Query 026675
Match_columns 235
No_of_seqs 125 out of 1697
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 19:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026675.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026675hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 1.8E-21 6.2E-26 160.3 13.8 160 31-192 101-269 (328)
2 4fcg_A Uncharacterized protein 99.9 3.9E-21 1.3E-25 158.3 12.3 161 31-192 124-293 (328)
3 1ogq_A PGIP-2, polygalacturona 99.8 3.9E-19 1.3E-23 145.3 10.3 153 34-187 50-208 (313)
4 1ozn_A Reticulon 4 receptor; N 99.8 2E-18 6.8E-23 139.1 12.8 152 34-187 32-188 (285)
5 4ezg_A Putative uncharacterize 99.8 6.4E-18 2.2E-22 129.0 12.0 129 54-187 41-170 (197)
6 1ogq_A PGIP-2, polygalacturona 99.8 4.7E-18 1.6E-22 138.9 11.4 155 32-187 74-232 (313)
7 2o6q_A Variable lymphocyte rec 99.8 2.4E-17 8.2E-22 131.9 14.9 177 34-222 37-219 (270)
8 1ozn_A Reticulon 4 receptor; N 99.7 2E-17 6.8E-22 133.2 14.0 183 31-222 53-239 (285)
9 3m19_A Variable lymphocyte rec 99.7 3.5E-17 1.2E-21 129.5 15.0 147 37-187 17-166 (251)
10 1p9a_G Platelet glycoprotein I 99.7 1.7E-17 5.8E-22 134.2 13.4 174 34-222 31-209 (290)
11 3zyj_A Leucine-rich repeat-con 99.7 1.9E-17 6.6E-22 141.3 13.5 181 32-222 86-293 (440)
12 3rfs_A Internalin B, repeat mo 99.7 4.5E-17 1.5E-21 130.4 14.8 150 32-187 39-192 (272)
13 3zyi_A Leucine-rich repeat-con 99.7 2.8E-17 9.6E-22 140.7 14.1 180 33-222 98-304 (452)
14 3o6n_A APL1; leucine-rich repe 99.7 3.3E-17 1.1E-21 137.6 14.3 104 125-233 245-364 (390)
15 2z66_A Variable lymphocyte rec 99.7 1.7E-17 5.9E-22 134.9 11.6 154 32-187 50-210 (306)
16 3vq2_A TLR4, TOLL-like recepto 99.7 1.2E-17 4E-22 147.8 11.2 181 32-222 348-559 (606)
17 3rgz_A Protein brassinosteroid 99.7 3E-17 1E-21 149.1 13.8 156 33-188 465-692 (768)
18 3oja_B Anopheles plasmodium-re 99.7 4.4E-17 1.5E-21 144.2 14.3 101 126-231 252-368 (597)
19 2z62_A TOLL-like receptor 4, v 99.7 6E-17 2E-21 129.8 13.2 127 35-163 29-160 (276)
20 3rgz_A Protein brassinosteroid 99.7 4.1E-17 1.4E-21 148.3 13.3 91 49-139 458-549 (768)
21 1h6u_A Internalin H; cell adhe 99.7 8.4E-17 2.9E-21 131.2 13.7 145 33-187 40-184 (308)
22 2z66_A Variable lymphocyte rec 99.7 4E-17 1.4E-21 132.7 11.3 152 34-187 78-234 (306)
23 2xwt_C Thyrotropin receptor; s 99.7 2.1E-17 7.2E-22 129.8 9.3 151 35-187 32-190 (239)
24 3rfs_A Internalin B, repeat mo 99.7 1.9E-16 6.4E-21 126.8 14.9 154 31-189 60-218 (272)
25 3m19_A Variable lymphocyte rec 99.7 1.4E-16 4.7E-21 126.1 13.7 152 34-188 35-191 (251)
26 2ast_B S-phase kinase-associat 99.7 7.8E-18 2.7E-22 138.4 6.5 180 32-218 91-282 (336)
27 1h6u_A Internalin H; cell adhe 99.7 1.5E-16 5.2E-21 129.7 14.0 147 31-187 60-206 (308)
28 1h6t_A Internalin B; cell adhe 99.7 1.8E-16 6.3E-21 128.2 13.7 146 32-187 44-189 (291)
29 4eco_A Uncharacterized protein 99.7 6.7E-18 2.3E-22 150.5 4.9 155 31-187 203-388 (636)
30 2z62_A TOLL-like receptor 4, v 99.7 1.1E-16 3.7E-21 128.3 11.3 181 32-222 50-238 (276)
31 3zyi_A Leucine-rich repeat-con 99.7 1.4E-16 4.8E-21 136.4 12.6 152 34-188 75-230 (452)
32 4eco_A Uncharacterized protein 99.7 3.5E-17 1.2E-21 145.8 8.8 157 35-193 82-347 (636)
33 1xeu_A Internalin C; cellular 99.7 2.3E-16 7.7E-21 125.8 12.4 144 33-187 40-183 (263)
34 3zyj_A Leucine-rich repeat-con 99.7 2.4E-16 8.1E-21 134.5 13.3 152 34-188 64-219 (440)
35 1p9a_G Platelet glycoprotein I 99.7 4.7E-16 1.6E-20 125.7 14.4 150 33-187 54-206 (290)
36 2v9t_B SLIT homolog 2 protein 99.7 3.7E-16 1.3E-20 121.3 13.0 146 38-188 15-164 (220)
37 2o6q_A Variable lymphocyte rec 99.7 4.8E-16 1.6E-20 124.3 14.0 154 31-188 58-217 (270)
38 1xku_A Decorin; proteoglycan, 99.7 8.8E-16 3E-20 126.1 15.4 149 35-187 122-274 (330)
39 3v47_A TOLL-like receptor 5B a 99.7 6.1E-16 2.1E-20 132.2 14.7 117 98-222 292-409 (455)
40 1wwl_A Monocyte differentiatio 99.7 1.6E-16 5.4E-21 129.7 10.2 150 35-187 122-285 (312)
41 2id5_A Lingo-1, leucine rich r 99.7 5.5E-16 1.9E-20 133.4 14.1 179 35-222 153-334 (477)
42 4ecn_A Leucine-rich repeat pro 99.7 3.7E-17 1.3E-21 149.6 7.1 154 31-187 445-630 (876)
43 4fmz_A Internalin; leucine ric 99.7 6E-16 2.1E-20 127.7 13.7 147 32-187 42-188 (347)
44 2z80_A TOLL-like receptor 2, v 99.7 2.1E-17 7.2E-22 137.1 4.9 152 35-187 53-209 (353)
45 4ezg_A Putative uncharacterize 99.7 5.7E-16 2E-20 118.1 12.5 151 31-187 41-192 (197)
46 3t6q_A CD180 antigen; protein- 99.7 4.4E-16 1.5E-20 137.6 13.2 130 33-162 277-410 (606)
47 3e6j_A Variable lymphocyte rec 99.7 8E-16 2.7E-20 120.1 13.1 147 37-188 22-171 (229)
48 2z80_A TOLL-like receptor 2, v 99.7 1.5E-16 5.2E-21 131.9 9.3 178 36-223 102-316 (353)
49 3o6n_A APL1; leucine-rich repe 99.7 5.4E-16 1.8E-20 130.2 12.7 151 32-187 43-197 (390)
50 1m9s_A Internalin B; cell inva 99.7 1.1E-15 3.8E-20 135.1 14.7 146 32-187 41-186 (605)
51 2z63_A TOLL-like receptor 4, v 99.7 3.8E-16 1.3E-20 136.9 11.4 183 31-222 344-532 (570)
52 2id5_A Lingo-1, leucine rich r 99.7 5.7E-16 2E-20 133.3 12.1 152 34-187 32-187 (477)
53 4ecn_A Leucine-rich repeat pro 99.7 2.7E-16 9.3E-21 143.9 9.7 115 73-188 440-585 (876)
54 2xwt_C Thyrotropin receptor; s 99.7 3.8E-16 1.3E-20 122.6 9.3 153 32-187 53-216 (239)
55 3v47_A TOLL-like receptor 5B a 99.7 4E-16 1.4E-20 133.3 10.2 154 34-187 30-191 (455)
56 2z7x_B TOLL-like receptor 1, v 99.6 7E-16 2.4E-20 134.0 11.8 158 54-222 321-482 (520)
57 4fmz_A Internalin; leucine ric 99.6 2.1E-15 7.2E-20 124.5 13.8 148 33-187 154-322 (347)
58 3vq2_A TLR4, TOLL-like recepto 99.6 6.2E-16 2.1E-20 136.7 11.2 155 32-188 326-485 (606)
59 2v70_A SLIT-2, SLIT homolog 2 99.6 2.3E-15 7.8E-20 116.9 13.1 146 38-188 15-165 (220)
60 2ft3_A Biglycan; proteoglycan, 99.6 1.5E-15 5.2E-20 124.8 12.8 147 34-187 102-275 (332)
61 3t6q_A CD180 antigen; protein- 99.6 1E-15 3.6E-20 135.3 12.6 155 34-188 350-512 (606)
62 3oja_B Anopheles plasmodium-re 99.6 1.6E-15 5.6E-20 134.1 13.6 39 149-187 251-289 (597)
63 2ast_B S-phase kinase-associat 99.6 1.2E-16 4.3E-21 131.2 5.9 179 34-219 70-258 (336)
64 3o53_A Protein LRIM1, AGAP0063 99.6 7.2E-16 2.5E-20 126.1 9.9 178 34-226 34-255 (317)
65 1xeu_A Internalin C; cellular 99.6 2.2E-15 7.6E-20 120.1 12.5 145 32-187 17-161 (263)
66 4glp_A Monocyte differentiatio 99.6 9.8E-16 3.3E-20 124.9 10.6 152 33-187 116-283 (310)
67 1h6t_A Internalin B; cell adhe 99.6 2.7E-15 9.1E-20 121.3 13.0 148 31-188 65-212 (291)
68 1xku_A Decorin; proteoglycan, 99.6 2.8E-15 9.5E-20 123.1 13.3 149 34-188 52-204 (330)
69 2ell_A Acidic leucine-rich nuc 99.6 3.6E-15 1.2E-19 110.7 12.4 129 55-187 22-158 (168)
70 2o6s_A Variable lymphocyte rec 99.6 7.4E-15 2.5E-19 112.8 14.0 144 39-188 12-160 (208)
71 2z81_A CD282 antigen, TOLL-lik 99.6 1.3E-15 4.6E-20 133.0 11.0 153 34-187 26-183 (549)
72 2xot_A Amphoterin-induced prot 99.6 1.8E-15 6.2E-20 125.9 10.8 145 38-187 22-174 (361)
73 1ziw_A TOLL-like receptor 3; i 99.6 2.5E-15 8.6E-20 134.6 12.4 153 34-188 25-183 (680)
74 3oja_A Leucine-rich immune mol 99.6 1.8E-15 6E-20 130.8 10.8 179 33-224 33-253 (487)
75 3j0a_A TOLL-like receptor 5; m 99.6 2.5E-15 8.7E-20 137.9 12.4 157 33-189 23-187 (844)
76 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 2.1E-15 7.1E-20 132.4 11.3 157 54-222 350-511 (562)
77 2ft3_A Biglycan; proteoglycan, 99.6 5.3E-15 1.8E-19 121.5 12.7 146 35-187 55-204 (332)
78 3e6j_A Variable lymphocyte rec 99.6 1.4E-14 4.6E-19 113.1 14.3 153 58-223 20-174 (229)
79 2z63_A TOLL-like receptor 4, v 99.6 2E-15 6.8E-20 132.4 10.4 157 32-189 371-531 (570)
80 1wwl_A Monocyte differentiatio 99.6 1.3E-15 4.4E-20 124.3 8.4 106 81-187 149-264 (312)
81 3bz5_A Internalin-J, INLJ; leu 99.6 8.6E-15 2.9E-19 125.6 13.3 142 32-187 40-181 (457)
82 1dce_A Protein (RAB geranylger 99.6 1.4E-16 4.9E-21 139.9 1.8 150 33-187 348-544 (567)
83 2z7x_B TOLL-like receptor 1, v 99.6 2.8E-15 9.6E-20 130.2 9.7 124 34-163 21-149 (520)
84 2ell_A Acidic leucine-rich nuc 99.6 3E-15 1E-19 111.1 8.1 133 34-170 24-164 (168)
85 2o6s_A Variable lymphocyte rec 99.6 7.8E-15 2.7E-19 112.6 10.6 150 33-192 27-181 (208)
86 3bz5_A Internalin-J, INLJ; leu 99.6 1.6E-14 5.5E-19 123.9 13.6 142 31-187 61-202 (457)
87 4g8a_A TOLL-like receptor 4; l 99.6 7.5E-15 2.6E-19 129.9 11.7 144 39-187 36-184 (635)
88 2z81_A CD282 antigen, TOLL-lik 99.6 6.6E-16 2.3E-20 134.9 4.8 152 34-187 50-207 (549)
89 2je0_A Acidic leucine-rich nuc 99.6 9.6E-15 3.3E-19 106.2 10.2 125 56-184 16-148 (149)
90 1m9s_A Internalin B; cell inva 99.6 2.2E-14 7.4E-19 126.9 14.1 148 31-188 62-209 (605)
91 1o6v_A Internalin A; bacterial 99.6 2.1E-14 7.1E-19 123.3 13.7 85 32-121 66-150 (466)
92 4glp_A Monocyte differentiatio 99.6 3.5E-15 1.2E-19 121.5 8.3 151 36-187 93-262 (310)
93 1o6v_A Internalin A; bacterial 99.6 3.6E-14 1.2E-18 121.9 14.3 103 78-187 240-342 (466)
94 3j0a_A TOLL-like receptor 5; m 99.6 1.3E-14 4.6E-19 133.1 11.5 147 39-188 9-160 (844)
95 1ziw_A TOLL-like receptor 3; i 99.6 1.1E-14 3.7E-19 130.4 10.6 147 38-188 8-157 (680)
96 3o53_A Protein LRIM1, AGAP0063 99.6 8E-15 2.7E-19 119.8 8.8 148 37-189 102-250 (317)
97 2v9t_B SLIT homolog 2 protein 99.6 8.7E-14 3E-18 107.9 13.7 150 60-222 14-166 (220)
98 4ay9_X Follicle-stimulating ho 99.5 1.3E-14 4.4E-19 120.2 9.3 153 34-187 30-213 (350)
99 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 2.1E-14 7.3E-19 126.0 11.1 144 37-188 34-181 (562)
100 2v70_A SLIT-2, SLIT homolog 2 99.5 9.3E-14 3.2E-18 107.7 13.2 149 59-222 13-167 (220)
101 3oja_A Leucine-rich immune mol 99.5 1.4E-14 4.9E-19 125.1 9.1 148 37-189 102-250 (487)
102 1a9n_A U2A', U2A'; complex (nu 99.5 2.6E-14 8.9E-19 106.9 9.0 129 53-187 15-151 (176)
103 2je0_A Acidic leucine-rich nuc 99.5 1.1E-14 3.9E-19 105.8 6.6 125 34-161 17-149 (149)
104 4b8c_D Glucose-repressible alc 99.5 1.8E-14 6.2E-19 130.1 8.5 119 50-171 217-335 (727)
105 2xot_A Amphoterin-induced prot 99.5 4.5E-14 1.5E-18 117.5 9.9 151 34-188 39-201 (361)
106 2ca6_A RAN GTPase-activating p 99.5 9.3E-16 3.2E-20 128.6 -0.3 154 34-187 94-285 (386)
107 2ca6_A RAN GTPase-activating p 99.5 3.1E-15 1.1E-19 125.4 1.1 133 54-187 91-255 (386)
108 4g8a_A TOLL-like receptor 4; l 99.5 1.7E-13 6E-18 121.1 12.2 162 51-222 414-581 (635)
109 3cvr_A Invasion plasmid antige 99.5 1.7E-13 5.9E-18 120.2 11.9 131 35-187 81-218 (571)
110 1w8a_A SLIT protein; signaling 99.5 1.3E-13 4.4E-18 104.7 9.4 124 37-163 11-137 (192)
111 1w8a_A SLIT protein; signaling 99.5 3E-13 1E-17 102.6 11.0 125 60-189 11-139 (192)
112 1dce_A Protein (RAB geranylger 99.5 7.2E-14 2.5E-18 122.7 8.3 119 58-182 442-566 (567)
113 3goz_A Leucine-rich repeat-con 99.5 2.5E-14 8.7E-19 118.9 4.9 151 35-187 52-236 (362)
114 1jl5_A Outer protein YOPM; leu 99.5 3E-14 1E-18 122.0 5.5 137 34-187 34-184 (454)
115 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-13 5.2E-18 102.7 8.6 126 33-163 18-151 (176)
116 3cvr_A Invasion plasmid antige 99.5 4.1E-13 1.4E-17 117.8 11.8 132 35-187 60-191 (571)
117 4b8c_D Glucose-repressible alc 99.4 1.6E-13 5.5E-18 123.9 8.4 153 34-189 173-329 (727)
118 1ds9_A Outer arm dynein; leuci 99.4 2.2E-15 7.6E-20 114.9 -3.2 143 35-182 24-180 (198)
119 3g06_A SSPH2 (leucine-rich rep 99.4 7.9E-13 2.7E-17 117.2 12.5 97 34-145 61-157 (622)
120 2wfh_A SLIT homolog 2 protein 99.4 8.2E-13 2.8E-17 100.3 10.7 120 38-162 14-136 (193)
121 2wfh_A SLIT homolog 2 protein 99.4 1.4E-12 4.8E-17 99.0 11.9 123 60-188 13-138 (193)
122 1jl5_A Outer protein YOPM; leu 99.4 9.4E-13 3.2E-17 112.8 12.1 74 57-137 131-204 (454)
123 3g06_A SSPH2 (leucine-rich rep 99.4 1.4E-12 4.8E-17 115.6 13.0 52 32-90 79-130 (622)
124 1ds9_A Outer arm dynein; leuci 99.4 4.3E-15 1.5E-19 113.4 -4.4 133 52-189 13-153 (198)
125 1z7x_W Ribonuclease inhibitor; 99.4 2.7E-14 9.3E-19 122.0 -0.8 27 207-233 397-423 (461)
126 3goz_A Leucine-rich repeat-con 99.4 2.6E-13 9E-18 112.8 5.1 188 36-227 24-244 (362)
127 2o6r_A Variable lymphocyte rec 99.4 4E-12 1.4E-16 94.9 11.1 119 39-162 12-134 (177)
128 4ay9_X Follicle-stimulating ho 99.4 1.3E-12 4.5E-17 108.1 9.1 157 34-193 54-240 (350)
129 2o6r_A Variable lymphocyte rec 99.4 1.2E-11 4E-16 92.4 12.9 126 58-189 8-137 (177)
130 1z7x_W Ribonuclease inhibitor; 99.3 3.4E-13 1.2E-17 115.2 0.5 129 34-162 28-180 (461)
131 2p1m_B Transport inhibitor res 99.2 5.5E-12 1.9E-16 110.9 4.2 130 33-162 104-245 (594)
132 2r9u_A Variable lymphocyte rec 99.2 6.3E-11 2.2E-15 88.3 8.7 96 39-137 17-114 (174)
133 2r9u_A Variable lymphocyte rec 99.2 1.6E-10 5.5E-15 86.1 10.3 99 60-163 15-116 (174)
134 2p1m_B Transport inhibitor res 99.2 1.6E-12 5.6E-17 114.4 -1.4 134 53-186 101-245 (594)
135 3g39_A Variable lymphocyte rec 99.2 9.6E-11 3.3E-15 87.0 8.4 95 39-137 14-111 (170)
136 3g39_A Variable lymphocyte rec 99.2 2.8E-10 9.4E-15 84.5 10.4 100 59-163 11-113 (170)
137 3ogk_B Coronatine-insensitive 99.1 4.4E-11 1.5E-15 105.2 5.6 34 34-67 192-230 (592)
138 3ogk_B Coronatine-insensitive 99.1 1.6E-11 5.5E-16 108.0 2.4 155 32-187 110-304 (592)
139 3sb4_A Hypothetical leucine ri 99.0 2.3E-09 7.9E-14 87.7 9.4 80 104-187 225-308 (329)
140 2ifg_A High affinity nerve gro 99.0 1.5E-09 5.2E-14 89.3 8.0 99 39-139 13-114 (347)
141 2ifg_A High affinity nerve gro 98.9 4.1E-09 1.4E-13 86.7 9.9 101 61-163 12-114 (347)
142 3un9_A NLR family member X1; l 98.9 3.5E-10 1.2E-14 94.3 1.3 129 57-187 101-250 (372)
143 3sb4_A Hypothetical leucine ri 98.8 6.4E-09 2.2E-13 85.1 7.3 125 56-185 100-283 (329)
144 3un9_A NLR family member X1; l 98.8 2.1E-10 7.3E-15 95.6 -2.0 169 56-230 71-261 (372)
145 2ra8_A Uncharacterized protein 98.7 4.4E-09 1.5E-13 87.3 3.6 173 51-230 133-329 (362)
146 2ra8_A Uncharacterized protein 98.7 1.1E-08 3.7E-13 84.9 4.4 152 32-187 137-318 (362)
147 3e4g_A ATP synthase subunit S, 98.5 1E-07 3.5E-12 70.6 5.8 83 106-188 62-151 (176)
148 3e4g_A ATP synthase subunit S, 98.4 3.9E-07 1.3E-11 67.5 5.0 39 129-167 115-154 (176)
149 4fdw_A Leucine rich hypothetic 98.3 5.9E-06 2E-10 69.4 10.7 60 52-114 175-235 (401)
150 1io0_A Tropomodulin; LRR prote 98.2 5.9E-07 2E-11 67.3 3.4 84 52-135 31-128 (185)
151 1io0_A Tropomodulin; LRR prote 98.2 1.1E-06 3.8E-11 65.8 4.8 111 75-187 30-162 (185)
152 4fdw_A Leucine rich hypothetic 98.1 2E-05 6.8E-10 66.2 11.0 147 34-187 180-356 (401)
153 3rw6_A Nuclear RNA export fact 98.0 8.7E-06 3E-10 64.4 5.4 78 103-182 168-257 (267)
154 3rw6_A Nuclear RNA export fact 97.8 3.9E-05 1.3E-09 60.7 6.4 85 102-189 138-233 (267)
155 4gt6_A Cell surface protein; l 97.3 0.0016 5.3E-08 54.3 9.7 106 76-187 260-368 (394)
156 4fs7_A Uncharacterized protein 97.1 0.0065 2.2E-07 50.5 12.0 59 124-186 293-353 (394)
157 4fs7_A Uncharacterized protein 97.1 0.0018 6.2E-08 53.9 8.6 127 52-187 248-377 (394)
158 4h09_A Hypothetical leucine ri 97.0 0.0065 2.2E-07 50.1 10.9 103 77-185 236-342 (379)
159 4gt6_A Cell surface protein; l 96.9 0.0069 2.4E-07 50.3 10.6 84 99-186 259-344 (394)
160 4h09_A Hypothetical leucine ri 96.8 0.0092 3.2E-07 49.1 10.1 117 52-176 235-356 (379)
161 1pgv_A TMD-1, tropomodulin TMD 96.5 0.0021 7.3E-08 48.2 3.9 84 54-137 38-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.4 0.003 1E-07 47.4 4.2 110 77-187 37-168 (197)
163 3rfe_A Platelet glycoprotein I 95.4 0.034 1.2E-06 38.6 5.9 33 106-138 32-65 (130)
164 3rfe_A Platelet glycoprotein I 95.4 0.026 9E-07 39.2 5.1 54 61-118 12-68 (130)
165 2lz0_A Uncharacterized protein 48.4 21 0.00073 23.0 3.7 46 43-90 5-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.8e-21 Score=160.26 Aligned_cols=160 Identities=28% Similarity=0.374 Sum_probs=126.4
Q ss_pred CcccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCC-------
Q 026675 31 DKFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSG------- 103 (235)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~------- 103 (235)
..++.+++++++++.+..+|..+.++++|++|++++|. +..+|..+..+++|++|++++|+..+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 34567777888888888888888888888888888864 5577877888888888888888777777776554
Q ss_pred --CCCCceEEecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCcee
Q 026675 104 --KDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYC 181 (235)
Q Consensus 104 --l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 181 (235)
+++|++|++++|.++.+|..+..+++|+.|++++| .+..+|..+..+++|+.|++++|.....+|..+..+++|++|
T Consensus 180 ~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp EESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred ccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 88888888888888888888888888888888874 556677778888888888888887777778778888888888
Q ss_pred ecccccccccc
Q 026675 182 ITSMCILINVV 192 (235)
Q Consensus 182 ~l~~~~~~~~~ 192 (235)
++++|...+.+
T Consensus 259 ~L~~n~~~~~~ 269 (328)
T 4fcg_A 259 ILKDCSNLLTL 269 (328)
T ss_dssp ECTTCTTCCBC
T ss_pred ECCCCCchhhc
Confidence 88888755433
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=3.9e-21 Score=158.25 Aligned_cols=161 Identities=22% Similarity=0.380 Sum_probs=146.8
Q ss_pred CcccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCccccccccc---------CCccCeeeccccccccccCCCC
Q 026675 31 DKFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSA---------LKYLSTLNLSSLLKFREFPEKT 101 (235)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~p~~~ 101 (235)
..++.+++++++++.+..+|..+.++++|++|++++|+..+.+|..+.. +++|++|++++| .++.+|..+
T Consensus 124 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l 202 (328)
T 4fcg_A 124 QQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASI 202 (328)
T ss_dssp GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGG
T ss_pred hccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhh
Confidence 4556788899999999999999999999999999999888888876654 999999999995 566899889
Q ss_pred CCCCCCceEEecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCcee
Q 026675 102 SGKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYC 181 (235)
Q Consensus 102 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 181 (235)
+.+++|++|++++|.++.+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|++|
T Consensus 203 ~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282 (328)
T ss_dssp GGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred cCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred ecccccccccc
Q 026675 182 ITSMCILINVV 192 (235)
Q Consensus 182 ~l~~~~~~~~~ 192 (235)
++++|...+.+
T Consensus 283 ~L~~n~~~~~i 293 (328)
T 4fcg_A 283 DLRGCVNLSRL 293 (328)
T ss_dssp ECTTCTTCCCC
T ss_pred eCCCCCchhhc
Confidence 99999975544
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=3.9e-19 Score=145.35 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=110.0
Q ss_pred cchhhhhhcccCcc---ccchhhhhccCCcEEeecC-CcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCce
Q 026675 34 PDIVQVLWDGIDTR---ELSFAIELLFRLVQLTLNG-CKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLE 109 (235)
Q Consensus 34 ~~l~~~~l~~~~~~---~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 109 (235)
..++.++++++.+. .+|+.+.++++|++|++++ +.....+|..+..+++|++|++++|.....+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 45777888888876 5788888899999999985 5555577777888888888888886555577777888888888
Q ss_pred EEecCcccc-CcchhhhcCCCCcEEeccCCCCccccchhhhccC-CccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 110 IHLEGTAIR-GLPASIELLSGNVLLNLKDCMNLKSLPSTINRLR-SLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 110 L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
|++++|.++ .+|..+..+++|++|++++|.....+|..+..++ .|+.|++++|.....+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 888888877 6777788888888888887544446776677776 777777777643334444444443 5555555544
No 4
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=2e-18 Score=139.07 Aligned_cols=152 Identities=22% Similarity=0.286 Sum_probs=91.1
Q ss_pred cchhhhhhcccCccccch-hhhhccCCcEEeecCCcCCcccccccccCCccCeeecccccccccc-CCCCCCCCCCceEE
Q 026675 34 PDIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREF-PEKTSGKDQLLEIH 111 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~ 111 (235)
+.++.++++++.+..+++ .+.++++|++|++++|......+..+..+++|++|++++|..++.+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 456666677777666664 4666777777777775433233555666677777777775435444 45566666677777
Q ss_pred ecCccccCc-chhhhcCCCCcEEeccCCCCccccc-hhhhccCCccEEcccCccCCCccch-hccCCCCCceeeccccc
Q 026675 112 LEGTAIRGL-PASIELLSGNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLKNAPE-TLGKVESLEYCITSMCI 187 (235)
Q Consensus 112 l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 187 (235)
+++|.++.+ +..+..+++|++|++++| .+..++ ..+..+++|+.|++++| .++.++. .+..+++|++|++++|.
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc
Confidence 776666644 344556666666666663 333443 33556666666666665 3444443 35556666666666665
No 5
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=6.4e-18 Score=129.05 Aligned_cols=129 Identities=16% Similarity=0.198 Sum_probs=67.2
Q ss_pred hhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCccccC-cchhhhcCCCCcE
Q 026675 54 ELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRG-LPASIELLSGNVL 132 (235)
Q Consensus 54 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~ 132 (235)
..+++|+.|++++| .+..+| .+..+++|++|++++| .++.++ .+..+++|++|++++|.++. .+..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44555555555553 233444 3555555555555554 333333 34455555555555555552 3444555555555
Q ss_pred EeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 133 LNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 133 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
|++++|......+..+..+++|++|++++|..++.+| .+..+++|++|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC
Confidence 5555543333344445555555556555553344444 34555555555555555
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=4.7e-18 Score=138.88 Aligned_cols=155 Identities=20% Similarity=0.193 Sum_probs=100.2
Q ss_pred cccchhhhhhcc-cCcc-ccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCce
Q 026675 32 KFPDIVQVLWDG-IDTR-ELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLE 109 (235)
Q Consensus 32 ~~~~l~~~~l~~-~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 109 (235)
.++.++++++++ +.+. .+|..+.++++|++|++++|.....+|..+..+++|++|++++|.....+|..+..+++|++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 345566677764 5554 56777777888888888876544466777777777888888775544466767777777777
Q ss_pred EEecCcccc-CcchhhhcCC-CCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 110 IHLEGTAIR-GLPASIELLS-GNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 110 L~l~~~~~~-~l~~~~~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
|++++|.++ .+|..+..++ +|+.|++++|.....+|..+..++ |+.|++++|......|..+..+++|+.|++++|.
