BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026676
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 21/152 (13%)
Query: 24 LLDEINPKAARFPCCLVWTPLPVVSWLAPFIGHVGICREDGVSL--------DFSG-SNL 74
LL NP A C+ P + + L P++ V I R + +++ D +G +
Sbjct: 182 LLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY 241
Query: 75 VNVDEFAVGAVARYLQLDRKQCCFPPNLSGHTCKQGYQHSEFGTAMTWDDALQLSNRQFE 134
++V + A G +A +L + C NL T GY + AM ++ +
Sbjct: 242 IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGT---GYSVLQMVQAMEKASGKKIPYKVVA 298
Query: 135 HRTYNIFTCNSHSFVAN---------CLNRLC 157
R ++ C ++ +A L+R+C
Sbjct: 299 RREGDVAACYANPSLAQEELGWTAALGLDRMC 330
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 21/152 (13%)
Query: 24 LLDEINPKAARFPCCLVWTPLPVVSWLAPFIGHVGICREDGVSL--------DFSG-SNL 74
LL NP A C+ P + + L P++ V I R + +++ D +G +
Sbjct: 182 LLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY 241
Query: 75 VNVDEFAVGAVARYLQLDRKQCCFPPNLSGHTCKQGYQHSEFGTAMTWDDALQLSNRQFE 134
++V + A G +A +L + C NL T GY + AM ++ +
Sbjct: 242 IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGT---GYSVLQMVQAMEKASGKKIPYKVVA 298
Query: 135 HRTYNIFTCNSHSFVAN---------CLNRLC 157
R ++ C ++ +A L+R+C
Sbjct: 299 RREGDVAACYANPSLAQEELGWTAALGLDRMC 330
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 21/152 (13%)
Query: 24 LLDEINPKAARFPCCLVWTPLPVVSWLAPFIGHVGICREDGVSL--------DFSG-SNL 74
LL NP A C+ P + + L P++ V I R + +++ D +G +
Sbjct: 182 LLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY 241
Query: 75 VNVDEFAVGAVARYLQLDRKQCCFPPNLSGHTCKQGYQHSEFGTAMTWDDALQLSNRQFE 134
++V + A G +A +L + C NL T GY + AM ++ +
Sbjct: 242 IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGT---GYSVLQMVQAMEKASGKKIPYKVVA 298
Query: 135 HRTYNIFTCNSHSFVAN---------CLNRLC 157
R ++ C ++ +A L+R+C
Sbjct: 299 RREGDVAACYANPSLAQEELGWTAALGLDRMC 330
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
pdb|1U7C|A Chain A, Crystal Structure Of Amtb From E.Coli With Methyl
Ammonium.
pdb|1U7G|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
Length = 385
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 18/81 (22%)
Query: 34 RFPCCLVWTPLPVVSWLA----PFIGHV----GICREDGVSLDFSGSNLVNVDEFAVGAV 85
RFP L++ VV WL P I H G+ G +LDF+G +V+++ G V
Sbjct: 124 RFPAVLIF----VVVWLTLSYIP-IAHXVWGGGLLASHG-ALDFAGGTVVHINAAIAGLV 177
Query: 86 ARYLQLDR----KQCCFPPNL 102
YL R K+ P NL
Sbjct: 178 GAYLIGKRVGFGKEAFKPHNL 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.469
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,728,207
Number of Sequences: 62578
Number of extensions: 248328
Number of successful extensions: 598
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 597
Number of HSP's gapped (non-prelim): 5
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)