCccEEcccCccCCC----ccchhccCCCC-Cceeeccccccccc
Q 026675 125 ELLSGNVLLNLKDCMNLK----SLPST----INRLRSLRMLHLSSCFKLK----NAPETLGKVES-LEYCITSMCILINV 191 (235)
Q Consensus 125 ~~l~~L~~L~l~~~~~l~----~l~~~----~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~-L~~L~l~~~~~~~~ 191 (235)
.....++.+++..|.... .++.. +....++++|++.+|.... .+...+...+. ++.+++..|..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l--- 245 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL--- 245 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc---
Confidence 556777777777655431 12222 3346678888888874322 12334455555 66677777772
Q ss_pred cccCCCCcccccCcCc-ccccccchhhhhccchhhHHhhhhC
Q 026675 192 VRQKDSDSWKKNVDKG-IKLSTTAISACSLACHWLIQTSRAM 232 (235)
Q Consensus 192 ~~~~~~~~~l~~L~~~-~~l~~l~~~~~~~~~~~l~~l~~~~ 232 (235)
.+...-...+.+... ..++.++++.|+..-+...++...+
T Consensus 246 -~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l 286 (478)
T KOG4308|consen 246 -GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVL 286 (478)
T ss_pred -chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHH
Confidence 221111111222222 3456777777766666655555443
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.86 E-value=7 Score=19.28 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=7.6
Q ss_pred CCCceEEecCcccc
Q 026675 105 DQLLEIHLEGTAIR 118 (235)
Q Consensus 105 ~~L~~L~l~~~~~~ 118 (235)
.+|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555544
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.94 E-value=7.8 Score=19.24 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=9.3
Q ss_pred CCCceEEecCcccc
Q 026675 105 DQLLEIHLEGTAIR 118 (235)
Q Consensus 105 ~~L~~L~l~~~~~~ 118 (235)
++|++|++++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777664
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.69 E-value=21 Score=31.87 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=6.8
Q ss_pred CCCCCceEEecCc
Q 026675 103 GKDQLLEIHLEGT 115 (235)
Q Consensus 103 ~l~~L~~L~l~~~ 115 (235)
..++|.+|+|++|
T Consensus 242 ~apklk~L~LS~N 254 (585)
T KOG3763|consen 242 IAPKLKTLDLSHN 254 (585)
T ss_pred hcchhheeecccc
Confidence 3455555555555
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=28.65 E-value=21 Score=31.91 Aligned_cols=63 Identities=27% Similarity=0.272 Sum_probs=28.9
Q ss_pred hccCCcEEeecCCcC--CcccccccccCCccCeeeccccc-cccccCC--CCCCCCCCceEEecCcccc
Q 026675 55 LLFRLVQLTLNGCKN--LERLPRTTSALKYLSTLNLSSLL-KFREFPE--KTSGKDQLLEIHLEGTAIR 118 (235)
Q Consensus 55 ~l~~L~~L~l~~~~~--~~~~~~~~~~l~~L~~L~l~~~~-~~~~~p~--~~~~l~~L~~L~l~~~~~~ 118 (235)
+.+.+..+++++|.. +..+...-...|.|+.|+|++|. .+...++ .++ ..-|+.|.+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCccc
Confidence 445555666666431 11222222335667777777642 2221111 122 233666666666554
Done!