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 777777777 6677777776 777777776544445555555554 6666666653333444455555555555555555
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=2.4e-17 Score=131.86 Aligned_cols=177 Identities=26% Similarity=0.326 Sum_probs=133.0
Q ss_pred cchhhhhhcccCccccch-hhhhccCCcEEeecCCcCCcccccc-cccCCccCeeeccccccccccC-CCCCCCCCCceE
Q 026675 34 PDIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPRT-TSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEI 110 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L 110 (235)
+.++.++++++.+..+++ .+.++++|++|++++|. ++.++.. +..+++|++|++++| .++.+| ..+..+++|++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEE
Confidence 457788888988888876 68889999999999964 5566554 577899999999995 455565 456789999999
Q ss_pred EecCccccCcch-hhhcCCCCcEEeccCCCCccccch-hhhccCCccEEcccCccCCCccch-hccCCCCCceeeccccc
Q 026675 111 HLEGTAIRGLPA-SIELLSGNVLLNLKDCMNLKSLPS-TINRLRSLRMLHLSSCFKLKNAPE-TLGKVESLEYCITSMCI 187 (235)
Q Consensus 111 ~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 187 (235)
++++|.++.++. .+..+++|++|++++| .+..++. .+..+++|+.|++++| .++.++. .+..+++|++|++++|.
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCc
Confidence 999999887654 4678999999999985 5666664 4788999999999998 4555554 57788999999999997
Q ss_pred cccccccCCCCcccccCcCcccccccchhhhhccc
Q 026675 188 LINVVRQKDSDSWKKNVDKGIKLSTTAISACSLAC 222 (235)
Q Consensus 188 ~~~~~~~~~~~~~l~~L~~~~~l~~l~~~~~~~~~ 222 (235)
+..++. ..+..+.+|+.++++++++.|
T Consensus 193 ----l~~~~~----~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 193 ----LKRVPE----GAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp ----CSCCCT----TTTTTCTTCCEEECCSSCBCC
T ss_pred ----CCcCCH----HHhccccCCCEEEecCCCeeC
Confidence 443332 012234456677777766544
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=2e-17 Score=133.19 Aligned_cols=183 Identities=19% Similarity=0.147 Sum_probs=143.7
Q ss_pred CcccchhhhhhcccCcccc-chhhhhccCCcEEeecCCcCCccc-ccccccCCccCeeeccccccccccCCCCCCCCCCc
Q 026675 31 DKFPDIVQVLWDGIDTREL-SFAIELLFRLVQLTLNGCKNLERL-PRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLL 108 (235)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 108 (235)
..++.+++++++++.+..+ |..+.++++|++|++++|..++.+ +..+..+++|++|++++|......|..+..+++|+
T Consensus 53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence 3456778889999998888 558889999999999998656666 56788899999999999654444467788999999
Q ss_pred eEEecCccccCcchh-hhcCCCCcEEeccCCCCccccc-hhhhccCCccEEcccCccCCCccchhccCCCCCceeecccc
Q 026675 109 EIHLEGTAIRGLPAS-IELLSGNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMC 186 (235)
Q Consensus 109 ~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 186 (235)
+|++++|.++.++.. +..+++|+.|++++| .+..++ ..+..+++|+.|++++|......|..+..+++|+.|++++|
T Consensus 133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 999999999977654 788999999999985 666666 45889999999999999544445778889999999999999
Q ss_pred ccccccccCCCCcccccCcCcccccccchhhhhccc
Q 026675 187 ILINVVRQKDSDSWKKNVDKGIKLSTTAISACSLAC 222 (235)
Q Consensus 187 ~~~~~~~~~~~~~~l~~L~~~~~l~~l~~~~~~~~~ 222 (235)
. +...+. ..+..+.+++.++++++...|
T Consensus 212 ~----l~~~~~----~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 212 N----LSALPT----EALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp C----CSCCCH----HHHTTCTTCCEEECCSSCEEC
T ss_pred c----CCcCCH----HHcccCcccCEEeccCCCccC
Confidence 8 443332 112334556777777776654
No 9
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=3.5e-17 Score=129.51 Aligned_cols=147 Identities=23% Similarity=0.194 Sum_probs=73.3
Q ss_pred hhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCcc
Q 026675 37 VQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTA 116 (235)
Q Consensus 37 ~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 116 (235)
+.+++++..+..+|..+. +.++.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 17 ~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp TEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 334455555555555443 455555555543322223345555556666665533222222334555556666665555
Q ss_pred ccCcch-hhhcCCCCcEEeccCCCCccccch-hhhccCCccEEcccCccCCCccch-hccCCCCCceeeccccc
Q 026675 117 IRGLPA-SIELLSGNVLLNLKDCMNLKSLPS-TINRLRSLRMLHLSSCFKLKNAPE-TLGKVESLEYCITSMCI 187 (235)
Q Consensus 117 ~~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 187 (235)
++.++. .+..+++|++|++++| .+..++. .+..+++|+.|++++| .++.++. .+..+++|++|++++|.
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc
Confidence 554442 2345555556655553 3444432 3455555556665555 3344443 35555555566655555
No 10
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=1.7e-17 Score=134.23 Aligned_cols=174 Identities=21% Similarity=0.221 Sum_probs=133.6
Q ss_pred cchhhhhhcccCccccch-hhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEe
Q 026675 34 PDIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHL 112 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 112 (235)
+.++.++++++.+..+++ .+.++++|+.|++++|. ++.++.. ..+++|++|++++ +.++.+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEECCC-CcCCcCchhhccCCCCCEEEC
Confidence 466778888888877754 68889999999999954 5666553 6788999999999 467788888888999999999
Q ss_pred cCccccCcc-hhhhcCCCCcEEeccCCCCccccc-hhhhccCCccEEcccCccCCCccch-hccCCCCCceeeccccccc
Q 026675 113 EGTAIRGLP-ASIELLSGNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLKNAPE-TLGKVESLEYCITSMCILI 189 (235)
Q Consensus 113 ~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~ 189 (235)
++|.++.++ ..+..+++|+.|++++| .+..+| ..+..+++|+.|++++| .++.+|. .+..+++|++|++++|.
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-- 183 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS-- 183 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC--
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCc--
Confidence 999998776 45788999999999985 555665 45678899999999998 5667775 45778999999999998
Q ss_pred cccccCCC-CcccccCcCcccccccchhhhhccc
Q 026675 190 NVVRQKDS-DSWKKNVDKGIKLSTTAISACSLAC 222 (235)
Q Consensus 190 ~~~~~~~~-~~~l~~L~~~~~l~~l~~~~~~~~~ 222 (235)
+..++. +.. ...++.+.+.++++.|
T Consensus 184 --l~~ip~~~~~------~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 184 --LYTIPKGFFG------SHLLPFAFLHGNPWLC 209 (290)
T ss_dssp --CCCCCTTTTT------TCCCSEEECCSCCBCC
T ss_pred --CCccChhhcc------cccCCeEEeCCCCccC
Confidence 554444 222 2346677777776665
No 11
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=141.25 Aligned_cols=181 Identities=16% Similarity=0.117 Sum_probs=96.3
Q ss_pred cccchhhhhhcccCccccch-hhhhccCCcEEeecCCcCCccccc-ccccCCccCeeecccc------------------
Q 026675 32 KFPDIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPR-TTSALKYLSTLNLSSL------------------ 91 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~------------------ 91 (235)
.++.++.++++++.+..+++ .|.++++|++|++++|. ++.++. .+..+++|++|++++|
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence 34556666677776666653 56667777777777753 444433 3555666666666663
Q ss_pred ------ccccccCC-CCCCCCCCceEEecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccC
Q 026675 92 ------LKFREFPE-KTSGKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFK 164 (235)
Q Consensus 92 ------~~~~~~p~-~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~ 164 (235)
+.+..++. .+..+++|++|++++|.++.+| .+..+++|+.|++++|......|..|..+++|+.|++++|..
T Consensus 165 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp EECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence 33333332 3444555555555555555444 244555555555555422222244555666666666666532
Q ss_pred CCccchhccCCCCCceeeccccccccccccCCCCcccccCcCcccccccchhhhhccc
Q 026675 165 LKNAPETLGKVESLEYCITSMCILINVVRQKDSDSWKKNVDKGIKLSTTAISACSLAC 222 (235)
Q Consensus 165 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~l~~l~~~~~~~~~ 222 (235)
....+..+..+++|+.|++++|. ++.++. ..+..+.+|+.++++++++.|
T Consensus 244 ~~~~~~~~~~l~~L~~L~L~~N~----l~~~~~----~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 244 QVIERNAFDNLQSLVEINLAHNN----LTLLPH----DLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CEECTTSSTTCTTCCEEECTTSC----CCCCCT----TTTSSCTTCCEEECCSSCEEC
T ss_pred eEEChhhhcCCCCCCEEECCCCC----CCccCh----hHhccccCCCEEEcCCCCccC
Confidence 22223445556666666666665 332222 011224557777888777655
No 12
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=4.5e-17 Score=130.45 Aligned_cols=150 Identities=25% Similarity=0.348 Sum_probs=109.2
Q ss_pred cccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccC-CCCCCCCCCceE
Q 026675 32 KFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEI 110 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L 110 (235)
.++.++.+.+.++.+..++ .+..+++|++|++++|. +..++ .+..+++|++|++++| .++.++ ..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEE
Confidence 3455666777777776665 46778888888888865 44444 5777888888888885 444554 446778888888
Q ss_pred EecCccccCcchh-hhcCCCCcEEeccCCCCccccc-hhhhccCCccEEcccCccCCCccch-hccCCCCCceeeccccc
Q 026675 111 HLEGTAIRGLPAS-IELLSGNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLKNAPE-TLGKVESLEYCITSMCI 187 (235)
Q Consensus 111 ~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 187 (235)
++++|.++.++.. +..+++|++|++++| .+..++ ..+..+++|+.|++++|. ++.++. .+..+++|++|++++|.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCc
Confidence 8888888866554 577888888888885 555555 446788888888888884 455543 45778888888888887
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=2.8e-17 Score=140.73 Aligned_cols=180 Identities=18% Similarity=0.120 Sum_probs=100.3
Q ss_pred ccchhhhhhcccCccccch-hhhhccCCcEEeecCCcCCccccc-ccccCCccCeeeccc--------------------
Q 026675 33 FPDIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPR-TTSALKYLSTLNLSS-------------------- 90 (235)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~-------------------- 90 (235)
++.++.++++++.+..+++ .+.++++|++|++++|. ++.++. .+..+++|++|++++
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence 3455556666666655543 45556666666666643 333332 244455555555555
Q ss_pred ----cccccccCC-CCCCCCCCceEEecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCC
Q 026675 91 ----LLKFREFPE-KTSGKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKL 165 (235)
Q Consensus 91 ----~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~ 165 (235)
|+.++.++. .+..+++|++|++++|.++.+| .+..+++|+.|++++|......|..|..+++|+.|++++|...
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence 333333332 3445566666666666666554 3556666667776664433334556667777777777776433
Q ss_pred CccchhccCCCCCceeeccccccccccccCCCCcccccCcCcccccccchhhhhccc
Q 026675 166 KNAPETLGKVESLEYCITSMCILINVVRQKDSDSWKKNVDKGIKLSTTAISACSLAC 222 (235)
Q Consensus 166 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~l~~l~~~~~~~~~ 222 (235)
...+..+..+++|+.|++++|. ++.++. ..+..+.+|+.++++++++.|
T Consensus 256 ~~~~~~~~~l~~L~~L~L~~N~----l~~~~~----~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 256 LIERNAFDGLASLVELNLAHNN----LSSLPH----DLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EECTTTTTTCTTCCEEECCSSC----CSCCCT----TSSTTCTTCCEEECCSSCEEC
T ss_pred eECHHHhcCCCCCCEEECCCCc----CCccCh----HHhccccCCCEEEccCCCcCC
Confidence 3334456667777777777776 333322 011224456777777776654
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.74 E-value=3.3e-17 Score=137.56 Aligned_cols=104 Identities=16% Similarity=0.063 Sum_probs=57.9
Q ss_pred hcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccccccccccCCC----Ccc
Q 026675 125 ELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILINVVRQKDS----DSW 200 (235)
Q Consensus 125 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~~~ 200 (235)
..+++|+.|++++|......|..+..+++|+.|++++| .++.+|..+..+++|++|++++|.. ..++. +..
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~l~~ 319 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHL----LHVERNQPQFDR 319 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCC----CCCGGGHHHHTT
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcc----eecCccccccCc
Confidence 34445555555553322233455566666666666665 3455555555566666666666652 22211 122
Q ss_pred ccc------------CcCcccccccchhhhhccchhhHHhhhhCC
Q 026675 201 KKN------------VDKGIKLSTTAISACSLACHWLIQTSRAMP 233 (235)
Q Consensus 201 l~~------------L~~~~~l~~l~~~~~~~~~~~l~~l~~~~~ 233 (235)
++. +..+.+++.++++++...|..+..+..+.+
T Consensus 320 L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~ 364 (390)
T 3o6n_A 320 LENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVA 364 (390)
T ss_dssp CSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred CCEEECCCCccceeCchhhccCCEEEcCCCCccchhHHHHHHHHH
Confidence 222 222556788888888888887777766544
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=1.7e-17 Score=134.86 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=80.0
Q ss_pred cccchhhhhhcccCcccc---chhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccC--CCCCCCCC
Q 026675 32 KFPDIVQVLWDGIDTREL---SFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFP--EKTSGKDQ 106 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p--~~~~~l~~ 106 (235)
.++.++.++++++.+..+ +..+..+++|++|++++|. +..+|..+..+++|++|++++| .++.++ ..+..+++
T Consensus 50 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~ 127 (306)
T 2z66_A 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRN 127 (306)
T ss_dssp TCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTT
T ss_pred ccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCC-cccccccchhhhhccC
Confidence 445566666666666544 4555666777777777643 4455555555666666666663 333333 24455555
Q ss_pred CceEEecCcccc-CcchhhhcCCCCcEEeccCCCCcc-ccchhhhccCCccEEcccCccCCCccchhccCCCCCceeecc
Q 026675 107 LLEIHLEGTAIR-GLPASIELLSGNVLLNLKDCMNLK-SLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITS 184 (235)
Q Consensus 107 L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 184 (235)
|++|++++|.+. ..+..+..+++|+.|++++|.... .+|..+..+++|+.|++++|......|..+..+++|++|+++
T Consensus 128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 555555555554 233334455555555555532222 234445555555555555552222223344455555555555
Q ss_pred ccc
Q 026675 185 MCI 187 (235)
Q Consensus 185 ~~~ 187 (235)
+|.
T Consensus 208 ~N~ 210 (306)
T 2z66_A 208 HNN 210 (306)
T ss_dssp TSC
T ss_pred CCc
Confidence 554
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.73 E-value=1.2e-17 Score=147.78 Aligned_cols=181 Identities=16% Similarity=0.105 Sum_probs=93.6
Q ss_pred cccchhhhhhcccCcccc---chhhhhccCCcEEeecCCcCCccccccc-------------------------ccCCcc
Q 026675 32 KFPDIVQVLWDGIDTREL---SFAIELLFRLVQLTLNGCKNLERLPRTT-------------------------SALKYL 83 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~-------------------------~~l~~L 83 (235)
.++.++.++++++.+..+ |..+..+++|+.|++++|. +..+|..+ ..+++|
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 344555555555555444 4455555555555555543 33333334 444555
Q ss_pred CeeeccccccccccCCCCCCCCCCceEEecCccccC--cchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccC
Q 026675 84 STLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRG--LPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSS 161 (235)
Q Consensus 84 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 161 (235)
++|++++|......|..+..+++|++|++++|.+.. +|..+..+++|+.|++++|......|..+..+++|+.|++++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 555555543333344445555555555555555553 454555566666666665433333344555666666666666
Q ss_pred ccCCCccchhccCCCCCceeeccccccccccccCCCCcccccCcCcc-cccccchhhhhccc
Q 026675 162 CFKLKNAPETLGKVESLEYCITSMCILINVVRQKDSDSWKKNVDKGI-KLSTTAISACSLAC 222 (235)
Q Consensus 162 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~-~l~~l~~~~~~~~~ 222 (235)
|......|..+..+++|++|++++|. ++.+|.. +.... +++.+++++++..|
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~----l~~~p~~-----~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNR----IETSKGI-----LQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSC----CCCEESC-----GGGSCTTCCEEECCSCCCCC
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCc----CcccCHh-----HhhhcccCcEEEccCCCccc
Confidence 63333335555566666666666665 3322221 11122 46777777776655
No 17
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=3e-17 Score=149.15 Aligned_cols=156 Identities=18% Similarity=0.205 Sum_probs=90.8
Q ss_pred ccchhhhhhcccCcc-ccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEE
Q 026675 33 FPDIVQVLWDGIDTR-ELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIH 111 (235)
Q Consensus 33 ~~~l~~~~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 111 (235)
.+.++.++++++.+. .+|..+.++++|++|++++|.....+|..+..+++|++|++++|.....+|..++.+++|++|+
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 345556666666665 4555666677777777777655456666666666666666666555555666666666666666
Q ss_pred ecCcccc-Ccchhh------------------------------------------------------------------
Q 026675 112 LEGTAIR-GLPASI------------------------------------------------------------------ 124 (235)
Q Consensus 112 l~~~~~~-~l~~~~------------------------------------------------------------------ 124 (235)
+++|.+. .+|..+
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 6666544 233221
Q ss_pred ----hcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeecccccc
Q 026675 125 ----ELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCIL 188 (235)
Q Consensus 125 ----~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 188 (235)
..+++|+.|++++|...+.+|..++.++.|+.|++++|.....+|..++.+++|+.|++++|..
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 1234455566665544445555566666666666666544445555555666666666666653
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=4.4e-17 Score=144.17 Aligned_cols=101 Identities=17% Similarity=0.084 Sum_probs=52.9
Q ss_pred cCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccccccccccCCC----Cccc
Q 026675 126 LLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILINVVRQKDS----DSWK 201 (235)
Q Consensus 126 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~~~l 201 (235)
.+++|+.|++++|......|..+..+++|+.|++++| .++.+|..+..+++|+.|++++|... .++. +..+
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~----~i~~~~~~l~~L 326 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL----HVERNQPQFDRL 326 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCC----CCGGGHHHHTTC
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCC----ccCcccccCCCC
Confidence 3444445555443322333445555666666666655 34445555555666666666666522 2221 2222
Q ss_pred cc------------CcCcccccccchhhhhccchhhHHhhhh
Q 026675 202 KN------------VDKGIKLSTTAISACSLACHWLIQTSRA 231 (235)
Q Consensus 202 ~~------------L~~~~~l~~l~~~~~~~~~~~l~~l~~~ 231 (235)
+. +..+..|+.++++++...|..+..+...
T Consensus 327 ~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~ 368 (597)
T 3oja_B 327 ENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRN 368 (597)
T ss_dssp SEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHHHHHHTTT
T ss_pred CEEECCCCCCCCcChhhcCCCCEEEeeCCCCCChhHHHHHHH
Confidence 22 2225567778888888877776655543
No 19
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=6e-17 Score=129.81 Aligned_cols=127 Identities=24% Similarity=0.169 Sum_probs=85.1
Q ss_pred chhhhhhcccCccccch-hhhhccCCcEEeecCCcCCcccc-cccccCCccCeeeccccccccccCCCCCCCCCCceEEe
Q 026675 35 DIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLP-RTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHL 112 (235)
Q Consensus 35 ~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 112 (235)
.++.++++++.+..+++ .+.++++|++|++++|. +..++ ..+..+++|++|++++|......+..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46777777777777766 67777888888888764 44443 35667777888888775433333356667777777777
Q ss_pred cCccccCcch-hhhcCCCCcEEeccCCCCccc--cchhhhccCCccEEcccCcc
Q 026675 113 EGTAIRGLPA-SIELLSGNVLLNLKDCMNLKS--LPSTINRLRSLRMLHLSSCF 163 (235)
Q Consensus 113 ~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~~~ 163 (235)
++|.+..++. .+..+++|++|++++| .+.. +|..+..+++|+.|++++|.
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC
Confidence 7777765544 4667777777777764 3333 56667777777777777763
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.72 E-value=4.1e-17 Score=148.27 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=45.2
Q ss_pred cchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCcccc-CcchhhhcC
Q 026675 49 LSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIR-GLPASIELL 127 (235)
Q Consensus 49 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l 127 (235)
+|..+..+++|+.|++++|.....+|..+..+++|++|++++|.....+|..++.+++|++|++++|.+. .+|..+..+
T Consensus 458 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred CCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 3334444444444444444333344444444555555555554433344544555555555555555554 445555555
Q ss_pred CCCcEEeccCCC
Q 026675 128 SGNVLLNLKDCM 139 (235)
Q Consensus 128 ~~L~~L~l~~~~ 139 (235)
++|+.|++++|.
T Consensus 538 ~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 538 RSLIWLDLNTNL 549 (768)
T ss_dssp TTCCEEECCSSE
T ss_pred CCCCEEECCCCc
Confidence 555555555543
No 21
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=8.4e-17 Score=131.20 Aligned_cols=145 Identities=17% Similarity=0.247 Sum_probs=88.6
Q ss_pred ccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEe
Q 026675 33 FPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHL 112 (235)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 112 (235)
++.++.+.+.++.+..++ .+..+++|+.|++++| .+..++. +..+++|++|++++|. ++.++ .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 455566666666666665 4666777777777775 3444554 6666777777777643 44444 3556666777777
Q ss_pred cCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 113 EGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 113 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
++|.++.++. +..+++|+.|++++| .+..++. +..+++|+.|++++| .++.++. +..+++|+.|++++|.
T Consensus 115 ~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 115 TSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCCCc
Confidence 6666666553 666666666666663 4444444 556666666666666 3444444 5566666666666665
No 22
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=4e-17 Score=132.69 Aligned_cols=152 Identities=19% Similarity=0.180 Sum_probs=94.1
Q ss_pred cchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccc--cccccCCccCeeeccccccccccCCCCCCCCCCceEE
Q 026675 34 PDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLP--RTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIH 111 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 111 (235)
+.+++++++++.+..+|..+.++++|++|++++|. +..++ ..+..+++|++|++++|......+..+..+++|++|+
T Consensus 78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred cccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 44555666666666666666667777777777743 33333 2456667777777777544444455566667777777
Q ss_pred ecCccccC--cchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccc-hhccCCCCCceeeccccc
Q 026675 112 LEGTAIRG--LPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAP-ETLGKVESLEYCITSMCI 187 (235)
Q Consensus 112 l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 187 (235)
+++|.++. +|..+..+++|+.|++++|......|..+..+++|+.|++++|. ++.++ ..+..+++|+.|++++|.
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC
Confidence 77776653 56666667777777777643333335556667777777777763 33333 345666777777777776
No 23
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=2.1e-17 Score=129.77 Aligned_cols=151 Identities=11% Similarity=0.086 Sum_probs=124.3
Q ss_pred chhhhhhcccCccccch-hhhhccCCcEEeecCCcCCccccc-ccccCCccCeeeccccccccccC-CCCCCCCCCceEE
Q 026675 35 DIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPR-TTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIH 111 (235)
Q Consensus 35 ~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~ 111 (235)
.++.++++++.+..+|+ .+.++++|+.|++++|..++.++. .+..+++|++|++++|+.++.++ ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 57788899999998887 788999999999999765766665 67889999999999866677776 5677899999999
Q ss_pred ecCccccCcchhhhcCCCCc---EEeccCCCCccccch-hhhccCCcc-EEcccCccCCCccchhccCCCCCceeecccc
Q 026675 112 LEGTAIRGLPASIELLSGNV---LLNLKDCMNLKSLPS-TINRLRSLR-MLHLSSCFKLKNAPETLGKVESLEYCITSMC 186 (235)
Q Consensus 112 l~~~~~~~l~~~~~~l~~L~---~L~l~~~~~l~~l~~-~~~~~~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 186 (235)
+++|.++.+|. +..+++|+ .|++++|+.+..++. .|..+++|+ .|++++| .++.+|......++|+.|++++|
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCC
Confidence 99999998886 77788887 999998757777764 588899999 9999988 56677765444478999999999
Q ss_pred c
Q 026675 187 I 187 (235)
Q Consensus 187 ~ 187 (235)
.
T Consensus 190 ~ 190 (239)
T 2xwt_C 190 K 190 (239)
T ss_dssp T
T ss_pred C
Confidence 5
No 24
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=1.9e-16 Score=126.81 Aligned_cols=154 Identities=25% Similarity=0.346 Sum_probs=125.8
Q ss_pred CcccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccc-cccccCCccCeeeccccccccccC-CCCCCCCCCc
Q 026675 31 DKFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLP-RTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLL 108 (235)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~ 108 (235)
..++.+++++++++.+..++ .+.++++|++|++++|. ++.++ ..+..+++|++|++++|. ++.++ ..+..+++|+
T Consensus 60 ~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred ccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCC
Confidence 45678888999999988765 78899999999999975 45554 457889999999999965 55555 4578899999
Q ss_pred eEEecCccccCcchh-hhcCCCCcEEeccCCCCccccc-hhhhccCCccEEcccCccCCCccc-hhccCCCCCceeeccc
Q 026675 109 EIHLEGTAIRGLPAS-IELLSGNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLKNAP-ETLGKVESLEYCITSM 185 (235)
Q Consensus 109 ~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~ 185 (235)
+|++++|.++.++.. +..+++|+.|++++| .+..++ ..+..+++|+.|++++|. ++.++ ..+..+++|+.|++++
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccC
Confidence 999999999977665 578999999999996 555555 557899999999999995 55555 4578899999999999
Q ss_pred cccc
Q 026675 186 CILI 189 (235)
Q Consensus 186 ~~~~ 189 (235)
|...
T Consensus 215 N~~~ 218 (272)
T 3rfs_A 215 NPWD 218 (272)
T ss_dssp SCBC
T ss_pred CCcc
Confidence 9843
No 25
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=1.4e-16 Score=126.10 Aligned_cols=152 Identities=22% Similarity=0.248 Sum_probs=126.8
Q ss_pred cchhhhhhcccCccccch-hhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccC-CCCCCCCCCceEE
Q 026675 34 PDIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIH 111 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~ 111 (235)
+.++.++++++.+..+++ .+.++++|++|++++|......+..+..+++|++|++++|. ++.++ ..+..+++|++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEE
Confidence 467888999999988876 68899999999999976444445557889999999999954 55555 5678899999999
Q ss_pred ecCccccCcchh-hhcCCCCcEEeccCCCCccccch-hhhccCCccEEcccCccCCCccc-hhccCCCCCceeecccccc
Q 026675 112 LEGTAIRGLPAS-IELLSGNVLLNLKDCMNLKSLPS-TINRLRSLRMLHLSSCFKLKNAP-ETLGKVESLEYCITSMCIL 188 (235)
Q Consensus 112 l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 188 (235)
+++|.++.++.. +..+++|+.|++++| .+..++. .+..+++|+.|++++|. ++.++ ..+..+++|++|++++|..
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCce
Confidence 999999988765 578999999999995 6667664 68899999999999994 55555 4688899999999999984
No 26
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=7.8e-18 Score=138.43 Aligned_cols=180 Identities=20% Similarity=0.153 Sum_probs=119.8
Q ss_pred cccchhhhhhcccCccc--cchhhhhccCCcEEeecCCcCCcccccccccCCccCeeecccccccc--ccCCCCCCCCCC
Q 026675 32 KFPDIVQVLWDGIDTRE--LSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFR--EFPEKTSGKDQL 107 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L 107 (235)
..+.+++++++++.+.. ++..+..+++|++|++++|......+..+..+++|++|++++|..++ .++..+..+++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 34566667777766543 56667777888888888875444555566677888888888875454 255556667888
Q ss_pred ceEEecCc-cccC--cchhhhcCC-CCcEEeccCCC-Cc--cccchhhhccCCccEEcccCccCCC-ccchhccCCCCCc
Q 026675 108 LEIHLEGT-AIRG--LPASIELLS-GNVLLNLKDCM-NL--KSLPSTINRLRSLRMLHLSSCFKLK-NAPETLGKVESLE 179 (235)
Q Consensus 108 ~~L~l~~~-~~~~--l~~~~~~l~-~L~~L~l~~~~-~l--~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~ 179 (235)
++|++++| .++. ++..+..++ +|+.|++++|. .+ ..++..+..+++|+.|++++|..++ ..+..+..+++|+
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence 88888888 7773 566677787 88888888764 33 4456667778888888888886343 4556677778888
Q ss_pred eeeccccccccccccCCCCcccccCcCcccccccchhhh
Q 026675 180 YCITSMCILINVVRQKDSDSWKKNVDKGIKLSTTAISAC 218 (235)
Q Consensus 180 ~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~l~~l~~~~~ 218 (235)
+|++++|..+.. ..+ ..+..+++|+.+++++|
T Consensus 251 ~L~l~~~~~~~~----~~~---~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 251 HLSLSRCYDIIP----ETL---LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EEECTTCTTCCG----GGG---GGGGGCTTCCEEECTTS
T ss_pred EeeCCCCCCCCH----HHH---HHHhcCCCCCEEeccCc
Confidence 888888862211 001 22333556777777776
No 27
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=1.5e-16 Score=129.67 Aligned_cols=147 Identities=16% Similarity=0.263 Sum_probs=124.6
Q ss_pred CcccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceE
Q 026675 31 DKFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEI 110 (235)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 110 (235)
..++.++.++++++.+..+++ +.++++|++|++++|. ++.++ .+..+++|++|++++| .++.++. +..+++|++|
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L 134 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVL 134 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEE
T ss_pred hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEE
Confidence 456778889999999999888 8899999999999965 66665 5788999999999995 4666665 8889999999
Q ss_pred EecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 111 HLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 111 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
++++|.++.++. +..+++|+.|++++| .+..++. +..+++|+.|++++| .++.++. +..+++|++|++++|.
T Consensus 135 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 135 YLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp ECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSC
T ss_pred ECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCCc
Confidence 999999998775 889999999999985 6677776 889999999999998 5666665 7789999999999998
No 28
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=1.8e-16 Score=128.18 Aligned_cols=146 Identities=22% Similarity=0.287 Sum_probs=113.3
Q ss_pred cccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEE
Q 026675 32 KFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIH 111 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 111 (235)
.++.++.++++++.+..++ .+..+++|+.|++++|. ++.++. +..+++|++|++++| .++.++. +..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence 4466777888888887775 47788899999998864 555655 778888999999884 4555654 77888899999
Q ss_pred ecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 112 LEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 112 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
+++|.++.++ .+..+++|+.|++++| .+..++ .+..+++|+.|++++| .++.++. +..+++|+.|++++|.
T Consensus 119 L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 119 LEHNGISDIN-GLVHLPQLESLYLGNN-KITDIT-VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp CTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcch-hhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCCc
Confidence 9988888764 5778888999988874 566664 4788888899998888 4566655 7788888888888887
No 29
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=6.7e-18 Score=150.48 Aligned_cols=155 Identities=14% Similarity=0.161 Sum_probs=132.4
Q ss_pred CcccchhhhhhcccCccc------------------cchhhh--hccCCcEEeecCCcCCcccccccccCCccCeeeccc
Q 026675 31 DKFPDIVQVLWDGIDTRE------------------LSFAIE--LLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSS 90 (235)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~------------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 90 (235)
..++.+++++++++.+.. +|+.+. ++++|++|++++|...+.+|..+..+++|++|++++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 345677888899988887 899988 999999999999988888999999999999999999
Q ss_pred ccccc--ccCCCCCCC------CCCceEEecCccccCcch--hhhcCCCCcEEeccCCCCccccchhhhccCCccEEccc
Q 026675 91 LLKFR--EFPEKTSGK------DQLLEIHLEGTAIRGLPA--SIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLS 160 (235)
Q Consensus 91 ~~~~~--~~p~~~~~l------~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 160 (235)
|..++ .+|..++.+ ++|++|++++|.++.+|. .+..+++|+.|++++|.....+| .+..+++|+.|+++
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 76344 588766665 899999999999999998 89999999999999865444888 78888999999999
Q ss_pred CccCCCccchhccCCCC-Cceeeccccc
Q 026675 161 SCFKLKNAPETLGKVES-LEYCITSMCI 187 (235)
Q Consensus 161 ~~~~~~~~~~~~~~l~~-L~~L~l~~~~ 187 (235)
+| .++.+|..+..+++ |++|++++|.
T Consensus 362 ~N-~l~~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 362 YN-QITEIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp SS-EEEECCTTSEEECTTCCEEECCSSC
T ss_pred CC-ccccccHhhhhhcccCcEEEccCCc
Confidence 88 45688888888888 9999999888
No 30
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=1.1e-16 Score=128.33 Aligned_cols=181 Identities=16% Similarity=0.101 Sum_probs=135.2
Q ss_pred cccchhhhhhcccCccccch-hhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccC-CCCCCCCCCce
Q 026675 32 KFPDIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLE 109 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~ 109 (235)
.++.+++++++++.+..+++ .+.++++|++|++++|......+..+..+++|++|++++|. +..++ ..+..+++|++
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 128 (276)
T 2z62_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKE 128 (276)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCE
T ss_pred cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCE
Confidence 45678888999999888876 68899999999999976444444678889999999999954 44444 46888999999
Q ss_pred EEecCccccC--cchhhhcCCCCcEEeccCCCCccccchhhhccCCcc----EEcccCccCCCccchhccCCCCCceeec
Q 026675 110 IHLEGTAIRG--LPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLR----MLHLSSCFKLKNAPETLGKVESLEYCIT 183 (235)
Q Consensus 110 L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~l~~L~~L~l 183 (235)
|++++|.++. +|..+..+++|+.|++++|......+..+..+++|+ .|++++| .++.++.......+|+.|++
T Consensus 129 L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L 207 (276)
T 2z62_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELAL 207 (276)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEEC
T ss_pred EECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC-cccccCccccCCCcccEEEC
Confidence 9999999885 688899999999999998643333345666666666 8999998 56677766556668999999
Q ss_pred cccccccccccCCCCcccccCcCcccccccchhhhhccc
Q 026675 184 SMCILINVVRQKDSDSWKKNVDKGIKLSTTAISACSLAC 222 (235)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~~L~~~~~l~~l~~~~~~~~~ 222 (235)
++|. ++.++. ..+..+.+++.++++++...|
T Consensus 208 ~~n~----l~~~~~----~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 208 DTNQ----LKSVPD----GIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CSSC----CSCCCT----TTTTTCCSCCEEECCSSCBCC
T ss_pred CCCc----eeecCH----hHhcccccccEEEccCCcccc
Confidence 9998 444333 012234456677777665543
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=1.4e-16 Score=136.37 Aligned_cols=152 Identities=19% Similarity=0.199 Sum_probs=116.8
Q ss_pred cchhhhhhcccCccccc-hhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccC-CCCCCCCCCceEE
Q 026675 34 PDIVQVLWDGIDTRELS-FAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIH 111 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~ 111 (235)
++++.++++++.+..++ ..|.++++|+.|++++|......+..+..+++|++|++++| .++.+| ..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 46778888898888875 47889999999999997544344567888999999999995 466666 4578899999999
Q ss_pred ecCccccCcch-hhhcCCCCcEEeccCCCCccccch-hhhccCCccEEcccCccCCCccchhccCCCCCceeecccccc
Q 026675 112 LEGTAIRGLPA-SIELLSGNVLLNLKDCMNLKSLPS-TINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCIL 188 (235)
Q Consensus 112 l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 188 (235)
+++|.++.++. .+..+++|+.|++++|+.+..++. .+..+++|+.|++++| .++.+| .+..+++|+.|++++|..
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC-CCTTCTTCCEEECTTSCC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc-cccccccccEEECcCCcC
Confidence 99999886665 567888888888888777777764 5777888888888877 455555 355677777777777763
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.69 E-value=3.5e-17 Score=145.81 Aligned_cols=157 Identities=17% Similarity=0.193 Sum_probs=129.3
Q ss_pred chhhhhhcccCcc-ccchhhhhccCCcEEeecCCcC--------------------------------------------
Q 026675 35 DIVQVLWDGIDTR-ELSFAIELLFRLVQLTLNGCKN-------------------------------------------- 69 (235)
Q Consensus 35 ~l~~~~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~-------------------------------------------- 69 (235)
.+..+.++++.+. .+|++++++++|++|++++|+.
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~ 161 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHH
Confidence 4556677777764 6788999999999999998742
Q ss_pred ---------------------------------CcccccccccCCccCeeeccccccccc------------------cC
Q 026675 70 ---------------------------------LERLPRTTSALKYLSTLNLSSLLKFRE------------------FP 98 (235)
Q Consensus 70 ---------------------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~------------------~p 98 (235)
++.+|..++.+++|++|++++|. ++. +|
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCc
Confidence 22367778889999999999966 555 89
Q ss_pred CCCC--CCCCCceEEecCcccc-CcchhhhcCCCCcEEeccCCCCcc--ccchhhhcc------CCccEEcccCccCCCc
Q 026675 99 EKTS--GKDQLLEIHLEGTAIR-GLPASIELLSGNVLLNLKDCMNLK--SLPSTINRL------RSLRMLHLSSCFKLKN 167 (235)
Q Consensus 99 ~~~~--~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~l~--~l~~~~~~~------~~L~~L~l~~~~~~~~ 167 (235)
..++ .+++|++|++++|.+. .+|..+..+++|++|++++|..+. .+|..++.+ ++|++|++++| .++.
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ 319 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKT 319 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSS
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCc
Confidence 9988 9999999999999876 789899999999999999976355 588878776 89999999998 4568
Q ss_pred cch--hccCCCCCceeeccccccccccc
Q 026675 168 APE--TLGKVESLEYCITSMCILINVVR 193 (235)
Q Consensus 168 ~~~--~~~~l~~L~~L~l~~~~~~~~~~ 193 (235)
+|. .++.+++|++|++++|...+.++
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh
Confidence 988 89999999999999998543343
No 33
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=2.3e-16 Score=125.85 Aligned_cols=144 Identities=17% Similarity=0.270 Sum_probs=82.8
Q ss_pred ccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEe
Q 026675 33 FPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHL 112 (235)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 112 (235)
++.++.++++++.+..++ .+..+++|+.|++++| .+..++. +..+++|++|++++| .++.+|.... ++|++|++
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEEEC
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccEEEc
Confidence 344555566666666555 4556666666666664 3444444 555666666666663 3444543222 56666666
Q ss_pred cCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 113 EGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 113 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
++|.++.++ .+..+++|+.|++++ +.+..++ .+..+++|+.|++++| .++.+ ..+..+++|+.|++++|.
T Consensus 114 ~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 114 DNNELRDTD-SLIHLKNLEILSIRN-NKLKSIV-MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCG-GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred cCCccCCCh-hhcCcccccEEECCC-CcCCCCh-HHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCCc
Confidence 666666554 355666666666665 3455554 3566666666666665 33443 445566666666666665
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=2.4e-16 Score=134.52 Aligned_cols=152 Identities=20% Similarity=0.215 Sum_probs=122.0
Q ss_pred cchhhhhhcccCccccc-hhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCC-CCCCCCCCceEE
Q 026675 34 PDIVQVLWDGIDTRELS-FAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPE-KTSGKDQLLEIH 111 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~ 111 (235)
++++.++++++.+..++ ..|.++++|+.|++++|......+..+..+++|++|++++| .++.++. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence 45677888999988886 47889999999999997543333467888999999999995 5666664 688899999999
Q ss_pred ecCccccCcch-hhhcCCCCcEEeccCCCCccccch-hhhccCCccEEcccCccCCCccchhccCCCCCceeecccccc
Q 026675 112 LEGTAIRGLPA-SIELLSGNVLLNLKDCMNLKSLPS-TINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCIL 188 (235)
Q Consensus 112 l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 188 (235)
+++|.++.++. .+..+++|+.|++++|+.+..++. .|..+++|+.|++++| .++.+|. +..+++|+.|++++|..
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN-LTPLIKLDELDLSGNHL 219 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC-CTTCSSCCEEECTTSCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc-cCCCcccCEEECCCCcc
Confidence 99999986655 577889999999998888887764 6788888888888887 5666764 66778888888888873
No 35
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=4.7e-16 Score=125.70 Aligned_cols=150 Identities=24% Similarity=0.314 Sum_probs=101.9
Q ss_pred ccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccC-CCCCCCCCCceEE
Q 026675 33 FPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIH 111 (235)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~ 111 (235)
++.++.++++++.+..++.. ..+++|+.|++++| .++.+|..+..+++|++|++++| .++.+| ..+..+++|++|+
T Consensus 54 l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp CTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEE
Confidence 45556667777777666654 56777777777774 45566666667777777777774 444454 4567777777777
Q ss_pred ecCccccCcchh-hhcCCCCcEEeccCCCCccccch-hhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 112 LEGTAIRGLPAS-IELLSGNVLLNLKDCMNLKSLPS-TINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 112 l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
+++|.++.++.. +..+++|+.|++++| .+..+|. .+..+++|+.|++++| .++.+|..+.....|+.+++++|.
T Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 131 LKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCCCCCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 777777766554 456777777777763 5555653 4566777777777776 466777766667777777777776
No 36
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=3.7e-16 Score=121.34 Aligned_cols=146 Identities=21% Similarity=0.232 Sum_probs=120.4
Q ss_pred hhhhcccCccccchhhhhccCCcEEeecCCcCCcccc-cccccCCccCeeeccccccccccCCCCCCCCCCceEEecCcc
Q 026675 38 QVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLP-RTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTA 116 (235)
Q Consensus 38 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 116 (235)
.+.+.++.+.++|..+. ++++.|++++|. ++.++ ..+..+++|++|++++|......|..+..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 46677888889998664 789999999965 55555 468889999999999965444447889999999999999999
Q ss_pred ccCcchh-hhcCCCCcEEeccCCCCcccc-chhhhccCCccEEcccCccCCCccc-hhccCCCCCceeecccccc
Q 026675 117 IRGLPAS-IELLSGNVLLNLKDCMNLKSL-PSTINRLRSLRMLHLSSCFKLKNAP-ETLGKVESLEYCITSMCIL 188 (235)
Q Consensus 117 ~~~l~~~-~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 188 (235)
++.+|.. +..+++|+.|++++| .+..+ +..|..+++|+.|++++|. ++.++ ..+..+++|++|++++|..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 9988876 578999999999995 45554 6778999999999999984 55555 4588899999999999984
No 37
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=4.8e-16 Score=124.25 Aligned_cols=154 Identities=21% Similarity=0.305 Sum_probs=127.2
Q ss_pred CcccchhhhhhcccCccccchh-hhhccCCcEEeecCCcCCcccc-cccccCCccCeeeccccccccccC-CCCCCCCCC
Q 026675 31 DKFPDIVQVLWDGIDTRELSFA-IELLFRLVQLTLNGCKNLERLP-RTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQL 107 (235)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L 107 (235)
..++.+++++++++.+..+|+. +.++++|++|++++|. +..++ ..+..+++|++|++++|. ++.++ ..+..+++|
T Consensus 58 ~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 135 (270)
T 2o6q_A 58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKL 135 (270)
T ss_dssp SSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred cCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCC
Confidence 3457788899999999999875 4789999999999965 55555 456889999999999954 55554 567899999
Q ss_pred ceEEecCccccCcchh-hhcCCCCcEEeccCCCCccccc-hhhhccCCccEEcccCccCCCccch-hccCCCCCceeecc
Q 026675 108 LEIHLEGTAIRGLPAS-IELLSGNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLKNAPE-TLGKVESLEYCITS 184 (235)
Q Consensus 108 ~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~ 184 (235)
++|++++|.++.++.. +..+++|+.|++++| .+..++ ..+..+++|+.|++++| .++.+|. .+..+++|+.|+++
T Consensus 136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEec
Confidence 9999999999987765 688999999999985 566665 46889999999999998 5666665 57789999999999
Q ss_pred cccc
Q 026675 185 MCIL 188 (235)
Q Consensus 185 ~~~~ 188 (235)
+|..
T Consensus 214 ~N~~ 217 (270)
T 2o6q_A 214 ENPW 217 (270)
T ss_dssp SSCB
T ss_pred CCCe
Confidence 9984
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.68 E-value=8.8e-16 Score=126.08 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=106.8
Q ss_pred chhhhhhcccCccccch-hhhhccCCcEEeecCCcCCc--ccccccccCCccCeeeccccccccccCCCCCCCCCCceEE
Q 026675 35 DIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLE--RLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIH 111 (235)
Q Consensus 35 ~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 111 (235)
.++.++++++.+..+++ .+.++++|+.|++++|.... ..+..+..+++|++|++++| .++.+|..+. ++|++|+
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELH 198 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEE
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEE
Confidence 34444555555555544 45667777777777754321 33455667778888888874 4556665543 7888888
Q ss_pred ecCccccCc-chhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 112 LEGTAIRGL-PASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 112 l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
+++|.++.+ +..+..+++|+.|++++|......+..+..+++|+.|++++| .++.+|..+..+++|++|++++|.
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence 888888854 567888899999999985433333457888999999999998 567888888889999999999998
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.68 E-value=6.1e-16 Score=132.19 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=69.9
Q ss_pred CCCCCCCCCCceEEecCccccCc-chhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCC
Q 026675 98 PEKTSGKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVE 176 (235)
Q Consensus 98 p~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 176 (235)
|..++.+++|++|++++|.++.+ +..+..+++|+.|++++|......+..+..+++|+.|++++|......|..+..++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 44455666777777777766643 44566677777777776533333355666777777777777743333355666777
Q ss_pred CCceeeccccccccccccCCCCcccccCcCcccccccchhhhhccc
Q 026675 177 SLEYCITSMCILINVVRQKDSDSWKKNVDKGIKLSTTAISACSLAC 222 (235)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~l~~l~~~~~~~~~ 222 (235)
+|++|++++|. ++.++.- .+..+.+|+.++++++...|
T Consensus 372 ~L~~L~L~~N~----l~~~~~~----~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 372 NLKELALDTNQ----LKSVPDG----IFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TCCEEECCSSC----CSCCCTT----TTTTCTTCCEEECCSSCBCC
T ss_pred cccEEECCCCc----cccCCHh----HhccCCcccEEEccCCCccc
Confidence 77777777776 3333220 12234556777777766544
No 40
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=1.6e-16 Score=129.69 Aligned_cols=150 Identities=17% Similarity=0.066 Sum_probs=60.4
Q ss_pred chhhhhhcccCccccchhhhhc-----cCCcEEeecCCcCCcccccccccCCccCeeeccccccccc--cCCCC--CCCC
Q 026675 35 DIVQVLWDGIDTRELSFAIELL-----FRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFRE--FPEKT--SGKD 105 (235)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~p~~~--~~l~ 105 (235)
.+++++++++.+..+|..+..+ ++|++|++++|......+..+..+++|++|++++|...+. ++..+ ..++
T Consensus 122 ~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 201 (312)
T 1wwl_A 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201 (312)
T ss_dssp CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT
T ss_pred CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCC
Confidence 3444444444444444444443 4444444444332222223344444444444444332221 12112 3444
Q ss_pred CCceEEecCccccCcch---h-hhcCCCCcEEeccCCCCccccc-hhhhccCCccEEcccCccCCCccchhccCCCCCce
Q 026675 106 QLLEIHLEGTAIRGLPA---S-IELLSGNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLKNAPETLGKVESLEY 180 (235)
Q Consensus 106 ~L~~L~l~~~~~~~l~~---~-~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 180 (235)
+|++|++++|.++.++. . +..+++|+.|++++|......| ..+..+++|+.|++++| .++.+|..+. ++|++
T Consensus 202 ~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSV 278 (312)
T ss_dssp TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEE
T ss_pred CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceE
Confidence 44444444444442221 1 1234444555554432222121 22333444555555544 2334444332 44455
Q ss_pred eeccccc
Q 026675 181 CITSMCI 187 (235)
Q Consensus 181 L~l~~~~ 187 (235)
|++++|.
T Consensus 279 L~Ls~N~ 285 (312)
T 1wwl_A 279 LDLSYNR 285 (312)
T ss_dssp EECCSSC
T ss_pred EECCCCC
Confidence 5555544
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.68 E-value=5.5e-16 Score=133.41 Aligned_cols=179 Identities=16% Similarity=0.120 Sum_probs=111.8
Q ss_pred chhhhhhcccCccccch-hhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEec
Q 026675 35 DIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLE 113 (235)
Q Consensus 35 ~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 113 (235)
.++.++++++.+..+++ .+.++++|+.|++++|......+..+..+++|++|++++|..+..+|.......+|+.|+++
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence 33444444444444443 34455555555555543322223345566677777777766666666555556678888888
Q ss_pred CccccCcch-hhhcCCCCcEEeccCCCCcccc-chhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccccccc
Q 026675 114 GTAIRGLPA-SIELLSGNVLLNLKDCMNLKSL-PSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILINV 191 (235)
Q Consensus 114 ~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 191 (235)
+|.++.+|. .+..+++|+.|++++|. +..+ +..+..+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus 233 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~---- 307 (477)
T 2id5_A 233 HCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ---- 307 (477)
T ss_dssp SSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC----
T ss_pred CCcccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc----
Confidence 888887774 56788888888888854 4444 4567788888888888885444446677888889999998887
Q ss_pred cccCCCCcccccCcCcccccccchhhhhccc
Q 026675 192 VRQKDSDSWKKNVDKGIKLSTTAISACSLAC 222 (235)
Q Consensus 192 ~~~~~~~~~l~~L~~~~~l~~l~~~~~~~~~ 222 (235)
++.++. ..+..+.+|+.++++++...|
T Consensus 308 l~~~~~----~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 308 LTTLEE----SVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CSCCCG----GGBSCGGGCCEEECCSSCEEC
T ss_pred CceeCH----hHcCCCcccCEEEccCCCccC
Confidence 433332 012223445666666665543
No 42
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=3.7e-17 Score=149.58 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=130.7
Q ss_pred CcccchhhhhhcccCccc------------------cchhhh--hccCCcEEeecCCcCCcccccccccCCccCeeeccc
Q 026675 31 DKFPDIVQVLWDGIDTRE------------------LSFAIE--LLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSS 90 (235)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~------------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 90 (235)
..++.++.++++++.+.. +|+.++ ++++|++|++++|.....+|..+..+++|++|++++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 345677888899998887 898877 999999999999988889999999999999999999
Q ss_pred ccccc--ccCCCCC-------CCCCCceEEecCccccCcch--hhhcCCCCcEEeccCCCCccccchhhhccCCccEEcc
Q 026675 91 LLKFR--EFPEKTS-------GKDQLLEIHLEGTAIRGLPA--SIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHL 159 (235)
Q Consensus 91 ~~~~~--~~p~~~~-------~l~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 159 (235)
|..++ .+|..++ .+++|++|++++|.++.+|. .+..+++|+.|++++| .+..+| .+..+++|+.|++
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-CCCTTSEESEEEC
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-hhcCCCcceEEEC
Confidence 76344 4665444 45599999999999999998 8999999999999985 455888 6889999999999
Q ss_pred cCccCCCccchhccCCCC-Cceeeccccc
Q 026675 160 SSCFKLKNAPETLGKVES-LEYCITSMCI 187 (235)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~-L~~L~l~~~~ 187 (235)
++|. ++.+|..+..+++ |+.|++++|.
T Consensus 603 s~N~-l~~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 603 DYNQ-IEEIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CSSC-CSCCCTTSCEECTTCCEEECCSSC
T ss_pred cCCc-cccchHHHhhccccCCEEECcCCC
Confidence 9984 5688888888888 9999999998
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.68 E-value=6e-16 Score=127.74 Aligned_cols=147 Identities=20% Similarity=0.267 Sum_probs=106.1
Q ss_pred cccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEE
Q 026675 32 KFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIH 111 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 111 (235)
.++.++.+.+.++.+..++. +..+++|++|++++| .++.++. +..+++|++|++++| .++.++ .+..+++|++|+
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence 45667777888888877764 777888888888886 4555655 777888888888885 455555 477788888888
Q ss_pred ecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 112 LEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 112 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
+++|.+..++. +..+++|+.|++++|.....++. +..+++|+.|++++|. +..++. +..+++|++|++++|.
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSC
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCc
Confidence 88888887765 77788888888888766666555 6777777777777763 444443 5566777777777765
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=2.1e-17 Score=137.06 Aligned_cols=152 Identities=15% Similarity=0.112 Sum_probs=91.1
Q ss_pred chhhhhhcccCccccch-hhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCC-CCCCCCCceEEe
Q 026675 35 DIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEK-TSGKDQLLEIHL 112 (235)
Q Consensus 35 ~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l 112 (235)
.++.++++++.+..+++ .+.++++|+.|++++|......+..+..+++|++|++++| .++.+|.. ++.+++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEEC
Confidence 45666666666666665 5666677777777665322222344666667777777663 34445533 556666777777
Q ss_pred cCccccCcch--hhhcCCCCcEEeccCCCCccccc-hhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 113 EGTAIRGLPA--SIELLSGNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 113 ~~~~~~~l~~--~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
++|.++.++. .+..+++|+.|++++|..+..++ ..+..+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 7766666654 45566677777776654455443 456666666666666664333335555666666666666665
No 45
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=5.7e-16 Score=118.13 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=129.7
Q ss_pred CcccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceE
Q 026675 31 DKFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEI 110 (235)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 110 (235)
..++.++.++++++.+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......+..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 35567888999999999888 7889999999999997 455554 67889999999999966555578889999999999
Q ss_pred EecCcccc-CcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 111 HLEGTAIR-GLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 111 ~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
++++|.++ ..+..+..+++|+.|++++|..+..+| .+..+++|+.|++++| .++.++ .+..+++|++|++++|.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence 99999998 467789999999999999977688888 4899999999999998 566666 67889999999999998
No 46
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.67 E-value=4.4e-16 Score=137.65 Aligned_cols=130 Identities=20% Similarity=0.136 Sum_probs=71.8
Q ss_pred ccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCC-CCCCCCCCceEE
Q 026675 33 FPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPE-KTSGKDQLLEIH 111 (235)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~ 111 (235)
++.+++++++++.+.++|..+.++++|++|++++|......|..+..+++|++|++++|.....+|. .+..+++|++|+
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred ccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 4556666777777777777777777777777777543333344555666666666666544333432 355566666666
Q ss_pred ecCccccCc---chhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCc
Q 026675 112 LEGTAIRGL---PASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSC 162 (235)
Q Consensus 112 l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~ 162 (235)
+++|.++.. +..+..+++|+.|++++|......|..+..+++|+.|++++|
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 666655532 334555555555555554322223333444444444444444
No 47
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=8e-16 Score=120.14 Aligned_cols=147 Identities=22% Similarity=0.182 Sum_probs=123.4
Q ss_pred hhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccC-CCCCCCCCCceEEecCc
Q 026675 37 VQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIHLEGT 115 (235)
Q Consensus 37 ~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~ 115 (235)
+.++.++..+..+|..+. ++|+.|++++|......+..+..+++|++|++++| .++.+| ..+..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence 446777888889998664 89999999997654444677888999999999995 467776 45688999999999999
Q ss_pred cccCcchh-hhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccc-hhccCCCCCceeecccccc
Q 026675 116 AIRGLPAS-IELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAP-ETLGKVESLEYCITSMCIL 188 (235)
Q Consensus 116 ~~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 188 (235)
.++.++.. +..+++|+.|++++ +.+..+|..+..+++|+.|++++| .++.++ ..+..+++|+.|++++|..
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred cCCccChhHhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 99987765 57899999999998 577799988999999999999998 566666 4578899999999999984
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=131.88 Aligned_cols=178 Identities=17% Similarity=0.135 Sum_probs=85.6
Q ss_pred hhhhhhcccCccccchh-hhhccCCcEEeecCCcCCccccc--ccccCCccCeeeccccccccccC-CCCCCCCCCceEE
Q 026675 36 IVQVLWDGIDTRELSFA-IELLFRLVQLTLNGCKNLERLPR--TTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIH 111 (235)
Q Consensus 36 l~~~~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~ 111 (235)
+++++++++.+..+|+. +.++++|++|++++|. ++.+|. .+..+++|++|++++|..++.++ ..+..+++|++|+
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 33344444444444432 3444444444444432 233332 34444445555554443333332 3344455555555
Q ss_pred ecCccccCc-chhhhcCCCCcEEeccCCCCccccchh-hhccCCccEEcccCccCCC-----------------------
Q 026675 112 LEGTAIRGL-PASIELLSGNVLLNLKDCMNLKSLPST-INRLRSLRMLHLSSCFKLK----------------------- 166 (235)
Q Consensus 112 l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~----------------------- 166 (235)
+++|.++.. |..+..+++|+.|++++| .+..+|.. +..+++|+.|++++|....
T Consensus 181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 181 IDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred CCCCCcCccCHHHHhccccCCeecCCCC-ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 555544422 444555555555555553 23444432 3345666666666653221
Q ss_pred --------ccchhccCCCCCceeeccccccccccccCCCCcccccCcCcccccccchhhhhccch
Q 026675 167 --------NAPETLGKVESLEYCITSMCILINVVRQKDSDSWKKNVDKGIKLSTTAISACSLACH 223 (235)
Q Consensus 167 --------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~l~~l~~~~~~~~~~ 223 (235)
.+|..+..+++|+.|++++|. ++.++.- .+..+.+|+.++++++...|.
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~----l~~i~~~----~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQ----LKSVPDG----IFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSC----CCCCCTT----TTTTCTTCCEEECCSSCBCCC
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCC----CCccCHH----HHhcCCCCCEEEeeCCCccCc
Confidence 133445667777777777776 4333330 012345567777777766543
No 49
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.67 E-value=5.4e-16 Score=130.17 Aligned_cols=151 Identities=20% Similarity=0.189 Sum_probs=118.0
Q ss_pred cccchhhhhhcccCccccchh-hhhccCCcEEeecCCcCCcccc-cccccCCccCeeecccccccccc-CCCCCCCCCCc
Q 026675 32 KFPDIVQVLWDGIDTRELSFA-IELLFRLVQLTLNGCKNLERLP-RTTSALKYLSTLNLSSLLKFREF-PEKTSGKDQLL 108 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~ 108 (235)
..++++.+.+.++.+..+|+. +.++++|++|++++|. +..++ ..+..+++|++|++++|. ++.+ |..++.+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCC
Confidence 456777888899999999885 5789999999999975 45554 478889999999999965 5444 46688999999
Q ss_pred eEEecCccccCcchhh-hcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 109 EIHLEGTAIRGLPASI-ELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 109 ~L~l~~~~~~~l~~~~-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
+|++++|.++.+|..+ ..+++|++|++++|......+..+..+++|+.|++++| .++.++ +..+++|+.+++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~--~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC--GGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc--cccccccceeeccccc
Confidence 9999999999888774 78999999999986444444566889999999999998 445443 3355666666666554
No 50
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=1.1e-15 Score=135.13 Aligned_cols=146 Identities=22% Similarity=0.293 Sum_probs=112.3
Q ss_pred cccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEE
Q 026675 32 KFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIH 111 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 111 (235)
.++.++.+.++++.+..++ .+..+++|+.|++++|. +..++. +..+++|+.|++++| .+..+| .+..+++|+.|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 4456677788888887776 57788999999998864 555555 777888999999885 455555 577888899999
Q ss_pred ecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 112 LEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 112 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
+++|.+..++ .+..+++|+.|++++| .+..+ ..+..+++|+.|++++| .+..++. +..+++|+.|++++|.
T Consensus 116 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 116 LEHNGISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp CTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC
T ss_pred ecCCCCCCCc-cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCCC
Confidence 9888888765 5778888888888874 55566 44788888888888888 4555554 7788888888888887
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=136.92 Aligned_cols=183 Identities=16% Similarity=0.097 Sum_probs=136.1
Q ss_pred CcccchhhhhhcccCcccc---chhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccC-CCCCCCCC
Q 026675 31 DKFPDIVQVLWDGIDTREL---SFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQ 106 (235)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~ 106 (235)
..++.++.++++++.+..+ +..+.++++|++|++++|. +..++..+..+++|++|++++|......+ ..+..+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 3556777788888877665 5678889999999999965 55555558889999999999965333333 46778999
Q ss_pred CceEEecCcccc-CcchhhhcCCCCcEEeccCCCCc-cccchhhhccCCccEEcccCccCCCccchhccCCCCCceeecc
Q 026675 107 LLEIHLEGTAIR-GLPASIELLSGNVLLNLKDCMNL-KSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITS 184 (235)
Q Consensus 107 L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~l-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 184 (235)
|++|++++|.+. ..+..+..+++|+.|++++|... ..+|..+..+++|+.|++++|......|..+..+++|++|+++
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 999999999888 46667888999999999986544 3678888999999999999985444447788899999999999
Q ss_pred ccccccccccCCCCcccccCcCcccccccchhhhhccc
Q 026675 185 MCILINVVRQKDSDSWKKNVDKGIKLSTTAISACSLAC 222 (235)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~~L~~~~~l~~l~~~~~~~~~ 222 (235)
+|. ++..+. ..+..+.+|+.++++++...|
T Consensus 503 ~n~----l~~~~~----~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 503 SNQ----LKSVPD----GIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp SSC----CSCCCT----TTTTTCTTCCEEECCSSCBCC
T ss_pred CCc----CCCCCH----HHhhcccCCcEEEecCCcccC
Confidence 998 333322 012234456677777765543
No 52
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.66 E-value=5.7e-16 Score=133.29 Aligned_cols=152 Identities=20% Similarity=0.156 Sum_probs=104.5
Q ss_pred cchhhhhhcccCccccch-hhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCC-CCCCCCCCceEE
Q 026675 34 PDIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPE-KTSGKDQLLEIH 111 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~ 111 (235)
+.++.++++++.+..+++ .|.++++|++|++++|......|..+..+++|++|++++| .++.+|. .+..+++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEE
Confidence 456677788888777754 6778888888888886543334666777888888888884 4555663 467788888888
Q ss_pred ecCccccCc-chhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccc-hhccCCCCCceeeccccc
Q 026675 112 LEGTAIRGL-PASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAP-ETLGKVESLEYCITSMCI 187 (235)
Q Consensus 112 l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 187 (235)
+++|.+..+ +..+..+++|+.|++++|......+..+..+++|+.|++++| .++.++ ..+..+++|+.|++++|.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCc
Confidence 888877743 456677778888888775433334456777777777777777 344444 346667777777777665
No 53
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=2.7e-16 Score=143.89 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=95.6
Q ss_pred cccccccCCccCeeecccccccc-----------------ccCCCCC--CCCCCceEEecCcccc-CcchhhhcCCCCcE
Q 026675 73 LPRTTSALKYLSTLNLSSLLKFR-----------------EFPEKTS--GKDQLLEIHLEGTAIR-GLPASIELLSGNVL 132 (235)
Q Consensus 73 ~~~~~~~l~~L~~L~l~~~~~~~-----------------~~p~~~~--~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~ 132 (235)
+|..+..+++|++|++++|.... .+|..++ .+++|++|++++|.+. .+|..+..+++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 67778889999999999965433 2888887 8999999999999866 78988999999999
Q ss_pred EeccCCCCcc--ccchhhhccC-------CccEEcccCccCCCccch--hccCCCCCceeecccccc
Q 026675 133 LNLKDCMNLK--SLPSTINRLR-------SLRMLHLSSCFKLKNAPE--TLGKVESLEYCITSMCIL 188 (235)
Q Consensus 133 L~l~~~~~l~--~l~~~~~~~~-------~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~ 188 (235)
|++++|..+. .+|..++.++ +|+.|++++| .++.+|. .+..+++|+.|++++|..
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l 585 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKV 585 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCC
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCc
Confidence 9999876354 4787666665 9999999998 4568888 888999999999999983
No 54
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=3.8e-16 Score=122.58 Aligned_cols=153 Identities=14% Similarity=0.167 Sum_probs=127.0
Q ss_pred cccchhhhhhcccC-ccccch-hhhhccCCcEEeecCCcCCcccc-cccccCCccCeeeccccccccccCCCCCCCCCCc
Q 026675 32 KFPDIVQVLWDGID-TRELSF-AIELLFRLVQLTLNGCKNLERLP-RTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLL 108 (235)
Q Consensus 32 ~~~~l~~~~l~~~~-~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 108 (235)
.++.++.++++++. +..+++ .+.++++|++|++++|+.++.++ ..+..+++|++|++++| .++.+|. +..+++|+
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~ 130 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTD 130 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCC
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-cccccccc
Confidence 45678889999996 888887 78899999999999855677766 46788999999999995 5666887 88888888
Q ss_pred ---eEEecCc-cccCcchh-hhcCCCCc-EEeccCCCCccccchhhhccCCccEEcccCccCCCccc-hhccCC-CCCce
Q 026675 109 ---EIHLEGT-AIRGLPAS-IELLSGNV-LLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAP-ETLGKV-ESLEY 180 (235)
Q Consensus 109 ---~L~l~~~-~~~~l~~~-~~~l~~L~-~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l-~~L~~ 180 (235)
+|++++| .++.++.. +..+++|+ .|++++| .+..+|......++|+.|++++|..++.++ ..+..+ ++|+.
T Consensus 131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~ 209 (239)
T 2xwt_C 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209 (239)
T ss_dssp SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSE
T ss_pred cccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcE
Confidence 9999999 99977754 78899999 9999984 666777644444899999999996577776 457788 99999
Q ss_pred eeccccc
Q 026675 181 CITSMCI 187 (235)
Q Consensus 181 L~l~~~~ 187 (235)
|++++|.
T Consensus 210 L~l~~N~ 216 (239)
T 2xwt_C 210 LDVSQTS 216 (239)
T ss_dssp EECTTCC
T ss_pred EECCCCc
Confidence 9999998
No 55
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.65 E-value=4e-16 Score=133.31 Aligned_cols=154 Identities=18% Similarity=0.078 Sum_probs=102.3
Q ss_pred cchhhhhhcccCcccc-chhhhhccCCcEEeecCCcCCccc-ccccccCCccCeeeccccccccccCCCCCCCCCCceEE
Q 026675 34 PDIVQVLWDGIDTREL-SFAIELLFRLVQLTLNGCKNLERL-PRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIH 111 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 111 (235)
+.+++++++++.+..+ |..+.++++|++|++++|.....+ +..+..+++|++|++++|......|..++.+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 4567777777777766 446777888888888876544344 34567778888888888554444466777788888888
Q ss_pred ecCccccC-cchh--hhcCCCCcEEeccCCCCccccchh-hhccCCccEEcccCccCCCccchhccCC--CCCceeeccc
Q 026675 112 LEGTAIRG-LPAS--IELLSGNVLLNLKDCMNLKSLPST-INRLRSLRMLHLSSCFKLKNAPETLGKV--ESLEYCITSM 185 (235)
Q Consensus 112 l~~~~~~~-l~~~--~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~ 185 (235)
+++|.++. .+.. +..+++|++|++++|......|.. +..+++|++|++++|......+..+..+ .+|+.+++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 88887764 3333 667778888888775433333543 6777888888888775444444444433 4666777776
Q ss_pred cc
Q 026675 186 CI 187 (235)
Q Consensus 186 ~~ 187 (235)
|.
T Consensus 190 n~ 191 (455)
T 3v47_A 190 IT 191 (455)
T ss_dssp CB
T ss_pred Cc
Confidence 66
No 56
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.65 E-value=7e-16 Score=134.04 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=109.4
Q ss_pred hhccCCcEEeecCCcCCcccccccccCCccCeeecccccccc--ccCCCCCCCCCCceEEecCccccC-cchh-hhcCCC
Q 026675 54 ELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFR--EFPEKTSGKDQLLEIHLEGTAIRG-LPAS-IELLSG 129 (235)
Q Consensus 54 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~~-l~~~-~~~l~~ 129 (235)
..+++|++|++++|......|..+..+++|++|++++|.... .+|..++.+++|++|++++|.+.. +|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 456777778887765544466667777888888888754332 445566777888888888887775 6654 566778
Q ss_pred CcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccccccccccCCCCcccccCcCccc
Q 026675 130 NVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILINVVRQKDSDSWKKNVDKGIK 209 (235)
Q Consensus 130 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~ 209 (235)
|+.|++++|.....+|..+. ++|+.|++++| .++.+|..+..+++|++|++++|. ++.++.- .+..+.+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~----l~~l~~~----~~~~l~~ 469 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ----LKSVPDG----IFDRLTS 469 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC----CCCCCTT----TTTTCTT
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc----CCccCHH----HhccCCc
Confidence 88888887654455554332 67888888888 566888877788889999999887 4444331 1333556
Q ss_pred ccccchhhhhccc
Q 026675 210 LSTTAISACSLAC 222 (235)
Q Consensus 210 l~~l~~~~~~~~~ 222 (235)
++.++++++...|
T Consensus 470 L~~L~l~~N~~~c 482 (520)
T 2z7x_B 470 LQKIWLHTNPWDC 482 (520)
T ss_dssp CCEEECCSSCBCC
T ss_pred ccEEECcCCCCcc
Confidence 7788888877765
No 57
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.65 E-value=2.1e-15 Score=124.47 Aligned_cols=148 Identities=17% Similarity=0.223 Sum_probs=80.2
Q ss_pred ccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCccccc---------------------ccccCCccCeeecccc
Q 026675 33 FPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPR---------------------TTSALKYLSTLNLSSL 91 (235)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---------------------~~~~l~~L~~L~l~~~ 91 (235)
.+.++++.++++.+..+++ +..+++|+.|++++|. +..++. .+..+++|++|++++|
T Consensus 154 l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 154 MTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN 231 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-ccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCC
Confidence 3445555555555555544 4555666666665543 223322 1444555555555553
Q ss_pred ccccccCCCCCCCCCCceEEecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchh
Q 026675 92 LKFREFPEKTSGKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPET 171 (235)
Q Consensus 92 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 171 (235)
.++.++. +..+++|++|++++|.++.++ .+..+++|+.|++++| .+..++. +..+++|+.|++++|......+..
T Consensus 232 -~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 232 -KITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSN-QISDISV-LNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp -CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECCSSCCCGGGHHH
T ss_pred -ccCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCC-ccCCChh-hcCCCCCCEEECcCCcCCCcChhH
Confidence 3333433 555666666666666555543 3556666666666653 4444433 556666666666666433344455
Q ss_pred ccCCCCCceeeccccc
Q 026675 172 LGKVESLEYCITSMCI 187 (235)
Q Consensus 172 ~~~l~~L~~L~l~~~~ 187 (235)
+..+++|++|++++|.
T Consensus 307 l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNH 322 (347)
T ss_dssp HHTCTTCSEEECCSSS
T ss_pred hhccccCCEEEccCCc
Confidence 5666666666666666
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.65 E-value=6.2e-16 Score=136.73 Aligned_cols=155 Identities=14% Similarity=0.098 Sum_probs=115.0
Q ss_pred cccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcc--cccccccCCccCeeeccccccccccCCCCCCCCCCce
Q 026675 32 KFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLER--LPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLE 109 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 109 (235)
..+.++.+.++++..... ..+..+++|++|++++|..... .+..+..+++|++|++++| .+..+|..+..+++|+.
T Consensus 326 ~l~~L~~L~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSIS-FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQH 403 (606)
T ss_dssp CCSSCCEEEEESCSSCEE-CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCE
T ss_pred CCCccceeeccCCcCccc-hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCe
Confidence 456677788887743221 2566899999999999753322 3667888999999999995 46678888888999999
Q ss_pred EEecCccccCcc--hhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCC-ccchhccCCCCCceeecccc
Q 026675 110 IHLEGTAIRGLP--ASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLK-NAPETLGKVESLEYCITSMC 186 (235)
Q Consensus 110 L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~ 186 (235)
|++++|.+...+ ..+..+++|+.|++++|......|..+..+++|+.|++++|.... .+|..+..+++|+.|++++|
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence 999999887554 367788888888888876555566677777888888888774333 25666777777888888777
Q ss_pred cc
Q 026675 187 IL 188 (235)
Q Consensus 187 ~~ 188 (235)
..
T Consensus 484 ~l 485 (606)
T 3vq2_A 484 QL 485 (606)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 59
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.65 E-value=2.3e-15 Score=116.86 Aligned_cols=146 Identities=18% Similarity=0.137 Sum_probs=119.3
Q ss_pred hhhhcccCccccchhhhhccCCcEEeecCCcCCccc-c-cccccCCccCeeeccccccccccC-CCCCCCCCCceEEecC
Q 026675 38 QVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERL-P-RTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIHLEG 114 (235)
Q Consensus 38 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~-~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~ 114 (235)
.++++++.+.++|..+. ..++.|++++|. ++.+ + ..+..+++|++|++++| .++.++ ..+..+++|++|++++
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCC
Confidence 57788888888988663 567899999965 5555 3 34788999999999995 466665 4789999999999999
Q ss_pred ccccCcchh-hhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCcc-chhccCCCCCceeecccccc
Q 026675 115 TAIRGLPAS-IELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNA-PETLGKVESLEYCITSMCIL 188 (235)
Q Consensus 115 ~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~ 188 (235)
|.++.++.. +..+++|++|++++|......|..+..+++|+.|++++|. ++.+ |..+..+++|+.|++++|..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 999977654 7899999999999964444446788999999999999984 5555 77888999999999999984
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.65 E-value=1.5e-15 Score=124.77 Aligned_cols=147 Identities=19% Similarity=0.312 Sum_probs=93.5
Q ss_pred cchhhhhhcccCccccchhhhhccCCcEEeecCCcCCccccc-ccccCCccCeeeccccc--------------------
Q 026675 34 PDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPR-TTSALKYLSTLNLSSLL-------------------- 92 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~-------------------- 92 (235)
+.+++++++++.+.++|..+. ++|++|++++|. ++.++. .+..+++|++|++++|.
T Consensus 102 ~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~ 178 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178 (332)
T ss_dssp TTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCB
T ss_pred CCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEE
Confidence 445555555555555554433 455555555533 233332 24445555555555532
Q ss_pred ----cccccCCCCCCCCCCceEEecCccccCcc-hhhhcCCCCcEEeccCCCCccccc-hhhhccCCccEEcccCccCCC
Q 026675 93 ----KFREFPEKTSGKDQLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLK 166 (235)
Q Consensus 93 ----~~~~~p~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~ 166 (235)
.++.+|..+. ++|+.|++++|.++.++ ..+..+++|+.|++++| .+..++ ..+..+++|+.|++++| .++
T Consensus 179 l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 254 (332)
T 2ft3_A 179 ISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLS 254 (332)
T ss_dssp CCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCC
T ss_pred CcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCe
Confidence 2333443332 56777777777777554 56778888888888885 444444 56888889999999888 567
Q ss_pred ccchhccCCCCCceeeccccc
Q 026675 167 NAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 167 ~~~~~~~~l~~L~~L~l~~~~ 187 (235)
.+|..+..+++|+.|++++|.
T Consensus 255 ~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp BCCTTGGGCTTCCEEECCSSC
T ss_pred ecChhhhcCccCCEEECCCCC
Confidence 888888888899999999888
No 61
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.65 E-value=1e-15 Score=135.27 Aligned_cols=155 Identities=15% Similarity=0.052 Sum_probs=85.2
Q ss_pred cchhhhhhcccCcccc---chhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccC-CCCCCCCCCce
Q 026675 34 PDIVQVLWDGIDTREL---SFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLE 109 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~ 109 (235)
+.+++++++++.+..+ +..+.++++|+.|++++|......|..+..+++|++|++++|......+ ..+..+++|++
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 3444455555554443 3345555666666666544333334445556666666666643322222 22555666666
Q ss_pred EEecCccccC-cchhhhcCCCCcEEeccCCCCccc---cchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccc
Q 026675 110 IHLEGTAIRG-LPASIELLSGNVLLNLKDCMNLKS---LPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSM 185 (235)
Q Consensus 110 L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~~l~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 185 (235)
|++++|.++. .+..+..+++|+.|++++|...+. .+..+..+++|+.|++++|......|..+..+++|++|++++
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence 6666666653 344456666677777666433221 123466667777777777643333345666777777777777
Q ss_pred ccc
Q 026675 186 CIL 188 (235)
Q Consensus 186 ~~~ 188 (235)
|..
T Consensus 510 N~l 512 (606)
T 3t6q_A 510 NRL 512 (606)
T ss_dssp SCC
T ss_pred Ccc
Confidence 764
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=1.6e-15 Score=134.11 Aligned_cols=39 Identities=21% Similarity=-0.052 Sum_probs=17.5
Q ss_pred hccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 149 NRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 149 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
..+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC
Confidence 334444444444442222233444455555555555554
No 63
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=1.2e-16 Score=131.24 Aligned_cols=179 Identities=15% Similarity=0.124 Sum_probs=134.2
Q ss_pred cchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcc-cccccccCCccCeeeccccccccccCCCCCCCCCCceEEe
Q 026675 34 PDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLER-LPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHL 112 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 112 (235)
+.++.+.+.++.+...++.+..+++|++|++++|..... ++..+..+++|++|++++|......+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 445566677777777776677899999999999864333 6667788999999999998655566777888999999999
Q ss_pred cCc-ccc--CcchhhhcCCCCcEEeccCCCCccc--cchhhhccC-CccEEcccCcc-CC--CccchhccCCCCCceeec
Q 026675 113 EGT-AIR--GLPASIELLSGNVLLNLKDCMNLKS--LPSTINRLR-SLRMLHLSSCF-KL--KNAPETLGKVESLEYCIT 183 (235)
Q Consensus 113 ~~~-~~~--~l~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~-~L~~L~l~~~~-~~--~~~~~~~~~l~~L~~L~l 183 (235)
++| .++ .++..+..+++|+.|++++|..+.. ++..+..++ +|+.|++++|. .+ ..++..+..+++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 999 677 4777788999999999999856654 577788899 99999999984 23 346667778999999999
Q ss_pred cccccccccccCCCCcccccCcCcccccccchhhhh
Q 026675 184 SMCILINVVRQKDSDSWKKNVDKGIKLSTTAISACS 219 (235)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~~L~~~~~l~~l~~~~~~ 219 (235)
++|..+++. .+. .+..+++|+.+++++|.
T Consensus 230 ~~~~~l~~~-~~~------~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 230 SDSVMLKND-CFQ------EFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TTCTTCCGG-GGG------GGGGCTTCCEEECTTCT
T ss_pred CCCCcCCHH-HHH------HHhCCCCCCEeeCCCCC
Confidence 999843211 011 12233556677776663
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=7.2e-16 Score=126.05 Aligned_cols=178 Identities=16% Similarity=0.114 Sum_probs=91.5
Q ss_pred cchhhhhhcccCccccch-hhhhccCCcEEeecCCcCCcccccccccCCccCeeecccccccccc---------------
Q 026675 34 PDIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREF--------------- 97 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--------------- 97 (235)
+.+++++++++.+..+++ .+.++++|++|++++|. +...++ +..+++|++|++++|. ++.+
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~~~~L~~L~l~~n~ 110 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNN 110 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE-EEEEEECTTCCEEECCSSC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc-cccccCCCCcCEEECCCCc
Confidence 345566666666666553 56666667777766654 332322 4555556666555532 2221
Q ss_pred --------------------------CCCCCCCCCCceEEecCccccCc-chhh-hcCCCCcEEeccCCCCccccchhhh
Q 026675 98 --------------------------PEKTSGKDQLLEIHLEGTAIRGL-PASI-ELLSGNVLLNLKDCMNLKSLPSTIN 149 (235)
Q Consensus 98 --------------------------p~~~~~l~~L~~L~l~~~~~~~l-~~~~-~~l~~L~~L~l~~~~~l~~l~~~~~ 149 (235)
+..+..+++|++|++++|.++.+ +..+ ..+++|+.|++++| .+..++. ..
T Consensus 111 l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~ 188 (317)
T 3o53_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKG-QV 188 (317)
T ss_dssp CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEEC-CC
T ss_pred cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCccccc-cc
Confidence 12333344555555555554432 2222 24455555555552 3444433 22
Q ss_pred ccCCccEEcccCccCCCccchhccCCCCCceeeccccccccccccCCCCcccccCcCcccccccchhhhhccchhhH
Q 026675 150 RLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILINVVRQKDSDSWKKNVDKGIKLSTTAISACSLACHWLI 226 (235)
Q Consensus 150 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~l~~l~~~~~~~~~~~l~ 226 (235)
.+++|+.|++++| .++.+|..+..+++|+.|++++|. ++.++. .+..+.+++.++++++...|..+.
T Consensus 189 ~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~----l~~l~~-----~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 189 VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK----LVLIEK-----ALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC----CCEECT-----TCCCCTTCCEEECTTCCCBHHHHH
T ss_pred ccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCc----ccchhh-----HhhcCCCCCEEEccCCCccCcCHH
Confidence 3556666666665 445555556666666666666666 332222 122244567777777666654443
No 65
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=2.2e-15 Score=120.06 Aligned_cols=145 Identities=18% Similarity=0.192 Sum_probs=122.9
Q ss_pred cccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEE
Q 026675 32 KFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIH 111 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 111 (235)
.+..+..+.+.++.+..++ .+..+++|+.|++++| .++.++ .+..+++|++|++++| .++.++. +..+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEE
Confidence 3445667788888888888 6789999999999996 467777 6888999999999995 5777776 88999999999
Q ss_pred ecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 112 LEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 112 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
+++|.++.++.... ++|+.|++++| .+..++. +..+++|+.|++++| .++.++ .+..+++|+.|++++|.
T Consensus 92 L~~N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS--ACLSRLFLDNN-ELRDTDS-LIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp CCSSCCSCCTTCCC--SSCCEEECCSS-CCSBSGG-GTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTSC
T ss_pred CCCCccCCcCcccc--CcccEEEccCC-ccCCChh-hcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCCc
Confidence 99999998875443 99999999995 6777765 889999999999998 567776 67889999999999998
No 66
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=9.8e-16 Score=124.86 Aligned_cols=152 Identities=15% Similarity=0.035 Sum_probs=72.9
Q ss_pred ccchhhhhhcccCccccc-----hhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccc--cC--CCCCC
Q 026675 33 FPDIVQVLWDGIDTRELS-----FAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFRE--FP--EKTSG 103 (235)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~-----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~p--~~~~~ 103 (235)
.+.++.++++++.+.... ..+..+++|++|++++|......+..+..+++|++|++++|..... ++ ..+..
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 195 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK 195 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence 344455555555544321 1222455555566555443222334455555666666665432221 22 11234
Q ss_pred CCCCceEEecCccccCcchh----hhcCCCCcEEeccCCCCccccchhhhcc---CCccEEcccCccCCCccchhccCCC
Q 026675 104 KDQLLEIHLEGTAIRGLPAS----IELLSGNVLLNLKDCMNLKSLPSTINRL---RSLRMLHLSSCFKLKNAPETLGKVE 176 (235)
Q Consensus 104 l~~L~~L~l~~~~~~~l~~~----~~~l~~L~~L~l~~~~~l~~l~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~l~ 176 (235)
+++|++|++++|.++.++.. +..+++|++|++++|......|..+..+ ++|+.|++++| .++.+|..+. +
T Consensus 196 l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~ 272 (310)
T 4glp_A 196 FPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--A 272 (310)
T ss_dssp SCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--S
T ss_pred CCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--C
Confidence 55566666666655544332 3455566666666533222224434443 45666666655 3445554432 4
Q ss_pred CCceeeccccc
Q 026675 177 SLEYCITSMCI 187 (235)
Q Consensus 177 ~L~~L~l~~~~ 187 (235)
+|++|++++|.
T Consensus 273 ~L~~L~Ls~N~ 283 (310)
T 4glp_A 273 KLRVLDLSSNR 283 (310)
T ss_dssp CCSCEECCSCC
T ss_pred CCCEEECCCCc
Confidence 56666666665
No 67
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=2.7e-15 Score=121.34 Aligned_cols=148 Identities=19% Similarity=0.218 Sum_probs=126.8
Q ss_pred CcccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceE
Q 026675 31 DKFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEI 110 (235)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 110 (235)
..++.++.++++++.+..+++ +.++++|++|++++|. ++.++. +..+++|++|++++| .++.++ .+..+++|++|
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L 139 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESL 139 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEE
T ss_pred hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEE
Confidence 445778889999999999887 8899999999999965 556554 888999999999995 566564 57789999999
Q ss_pred EecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeecccccc
Q 026675 111 HLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCIL 188 (235)
Q Consensus 111 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 188 (235)
++++|.++.+ ..+..+++|+.|++++| .+..++. +..+++|+.|++++| .++.++. +..+++|+.|++++|..
T Consensus 140 ~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 140 YLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp ECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred EccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCcc
Confidence 9999999987 57889999999999985 6777766 889999999999998 5677764 78999999999999983
No 68
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.64 E-value=2.8e-15 Score=123.07 Aligned_cols=149 Identities=19% Similarity=0.192 Sum_probs=108.7
Q ss_pred cchhhhhhcccCccccch-hhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEe
Q 026675 34 PDIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHL 112 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 112 (235)
+.++.++++++.+..+++ .+.++++|++|++++|......|..+..+++|++|++++| .++.+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEEC
Confidence 456677778888877776 6778888888888886543334667777888888888884 4666776553 67888888
Q ss_pred cCccccCcch-hhhcCCCCcEEeccCCCCcc--ccchhhhccCCccEEcccCccCCCccchhccCCCCCceeecccccc
Q 026675 113 EGTAIRGLPA-SIELLSGNVLLNLKDCMNLK--SLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCIL 188 (235)
Q Consensus 113 ~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 188 (235)
++|.++.++. .+..+++|+.|++++|.... ..+..+..+++|+.|++++| .++.+|..+. ++|++|++++|..
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCcC
Confidence 8888876554 46788888888888754422 44566788888888888887 4666776543 7888888888873
No 69
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=3.6e-15 Score=110.70 Aligned_cols=129 Identities=22% Similarity=0.274 Sum_probs=108.6
Q ss_pred hccCCcEEeecCCcCC-cccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCccccC-cchhhhcCCCCcE
Q 026675 55 LLFRLVQLTLNGCKNL-ERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRG-LPASIELLSGNVL 132 (235)
Q Consensus 55 ~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~ 132 (235)
..++|+.|++++|... ..+|..+..+++|++|++++|. ++.+ ..+..+++|++|++++|.++. +|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3478999999997643 3788878889999999999965 6666 678889999999999999996 7777778999999
Q ss_pred EeccCCCCccccc--hhhhccCCccEEcccCccCCCccch----hccCCCCCceeeccccc
Q 026675 133 LNLKDCMNLKSLP--STINRLRSLRMLHLSSCFKLKNAPE----TLGKVESLEYCITSMCI 187 (235)
Q Consensus 133 L~l~~~~~l~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~ 187 (235)
|++++| .+..++ ..+..+++|+.|++++| .++.+|. .+..+++|++|++++|.
T Consensus 100 L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 100 LNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 999985 677765 67889999999999998 4566665 78899999999999998
No 70
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=7.4e-15 Score=112.78 Aligned_cols=144 Identities=24% Similarity=0.317 Sum_probs=94.1
Q ss_pred hhhcccCccccchhhhhccCCcEEeecCCcCCccccc-ccccCCccCeeeccccccccccCC-CCCCCCCCceEEecCcc
Q 026675 39 VLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPR-TTSALKYLSTLNLSSLLKFREFPE-KTSGKDQLLEIHLEGTA 116 (235)
Q Consensus 39 ~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~ 116 (235)
+..++..+.++|..+ .++|++|++++|. ++.++. .+..+++|++|++++| .++.++. .+..+++|++|++++|.
T Consensus 12 v~c~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 12 VECYSQGRTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EECCSSCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCCCccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc
Confidence 445566666666554 3577777777754 444443 3566777888887774 4445553 45667778888887777
Q ss_pred ccCcchh-hhcCCCCcEEeccCCCCccccc-hhhhccCCccEEcccCccCCCccch-hccCCCCCceeecccccc
Q 026675 117 IRGLPAS-IELLSGNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLKNAPE-TLGKVESLEYCITSMCIL 188 (235)
Q Consensus 117 ~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~ 188 (235)
++.++.. +..+++|+.|++++| .+..++ ..+..+++|+.|++++| .++.++. .+..+++|++|++++|..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe
Confidence 7766544 467777788877774 455554 34667777788887777 3445554 356677777777777763
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.63 E-value=1.3e-15 Score=133.00 Aligned_cols=153 Identities=12% Similarity=0.057 Sum_probs=97.1
Q ss_pred cchhhhhhcccCccccc-hhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccC-CCCCCCCCCceEE
Q 026675 34 PDIVQVLWDGIDTRELS-FAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIH 111 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~ 111 (235)
+.++.++++++.+..++ ..+.++++|++|++++|......|..+..+++|++|++++|. ++.++ ..++.+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEE
Confidence 35666667777666654 356677777777777754333334556667777777777743 44444 3366677777777
Q ss_pred ecCccccC--cchhhhcCCCCcEEeccCCCCccccc-hhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 112 LEGTAIRG--LPASIELLSGNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 112 l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
+++|.++. .+..+..+++|++|++++|..+..+| ..+..+++|++|++++|......|..+..+++|++|+++.|.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 77776663 34556677777777777665555555 356677777777777764444456666667777777776665
No 72
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.62 E-value=1.8e-15 Score=125.89 Aligned_cols=145 Identities=19% Similarity=0.101 Sum_probs=114.7
Q ss_pred hhhhcccCccccchhhhhccCCcEEeecCCcCCccccc-ccc-cCCccCeeeccccccccccC-CCCCCCCCCceEEecC
Q 026675 38 QVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPR-TTS-ALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIHLEG 114 (235)
Q Consensus 38 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~-~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~ 114 (235)
.+.++++.+.++|..+. +.++.|++++|. ++.++. .+. .+++|++|++++| .++.++ ..+..+++|++|++++
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC
Confidence 46778888888887653 568999999965 555544 455 7999999999995 555555 5788999999999999
Q ss_pred ccccCcch-hhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhc----cCCCCCceeeccccc
Q 026675 115 TAIRGLPA-SIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETL----GKVESLEYCITSMCI 187 (235)
Q Consensus 115 ~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~ 187 (235)
|.++.++. .+..+++|+.|++++|......+..|..+++|+.|++++| .++.+|..+ ..+++|+.|++++|.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 99997665 5788999999999985444444677899999999999998 577777654 568999999999998
No 73
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.62 E-value=2.5e-15 Score=134.57 Aligned_cols=153 Identities=19% Similarity=0.120 Sum_probs=126.5
Q ss_pred cchhhhhhcccCccccch-hhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCC-CCCCCCCCceEE
Q 026675 34 PDIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPE-KTSGKDQLLEIH 111 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~ 111 (235)
+.++.++++++.+..+++ .+.++++|++|++++|......|..+..+++|++|++++| .++.+|. .+..+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEE
Confidence 568889999999988887 6889999999999997655555667888999999999995 5667775 688999999999
Q ss_pred ecCccccCcc-hhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccc-hhc--cCCCCCceeeccccc
Q 026675 112 LEGTAIRGLP-ASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAP-ETL--GKVESLEYCITSMCI 187 (235)
Q Consensus 112 l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~--~~l~~L~~L~l~~~~ 187 (235)
+++|.++.++ ..+..+++|++|++++|......+..+.++++|++|++++|. ++.++ ..+ ..+++|++|++++|.
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCc
Confidence 9999999776 568899999999999976555556778899999999999984 44444 333 356899999999997
Q ss_pred c
Q 026675 188 L 188 (235)
Q Consensus 188 ~ 188 (235)
.
T Consensus 183 l 183 (680)
T 1ziw_A 183 I 183 (680)
T ss_dssp C
T ss_pred c
Confidence 4
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=1.8e-15 Score=130.83 Aligned_cols=179 Identities=17% Similarity=0.076 Sum_probs=88.7
Q ss_pred ccchhhhhhcccCccccch-hhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCC-----------
Q 026675 33 FPDIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEK----------- 100 (235)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~----------- 100 (235)
.++++.++++++.+..+++ .+.++++|++|++++|. +...++ +..+++|++|++++| .++.+|..
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~~~~L~~L~L~~N 109 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLVGPSIETLHAANN 109 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEEECTTCCEEECCSS
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCCCCCCcCEEECcCC
Confidence 3456667777777766653 66777777777777754 333332 555666666666664 22222210
Q ss_pred ------CCCCCCCceEEecCccccCc-chhhhcCCCCcEEeccCCCCccccchhhh-c----------------------
Q 026675 101 ------TSGKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDCMNLKSLPSTIN-R---------------------- 150 (235)
Q Consensus 101 ------~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~-~---------------------- 150 (235)
...+++|++|++++|.++.+ |..+..+++|+.|++++|......|..+. .
T Consensus 110 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~ 189 (487)
T 3oja_A 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189 (487)
T ss_dssp CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccccc
Confidence 01234445555555544433 22344455555555554322222333332 3
Q ss_pred cCCccEEcccCccCCCccchhccCCCCCceeeccccccccccccCCCCcccccCcCcccccccchhhhhccchh
Q 026675 151 LRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILINVVRQKDSDSWKKNVDKGIKLSTTAISACSLACHW 224 (235)
Q Consensus 151 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~l~~l~~~~~~~~~~~ 224 (235)
+++|+.|++++| .++.+|..+..+++|+.|++++|. +..+|. .+..+.+++.++++++...|..
T Consensus 190 l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~----l~~lp~-----~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 190 FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK----LVLIEK-----ALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp CTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC----CCEECT-----TCCCCTTCCEEECTTCCBCHHH
T ss_pred CCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCc----Ccccch-----hhccCCCCCEEEcCCCCCcCcc
Confidence 445555555554 344444445555555555555555 222222 0122345666666666655443
No 75
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.62 E-value=2.5e-15 Score=137.85 Aligned_cols=157 Identities=17% Similarity=0.138 Sum_probs=117.0
Q ss_pred ccchhhhhhcccCcccc-chhhhhccCCcEEeecCCcCCccc-ccccccCCccCeeeccccccccccCCCCCCCCCCceE
Q 026675 33 FPDIVQVLWDGIDTREL-SFAIELLFRLVQLTLNGCKNLERL-PRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEI 110 (235)
Q Consensus 33 ~~~l~~~~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 110 (235)
.+.++.++++++.+..+ |..+.++++|++|++++|.....+ |..+..+++|++|++++|......|..++.+++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 35667788888888776 457788888999999887666666 5668888889999998865444457788888889999
Q ss_pred EecCccccC-cchh--hhcCCCCcEEeccCCCCccccc-hhhhccCCccEEcccCccCCCccchhccCC--CCCceeecc
Q 026675 111 HLEGTAIRG-LPAS--IELLSGNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLKNAPETLGKV--ESLEYCITS 184 (235)
Q Consensus 111 ~l~~~~~~~-l~~~--~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~ 184 (235)
++++|.++. .+.. +..+++|+.|++++|......+ ..++++++|++|++++|......+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 998888874 4544 7788888888888854433333 467888888889888885444455556555 788888888
Q ss_pred ccccc
Q 026675 185 MCILI 189 (235)
Q Consensus 185 ~~~~~ 189 (235)
.|...
T Consensus 183 ~n~l~ 187 (844)
T 3j0a_A 183 ANSLY 187 (844)
T ss_dssp CSBSC
T ss_pred CCccc
Confidence 88743
No 76
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.62 E-value=2.1e-15 Score=132.43 Aligned_cols=157 Identities=14% Similarity=0.131 Sum_probs=114.3
Q ss_pred hhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccc---cCCCCCCCCCCceEEecCccccC-cchh-hhcCC
Q 026675 54 ELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFRE---FPEKTSGKDQLLEIHLEGTAIRG-LPAS-IELLS 128 (235)
Q Consensus 54 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~p~~~~~l~~L~~L~l~~~~~~~-l~~~-~~~l~ 128 (235)
..+++|++|++++|......|..+..+++|++|++++| .++. +|..+..+++|++|++++|.++. +|.. +..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 46788888888887655556777788888888888885 4443 34567788888888888888875 6654 56778
Q ss_pred CCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccccccccccCCCCcccccCcCcc
Q 026675 129 GNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILINVVRQKDSDSWKKNVDKGI 208 (235)
Q Consensus 129 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~ 208 (235)
+|+.|++++|.....+|..+. ++|+.|++++| .++.+|..+..+++|++|++++|. ++.++.. .+..+.
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~----l~~l~~~----~~~~l~ 497 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ----LKSVPDG----VFDRLT 497 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC----CCCCCTT----STTTCT
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC----CCCCCHH----HHhcCC
Confidence 888888888654444444322 68999999998 677888877789999999999998 4444431 133345
Q ss_pred cccccchhhhhccc
Q 026675 209 KLSTTAISACSLAC 222 (235)
Q Consensus 209 ~l~~l~~~~~~~~~ 222 (235)
+++.+++++++..|
T Consensus 498 ~L~~L~l~~N~~~c 511 (562)
T 3a79_B 498 SLQYIWLHDNPWDC 511 (562)
T ss_dssp TCCCEECCSCCBCC
T ss_pred CCCEEEecCCCcCC
Confidence 57778888777765
No 77
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.61 E-value=5.3e-15 Score=121.54 Aligned_cols=146 Identities=23% Similarity=0.226 Sum_probs=77.4
Q ss_pred chhhhhhcccCccccch-hhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEec
Q 026675 35 DIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLE 113 (235)
Q Consensus 35 ~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 113 (235)
.++.++++++.+..+++ .+.++++|++|++++|......|..+..+++|++|++++| .++.+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEECC
Confidence 44555555555555543 4555666666666654322222444555666666666653 3445554433 556666666
Q ss_pred CccccCcch-hhhcCCCCcEEeccCCCCc--cccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 114 GTAIRGLPA-SIELLSGNVLLNLKDCMNL--KSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 114 ~~~~~~l~~-~~~~l~~L~~L~l~~~~~l--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
+|.++.++. .+..+++|+.|++++|... ...+..+..+ +|+.|++++| .++.+|..+. ++|++|++++|.
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~ 204 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNELHLDHNK 204 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCCBCCSSC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEEECCCCc
Confidence 665554443 2455666666666654321 1233444444 5666666665 3444554332 567777777776
No 78
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.61 E-value=1.4e-14 Score=113.15 Aligned_cols=153 Identities=18% Similarity=0.207 Sum_probs=120.0
Q ss_pred CCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCccccCcchh-hhcCCCCcEEecc
Q 026675 58 RLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLK 136 (235)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~ 136 (235)
..+.++.++ +.++.+|..+ .++|++|++++|......|..+..+++|++|++++|.++.++.. +..+++|+.|+++
T Consensus 20 s~~~v~c~~-~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRS-KRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTT-SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccC-CCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 356788887 4578888765 48999999999654444467888999999999999999988755 5789999999999
Q ss_pred CCCCccccc-hhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccccccccccCCCCcccccCcCcccccccch
Q 026675 137 DCMNLKSLP-STINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILINVVRQKDSDSWKKNVDKGIKLSTTAI 215 (235)
Q Consensus 137 ~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~l~~l~~ 215 (235)
+| .+..++ ..+..+++|+.|++++| .++.+|..+..+++|++|++++|. +..++. ..+..+.+|+.+++
T Consensus 97 ~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~----l~~~~~----~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 97 TN-QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ----LKSIPH----GAFDRLSSLTHAYL 166 (229)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC----CCCCCT----TTTTTCTTCCEEEC
T ss_pred CC-cCCccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCc----CCccCH----HHHhCCCCCCEEEe
Confidence 95 666666 45789999999999998 677999989999999999999998 444433 11233445677777
Q ss_pred hhhhccch
Q 026675 216 SACSLACH 223 (235)
Q Consensus 216 ~~~~~~~~ 223 (235)
.++...|.
T Consensus 167 ~~N~~~c~ 174 (229)
T 3e6j_A 167 FGNPWDCE 174 (229)
T ss_dssp TTSCBCTT
T ss_pred eCCCccCC
Confidence 77766543
No 79
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=132.37 Aligned_cols=157 Identities=19% Similarity=0.166 Sum_probs=132.3
Q ss_pred cccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccc-cccccCCccCeeeccccccccccCCCCCCCCCCceE
Q 026675 32 KFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLP-RTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEI 110 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 110 (235)
..+.++.++++++.+..+++.+..+++|+.|++++|......+ ..+..+++|++|++++|......|..+..+++|++|
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred ccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence 3467788889999998888888899999999999976444334 357889999999999987666677888999999999
Q ss_pred EecCcccc--CcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccc-hhccCCCCCceeeccccc
Q 026675 111 HLEGTAIR--GLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAP-ETLGKVESLEYCITSMCI 187 (235)
Q Consensus 111 ~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 187 (235)
++++|.++ .+|..+..+++|+.|++++|......|..+..+++|+.|++++|. ++.++ ..+..+++|+.|++++|.
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCc
Confidence 99999987 588889999999999999975555557889999999999999994 55554 568899999999999999
Q ss_pred cc
Q 026675 188 LI 189 (235)
Q Consensus 188 ~~ 189 (235)
..
T Consensus 530 ~~ 531 (570)
T 2z63_A 530 WD 531 (570)
T ss_dssp BC
T ss_pred cc
Confidence 54
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=1.3e-15 Score=124.27 Aligned_cols=106 Identities=15% Similarity=0.035 Sum_probs=42.3
Q ss_pred CccCeeeccccccccccCCCCCCCCCCceEEecCccccC---cchhh--hcCCCCcEEeccCCCCcccc---c-hhhhcc
Q 026675 81 KYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRG---LPASI--ELLSGNVLLNLKDCMNLKSL---P-STINRL 151 (235)
Q Consensus 81 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~---l~~~~--~~l~~L~~L~l~~~~~l~~l---~-~~~~~~ 151 (235)
++|++|++++|......|..++.+++|++|++++|.+.+ ++..+ ..+++|+.|++++| .+..+ + ..+..+
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAAR 227 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcC
Confidence 444444444432222122344444455555555444331 12222 34445555555442 22221 1 112334
Q ss_pred CCccEEcccCccCCCccc-hhccCCCCCceeeccccc
Q 026675 152 RSLRMLHLSSCFKLKNAP-ETLGKVESLEYCITSMCI 187 (235)
Q Consensus 152 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 187 (235)
++|+.|++++|......| ..+..+++|++|++++|.
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 455555555542222121 223334455555555554
No 81
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.60 E-value=8.6e-15 Score=125.55 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=96.9
Q ss_pred cccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEE
Q 026675 32 KFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIH 111 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 111 (235)
.++.++.++++++.+..+| .+..+++|++|++++|. ++.+| +..+++|++|++++| .++.++ ++.+++|++|+
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEE
T ss_pred HcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCEEE
Confidence 3456677778888877776 67788888888888864 55554 667788888888884 355554 66777888888
Q ss_pred ecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 112 LEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 112 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
+++|.++.++ +..+++|+.|++++| .+..++ ++.+++|+.|++++|..+..+ .+..+++|++|++++|.
T Consensus 113 L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 113 CDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred CCCCcCCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 8888777665 667777777777764 444453 556666777777666544444 24556666666666665
No 82
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=1.4e-16 Score=139.92 Aligned_cols=150 Identities=15% Similarity=0.092 Sum_probs=95.3
Q ss_pred ccchhhhhhcccCccccchhhhhccCCcEEeecCCc-------------CCcccccccccCC------------------
Q 026675 33 FPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCK-------------NLERLPRTTSALK------------------ 81 (235)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~------------------ 81 (235)
.++++.+.++++.+..+|+.++++++|+.|++++|. .....|..++.++
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 456677888888888999999999999999987653 1222233333333
Q ss_pred --------------ccCeeeccccccccccCCCCCCCCCCceEEecCccccCcchhhhcCCCCcEEeccCCCCccccchh
Q 026675 82 --------------YLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPST 147 (235)
Q Consensus 82 --------------~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~ 147 (235)
.|++|++++| .++.+|. ++.+++|+.|++++|.++.+|..++.+++|+.|++++ +.+..+| .
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~ 503 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-G 503 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-G
T ss_pred hhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-c
Confidence 3555666663 4445554 5666666666666666666666666666666666666 3455565 4
Q ss_pred hhccCCccEEcccCccCCCcc--chhccCCCCCceeeccccc
Q 026675 148 INRLRSLRMLHLSSCFKLKNA--PETLGKVESLEYCITSMCI 187 (235)
Q Consensus 148 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~ 187 (235)
++.+++|+.|++++| .++.+ |..++.+++|+.|++++|.
T Consensus 504 l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 504 VANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp GTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred cCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 666666666666666 34444 5566666666666666666
No 83
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.59 E-value=2.8e-15 Score=130.24 Aligned_cols=124 Identities=17% Similarity=0.020 Sum_probs=64.6
Q ss_pred cchhhhhhcccCccccch-hhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEe
Q 026675 34 PDIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHL 112 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 112 (235)
+.+++++++++.+..+++ .+.++++|++|++++|......|..+..+++|++|++++| .++.+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEec
Confidence 345555555555555543 4555566666666654322222445555556666666653 34455544 4555666666
Q ss_pred cCccccC--cchhhhcCCCCcEEeccCCCCccccchhhhccCCc--cEEcccCcc
Q 026675 113 EGTAIRG--LPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSL--RMLHLSSCF 163 (235)
Q Consensus 113 ~~~~~~~--l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L--~~L~l~~~~ 163 (235)
++|.++. +|..++.+++|++|++++|. +.. ..+..+++| +.|++++|.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECT
T ss_pred cCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccc
Confidence 6665553 34555556666666665532 222 224445555 556665553
No 84
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=3e-15 Score=111.09 Aligned_cols=133 Identities=18% Similarity=0.236 Sum_probs=110.6
Q ss_pred cchhhhhhcccCcc--ccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEE
Q 026675 34 PDIVQVLWDGIDTR--ELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIH 111 (235)
Q Consensus 34 ~~l~~~~l~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 111 (235)
+.++.++++++.+. .+|..+..+++|+.|++++|. ++.+ ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45677888888887 888888999999999999976 5555 6688899999999999654444776666799999999
Q ss_pred ecCccccCcc--hhhhcCCCCcEEeccCCCCccccch----hhhccCCccEEcccCccCCCccch
Q 026675 112 LEGTAIRGLP--ASIELLSGNVLLNLKDCMNLKSLPS----TINRLRSLRMLHLSSCFKLKNAPE 170 (235)
Q Consensus 112 l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~l~~l~~----~~~~~~~L~~L~l~~~~~~~~~~~ 170 (235)
+++|.++.++ ..+..+++|+.|++++| .+..++. .+..+++|+.|++++| ....+|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 9999999876 67889999999999995 5666665 7889999999999998 4555554
No 85
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=7.8e-15 Score=112.63 Aligned_cols=150 Identities=26% Similarity=0.294 Sum_probs=121.0
Q ss_pred ccchhhhhhcccCccccch-hhhhccCCcEEeecCCcCCccccc-ccccCCccCeeeccccccccccCC-CCCCCCCCce
Q 026675 33 FPDIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPR-TTSALKYLSTLNLSSLLKFREFPE-KTSGKDQLLE 109 (235)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~ 109 (235)
.+.+++++++++.+..+++ .+.++++|++|++++|. ++.++. .+..+++|++|++++| .++.++. .+..+++|++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCE
Confidence 3467889999999988887 46799999999999965 556654 4678999999999995 4556664 5688999999
Q ss_pred EEecCccccCcchh-hhcCCCCcEEeccCCCCccccch-hhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 110 IHLEGTAIRGLPAS-IELLSGNVLLNLKDCMNLKSLPS-TINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 110 L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
|++++|.++.++.. +..+++|+.|++++| .+..++. .+..+++|+.|++++|+.. ..++.|+.|+++.|.
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINK 176 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHH
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHh
Confidence 99999999977765 688999999999995 5666664 5788999999999998422 356789999999888
Q ss_pred ccccc
Q 026675 188 LINVV 192 (235)
Q Consensus 188 ~~~~~ 192 (235)
..+.+
T Consensus 177 ~~g~i 181 (208)
T 2o6s_A 177 HSGVV 181 (208)
T ss_dssp CTTTB
T ss_pred CCcee
Confidence 65444
No 86
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.59 E-value=1.6e-14 Score=123.85 Aligned_cols=142 Identities=15% Similarity=0.147 Sum_probs=109.1
Q ss_pred CcccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceE
Q 026675 31 DKFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEI 110 (235)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 110 (235)
..++.+++++++++.+..+| +..+++|++|++++|. ++.++ +..+++|++|++++| .++.+| ++.+++|++|
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYL 132 (457)
T ss_dssp GGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECCSS-CCSCCC--CTTCTTCCEE
T ss_pred cccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEECCCC-cCCeec--CCCCCcCCEE
Confidence 34567788889999988886 7889999999999965 55554 778999999999995 565565 7789999999
Q ss_pred EecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 111 HLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 111 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
++++|.++.++ ++.+++|+.|++++|..+..++ +..+++|+.|++++| .++.+| +..+++|+.|++++|.
T Consensus 133 ~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 133 NCARNTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTNN 202 (457)
T ss_dssp ECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSSC
T ss_pred ECCCCccceec--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCC-ccceec--cccCCCCCEEECcCCc
Confidence 99999888764 7778888888888876666663 567777777777776 455555 5566666666666665
No 87
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.58 E-value=7.5e-15 Score=129.88 Aligned_cols=144 Identities=21% Similarity=0.194 Sum_probs=101.8
Q ss_pred hhhcccCccccchhhhhccCCcEEeecCCcCCcccc-cccccCCccCeeeccccccccccC-CCCCCCCCCceEEecCcc
Q 026675 39 VLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLP-RTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIHLEGTA 116 (235)
Q Consensus 39 ~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~ 116 (235)
+..++-.+.+||..+. +++++|++++| .++.++ ..|..+++|++|++++| .++.++ .++..+++|++|++++|.
T Consensus 36 ~~c~~~~l~~vP~~lp--~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 36 YQCMELNFYKIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EECCCCCcCccCCCCC--cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc
Confidence 3445556777776542 46888888885 455554 46777888888888884 455555 457778888888888888
Q ss_pred ccCcchh-hhcCCCCcEEeccCCCCccccc-hhhhccCCccEEcccCccCCC-ccchhccCCCCCceeeccccc
Q 026675 117 IRGLPAS-IELLSGNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLK-NAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 117 ~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~ 187 (235)
++.+|.. +..+++|++|++++| .+..++ ..|+++++|++|++++|.... ..|..+..+++|++|++++|.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 8877654 577888888888874 555555 357788888888888874322 345667778888888888877
No 88
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.58 E-value=6.6e-16 Score=134.94 Aligned_cols=152 Identities=14% Similarity=0.070 Sum_probs=68.4
Q ss_pred cchhhhhhcccCccccch-hhhhccCCcEEeecCCcCCccccc-ccccCCccCeeecccccccc-ccCCCCCCCCCCceE
Q 026675 34 PDIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPR-TTSALKYLSTLNLSSLLKFR-EFPEKTSGKDQLLEI 110 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L 110 (235)
+.+++++++++.+..+++ .+.++++|++|++++|. +..++. .+..+++|++|++++|.... ..|..++.+++|++|
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 344444455555444432 44455555555555533 222222 24445555555555532211 223344455555555
Q ss_pred EecCcc-ccCcc-hhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhc-cCCCCCceeeccccc
Q 026675 111 HLEGTA-IRGLP-ASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETL-GKVESLEYCITSMCI 187 (235)
Q Consensus 111 ~l~~~~-~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~ 187 (235)
++++|. +..++ ..+..+++|+.|++++|......|..+..+++|+.|+++.|. ...+|..+ ..+++|++|++++|.
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCB
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEEccCCc
Confidence 555554 33333 234445555555555443333344445555555555555442 23333322 234555555555554
No 89
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=9.6e-15 Score=106.21 Aligned_cols=125 Identities=19% Similarity=0.290 Sum_probs=94.9
Q ss_pred ccCCcEEeecCCcCC-cccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCccccC-cchhhhcCCCCcEE
Q 026675 56 LFRLVQLTLNGCKNL-ERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRG-LPASIELLSGNVLL 133 (235)
Q Consensus 56 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L 133 (235)
.++|+.|++++|... ..+|..+..+++|++|++++| .++.+ ..+..+++|++|++++|.++. +|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 477888888887543 367777778888888888885 45555 567788888899998888886 77767778888888
Q ss_pred eccCCCCccccc--hhhhccCCccEEcccCccCCCccch----hccCCCCCceeecc
Q 026675 134 NLKDCMNLKSLP--STINRLRSLRMLHLSSCFKLKNAPE----TLGKVESLEYCITS 184 (235)
Q Consensus 134 ~l~~~~~l~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~ 184 (235)
++++| .+..++ ..+..+++|+.|++++| .++.++. .+..+++|+.|+++
T Consensus 94 ~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 88885 466554 66788888888888888 4555554 57778888888765
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=2.2e-14 Score=126.89 Aligned_cols=148 Identities=19% Similarity=0.225 Sum_probs=126.3
Q ss_pred CcccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceE
Q 026675 31 DKFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEI 110 (235)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 110 (235)
..++.++.+.++++.+..+++ +..+++|+.|++++|. +..++ .+..+++|+.|++++| .+..++ .+..+++|+.|
T Consensus 62 ~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 136 (605)
T 1m9s_A 62 QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESL 136 (605)
T ss_dssp GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEECTTS-CCCCCG-GGGGCTTCSEE
T ss_pred ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEecCC-CCCCCc-cccCCCccCEE
Confidence 456778889999999998887 8899999999999974 55655 5888999999999995 455555 47789999999
Q ss_pred EecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeecccccc
Q 026675 111 HLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCIL 188 (235)
Q Consensus 111 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 188 (235)
++++|.++.+ ..+..+++|+.|++++| .+..++. +..+++|+.|++++| .++.++ .+..+++|+.|++++|..
T Consensus 137 ~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 137 YLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp ECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred ECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCcC
Confidence 9999999987 57889999999999985 5666655 899999999999998 567775 578999999999999984
No 91
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.58 E-value=2.1e-14 Score=123.33 Aligned_cols=85 Identities=14% Similarity=0.268 Sum_probs=52.2
Q ss_pred cccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEE
Q 026675 32 KFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIH 111 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 111 (235)
.++.+++++++++.+..+++ +.++++|++|++++|. +..++. +..+++|++|++++| .++.++. +..+++|++|+
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNRLE 140 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEE
T ss_pred hhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCEEE
Confidence 34556666667776666665 6667777777777653 344443 666777777777764 3444443 55666677777
Q ss_pred ecCccccCcc
Q 026675 112 LEGTAIRGLP 121 (235)
Q Consensus 112 l~~~~~~~l~ 121 (235)
+++|.+..++
T Consensus 141 l~~n~l~~~~ 150 (466)
T 1o6v_A 141 LSSNTISDIS 150 (466)
T ss_dssp EEEEEECCCG
T ss_pred CCCCccCCCh
Confidence 6666655443
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=3.5e-15 Score=121.54 Aligned_cols=151 Identities=12% Similarity=-0.002 Sum_probs=87.6
Q ss_pred hhhhhhcccCccc-cchhh--hhccCCcEEeecCCcCCcccc----cccccCCccCeeeccccccccccCCCCCCCCCCc
Q 026675 36 IVQVLWDGIDTRE-LSFAI--ELLFRLVQLTLNGCKNLERLP----RTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLL 108 (235)
Q Consensus 36 l~~~~l~~~~~~~-~~~~l--~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 108 (235)
+++++++++.+.. .|..+ .++++|+.|++++|......+ ..+..+++|++|++++|......+..++.+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4445555555543 33344 566677777777654332222 1223466777777777543333335666677777
Q ss_pred eEEecCccccC---cchh--hhcCCCCcEEeccCCCCccccch----hhhccCCccEEcccCccCCCccchhccCC---C
Q 026675 109 EIHLEGTAIRG---LPAS--IELLSGNVLLNLKDCMNLKSLPS----TINRLRSLRMLHLSSCFKLKNAPETLGKV---E 176 (235)
Q Consensus 109 ~L~l~~~~~~~---l~~~--~~~l~~L~~L~l~~~~~l~~l~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~l---~ 176 (235)
+|++++|.+.. ++.. +..+++|++|++++| .+..++. .+..+++|++|++++|......|..+..+ +
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 77777776542 2222 246677777777764 4444443 24566777778877774333336555555 5
Q ss_pred CCceeeccccc
Q 026675 177 SLEYCITSMCI 187 (235)
Q Consensus 177 ~L~~L~l~~~~ 187 (235)
+|++|++++|.
T Consensus 252 ~L~~L~Ls~N~ 262 (310)
T 4glp_A 252 ALNSLNLSFAG 262 (310)
T ss_dssp TCCCEECCSSC
T ss_pred cCCEEECCCCC
Confidence 77778887777
No 93
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.57 E-value=3.6e-14 Score=121.85 Aligned_cols=103 Identities=19% Similarity=0.276 Sum_probs=45.7
Q ss_pred ccCCccCeeeccccccccccCCCCCCCCCCceEEecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEE
Q 026675 78 SALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRML 157 (235)
Q Consensus 78 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 157 (235)
..+++|++|++++|. +..++. +..+++|+.|++++|.++.++. +..+++|+.|++++| .+..++. +..+++|+.|
T Consensus 240 ~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L 314 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN-QLEDISP-ISNLKNLTYL 314 (466)
T ss_dssp GGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEE
T ss_pred hcCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC-cccCchh-hcCCCCCCEE
Confidence 334444444444432 222222 3444555555555555444433 444555555555542 3333333 4445555555
Q ss_pred cccCccCCCccchhccCCCCCceeeccccc
Q 026675 158 HLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 158 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
++++|. ++..+. +..+++|+.|++++|.
T Consensus 315 ~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 315 TLYFNN-ISDISP-VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp ECCSSC-CSCCGG-GGGCTTCCEEECCSSC
T ss_pred ECcCCc-CCCchh-hccCccCCEeECCCCc
Confidence 555542 222222 3344455555555544
No 94
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=133.05 Aligned_cols=147 Identities=19% Similarity=0.080 Sum_probs=122.4
Q ss_pred hhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeecccccccccc-CCCCCCCCCCceEEecCccc
Q 026675 39 VLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREF-PEKTSGKDQLLEIHLEGTAI 117 (235)
Q Consensus 39 ~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~ 117 (235)
++.++..+..+|. -.++++.|++++|......+..+..+++|++|++++|.....+ |..+..+++|++|++++|.+
T Consensus 9 ~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred EEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 5566777888987 4689999999997644445778999999999999998777777 67899999999999999999
Q ss_pred cCc-chhhhcCCCCcEEeccCCCCccccchh--hhccCCccEEcccCccCCCccc-hhccCCCCCceeecccccc
Q 026675 118 RGL-PASIELLSGNVLLNLKDCMNLKSLPST--INRLRSLRMLHLSSCFKLKNAP-ETLGKVESLEYCITSMCIL 188 (235)
Q Consensus 118 ~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 188 (235)
+.+ |..+..+++|++|++++|.....++.. +..+++|++|++++|...+..+ ..++++++|++|++++|..
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 955 788999999999999997655555554 8899999999999995443333 5789999999999999984
No 95
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.56 E-value=1.1e-14 Score=130.45 Aligned_cols=147 Identities=16% Similarity=0.139 Sum_probs=121.5
Q ss_pred hhhhcccCccccchhhhhccCCcEEeecCCcCCcccc-cccccCCccCeeeccccccccccCCCCCCCCCCceEEecCcc
Q 026675 38 QVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLP-RTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTA 116 (235)
Q Consensus 38 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 116 (235)
.+++++..+.++|..+. +++++|++++|. ++.++ ..+..+++|++|++++|......|..++.+++|++|++++|.
T Consensus 8 ~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP--TNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCSSCCSCSC--TTCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eeECCCCCccccccccC--CCCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 35677778888887664 799999999975 55554 468899999999999965444456778889999999999999
Q ss_pred ccCcch-hhhcCCCCcEEeccCCCCccccc-hhhhccCCccEEcccCccCCCccchhccCCCCCceeecccccc
Q 026675 117 IRGLPA-SIELLSGNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCIL 188 (235)
Q Consensus 117 ~~~l~~-~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 188 (235)
++.+|. .+..+++|++|++++| .+..++ ..|..+++|++|++++|......+..+..+++|++|++++|..
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred cCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 998887 4889999999999996 455555 6789999999999999965555566788999999999999983
No 96
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.56 E-value=8e-15 Score=119.83 Aligned_cols=148 Identities=12% Similarity=-0.037 Sum_probs=109.8
Q ss_pred hhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCC-CCCCCCceEEecCc
Q 026675 37 VQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKT-SGKDQLLEIHLEGT 115 (235)
Q Consensus 37 ~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L~l~~~ 115 (235)
+.++++++.+..++.. .+++|+.|++++|......+..+..+++|++|++++|......+..+ ..+++|++|++++|
T Consensus 102 ~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 102 ETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp CEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 3334444444444332 35677888888865333334467788999999999965443334444 46899999999999
Q ss_pred cccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccccc
Q 026675 116 AIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILI 189 (235)
Q Consensus 116 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 189 (235)
.++.++. ...+++|+.|++++ +.+..+|..+..+++|+.|++++| .++.+|..+..+++|+.|++++|...
T Consensus 180 ~l~~~~~-~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 180 FIYDVKG-QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCCEEEC-CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred cCccccc-ccccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 9987764 33589999999998 467777777899999999999998 67788888889999999999999843
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.55 E-value=8.7e-14 Score=107.90 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=114.8
Q ss_pred cEEeecCCcCCcccccccccCCccCeeeccccccccccC-CCCCCCCCCceEEecCccccCc-chhhhcCCCCcEEeccC
Q 026675 60 VQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKD 137 (235)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~ 137 (235)
+.++.++ +.++.+|..+ .++|+.|++++| .++.++ ..+..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 14 ~~v~c~~-~~l~~iP~~l--~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRG-KGLTEIPTNL--PETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTT-SCCSSCCSSC--CTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCC-CCcCcCCCcc--CcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 5678888 4578888765 378999999995 566665 4788999999999999999965 77899999999999998
Q ss_pred CCCccccch-hhhccCCccEEcccCccCCCccchhccCCCCCceeeccccccccccccCCCCcccccCcCcccccccchh
Q 026675 138 CMNLKSLPS-TINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILINVVRQKDSDSWKKNVDKGIKLSTTAIS 216 (235)
Q Consensus 138 ~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~l~~l~~~ 216 (235)
+.+..+|. .|..+++|+.|++++|......+..+..+++|++|++++|. ++.++. ..+..+.+++.++++
T Consensus 90 -N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~----l~~~~~----~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 90 -NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK----LQTIAK----GTFSPLRAIQTMHLA 160 (220)
T ss_dssp -SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----CSCCCT----TTTTTCTTCCEEECC
T ss_pred -CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc----CCEECH----HHHhCCCCCCEEEeC
Confidence 56777774 46889999999999995444445678899999999999999 444332 012223446667777
Q ss_pred hhhccc
Q 026675 217 ACSLAC 222 (235)
Q Consensus 217 ~~~~~~ 222 (235)
++.+.|
T Consensus 161 ~N~~~c 166 (220)
T 2v9t_B 161 QNPFIC 166 (220)
T ss_dssp SSCEEC
T ss_pred CCCcCC
Confidence 666644
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=1.3e-14 Score=120.21 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=111.6
Q ss_pred cchhhhhhcccCccccch-hhhhccCCcEEeecCCcCCccccc-ccccCCccCeeeccccccccccC-CCCCCCCCCceE
Q 026675 34 PDIVQVLWDGIDTRELSF-AIELLFRLVQLTLNGCKNLERLPR-TTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEI 110 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L 110 (235)
+++++++++++.+.++|+ +|.++++|++|++++|...+.++. .|.+++++..+....++.++.++ ..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 467888999999999987 688999999999999876666654 46778887766555546676664 567888899999
Q ss_pred EecCccccCcchh--------------------------hhcC-CCCcEEeccCCCCccccchhhhccCCccEEcccCcc
Q 026675 111 HLEGTAIRGLPAS--------------------------IELL-SGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCF 163 (235)
Q Consensus 111 ~l~~~~~~~l~~~--------------------------~~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 163 (235)
++++|.+..++.. +..+ ..++.|++++ +.++.++..+...++|+.+++.++.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhccccchhHHhhccCC
Confidence 9988877644321 1111 2456666666 4566666555566778888887766
Q ss_pred CCCccch-hccCCCCCceeeccccc
Q 026675 164 KLKNAPE-TLGKVESLEYCITSMCI 187 (235)
Q Consensus 164 ~~~~~~~-~~~~l~~L~~L~l~~~~ 187 (235)
.++.+|. .+..+++|++|++++|.
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSC
T ss_pred cccCCCHHHhccCcccchhhcCCCC
Confidence 7788875 46788889999999887
No 99
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.55 E-value=2.1e-14 Score=126.01 Aligned_cols=144 Identities=16% Similarity=0.063 Sum_probs=113.3
Q ss_pred hhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCcc
Q 026675 37 VQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTA 116 (235)
Q Consensus 37 ~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 116 (235)
+.++++++.+..+|..+. ++|+.|++++|......+..+..+++|++|++++|......|..+..+++|++|++++|.
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 567888888988998664 899999999976433334678889999999999964434346778899999999999999
Q ss_pred ccCcchhhhcCCCCcEEeccCCCCcccc--chhhhccCCccEEcccCccCCCccchhccCCCCC--ceeecccccc
Q 026675 117 IRGLPASIELLSGNVLLNLKDCMNLKSL--PSTINRLRSLRMLHLSSCFKLKNAPETLGKVESL--EYCITSMCIL 188 (235)
Q Consensus 117 ~~~l~~~~~~l~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 188 (235)
++.+|.. .+++|++|++++| .+..+ |..++++++|++|++++|. ++. ..+..+++| ++|++++|..
T Consensus 112 l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 112 LQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred CCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccc
Confidence 9988876 8999999999985 45554 4679999999999999984 333 234455555 9999999874
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.54 E-value=9.3e-14 Score=107.74 Aligned_cols=149 Identities=18% Similarity=0.161 Sum_probs=112.9
Q ss_pred CcEEeecCCcCCcccccccccCCccCeeeccccccccccC--CCCCCCCCCceEEecCccccCcch-hhhcCCCCcEEec
Q 026675 59 LVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFP--EKTSGKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNL 135 (235)
Q Consensus 59 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l 135 (235)
-+.++++++ .++.+|..+ ...+++|++++| .++.++ ..+..+++|++|++++|.++.++. .+..+++|++|++
T Consensus 13 ~~~l~~s~n-~l~~iP~~~--~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQ-KLNKIPEHI--PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSS-CCSSCCSCC--CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCCC-CcccCccCC--CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 358899984 577788765 456789999995 566663 347889999999999999997665 6889999999999
Q ss_pred cCCCCcccc-chhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccccccccccC-CC-CcccccCcCcccccc
Q 026675 136 KDCMNLKSL-PSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILINVVRQK-DS-DSWKKNVDKGIKLST 212 (235)
Q Consensus 136 ~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~-~~~l~~L~~~~~l~~ 212 (235)
++| .+..+ +..|..+++|+.|++++|......|..+..+++|++|++++|. ++.+ +. +. .+.+|+.
T Consensus 89 s~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~----l~~~~~~~~~------~l~~L~~ 157 (220)
T 2v70_A 89 TSN-RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ----ITTVAPGAFD------TLHSLST 157 (220)
T ss_dssp CSS-CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC----CCCBCTTTTT------TCTTCCE
T ss_pred CCC-ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc----CCEECHHHhc------CCCCCCE
Confidence 995 55555 4568999999999999995444446778899999999999998 4433 21 33 2344566
Q ss_pred cchhhhhccc
Q 026675 213 TAISACSLAC 222 (235)
Q Consensus 213 l~~~~~~~~~ 222 (235)
++++++...|
T Consensus 158 L~L~~N~l~c 167 (220)
T 2v70_A 158 LNLLANPFNC 167 (220)
T ss_dssp EECCSCCEEC
T ss_pred EEecCcCCcC
Confidence 6776666543
No 101
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=1.4e-14 Score=125.13 Aligned_cols=148 Identities=12% Similarity=-0.037 Sum_probs=111.5
Q ss_pred hhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCC-CCCCCceEEecCc
Q 026675 37 VQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTS-GKDQLLEIHLEGT 115 (235)
Q Consensus 37 ~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l~~~ 115 (235)
+.++++++.+..+++. .+++|+.|++++|......|..+..+++|++|++++|......|..+. .+++|++|++++|
T Consensus 102 ~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 102 ETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp CEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 3334444444444432 356778888888654444466678889999999999655444555554 6889999999999
Q ss_pred cccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccccc
Q 026675 116 AIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILI 189 (235)
Q Consensus 116 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 189 (235)
.++.++. ...+++|+.|++++ +.+..+|..+..+++|+.|++++| .++.+|..+..+++|+.|++++|...
T Consensus 180 ~l~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 180 FIYDVKG-QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCEEEC-CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ccccccc-cccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCc
Confidence 9887754 44689999999998 467777777899999999999998 56788988889999999999999843
No 102
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=2.6e-14 Score=106.93 Aligned_cols=129 Identities=17% Similarity=0.157 Sum_probs=99.1
Q ss_pred hhhccCCcEEeecCCcCCcccccccccCC-ccCeeeccccccccccCCCCCCCCCCceEEecCccccCcchhh-hcCCCC
Q 026675 53 IELLFRLVQLTLNGCKNLERLPRTTSALK-YLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPASI-ELLSGN 130 (235)
Q Consensus 53 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~-~~l~~L 130 (235)
+.++.+|+.|++++|. ++.++. +..+. +|++|++++| .++.+ ..+..+++|++|++++|.++.+|..+ ..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4567888999998864 556654 44444 8999999985 45556 56778889999999999888777555 788899
Q ss_pred cEEeccCCCCccccch--hhhccCCccEEcccCccCCCccchh----ccCCCCCceeeccccc
Q 026675 131 VLLNLKDCMNLKSLPS--TINRLRSLRMLHLSSCFKLKNAPET----LGKVESLEYCITSMCI 187 (235)
Q Consensus 131 ~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~ 187 (235)
+.|++++| .+..+|. .+..+++|+.|++++|. +..+|.. +..+++|+.|+++.|.
T Consensus 91 ~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999884 6677775 67888889999998884 5566653 7788889999888877
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=1.1e-14 Score=105.84 Aligned_cols=125 Identities=19% Similarity=0.220 Sum_probs=104.3
Q ss_pred cchhhhhhcccCcc--ccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEE
Q 026675 34 PDIVQVLWDGIDTR--ELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIH 111 (235)
Q Consensus 34 ~~l~~~~l~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 111 (235)
+.++.++++++.+. .+|..+..+++|+.|++++|. ++.+ ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45677888888887 788888999999999999974 5555 6688899999999999654444777777799999999
Q ss_pred ecCccccCcc--hhhhcCCCCcEEeccCCCCccccch----hhhccCCccEEcccC
Q 026675 112 LEGTAIRGLP--ASIELLSGNVLLNLKDCMNLKSLPS----TINRLRSLRMLHLSS 161 (235)
Q Consensus 112 l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~l~~l~~----~~~~~~~L~~L~l~~ 161 (235)
+++|.++.++ ..+..+++|+.|++++| .+..++. .+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999865 77899999999999996 5666654 688999999999863
No 104
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.52 E-value=1.8e-14 Score=130.07 Aligned_cols=119 Identities=16% Similarity=0.129 Sum_probs=65.2
Q ss_pred chhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCccccCcchhhhcCCC
Q 026675 50 SFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPASIELLSG 129 (235)
Q Consensus 50 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~ 129 (235)
+..+..++.|+.|++++|. +..+|..+..+++|++|+|++| .++.+|..++.+++|++|++++|.++.+|..++.+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 3445556666666666643 3455555555666666666663 3445565555666666666666666656666666666
Q ss_pred CcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchh
Q 026675 130 NVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPET 171 (235)
Q Consensus 130 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 171 (235)
|++|++++| .+..+|..|+.+++|+.|++++|.....+|..
T Consensus 295 L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 295 LKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp CSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 666666653 44555555666666666666665433334433
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.52 E-value=4.5e-14 Score=117.47 Aligned_cols=151 Identities=22% Similarity=0.157 Sum_probs=121.4
Q ss_pred cchhhhhhcccCccccchh-hh-hccCCcEEeecCCcCCcccc-cccccCCccCeeeccccccccccC-CCCCCCCCCce
Q 026675 34 PDIVQVLWDGIDTRELSFA-IE-LLFRLVQLTLNGCKNLERLP-RTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLE 109 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~-l~-~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~ 109 (235)
..++.++++++.+..+++. +. ++++|+.|++++|. +..++ ..+..+++|++|++++| .++.++ ..+..+++|++
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCE
Confidence 3467889999999998875 44 89999999999965 55555 56889999999999995 466665 46889999999
Q ss_pred EEecCccccCc-chhhhcCCCCcEEeccCCCCccccchhh----hccCCccEEcccCccCCCccc-hhccCCCC--Ccee
Q 026675 110 IHLEGTAIRGL-PASIELLSGNVLLNLKDCMNLKSLPSTI----NRLRSLRMLHLSSCFKLKNAP-ETLGKVES--LEYC 181 (235)
Q Consensus 110 L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~~----~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~--L~~L 181 (235)
|++++|.++.+ +..+..+++|+.|++++ +.+..+|..+ ..+++|+.|++++| .++.+| ..+..++. ++.|
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGL 194 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTE
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceE
Confidence 99999999965 56788999999999998 5777787544 57999999999998 566666 45666665 4789
Q ss_pred ecccccc
Q 026675 182 ITSMCIL 188 (235)
Q Consensus 182 ~l~~~~~ 188 (235)
++++|..
T Consensus 195 ~l~~N~~ 201 (361)
T 2xot_A 195 YLHNNPL 201 (361)
T ss_dssp ECCSSCE
T ss_pred EecCCCc
Confidence 9999873
No 106
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=9.3e-16 Score=128.62 Aligned_cols=154 Identities=16% Similarity=0.105 Sum_probs=72.4
Q ss_pred cchhhhhhcccCccc-----cchhhhhccCCcEEeecCCcCCcc----cccccccC---------CccCeeeccccccc-
Q 026675 34 PDIVQVLWDGIDTRE-----LSFAIELLFRLVQLTLNGCKNLER----LPRTTSAL---------KYLSTLNLSSLLKF- 94 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l---------~~L~~L~l~~~~~~- 94 (235)
+.+++++++++.+.. +|..+.++++|++|++++|..... ++..+..+ ++|++|++++|...
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 344444444444433 444555555555555555432111 11112222 55555555554322
Q ss_pred cccC---CCCCCCCCCceEEecCcccc--C----cchhhhcCCCCcEEeccCCCCc----cccchhhhccCCccEEcccC
Q 026675 95 REFP---EKTSGKDQLLEIHLEGTAIR--G----LPASIELLSGNVLLNLKDCMNL----KSLPSTINRLRSLRMLHLSS 161 (235)
Q Consensus 95 ~~~p---~~~~~l~~L~~L~l~~~~~~--~----l~~~~~~l~~L~~L~l~~~~~l----~~l~~~~~~~~~L~~L~l~~ 161 (235)
..++ ..+..+++|++|++++|.++ + .+..+..+++|+.|++++|..- ..+|..+..+++|+.|++++
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 1222 23344555666666666554 1 1224455566666666654321 34455555566666666666
Q ss_pred ccCCCc----cchhc--cCCCCCceeeccccc
Q 026675 162 CFKLKN----APETL--GKVESLEYCITSMCI 187 (235)
Q Consensus 162 ~~~~~~----~~~~~--~~l~~L~~L~l~~~~ 187 (235)
|..... ++..+ +.+++|++|++++|.
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 532211 23333 225566666666665
No 107
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=3.1e-15 Score=125.40 Aligned_cols=133 Identities=12% Similarity=-0.012 Sum_probs=83.3
Q ss_pred hhccCCcEEeecCCcCCc----ccccccccCCccCeeecccccccc----ccCCCCCCC---------CCCceEEecCcc
Q 026675 54 ELLFRLVQLTLNGCKNLE----RLPRTTSALKYLSTLNLSSLLKFR----EFPEKTSGK---------DQLLEIHLEGTA 116 (235)
Q Consensus 54 ~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~----~~p~~~~~l---------~~L~~L~l~~~~ 116 (235)
..+++|++|++++|.... .++..+..+++|++|++++|.... .++..+..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 566777777777754333 245556667777777777754321 122222223 677777777777
Q ss_pred cc--Ccc---hhhhcCCCCcEEeccCCCCcc------ccchhhhccCCccEEcccCccCC----CccchhccCCCCCcee
Q 026675 117 IR--GLP---ASIELLSGNVLLNLKDCMNLK------SLPSTINRLRSLRMLHLSSCFKL----KNAPETLGKVESLEYC 181 (235)
Q Consensus 117 ~~--~l~---~~~~~l~~L~~L~l~~~~~l~------~l~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L 181 (235)
++ .++ ..+..+++|+.|++++| .+. ..+..+..+++|+.|++++|... ..+|..+..+++|++|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 65 333 35567777888887775 333 12325667778888888877431 4566667777888888
Q ss_pred eccccc
Q 026675 182 ITSMCI 187 (235)
Q Consensus 182 ~l~~~~ 187 (235)
++++|.
T Consensus 250 ~L~~n~ 255 (386)
T 2ca6_A 250 GLNDCL 255 (386)
T ss_dssp ECTTCC
T ss_pred ECCCCC
Confidence 888877
No 108
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.49 E-value=1.7e-13 Score=121.09 Aligned_cols=162 Identities=19% Similarity=0.170 Sum_probs=101.9
Q ss_pred hhhhhccCCcEEeecCCcCCcccc-cccccCCccCeeeccccccccccCCCCCCCCCCceEEecCcccc--CcchhhhcC
Q 026675 51 FAIELLFRLVQLTLNGCKNLERLP-RTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIR--GLPASIELL 127 (235)
Q Consensus 51 ~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~l~~~~~~l 127 (235)
..+..+++|+.+++..++.....+ ..+..+.+++.++++.|......+..+..+++|+.|++++|... ..|..+..+
T Consensus 414 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l 493 (635)
T 4g8a_A 414 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 493 (635)
T ss_dssp SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred ccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhc
Confidence 334444555555555443332222 23455666777777775444444556667788888888887543 356667788
Q ss_pred CCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccc-hhccCCCCCceeeccccccccccccCCC--CcccccC
Q 026675 128 SGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAP-ETLGKVESLEYCITSMCILINVVRQKDS--DSWKKNV 204 (235)
Q Consensus 128 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~l~~L 204 (235)
++|++|++++|.-....|..|..+++|+.|++++| .++.++ ..+..+++|++|++++|+ ++..+. +..+
T Consensus 494 ~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~l~~l--- 565 (635)
T 4g8a_A 494 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH----IMTSKKQELQHF--- 565 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSC----CCBCCSSCTTCC---
T ss_pred cccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCc----CCCCCHHHHHhh---
Confidence 88888888886433334567888888888888887 455544 567788888888888888 333221 2221
Q ss_pred cCcccccccchhhhhccc
Q 026675 205 DKGIKLSTTAISACSLAC 222 (235)
Q Consensus 205 ~~~~~l~~l~~~~~~~~~ 222 (235)
..+|+.++++++++.|
T Consensus 566 --~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 566 --PSSLAFLNLTQNDFAC 581 (635)
T ss_dssp --CTTCCEEECTTCCBCC
T ss_pred --hCcCCEEEeeCCCCcc
Confidence 1357777887777765
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=1.7e-13 Score=120.17 Aligned_cols=131 Identities=22% Similarity=0.233 Sum_probs=63.0
Q ss_pred chhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecC
Q 026675 35 DIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEG 114 (235)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 114 (235)
.++.++++++.+..+| ..+++|+.|++++|. ++.+|. +.. +|++|++++| .++.+|. .+++|++|++++
T Consensus 81 ~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 81 QITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINADN 149 (571)
T ss_dssp TCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCS
T ss_pred CCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCCC
Confidence 3444444555444444 234455555555532 333444 322 4555555552 3333444 345555555555
Q ss_pred ccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCC-------ceeeccccc
Q 026675 115 TAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESL-------EYCITSMCI 187 (235)
Q Consensus 115 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L-------~~L~l~~~~ 187 (235)
|.++.+|. .+++|+.|++++| .+..+|. +. ++|+.|++++| .++.+|. +.. +| +.|++++|.
T Consensus 150 N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 150 NQLTMLPE---LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSSC
T ss_pred CccCcCCC---cCCCcCEEECCCC-CCCCcch-hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCCc
Confidence 55555544 3455555555553 3444554 33 55666666655 3445554 322 44 666666665
No 110
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=1.3e-13 Score=104.66 Aligned_cols=124 Identities=24% Similarity=0.229 Sum_probs=85.4
Q ss_pred hhhhhcccCccccchhhhhccCCcEEeecCCcCCccccc--ccccCCccCeeeccccccccccCCCCCCCCCCceEEecC
Q 026675 37 VQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPR--TTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEG 114 (235)
Q Consensus 37 ~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 114 (235)
+.++++++.+.++|..+. .+++.|++++|. ++.++. .+..+++|++|++++|......|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 345667777777777553 378888888854 555544 267788888888888543333466777788888888888
Q ss_pred ccccCcch-hhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCcc
Q 026675 115 TAIRGLPA-SIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCF 163 (235)
Q Consensus 115 ~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 163 (235)
|.++.++. .+..+++|++|++++|......|..+..+++|+.|++++|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 88775544 36677888888888754444446667777788888887774
No 111
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=3e-13 Score=102.64 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=103.4
Q ss_pred cEEeecCCcCCcccccccccCCccCeeeccccccccccCC--CCCCCCCCceEEecCccccCc-chhhhcCCCCcEEecc
Q 026675 60 VQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPE--KTSGKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLK 136 (235)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~ 136 (235)
+.++++++ .++.+|..+. .+|++|++++| .++.++. .+..+++|++|++++|.++.+ |..+..+++|+.|+++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCC-CcCcCccCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 78899995 5788887653 48999999995 5666664 388999999999999999966 6788999999999999
Q ss_pred CCCCcccc-chhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccccc
Q 026675 137 DCMNLKSL-PSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILI 189 (235)
Q Consensus 137 ~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 189 (235)
+| .+..+ +..+..+++|+.|++++|......|..+..+++|++|++++|...
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 EN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 95 55555 456889999999999999544455778889999999999999853
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=7.2e-14 Score=122.74 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=101.2
Q ss_pred CCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCccccCcchhhhcCCCCcEEeccC
Q 026675 58 RLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKD 137 (235)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~ 137 (235)
.|+.|++++| .++.+|. +..+++|++|++++| .++.+|..++.+++|++|++++|.++.+| .++.+++|+.|++++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 5899999996 5677886 899999999999995 56689999999999999999999999998 899999999999998
Q ss_pred CCCcccc--chhhhccCCccEEcccCccCCCccchh----ccCCCCCceee
Q 026675 138 CMNLKSL--PSTINRLRSLRMLHLSSCFKLKNAPET----LGKVESLEYCI 182 (235)
Q Consensus 138 ~~~l~~l--~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~ 182 (235)
| .+..+ |..++.+++|+.|++++|. ++..|.. +..+++|+.|+
T Consensus 518 N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 518 N-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp S-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred C-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 5 66666 8889999999999999984 5554432 33477888775
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=2.5e-14 Score=118.95 Aligned_cols=151 Identities=14% Similarity=0.081 Sum_probs=71.9
Q ss_pred chhhhhhcccCcccc-chhhhhc-----cCCcEEeecCCcCCcccccc----cccC-CccCeeeccccccccccC-C---
Q 026675 35 DIVQVLWDGIDTREL-SFAIELL-----FRLVQLTLNGCKNLERLPRT----TSAL-KYLSTLNLSSLLKFREFP-E--- 99 (235)
Q Consensus 35 ~l~~~~l~~~~~~~~-~~~l~~l-----~~L~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~p-~--- 99 (235)
.+++++++++.+... +..+..+ ++|++|++++|......+.. +..+ ++|++|++++|. ++..+ .
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFK 130 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHH
Confidence 344455555555443 2233333 55666666554422122221 2222 556666666643 22222 1
Q ss_pred -CCCC-CCCCceEEecCcccc-----CcchhhhcCC-CCcEEeccCCCCccccchh----hhcc-CCccEEcccCccCCC
Q 026675 100 -KTSG-KDQLLEIHLEGTAIR-----GLPASIELLS-GNVLLNLKDCMNLKSLPST----INRL-RSLRMLHLSSCFKLK 166 (235)
Q Consensus 100 -~~~~-l~~L~~L~l~~~~~~-----~l~~~~~~l~-~L~~L~l~~~~~l~~l~~~----~~~~-~~L~~L~l~~~~~~~ 166 (235)
.+.. ..+|++|++++|.++ .++..+..++ +|+.|++++|.-....+.. +... ++|+.|++++|. ++
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~ 209 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LG 209 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GG
T ss_pred HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CC
Confidence 1222 246666666666555 2333344443 6666666664322222222 2333 467777777663 33
Q ss_pred c-----cchhccC-CCCCceeeccccc
Q 026675 167 N-----APETLGK-VESLEYCITSMCI 187 (235)
Q Consensus 167 ~-----~~~~~~~-l~~L~~L~l~~~~ 187 (235)
. ++..+.. .++|++|++++|.
T Consensus 210 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 210 LKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp GSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred hhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 3 4444444 3467777777766
No 114
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.47 E-value=3e-14 Score=122.04 Aligned_cols=137 Identities=18% Similarity=0.191 Sum_probs=88.9
Q ss_pred cchhhhhhcccCcc-ccchhhhhccC-------------CcEEeecCCcCCcccccccccCCccCeeeccccccccccCC
Q 026675 34 PDIVQVLWDGIDTR-ELSFAIELLFR-------------LVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPE 99 (235)
Q Consensus 34 ~~l~~~~l~~~~~~-~~~~~l~~l~~-------------L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~ 99 (235)
+.+++++++++.+. .+|..++++++ +++|++++|. ++.+|.. .++|++|++++| .++.+|.
T Consensus 34 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~---~~~L~~L~l~~n-~l~~lp~ 108 (454)
T 1jl5_A 34 KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPEL---PPHLESLVASCN-SLTELPE 108 (454)
T ss_dssp CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSC---CTTCSEEECCSS-CCSSCCC
T ss_pred cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCC---cCCCCEEEccCC-cCCcccc
Confidence 33455555554443 45555555544 3666666643 4445442 356777777773 4444664
Q ss_pred CCCCCCCCceEEecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCc
Q 026675 100 KTSGKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLE 179 (235)
Q Consensus 100 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 179 (235)
. +++|++|++++|.++.++.. .++|++|++++| .+..+| .++.+++|++|++++| .++.+|.. ..+|+
T Consensus 109 ~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~---~~~L~ 176 (454)
T 1jl5_A 109 L---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNN-SLKKLPDL---PPSLE 176 (454)
T ss_dssp C---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSCCCCC---CTTCC
T ss_pred c---cCCCcEEECCCCccCcccCC---CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCC-cCcccCCC---ccccc
Confidence 3 36778888888777765532 268888888884 566687 4888899999999988 45666653 35888
Q ss_pred eeeccccc
Q 026675 180 YCITSMCI 187 (235)
Q Consensus 180 ~L~l~~~~ 187 (235)
+|++++|.
T Consensus 177 ~L~L~~n~ 184 (454)
T 1jl5_A 177 FIAAGNNQ 184 (454)
T ss_dssp EEECCSSC
T ss_pred EEECcCCc
Confidence 99999887
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.5e-13 Score=102.73 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=104.6
Q ss_pred ccchhhhhhcccCccccchhhhhcc-CCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCC-CCCCCCceE
Q 026675 33 FPDIVQVLWDGIDTRELSFAIELLF-RLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKT-SGKDQLLEI 110 (235)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L 110 (235)
...++.++++++.+..+|. +..+. +|++|++++|. ++.+ ..+..+++|++|++++| .++.+|..+ ..+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEE
Confidence 3456778889999988865 45554 99999999965 5556 56888999999999995 567777555 789999999
Q ss_pred EecCccccCcch--hhhcCCCCcEEeccCCCCccccchh----hhccCCccEEcccCcc
Q 026675 111 HLEGTAIRGLPA--SIELLSGNVLLNLKDCMNLKSLPST----INRLRSLRMLHLSSCF 163 (235)
Q Consensus 111 ~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~l~~l~~~----~~~~~~L~~L~l~~~~ 163 (235)
++++|.+..+|. .+..+++|+.|++++| .+..+|.. +..+++|+.||++.|.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 999999998887 7889999999999995 56677764 8899999999999984
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=4.1e-13 Score=117.80 Aligned_cols=132 Identities=22% Similarity=0.272 Sum_probs=110.5
Q ss_pred chhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecC
Q 026675 35 DIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEG 114 (235)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 114 (235)
.++.++++++.+..+|..+ +++|+.|++++|. ++.+| ..+++|++|++++| .++.+|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 5667888888998888866 3889999999964 66777 44789999999995 5666887 554 999999999
Q ss_pred ccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccc
Q 026675 115 TAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 115 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
|.++.+|. .+++|+.|++++ +.+..+|. .+++|+.|++++| .++.+|. +. ++|+.|++++|.
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADN-NQLTMLPE---LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSSC
T ss_pred CcCCCCCC---cCccccEEeCCC-CccCcCCC---cCCCcCEEECCCC-CCCCcch-hh--CCCCEEECcCCC
Confidence 99999887 689999999998 46777876 5789999999998 5677887 55 899999999998
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=1.6e-13 Score=123.91 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=86.5
Q ss_pred cchhhhhhcccCccccchhhhhccCCcEEeecCC----cCCcccccccccCCccCeeeccccccccccCCCCCCCCCCce
Q 026675 34 PDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGC----KNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLE 109 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~----~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 109 (235)
+.++.+.+.++.+...+..+.....|..+.+... +.+...+..+..+..|+.|++++| .+..+|..+..+++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTR 251 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCE
Confidence 3455666666666666655544445555444331 223344556777888888888884 45577776777888888
Q ss_pred EEecCccccCcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccchhccCCCCCceeeccccccc
Q 026675 110 IHLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMCILI 189 (235)
Q Consensus 110 L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 189 (235)
|++++|.++.+|..+..+++|++|+|++| .+..+|..++.+++|++|++++| .++.+|..++.+++|++|++++|...
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccC
Confidence 88888888888888888888888888874 56678877888888888888887 56778877888888888888888753
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=2.2e-15 Score=114.93 Aligned_cols=143 Identities=17% Similarity=0.222 Sum_probs=93.5
Q ss_pred chhhhhhccc--CccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEe
Q 026675 35 DIVQVLWDGI--DTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHL 112 (235)
Q Consensus 35 ~l~~~~l~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 112 (235)
+++.+.+.+. .+.++|..+.++++|++|++++|. ++.+| .+..+++|++|++++| .++.+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEEC
Confidence 3444445443 455666677778888888887754 55566 6677778888888774 45567766666677888888
Q ss_pred cCccccCcchhhhcCCCCcEEeccCCCCccccch--hhhccCCccEEcccCccCCCccch----------hccCCCCCce
Q 026675 113 EGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPS--TINRLRSLRMLHLSSCFKLKNAPE----------TLGKVESLEY 180 (235)
Q Consensus 113 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~----------~~~~l~~L~~ 180 (235)
++|.++.+| .+..+++|+.|++++| .+..++. .+..+++|++|++++|......|. .+..+++|+.
T Consensus 101 ~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 101 SYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp EEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred cCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 888777766 5677777777777763 5555443 566777777777777743222222 2556677776
Q ss_pred ee
Q 026675 181 CI 182 (235)
Q Consensus 181 L~ 182 (235)
|+
T Consensus 179 Ld 180 (198)
T 1ds9_A 179 LD 180 (198)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 119
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.44 E-value=7.9e-13 Score=117.19 Aligned_cols=97 Identities=25% Similarity=0.295 Sum_probs=54.8
Q ss_pred cchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEec
Q 026675 34 PDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLE 113 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 113 (235)
++++.++++++.+..+|. .+++|++|++++|. ++.+|. .+++|++|++++| .++.+|. .+++|+.|+++
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECC
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECC
Confidence 445556666666665555 35666666666643 445554 3566666666663 4444554 34566666666
Q ss_pred CccccCcchhhhcCCCCcEEeccCCCCccccc
Q 026675 114 GTAIRGLPASIELLSGNVLLNLKDCMNLKSLP 145 (235)
Q Consensus 114 ~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~ 145 (235)
+|.++.+|.. +++|++|++++| .+..+|
T Consensus 130 ~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~ 157 (622)
T 3g06_A 130 GNQLTSLPVL---PPGLQELSVSDN-QLASLP 157 (622)
T ss_dssp SSCCSCCCCC---CTTCCEEECCSS-CCSCCC
T ss_pred CCCCCcCCCC---CCCCCEEECcCC-cCCCcC
Confidence 6666655542 356666666664 444444
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.43 E-value=8.2e-13 Score=100.33 Aligned_cols=120 Identities=23% Similarity=0.336 Sum_probs=75.5
Q ss_pred hhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccC-CCCCCCCCCceEEecCcc
Q 026675 38 QVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIHLEGTA 116 (235)
Q Consensus 38 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~ 116 (235)
.+.++++.+.++|..+. ++|+.|++++| .++.+|..+..+++|++|++++| .++.++ ..+..+++|++|++++|.
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 35566666666766542 56777777774 35566666667777777777774 344443 456667777777777777
Q ss_pred ccCcch-hhhcCCCCcEEeccCCCCccccch-hhhccCCccEEcccCc
Q 026675 117 IRGLPA-SIELLSGNVLLNLKDCMNLKSLPS-TINRLRSLRMLHLSSC 162 (235)
Q Consensus 117 ~~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~ 162 (235)
++.++. .+..+++|+.|++++ +.+..+|. .|..+++|+.|++++|
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCC
Confidence 765543 456667777777766 34445543 4566666677766665
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.43 E-value=1.4e-12 Score=99.05 Aligned_cols=123 Identities=24% Similarity=0.323 Sum_probs=103.4
Q ss_pred cEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCccccCcch-hhhcCCCCcEEeccCC
Q 026675 60 VQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDC 138 (235)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~ 138 (235)
+.++++++ .++.+|..+ .++|++|++++ +.++.+|..+..+++|++|++++|.++.++. .+..+++|+.|++++|
T Consensus 13 ~~l~~~~~-~l~~ip~~~--~~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGI--PRDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTS-CCSSCCSCC--CTTCCEEECCS-SCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCC-CCCcCCCCC--CCCCCEEECCC-CcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 67888884 577888765 46899999999 5677898889999999999999999997764 5889999999999995
Q ss_pred CCccccc-hhhhccCCccEEcccCccCCCccch-hccCCCCCceeecccccc
Q 026675 139 MNLKSLP-STINRLRSLRMLHLSSCFKLKNAPE-TLGKVESLEYCITSMCIL 188 (235)
Q Consensus 139 ~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~ 188 (235)
.+..++ ..|..+++|+.|++++| .++.+|. .+..+++|+.|++++|..
T Consensus 89 -~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 -RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp -CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred -ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 565555 57899999999999998 5666665 578899999999999984
No 122
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.43 E-value=9.4e-13 Score=112.78 Aligned_cols=74 Identities=18% Similarity=0.276 Sum_probs=33.7
Q ss_pred cCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCccccCcchhhhcCCCCcEEecc
Q 026675 57 FRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLK 136 (235)
Q Consensus 57 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 136 (235)
++|++|++++|. ++.+| .+..+++|++|++++| .++.+|... .+|++|++++|.++.+| .+..+++|+.|+++
T Consensus 131 ~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECC
Confidence 355555555543 33344 3455555555555553 233344321 24444444444444444 24444444444444
Q ss_pred C
Q 026675 137 D 137 (235)
Q Consensus 137 ~ 137 (235)
+
T Consensus 204 ~ 204 (454)
T 1jl5_A 204 N 204 (454)
T ss_dssp S
T ss_pred C
Confidence 4
No 123
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.42 E-value=1.4e-12 Score=115.57 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=32.4
Q ss_pred cccchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccc
Q 026675 32 KFPDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSS 90 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 90 (235)
..++++.++++++.+..+|. .+++|++|++++|. ++.+|. .+++|+.|++++
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCS
T ss_pred cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCC
Confidence 34567777888888877776 56777788877753 444443 234444444444
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=4.3e-15 Score=113.36 Aligned_cols=133 Identities=23% Similarity=0.184 Sum_probs=108.4
Q ss_pred hhhhccCCcEEeecCCcCCccc------ccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCccccCcchhhh
Q 026675 52 AIELLFRLVQLTLNGCKNLERL------PRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPASIE 125 (235)
Q Consensus 52 ~l~~l~~L~~L~l~~~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~ 125 (235)
.+.....++.++++.+...... |..+..+++|++|++++| .++.+| .+..+++|++|++++|.++.+|..+.
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~ 90 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDA 90 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHH
T ss_pred HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhh
Confidence 3455666666666665443343 447888999999999995 566688 78889999999999999999998888
Q ss_pred cCCCCcEEeccCCCCccccchhhhccCCccEEcccCccCCCccch--hccCCCCCceeeccccccc
Q 026675 126 LLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCFKLKNAPE--TLGKVESLEYCITSMCILI 189 (235)
Q Consensus 126 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~ 189 (235)
.+++|+.|++++| .+..+| .+..+++|+.|++++| .++.++. .+..+++|++|++++|...
T Consensus 91 ~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 91 VADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCcCCEEECcCC-cCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 8899999999985 777777 4889999999999998 5666554 6889999999999999843
No 125
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.38 E-value=2.7e-14 Score=122.04 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=14.8
Q ss_pred cccccccchhhhhccchhhHHhhhhCC
Q 026675 207 GIKLSTTAISACSLACHWLIQTSRAMP 233 (235)
Q Consensus 207 ~~~l~~l~~~~~~~~~~~l~~l~~~~~ 233 (235)
+++|+.++++++......+..+..++|
T Consensus 397 ~~~L~~L~l~~N~i~~~~~~~l~~~l~ 423 (461)
T 1z7x_W 397 NHSLRELDLSNNCLGDAGILQLVESVR 423 (461)
T ss_dssp CCCCCEEECCSSSCCHHHHHHHHHHHT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHhc
Confidence 445666666666555555555554443
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=2.6e-13 Score=112.79 Aligned_cols=188 Identities=12% Similarity=-0.004 Sum_probs=118.6
Q ss_pred hhhhhhcccCccccc-----hhhhhcc-CCcEEeecCCcCCcccccccccC-----CccCeeeccccccccccCC----C
Q 026675 36 IVQVLWDGIDTRELS-----FAIELLF-RLVQLTLNGCKNLERLPRTTSAL-----KYLSTLNLSSLLKFREFPE----K 100 (235)
Q Consensus 36 l~~~~l~~~~~~~~~-----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~p~----~ 100 (235)
+++++++++.+...+ ..+.+++ +|++|++++|......+..+..+ ++|++|++++|......+. .
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 667777777777665 5667787 89999999975433334444443 8899999999653322222 2
Q ss_pred CCCC-CCCceEEecCccccCcch-h----hhc-CCCCcEEeccCCCCcc----ccchhhhccC-CccEEcccCccCCCcc
Q 026675 101 TSGK-DQLLEIHLEGTAIRGLPA-S----IEL-LSGNVLLNLKDCMNLK----SLPSTINRLR-SLRMLHLSSCFKLKNA 168 (235)
Q Consensus 101 ~~~l-~~L~~L~l~~~~~~~l~~-~----~~~-l~~L~~L~l~~~~~l~----~l~~~~~~~~-~L~~L~l~~~~~~~~~ 168 (235)
+..+ ++|++|++++|.++..+. . +.. .++|++|++++|.... .++..+...+ +|+.|++++|......
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 3344 789999999998885443 2 333 3689999999864332 3444455665 8999999998433333
Q ss_pred ch----hccCC-CCCceeeccccccccccccCCCCcccccCcC-cccccccchhhhhccchhhHH
Q 026675 169 PE----TLGKV-ESLEYCITSMCILINVVRQKDSDSWKKNVDK-GIKLSTTAISACSLACHWLIQ 227 (235)
Q Consensus 169 ~~----~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~-~~~l~~l~~~~~~~~~~~l~~ 227 (235)
+. .+..+ ++|++|++++|. +.......-...+.. ..+++.++++++.........
T Consensus 184 ~~~l~~~l~~~~~~L~~L~Ls~N~----i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 244 (362)
T 3goz_A 184 CAELAKFLASIPASVTSLDLSANL----LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN 244 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSC----GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHH
T ss_pred HHHHHHHHHhCCCCCCEEECCCCC----CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHH
Confidence 32 34455 589999999998 433111000111222 246888888888665544433
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=4e-12 Score=94.94 Aligned_cols=119 Identities=24% Similarity=0.341 Sum_probs=54.6
Q ss_pred hhhcccCccccchhhhhccCCcEEeecCCcCCccccc-ccccCCccCeeeccccccccccCC-CCCCCCCCceEEecCcc
Q 026675 39 VLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPR-TTSALKYLSTLNLSSLLKFREFPE-KTSGKDQLLEIHLEGTA 116 (235)
Q Consensus 39 ~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~ 116 (235)
+.++++.+..+|..+ .++|+.|++++|. ++.++. .+..+++|++|++++| .++.++. .+..+++|++|++++|.
T Consensus 12 l~~~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 12 IRCNSKGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EECCSSCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCCCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCC
Confidence 344444555555433 2455555555543 333332 2344555555555553 3333332 23445555555555555
Q ss_pred ccCcchh-hhcCCCCcEEeccCCCCccccch-hhhccCCccEEcccCc
Q 026675 117 IRGLPAS-IELLSGNVLLNLKDCMNLKSLPS-TINRLRSLRMLHLSSC 162 (235)
Q Consensus 117 ~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~ 162 (235)
++.++.. +..+++|++|++++| .+..+|. .+..+++|+.|++++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence 5544432 344455555555542 3333332 2344445555555544
No 128
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.38 E-value=1.3e-12 Score=108.13 Aligned_cols=157 Identities=18% Similarity=0.177 Sum_probs=100.9
Q ss_pred cchhhhhhcccCccc-cch-hhhhccCCcEEeecCCcCCcccc-cccccCCccCeeeccc--------------------
Q 026675 34 PDIVQVLWDGIDTRE-LSF-AIELLFRLVQLTLNGCKNLERLP-RTTSALKYLSTLNLSS-------------------- 90 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~-~~~-~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~-------------------- 90 (235)
+.++.++++++.+.+ +|. .|.+++++..+...+++.+..++ ..+..+++|++|++++
T Consensus 54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l 133 (350)
T 4ay9_X 54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133 (350)
T ss_dssp TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE
T ss_pred CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhh
Confidence 445555555555422 332 34445555443333323344432 3344455555555554
Q ss_pred ----cccccccCC-CCCCC-CCCceEEecCccccCcchhhhcCCCCcEEeccCCCCccccch-hhhccCCccEEcccCcc
Q 026675 91 ----LLKFREFPE-KTSGK-DQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLPS-TINRLRSLRMLHLSSCF 163 (235)
Q Consensus 91 ----~~~~~~~p~-~~~~l-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~ 163 (235)
+..+..++. .+..+ ..+++|++++|.++.++..+....+++.+++.+++.++.+|. .|..+++|+.|++++|
T Consensus 134 ~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N- 212 (350)
T 4ay9_X 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT- 212 (350)
T ss_dssp EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-
T ss_pred hhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-
Confidence 333333332 23333 458889999999999988888888999999998899999984 6789999999999998
Q ss_pred CCCccchhccCCCCCceeeccccccccccc
Q 026675 164 KLKNAPETLGKVESLEYCITSMCILINVVR 193 (235)
Q Consensus 164 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 193 (235)
.++.+|.. .+.+|+.|.+.++..++.++
T Consensus 213 ~l~~lp~~--~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 213 RIHSLPSY--GLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp CCCCCCSS--SCTTCCEEECTTCTTCCCCC
T ss_pred CcCccChh--hhccchHhhhccCCCcCcCC
Confidence 68888863 46677777776666544343
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.36 E-value=1.2e-11 Score=92.41 Aligned_cols=126 Identities=23% Similarity=0.328 Sum_probs=101.4
Q ss_pred CCcEEeecCCcCCcccccccccCCccCeeeccccccccccC-CCCCCCCCCceEEecCccccCcchh-hhcCCCCcEEec
Q 026675 58 RLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNL 135 (235)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l 135 (235)
..+.++++++ .++.+|..+ .++|++|++++|. ++.++ ..+..+++|++|++++|.++.++.. +..+++|+.|++
T Consensus 8 ~~~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSK-GLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSS-CCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCC-CCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 3577888884 577777544 4789999999954 55666 4568899999999999999987765 588999999999
Q ss_pred cCCCCccccc-hhhhccCCccEEcccCccCCCccchh-ccCCCCCceeeccccccc
Q 026675 136 KDCMNLKSLP-STINRLRSLRMLHLSSCFKLKNAPET-LGKVESLEYCITSMCILI 189 (235)
Q Consensus 136 ~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~ 189 (235)
++| .+..++ ..+..+++|+.|++++| .++.+|.. +..+++|++|++++|...
T Consensus 84 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 84 HEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCC-CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 985 566666 45788999999999998 56677754 578999999999999843
No 130
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.29 E-value=3.4e-13 Score=115.20 Aligned_cols=129 Identities=16% Similarity=0.111 Sum_probs=62.7
Q ss_pred cchhhhhhcccCcc-----ccchhhhhccCCcEEeecCCcCCcccccc-cccCC----ccCeeecccccccc----ccCC
Q 026675 34 PDIVQVLWDGIDTR-----ELSFAIELLFRLVQLTLNGCKNLERLPRT-TSALK----YLSTLNLSSLLKFR----EFPE 99 (235)
Q Consensus 34 ~~l~~~~l~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~----~L~~L~l~~~~~~~----~~p~ 99 (235)
+.++.++++++.+. .++..+..+++|++|++++|......+.. ...++ +|++|++++|.... .++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 34455555555554 34455566666667666665422111111 11233 46666666654221 3455
Q ss_pred CCCCCCCCceEEecCccccC-cchhh-----hcCCCCcEEeccCCCCcc----ccchhhhccCCccEEcccCc
Q 026675 100 KTSGKDQLLEIHLEGTAIRG-LPASI-----ELLSGNVLLNLKDCMNLK----SLPSTINRLRSLRMLHLSSC 162 (235)
Q Consensus 100 ~~~~l~~L~~L~l~~~~~~~-l~~~~-----~~l~~L~~L~l~~~~~l~----~l~~~~~~~~~L~~L~l~~~ 162 (235)
.+..+++|++|++++|.++. .+..+ ...++|+.|++++|.... .++..+..+++|++|++++|
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 55666666666666665541 11111 123456666665543222 12333444555555555555
No 131
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.21 E-value=5.5e-12 Score=110.95 Aligned_cols=130 Identities=14% Similarity=0.148 Sum_probs=74.7
Q ss_pred ccchhhhhhcccCcccc-chhhh-hccCCcEEeecCCcCCcc--cccccccCCccCeeecccccccc----ccCCCCCCC
Q 026675 33 FPDIVQVLWDGIDTREL-SFAIE-LLFRLVQLTLNGCKNLER--LPRTTSALKYLSTLNLSSLLKFR----EFPEKTSGK 104 (235)
Q Consensus 33 ~~~l~~~~l~~~~~~~~-~~~l~-~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~----~~p~~~~~l 104 (235)
++.++++.++++.+... +..+. .+++|+.|++++|..++. ++.....+++|++|++++|.... .++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 34555556665554322 23343 567777777777654433 33334457777777777764111 133333456
Q ss_pred CCCceEEecCcc--cc--CcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCc
Q 026675 105 DQLLEIHLEGTA--IR--GLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSC 162 (235)
Q Consensus 105 ~~L~~L~l~~~~--~~--~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~ 162 (235)
++|+.|++++|. ++ .++..+..+++|+.|++++|..+..++..+..+++|+.|+++.+
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 777777777775 22 23333445677777777777566666666666677777765433
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.19 E-value=6.3e-11 Score=88.34 Aligned_cols=96 Identities=20% Similarity=0.213 Sum_probs=44.9
Q ss_pred hhhcccCccccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCC-CCCCCCCceEEecCccc
Q 026675 39 VLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEK-TSGKDQLLEIHLEGTAI 117 (235)
Q Consensus 39 ~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~ 117 (235)
++++++.+.++|..+. ++|+.|++++|......|..+..+++|++|++++| .++.+|.. +..+++|++|++++|.+
T Consensus 17 l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 17 VNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCcc
Confidence 4444455555554432 45555555553322222334444555555555552 34444432 34455555555555555
Q ss_pred cCcchh-hhcCCCCcEEeccC
Q 026675 118 RGLPAS-IELLSGNVLLNLKD 137 (235)
Q Consensus 118 ~~l~~~-~~~l~~L~~L~l~~ 137 (235)
+.++.. +..+++|+.|++++
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCS
T ss_pred ceeCHHHhccccCCCEEEeCC
Confidence 544433 44455555555554
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.18 E-value=1.6e-10 Score=86.12 Aligned_cols=99 Identities=19% Similarity=0.266 Sum_probs=68.8
Q ss_pred cEEeecCCcCCcccccccccCCccCeeecccccccccc-CCCCCCCCCCceEEecCccccCcchh-hhcCCCCcEEeccC
Q 026675 60 VQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREF-PEKTSGKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKD 137 (235)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~ 137 (235)
+.++++++ .++.+|..+ .++|++|++++|. ++.+ |..+..+++|++|++++|.++.+|.. +..+++|+.|++++
T Consensus 15 ~~l~~~~n-~l~~iP~~~--~~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGI--PTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSS-CCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCC-CCCccCCCc--CCCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56777774 467777655 3678888888844 4444 55677788888888888887777665 36777788888877
Q ss_pred CCCccccch-hhhccCCccEEcccCcc
Q 026675 138 CMNLKSLPS-TINRLRSLRMLHLSSCF 163 (235)
Q Consensus 138 ~~~l~~l~~-~~~~~~~L~~L~l~~~~ 163 (235)
+.+..+|. .+..+++|+.|++++|+
T Consensus 91 -N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 -NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp -SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred -CccceeCHHHhccccCCCEEEeCCCC
Confidence 45556654 36777777777777763
No 134
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.17 E-value=1.6e-12 Score=114.36 Aligned_cols=134 Identities=19% Similarity=0.170 Sum_probs=96.5
Q ss_pred hhhccCCcEEeecCCcCCcccccccc-cCCccCeeeccccccccc--cCCCCCCCCCCceEEecCccccC-----cchhh
Q 026675 53 IELLFRLVQLTLNGCKNLERLPRTTS-ALKYLSTLNLSSLLKFRE--FPEKTSGKDQLLEIHLEGTAIRG-----LPASI 124 (235)
Q Consensus 53 l~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~-----l~~~~ 124 (235)
...+++|+.|++++|......+..+. .+++|++|++++|..++. ++.....+++|++|++++|.++. ++...
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 34688999999999764333333443 588999999999865554 55555578999999999998663 33334
Q ss_pred hcCCCCcEEeccCCC-Cc--cccchhhhccCCccEEcccCccCCCccchhccCCCCCceeecccc
Q 026675 125 ELLSGNVLLNLKDCM-NL--KSLPSTINRLRSLRMLHLSSCFKLKNAPETLGKVESLEYCITSMC 186 (235)
Q Consensus 125 ~~l~~L~~L~l~~~~-~l--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 186 (235)
..+++|+.|++++|. .+ ..++..+..+++|+.|++++|..++.++..+..+++|+.|+++.+
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 467799999999875 12 223333456899999999998666667777778888888876655
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.16 E-value=9.6e-11 Score=86.98 Aligned_cols=95 Identities=19% Similarity=0.252 Sum_probs=44.0
Q ss_pred hhhcccCccccchhhhhccCCcEEeecCCcCCccc-ccccccCCccCeeeccccccccccCC-CCCCCCCCceEEecCcc
Q 026675 39 VLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERL-PRTTSALKYLSTLNLSSLLKFREFPE-KTSGKDQLLEIHLEGTA 116 (235)
Q Consensus 39 ~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~ 116 (235)
++++++.+.++|..+ .++|+.|++++|. ++.+ |..+..+++|++|++++| .++.+|. .+..+++|++|++++|.
T Consensus 14 l~~s~n~l~~ip~~~--~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 14 VDCSGKSLASVPTGI--PTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EECTTSCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCccCccC--CCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCc
Confidence 444455555555433 2455555555533 2222 333444555555555552 3333332 23445555555555555
Q ss_pred ccCcchh-hhcCCCCcEEeccC
Q 026675 117 IRGLPAS-IELLSGNVLLNLKD 137 (235)
Q Consensus 117 ~~~l~~~-~~~l~~L~~L~l~~ 137 (235)
++.++.. +..+++|+.|++++
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCS
T ss_pred cCEeCHHHhcCCCCCCEEEeCC
Confidence 5544432 44445555555554
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.15 E-value=2.8e-10 Score=84.48 Aligned_cols=100 Identities=24% Similarity=0.317 Sum_probs=65.2
Q ss_pred CcEEeecCCcCCcccccccccCCccCeeecccccccccc-CCCCCCCCCCceEEecCccccCcchh-hhcCCCCcEEecc
Q 026675 59 LVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREF-PEKTSGKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLK 136 (235)
Q Consensus 59 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~ 136 (235)
.+.++++++ .++.+|..+ .++|++|++++| .++.+ |..+..+++|++|++++|.++.++.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTS-CCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCC-CcCccCccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 466777773 466666554 367777777774 44444 45567777777777777777766654 3567777777777
Q ss_pred CCCCccccch-hhhccCCccEEcccCcc
Q 026675 137 DCMNLKSLPS-TINRLRSLRMLHLSSCF 163 (235)
Q Consensus 137 ~~~~l~~l~~-~~~~~~~L~~L~l~~~~ 163 (235)
+| .+..++. .+..+++|+.|++++|+
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DN-QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 63 5555553 46667777777777763
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.12 E-value=4.4e-11 Score=105.21 Aligned_cols=34 Identities=9% Similarity=0.022 Sum_probs=16.4
Q ss_pred cchhhhhhcccCcc-----ccchhhhhccCCcEEeecCC
Q 026675 34 PDIVQVLWDGIDTR-----ELSFAIELLFRLVQLTLNGC 67 (235)
Q Consensus 34 ~~l~~~~l~~~~~~-----~~~~~l~~l~~L~~L~l~~~ 67 (235)
+.++.+++.++.+. .++..+.++++|+.|++++|
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 44444455444443 23333445556666665554
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.11 E-value=1.6e-11 Score=108.02 Aligned_cols=155 Identities=12% Similarity=0.064 Sum_probs=91.2
Q ss_pred cccchhhhhhcccCcccc-chhhhh-ccC-CcEEeecCCcCCc--ccccccccCCccCeeeccccccccc----cCCCCC
Q 026675 32 KFPDIVQVLWDGIDTREL-SFAIEL-LFR-LVQLTLNGCKNLE--RLPRTTSALKYLSTLNLSSLLKFRE----FPEKTS 102 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~-~~~l~~-l~~-L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~----~p~~~~ 102 (235)
.++.+++++++++.+... +..+.. ++. |++|++++|.... .++.....+++|++|++++|..... ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 456677777777765432 334544 344 8888888876332 1222234578888888888643211 222233
Q ss_pred CCCCCceEEecCcccc-----CcchhhhcCCCCcEEeccCCCCccccchhhhccCCccEEcccCcc--------------
Q 026675 103 GKDQLLEIHLEGTAIR-----GLPASIELLSGNVLLNLKDCMNLKSLPSTINRLRSLRMLHLSSCF-------------- 163 (235)
Q Consensus 103 ~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~-------------- 163 (235)
.+++|+.|+++++.++ .++..+..+++|+.|++++| .+..++..+..+++|+.|+++.+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 5677777777777665 23444556777777777774 444455556666666666665321
Q ss_pred ------------CCCccchhccCCCCCceeeccccc
Q 026675 164 ------------KLKNAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 164 ------------~~~~~~~~~~~l~~L~~L~l~~~~ 187 (235)
....+|..+..+++|++|++++|.
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 122344445566677777777766
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=2.3e-09 Score=87.73 Aligned_cols=80 Identities=14% Similarity=0.186 Sum_probs=34.3
Q ss_pred CCCCceEEecCccccCcchh-hhcCCCCcEEeccCCCCccccc-hhhhccCCcc-EEcccCccCCCccc-hhccCCCCCc
Q 026675 104 KDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDCMNLKSLP-STINRLRSLR-MLHLSSCFKLKNAP-ETLGKVESLE 179 (235)
Q Consensus 104 l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~-~L~l~~~~~~~~~~-~~~~~l~~L~ 179 (235)
+++|+.+++++|.++.++.. +..+++|+.+++.++ +..++ .+|..+++|+ .+++.+ .++.++ .+|..|++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 34444444444444443332 334444444444432 33333 2344444444 444443 233333 2344444444
Q ss_pred eeeccccc
Q 026675 180 YCITSMCI 187 (235)
Q Consensus 180 ~L~l~~~~ 187 (235)
.++++.+.
T Consensus 301 ~l~l~~n~ 308 (329)
T 3sb4_A 301 YVLATGDK 308 (329)
T ss_dssp EEEECSSC
T ss_pred EEEeCCCc
Confidence 44444443
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.95 E-value=1.5e-09 Score=89.33 Aligned_cols=99 Identities=16% Similarity=0.063 Sum_probs=80.5
Q ss_pred hhhccc-CccccchhhhhccCCcEEeecCCcCCcccc-cccccCCccCeeeccccccccccC-CCCCCCCCCceEEecCc
Q 026675 39 VLWDGI-DTRELSFAIELLFRLVQLTLNGCKNLERLP-RTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIHLEGT 115 (235)
Q Consensus 39 ~~l~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~ 115 (235)
+.+++. .+..+|. +..+++|+.|+|++++.+..++ ..|..+++|++|+|++| .++.++ ..+..+++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 466776 7888998 9999999999999745566666 56888999999999996 455555 57789999999999999
Q ss_pred cccCcchhhhcCCCCcEEeccCCC
Q 026675 116 AIRGLPASIELLSGNVLLNLKDCM 139 (235)
Q Consensus 116 ~~~~l~~~~~~l~~L~~L~l~~~~ 139 (235)
.++.+|..+.....|+.|++.+|+
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 999888766555459999999854
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=4.1e-09 Score=86.72 Aligned_cols=101 Identities=19% Similarity=0.158 Sum_probs=76.1
Q ss_pred EEeecCCcCCcccccccccCCccCeeeccccccccccC-CCCCCCCCCceEEecCccccCcch-hhhcCCCCcEEeccCC
Q 026675 61 QLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDC 138 (235)
Q Consensus 61 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~ 138 (235)
.++.++++.++.+|. +..+.+|++|+|++++.++.++ ..+..+++|++|+|++|.++.++. .+..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~- 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF- 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-
Confidence 457777546788888 8888889999998645666666 568889999999999998886654 567889999999988
Q ss_pred CCccccchhhhccCCccEEcccCcc
Q 026675 139 MNLKSLPSTINRLRSLRMLHLSSCF 163 (235)
Q Consensus 139 ~~l~~l~~~~~~~~~L~~L~l~~~~ 163 (235)
+.+..+|..+.....|+.|++.+|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CccceeCHHHcccCCceEEEeeCCC
Confidence 5666776543333338889888874
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.87 E-value=3.5e-10 Score=94.31 Aligned_cols=129 Identities=16% Similarity=0.100 Sum_probs=69.6
Q ss_pred cCCcEEeecCCcCCcc-cccccccCCccCeeeccccccccc----cCCCC-CCCCCCceEEecCccccC-----cchhhh
Q 026675 57 FRLVQLTLNGCKNLER-LPRTTSALKYLSTLNLSSLLKFRE----FPEKT-SGKDQLLEIHLEGTAIRG-----LPASIE 125 (235)
Q Consensus 57 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~----~p~~~-~~l~~L~~L~l~~~~~~~-----l~~~~~ 125 (235)
++|+.|++++|..... +......+++|+.|++++|..... +...+ ...++|++|++++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 5666777766542211 111122345667777777532211 11111 234567777777776652 444455
Q ss_pred cCCCCcEEeccCCCCccc-----cchhhhccCCccEEcccCccCCC-----ccchhccCCCCCceeeccccc
Q 026675 126 LLSGNVLLNLKDCMNLKS-----LPSTINRLRSLRMLHLSSCFKLK-----NAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 126 ~l~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~ 187 (235)
..++|++|++++|. +.. ++..+...++|+.|++++|. ++ .+...+...++|++|++++|.
T Consensus 181 ~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 181 GNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp TCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred cCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 66677777777643 322 23445556677777777763 33 233344455667777777776
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=6.4e-09 Score=85.09 Aligned_cols=125 Identities=15% Similarity=0.169 Sum_probs=83.5
Q ss_pred ccCCcEEeecCCcCCccccc-ccccCCccCeeeccccccccccCCCCCCCCCCceEEecCccc-------c---------
Q 026675 56 LFRLVQLTLNGCKNLERLPR-TTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAI-------R--------- 118 (235)
Q Consensus 56 l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~-------~--------- 118 (235)
+++|+.+++.. .++.++. .|.++++|+.+++..+....--+.++..+.++..+....... .
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 88888888887 3555554 577888899999888543322334555566565555443110 0
Q ss_pred -----------Ccch---------------------------hh-hcCCCCcEEeccCCCCccccc-hhhhccCCccEEc
Q 026675 119 -----------GLPA---------------------------SI-ELLSGNVLLNLKDCMNLKSLP-STINRLRSLRMLH 158 (235)
Q Consensus 119 -----------~l~~---------------------------~~-~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~ 158 (235)
.++. .+ ..+++|+.+++.+| .+..++ .+|..+++|+.++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEE
Confidence 0000 00 13788999999874 577776 5688899999999
Q ss_pred ccCccCCCccch-hccCCCCCc-eeeccc
Q 026675 159 LSSCFKLKNAPE-TLGKVESLE-YCITSM 185 (235)
Q Consensus 159 l~~~~~~~~~~~-~~~~l~~L~-~L~l~~ 185 (235)
+.++ ++.++. +|..+++|+ .+++..
T Consensus 257 l~~n--i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 257 LPHN--LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp CCTT--CCEECTTTTTTCTTCCEEEEECT
T ss_pred CCcc--cceehHHHhhCChhccEEEEEcc
Confidence 9886 677764 678899999 998877
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.81 E-value=2.1e-10 Score=95.64 Aligned_cols=169 Identities=14% Similarity=0.014 Sum_probs=110.7
Q ss_pred ccCCcEEeecCCcCCccc----ccccc-cCCccCeeeccccccccc-cCCCCCCCCCCceEEecCccccC-----cchhh
Q 026675 56 LFRLVQLTLNGCKNLERL----PRTTS-ALKYLSTLNLSSLLKFRE-FPEKTSGKDQLLEIHLEGTAIRG-----LPASI 124 (235)
Q Consensus 56 l~~L~~L~l~~~~~~~~~----~~~~~-~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~-----l~~~~ 124 (235)
++.|+.|++++|...... ...+. ..++|++|++++|..... .......+++|+.|++++|.++. +...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 578999999997633221 22222 236899999999754322 22222235689999999998873 22233
Q ss_pred -hcCCCCcEEeccCCCCccc-----cchhhhccCCccEEcccCccCCCc-----cchhccCCCCCceeeccccccccccc
Q 026675 125 -ELLSGNVLLNLKDCMNLKS-----LPSTINRLRSLRMLHLSSCFKLKN-----APETLGKVESLEYCITSMCILINVVR 193 (235)
Q Consensus 125 -~~l~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~ 193 (235)
...++|+.|++++|. +.. ++..+...++|++|++++|. ++. ++..+...++|++|++++|. ++
T Consensus 151 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~----i~ 224 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG----AG 224 (372)
T ss_dssp HSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC----CC
T ss_pred HhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC----CC
Confidence 246889999999974 432 45556788999999999995 442 45567778899999999998 43
Q ss_pred cCCCCcccccCcCcccccccchhhhhccchhhHHhhh
Q 026675 194 QKDSDSWKKNVDKGIKLSTTAISACSLACHWLIQTSR 230 (235)
Q Consensus 194 ~~~~~~~l~~L~~~~~l~~l~~~~~~~~~~~l~~l~~ 230 (235)
......-...+..++.|++++++++.........+..
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 2211111122334556788888887766555555543
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=4.4e-09 Score=87.27 Aligned_cols=173 Identities=13% Similarity=0.100 Sum_probs=95.3
Q ss_pred hhhhhccCCcEEeecCCcC----C-----cccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCcccc-Cc
Q 026675 51 FAIELLFRLVQLTLNGCKN----L-----ERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIR-GL 120 (235)
Q Consensus 51 ~~l~~l~~L~~L~l~~~~~----~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~l 120 (235)
.++..+++|+.|.+..... + ..+...+..+++|+.|++++|... .++. +. +++|+.|++..+.+. ..
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHH
Confidence 3455678888888755321 0 123333456788888888886333 2443 33 778888888877765 21
Q ss_pred chhhh--cCCCCcEEeccCCC-------Cccccchhh--hccCCccEEcccCccCCCccchhc---cCCCCCceeecccc
Q 026675 121 PASIE--LLSGNVLLNLKDCM-------NLKSLPSTI--NRLRSLRMLHLSSCFKLKNAPETL---GKVESLEYCITSMC 186 (235)
Q Consensus 121 ~~~~~--~l~~L~~L~l~~~~-------~l~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~ 186 (235)
...+. .+++|+.|+|+.+. .+..+...+ ..+++|+.|++++|......+..+ ..+++|++|+++.|
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 22232 67888888875321 122222222 347888888888875433222222 24678888888877
Q ss_pred ccccccccCCCCcccccCcCcccccccchhhhhccchhhHHhhh
Q 026675 187 ILINVVRQKDSDSWKKNVDKGIKLSTTAISACSLACHWLIQTSR 230 (235)
Q Consensus 187 ~~~~~~~~~~~~~~l~~L~~~~~l~~l~~~~~~~~~~~l~~l~~ 230 (235)
. +.....-.-...+..++.|+.++++.|...-..+..+..
T Consensus 290 ~----L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 290 V----LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp C----CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred C----CChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 6 222110000111223445667777666555444544444
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.69 E-value=1.1e-08 Score=84.93 Aligned_cols=152 Identities=18% Similarity=0.213 Sum_probs=98.8
Q ss_pred cccchhhhhhcccCc----------cccchhhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCC
Q 026675 32 KFPDIVQVLWDGIDT----------RELSFAIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKT 101 (235)
Q Consensus 32 ~~~~l~~~~l~~~~~----------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~ 101 (235)
++++++.+.+.+... ..+...+..+++|+.|++++|... .++. +. +++|+.|++..|.........+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHH
Confidence 345666666654322 124556678899999999987433 3443 33 8899999998865332222222
Q ss_pred --CCCCCCceEEecCc--c------ccCcchhh--hcCCCCcEEeccCCCCccccchhhh---ccCCccEEcccCccCCC
Q 026675 102 --SGKDQLLEIHLEGT--A------IRGLPASI--ELLSGNVLLNLKDCMNLKSLPSTIN---RLRSLRMLHLSSCFKLK 166 (235)
Q Consensus 102 --~~l~~L~~L~l~~~--~------~~~l~~~~--~~l~~L~~L~l~~~~~l~~l~~~~~---~~~~L~~L~l~~~~~~~ 166 (235)
..+++|+.|+++.+ . +..+...+ ..+++|+.|++.+|......+..+. .+++|+.|+++.|. ++
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~ 292 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LT 292 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CB
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CC
Confidence 26899999998532 1 22222222 3578999999988765443333333 57899999999874 44
Q ss_pred c-----cchhccCCCCCceeeccccc
Q 026675 167 N-----APETLGKVESLEYCITSMCI 187 (235)
Q Consensus 167 ~-----~~~~~~~l~~L~~L~l~~~~ 187 (235)
. ++..+..+++|+.|+++.|.
T Consensus 293 d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 293 DEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred hHHHHHHHhhcccCCcceEEECCCCc
Confidence 3 34444567899999999987
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.55 E-value=1e-07 Score=70.61 Aligned_cols=83 Identities=16% Similarity=0.144 Sum_probs=38.7
Q ss_pred CCceEEecCccccC-cchhhhcCCCCcEEeccCCCCccccc-hhhhc----cCCccEEcccCccCCCccc-hhccCCCCC
Q 026675 106 QLLEIHLEGTAIRG-LPASIELLSGNVLLNLKDCMNLKSLP-STINR----LRSLRMLHLSSCFKLKNAP-ETLGKVESL 178 (235)
Q Consensus 106 ~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~----~~~L~~L~l~~~~~~~~~~-~~~~~l~~L 178 (235)
+|+.||+++|.++. --..+..+++|+.|++++|..+++-. ..+.. +++|++|++++|..+++-. ..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555441 11223455555555555555544321 11222 2345555555555444311 223445555
Q ss_pred ceeecccccc
Q 026675 179 EYCITSMCIL 188 (235)
Q Consensus 179 ~~L~l~~~~~ 188 (235)
++|++++|..
T Consensus 142 ~~L~L~~c~~ 151 (176)
T 3e4g_A 142 KYLFLSDLPG 151 (176)
T ss_dssp CEEEEESCTT
T ss_pred CEEECCCCCC
Confidence 5555555553
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.37 E-value=3.9e-07 Score=67.50 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=19.3
Q ss_pred CCcEEeccCCCCccccc-hhhhccCCccEEcccCccCCCc
Q 026675 129 GNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLKN 167 (235)
Q Consensus 129 ~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~ 167 (235)
+|+.|++++|..+++-- ..+.++++|+.|++++|+.++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 45555555555444321 2234455555555555555443
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.27 E-value=5.9e-06 Score=69.39 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=28.0
Q ss_pred hhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccC-CCCCCCCCCceEEecC
Q 026675 52 AIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIHLEG 114 (235)
Q Consensus 52 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~ 114 (235)
.|.+|++|+.+++..+ .++.++...-...+|+.+.+.. + ++.++ .++..+++|+.+++..
T Consensus 175 aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~-~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPV-T-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCT-T-CCEECTTTTTTCTTCCCEECCT
T ss_pred HhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCC-c-hheehhhHhhCCCCCCEEecCC
Confidence 4556666666666653 2344433211134455554443 1 33333 3444555555555544
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.23 E-value=5.9e-07 Score=67.30 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=39.9
Q ss_pred hhhhccCCcEEeecCCcCCcc-----cccccccCCccCeeecccccccc----ccCCCCCCCCCCceEEecCccccC---
Q 026675 52 AIELLFRLVQLTLNGCKNLER-----LPRTTSALKYLSTLNLSSLLKFR----EFPEKTSGKDQLLEIHLEGTAIRG--- 119 (235)
Q Consensus 52 ~l~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~~--- 119 (235)
.+...+.|+.|++++|..++. +...+...++|++|++++|.... .+...+...++|++|++++|.+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 445567777777777522321 22233344556666666643221 122223334455555555555441
Q ss_pred --cchhhhcCCCCcEEec
Q 026675 120 --LPASIELLSGNVLLNL 135 (235)
Q Consensus 120 --l~~~~~~l~~L~~L~l 135 (235)
+...+...++|++|++
T Consensus 111 ~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 111 LALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHhCCCceEEEe
Confidence 2333444444555555
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.22 E-value=1.1e-06 Score=65.77 Aligned_cols=111 Identities=18% Similarity=0.149 Sum_probs=77.6
Q ss_pred cccccCCccCeeecccccccc-----ccCCCCCCCCCCceEEecCcccc-----CcchhhhcCCCCcEEeccCCCCccc-
Q 026675 75 RTTSALKYLSTLNLSSLLKFR-----EFPEKTSGKDQLLEIHLEGTAIR-----GLPASIELLSGNVLLNLKDCMNLKS- 143 (235)
Q Consensus 75 ~~~~~l~~L~~L~l~~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~l~~- 143 (235)
..+...+.|++|++++|..+. .+...+...++|++|++++|.+. .+...+...++|++|++++| .+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHH
Confidence 345567889999999862332 24455666788999999999876 24555667788999999885 4432
Q ss_pred ----cchhhhccCCccEEcc--cCccCCCc-----cchhccCCCCCceeeccccc
Q 026675 144 ----LPSTINRLRSLRMLHL--SSCFKLKN-----APETLGKVESLEYCITSMCI 187 (235)
Q Consensus 144 ----l~~~~~~~~~L~~L~l--~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~ 187 (235)
+...+...++|++|++ ++|. ++. +.+.+...+.|++|++++|.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4555677788999998 6663 332 44556667788888888887
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.13 E-value=2e-05 Score=66.17 Aligned_cols=147 Identities=9% Similarity=0.084 Sum_probs=81.0
Q ss_pred cchhhhhhcccCccccchhhhhccCCcEEeecCCcCCcccc-cccccCCccCeeecccc--------------------c
Q 026675 34 PDIVQVLWDGIDTRELSFAIELLFRLVQLTLNGCKNLERLP-RTTSALKYLSTLNLSSL--------------------L 92 (235)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~--------------------~ 92 (235)
+.++.+.+.++.+..++.....+.+|+.+.+..+ ++.++ ..|..+.+|+.+.+..+ .
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~ 257 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPN 257 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEET
T ss_pred ccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCC
Confidence 4455566666666666664444667777777642 44443 24555666666666542 1
Q ss_pred cccccC-CCCCCCCCCceEEecCcccc-----Cc-chhhhcCCCCcEEeccCCCCccccc-hhhhccCCccEEcccCccC
Q 026675 93 KFREFP-EKTSGKDQLLEIHLEGTAIR-----GL-PASIELLSGNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFK 164 (235)
Q Consensus 93 ~~~~~p-~~~~~l~~L~~L~l~~~~~~-----~l-~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~ 164 (235)
.++.++ .++..|++|+.+.+.++.+. .+ +..+..+++|+.+.+.. .+..++ .+|..+++|+.+++..+
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~-- 333 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN-- 333 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--
Confidence 122222 34555666666666655443 22 22345566666666653 355554 45666666777766543
Q ss_pred CCccc-hhccCCCCCceeeccccc
Q 026675 165 LKNAP-ETLGKVESLEYCITSMCI 187 (235)
Q Consensus 165 ~~~~~-~~~~~l~~L~~L~l~~~~ 187 (235)
++.++ .+|..+ +|+.+.+.++.
T Consensus 334 l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 334 VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CCEECTTSSSSS-CCCEEEECCSS
T ss_pred ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 44444 345566 67777776665
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.97 E-value=8.7e-06 Score=64.43 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=53.1
Q ss_pred CCCCCceEEecCccccCcc---hhhhcCCCCcEEeccCCCCccccchhhhccC--CccEEcccCccCCCccc-------h
Q 026675 103 GKDQLLEIHLEGTAIRGLP---ASIELLSGNVLLNLKDCMNLKSLPSTINRLR--SLRMLHLSSCFKLKNAP-------E 170 (235)
Q Consensus 103 ~l~~L~~L~l~~~~~~~l~---~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~--~L~~L~l~~~~~~~~~~-------~ 170 (235)
.+++|+.|++++|.++.++ ..+..+++|+.|++++ +.+..+.. +..+. +|++|++++|+....+| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchh-hhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 5678888888888877543 4566788888888887 45555532 34444 78888888886544333 2
Q ss_pred hccCCCCCceee
Q 026675 171 TLGKVESLEYCI 182 (235)
Q Consensus 171 ~~~~l~~L~~L~ 182 (235)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356778888775
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.79 E-value=3.9e-05 Score=60.71 Aligned_cols=85 Identities=24% Similarity=0.248 Sum_probs=55.2
Q ss_pred CCCCCCce--EEecCccccCcch----hhhcCCCCcEEeccCCCCccc---cchhhhccCCccEEcccCccCCCccchhc
Q 026675 102 SGKDQLLE--IHLEGTAIRGLPA----SIELLSGNVLLNLKDCMNLKS---LPSTINRLRSLRMLHLSSCFKLKNAPETL 172 (235)
Q Consensus 102 ~~l~~L~~--L~l~~~~~~~l~~----~~~~l~~L~~L~l~~~~~l~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 172 (235)
...+.|.. ++++.|....++. ....+++|+.|++++| .+.. +|..+..+++|+.|++++| .++.+. .+
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l 214 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-EL 214 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hh
Confidence 33444444 4555564333332 2256889999999985 5544 4456778999999999998 455542 23
Q ss_pred cCCC--CCceeeccccccc
Q 026675 173 GKVE--SLEYCITSMCILI 189 (235)
Q Consensus 173 ~~l~--~L~~L~l~~~~~~ 189 (235)
..+. +|+.|++++|...
T Consensus 215 ~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp GGGTTSCCSEEECTTSTTG
T ss_pred hhcccCCcceEEccCCcCc
Confidence 3344 8999999999843
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.27 E-value=0.0016 Score=54.26 Aligned_cols=106 Identities=11% Similarity=0.139 Sum_probs=72.6
Q ss_pred ccccCCccCeeeccccccccccCCCCCCCCCCceEEecCccccCcch-hhhcCCCCcEEeccCCCCccccc-hhhhccCC
Q 026675 76 TTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDCMNLKSLP-STINRLRS 153 (235)
Q Consensus 76 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~ 153 (235)
.|..+..|+.+.+.. ....--..++..+.+|+.+.+.. .++.++. .+..+.+|+.+.+.. .++.+. .+|.+|.+
T Consensus 260 aF~~c~~L~~i~lp~-~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPD-SVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCT-TCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred eeeecccccEEeccc-ccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCC
Confidence 456677788887765 22222234667788888888853 3454444 355778888888874 466664 56788888
Q ss_pred ccEEcccCccCCCccc-hhccCCCCCceeeccccc
Q 026675 154 LRMLHLSSCFKLKNAP-ETLGKVESLEYCITSMCI 187 (235)
Q Consensus 154 L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 187 (235)
|+.+.+..+ ++.+. .+|.+|++|+.+++.++.
T Consensus 336 L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPSS--VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCEEEECcc--cCEEhHhHhhCCCCCCEEEECCce
Confidence 998888653 66665 467788889988887765
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.12 E-value=0.0065 Score=50.45 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=40.7
Q ss_pred hhcCCCCcEEeccCCCCccccc-hhhhccCCccEEcccCccCCCccc-hhccCCCCCceeecccc
Q 026675 124 IELLSGNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLKNAP-ETLGKVESLEYCITSMC 186 (235)
Q Consensus 124 ~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~ 186 (235)
+..+.+|+.+.+.. .+..++ .+|.++.+|+.+++..+ ++.++ .+|.+|++|+.+.+..+
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc
Confidence 44667777777764 355554 45778888888888653 66665 45777888888887654
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.11 E-value=0.0018 Score=53.85 Aligned_cols=127 Identities=12% Similarity=0.062 Sum_probs=90.7
Q ss_pred hhhhccCCcEEeecCCcCCcccccccccCCccCeeeccccccccccCCCCCCCCCCceEEecCccccCcch-hhhcCCCC
Q 026675 52 AIELLFRLVQLTLNGCKNLERLPRTTSALKYLSTLNLSSLLKFREFPEKTSGKDQLLEIHLEGTAIRGLPA-SIELLSGN 130 (235)
Q Consensus 52 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L 130 (235)
.+.++..++.+.+..+ ...--...+..+..++.+..... .+ -...+..+.+|+.+.+..+ ++.+.. .+..+.+|
T Consensus 248 ~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~-~i--~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 248 VFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSV-IV--PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL 322 (394)
T ss_dssp TTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSS-EE--CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccceeEEcCCC-cceeeccccccccccceeccCce-ee--ccccccccccccccccccc-cceechhhhcCCCCC
Confidence 5667888999888773 22222345666778888776652 11 1245667899999998765 554443 46688999
Q ss_pred cEEeccCCCCccccc-hhhhccCCccEEcccCccCCCccc-hhccCCCCCceeeccccc
Q 026675 131 VLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLKNAP-ETLGKVESLEYCITSMCI 187 (235)
Q Consensus 131 ~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 187 (235)
+.+.+.. .++.+. .+|.+|.+|+.+++..+ ++.++ .+|..|.+|+.+++..+-
T Consensus 323 ~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~~ 377 (394)
T 4fs7_A 323 VSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKRL 377 (394)
T ss_dssp CEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGGG
T ss_pred CEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCCC
Confidence 9999974 476675 57889999999999764 66666 468889999999887653
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.01 E-value=0.0065 Score=50.08 Aligned_cols=103 Identities=11% Similarity=0.087 Sum_probs=54.2
Q ss_pred cccCCccCeeeccccccccccC-CCCCCCCCCceEEecCccccCcch-hhhcCCCCcEEeccCCCCccccc-hhhhccCC
Q 026675 77 TSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDCMNLKSLP-STINRLRS 153 (235)
Q Consensus 77 ~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~ 153 (235)
+..+..|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ +..++. .+..+.+|+.+.+.+ ..++.++ .+|.++.+
T Consensus 236 f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 236 FYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTT
T ss_pred ccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceeccccccccccccccccccc-cccceehhhhhcCCCC
Confidence 334455555555431 22232 34445666666666443 333322 345566676666654 3454444 45666677
Q ss_pred ccEEcccCccCCCccc-hhccCCCCCceeeccc
Q 026675 154 LRMLHLSSCFKLKNAP-ETLGKVESLEYCITSM 185 (235)
Q Consensus 154 L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~ 185 (235)
|+.+.+..+ ++.+. .+|.+|++|+.+.+..
T Consensus 312 L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 312 LSSVTLPTA--LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEECCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred CCEEEcCcc--ccEEHHHHhhCCCCCCEEEECC
Confidence 777776542 45554 3455666666666543
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.94 E-value=0.0069 Score=50.31 Aligned_cols=84 Identities=11% Similarity=0.114 Sum_probs=63.6
Q ss_pred CCCCCCCCCceEEecCccccCcchhhhcCCCCcEEeccCCCCccccc-hhhhccCCccEEcccCccCCCccc-hhccCCC
Q 026675 99 EKTSGKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLKNAP-ETLGKVE 176 (235)
Q Consensus 99 ~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~ 176 (235)
.++..+.+|+.+.+..+....-...+..+.+|+.+.+. ..+..++ .+|..+.+|+.+++..+ ++.+. .+|..|.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred ceeeecccccEEecccccceecCcccccccccccccCC--CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence 46778899999988776444334456788899999886 4666666 56888999999999764 66665 4678899
Q ss_pred CCceeecccc
Q 026675 177 SLEYCITSMC 186 (235)
Q Consensus 177 ~L~~L~l~~~ 186 (235)
+|+.+.+..+
T Consensus 335 ~L~~i~ip~s 344 (394)
T 4gt6_A 335 QLERIAIPSS 344 (394)
T ss_dssp TCCEEEECTT
T ss_pred CCCEEEECcc
Confidence 9999988654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.78 E-value=0.0092 Score=49.14 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=84.8
Q ss_pred hhhhccCCcEEeecCCcCCcccc-cccccCCccCeeeccccccccccC-CCCCCCCCCceEEecCccccCcch-hhhcCC
Q 026675 52 AIELLFRLVQLTLNGCKNLERLP-RTTSALKYLSTLNLSSLLKFREFP-EKTSGKDQLLEIHLEGTAIRGLPA-SIELLS 128 (235)
Q Consensus 52 ~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~ 128 (235)
.+.++..|+.+.+..+ ++.+. ..+..+.+|+.+.+.. .++.++ ..+..|.+|+.+.+..+.++.++. .+..+.
T Consensus 235 ~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred cccCCccceEEEcCCC--ccEeCccccceeehhccccccc--cceeccccccccccccccccccccccceehhhhhcCCC
Confidence 4567788888887663 44443 3466788899998865 255555 467889999999999888886654 466889
Q ss_pred CCcEEeccCCCCccccc-hhhhccCCccEEcccCccCCCccch-hccCCC
Q 026675 129 GNVLLNLKDCMNLKSLP-STINRLRSLRMLHLSSCFKLKNAPE-TLGKVE 176 (235)
Q Consensus 129 ~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~ 176 (235)
+|+.+.+.. .++.+. .+|.+|.+|+.+.+..+ ++.+.. +|.++.
T Consensus 311 ~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~--v~~I~~~aF~~c~ 356 (379)
T 4h09_A 311 KLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS--ITLIESGAFEGSS 356 (379)
T ss_dssp TCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTSS
T ss_pred CCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc--cCEEchhHhhCCC
Confidence 999999974 477775 57889999999988653 555553 444443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.52 E-value=0.0021 Score=48.23 Aligned_cols=84 Identities=15% Similarity=0.127 Sum_probs=41.5
Q ss_pred hhccCCcEEeecCCcCCcc-----cccccccCCccCeeeccccccccc----cCCCCCCCCCCceEEecCcccc-----C
Q 026675 54 ELLFRLVQLTLNGCKNLER-----LPRTTSALKYLSTLNLSSLLKFRE----FPEKTSGKDQLLEIHLEGTAIR-----G 119 (235)
Q Consensus 54 ~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~-----~ 119 (235)
.+-+.|+.|++++++.+.. +...+..-..|+.|+|++|..-.. +.+.+..-..|+.|++++|.+. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 3456677777776433321 222333345566666666443221 2222333455666666666555 1
Q ss_pred cchhhhcCCCCcEEeccC
Q 026675 120 LPASIELLSGNVLLNLKD 137 (235)
Q Consensus 120 l~~~~~~l~~L~~L~l~~ 137 (235)
+.+.+..-+.|+.|++++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 333344444556665554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.41 E-value=0.003 Score=47.41 Aligned_cols=110 Identities=19% Similarity=0.158 Sum_probs=77.6
Q ss_pred cccCCccCeeecccccccc-----ccCCCCCCCCCCceEEecCcccc-----CcchhhhcCCCCcEEeccCCCCccc---
Q 026675 77 TSALKYLSTLNLSSLLKFR-----EFPEKTSGKDQLLEIHLEGTAIR-----GLPASIELLSGNVLLNLKDCMNLKS--- 143 (235)
Q Consensus 77 ~~~l~~L~~L~l~~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~l~~--- 143 (235)
+..-+.|+.|++++++.+. .+.+.+..-.+|+.|++++|.+. .+.+.+..-+.|+.|+|+.| .+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence 3445679999998853443 24455666788999999999887 35666777889999999984 4432
Q ss_pred --cchhhhccCCccEEcccCccC--CC-----ccchhccCCCCCceeeccccc
Q 026675 144 --LPSTINRLRSLRMLHLSSCFK--LK-----NAPETLGKVESLEYCITSMCI 187 (235)
Q Consensus 144 --l~~~~~~~~~L~~L~l~~~~~--~~-----~~~~~~~~l~~L~~L~l~~~~ 187 (235)
+...+..-+.|+.|++++|.. +. .+.+.+..-+.|+.|+++.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 344455666799999987532 22 244556667889999987665
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.43 E-value=0.034 Score=38.60 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=15.8
Q ss_pred CCceEEecCccccCcchh-hhcCCCCcEEeccCC
Q 026675 106 QLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDC 138 (235)
Q Consensus 106 ~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~ 138 (235)
+|++|+|++|.++.++.. +..+++|+.|+|.+|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 345555555555544433 234445555555543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.37 E-value=0.026 Score=39.20 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=32.6
Q ss_pred EEeecCCcCCc--ccccccccCCccCeeeccccccccccCC-CCCCCCCCceEEecCcccc
Q 026675 61 QLTLNGCKNLE--RLPRTTSALKYLSTLNLSSLLKFREFPE-KTSGKDQLLEIHLEGTAIR 118 (235)
Q Consensus 61 ~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~ 118 (235)
.++.++ ..++ .+|..+ .++|++|+|++ +.++.+|. .+..+++|++|+|.+|.+.
T Consensus 12 ~v~Cs~-~~L~~~~vP~~l--p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAF--PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCS-SCCCTTTSCSCC--CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCC-CCCccccCCCCC--CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCee
Confidence 455555 3344 566543 34577777777 45555653 4556777777877777554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=48.35 E-value=21 Score=22.96 Aligned_cols=46 Identities=15% Similarity=0.023 Sum_probs=26.5
Q ss_pred ccCccccch-hhhhccCCcEEeecCCcCCcccc-cccccCCccCeeeccc
Q 026675 43 GIDTRELSF-AIELLFRLVQLTLNGCKNLERLP-RTTSALKYLSTLNLSS 90 (235)
Q Consensus 43 ~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~ 90 (235)
|.++..+.. .|.+|.+|+.+.+... ++.+. ..|.++.+|+.+.+.+
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 333444443 5666777777777652 34443 3466677777776665
Done!