BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026676
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4ITL6|RTE1_ARATH Protein REVERSION-TO-ETHYLENE SENSITIVITY1 OS=Arabidopsis thaliana
GN=RTE1 PE=1 SV=1
Length = 250
Score = 337 bits (863), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 153/240 (63%), Positives = 190/240 (79%), Gaps = 7/240 (2%)
Query: 1 MNIKAAYDIEH----VSSTSKIDHE---LWLLDEINPKAARFPCCLVWTPLPVVSWLAPF 53
M++K +YD+E VS S I+ + LW L EI+ K ++FPCC+VWTPLPVVSWLAPF
Sbjct: 10 MDLKRSYDVEDRVVSVSIPSIIEADEADLWPLPEIDTKKSKFPCCIVWTPLPVVSWLAPF 69
Query: 54 IGHVGICREDGVSLDFSGSNLVNVDEFAVGAVARYLQLDRKQCCFPPNLSGHTCKQGYQH 113
IGH+G+CREDGV LDF+GSN +NVD+FA G ARYLQLDR +CC PPN+ GHTCK G++H
Sbjct: 70 IGHIGLCREDGVILDFAGSNFINVDDFAFGPPARYLQLDRTKCCLPPNMGGHTCKYGFKH 129
Query: 114 SEFGTAMTWDDALQLSNRQFEHRTYNIFTCNSHSFVANCLNRLCYGGSMSWNMTNVAALI 173
++FGTA TWD+AL S R FEH+TYNIFTCN HSFVANCLNRLCYGGSM WNM NVA L+
Sbjct: 130 TDFGTARTWDNALSSSTRSFEHKTYNIFTCNCHSFVANCLNRLCYGGSMEWNMVNVAILL 189
Query: 174 LFKGHWVNSTSIIRSFLPFTVVACLGLLIVGWPFLIGLFSLSFLLLGWYLLGTYCVKGLL 233
+ KG W+N +S++RSFLP VV LG+++VGWPFLIGL S S LL W+++ TYC K ++
Sbjct: 190 MIKGKWINGSSVVRSFLPCAVVTSLGVVLVGWPFLIGLSSFSLLLFAWFIIATYCFKNII 249
>sp|Q9SD42|RTH_ARATH Protein RTE1-HOMOLOG OS=Arabidopsis thaliana GN=RTH PE=2 SV=1
Length = 231
Score = 224 bits (571), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 110/211 (52%), Positives = 147/211 (69%), Gaps = 4/211 (1%)
Query: 27 EINPKAARFPCCLVWTPLPVVSWLAPFIGHVGICREDGVSLDFSGSNLVNVDEFAVGAVA 86
+I+PK RFPCC+VWTPLP +SWL PFIGHVGICREDGV LDF+G N V VD FA GAV+
Sbjct: 21 KIDPKRDRFPCCIVWTPLPFISWLVPFIGHVGICREDGVILDFAGPNFVCVDNFAFGAVS 80
Query: 87 RYLQLDRKQCCFPPNLSG-HTCKQGYQHSE--FGTAMTWDDALQLSNRQFEHRTYNIFTC 143
RY+Q++++ + SG ++ Y+ E TWDDAL+ S ++++H +YNI TC
Sbjct: 81 RYIQINKEMESSRSSSSGMFNGERRYEQEEDSHEKEPTWDDALRKSTQEYQHHSYNILTC 140
Query: 144 NSHSFVANCLNRLCYGGSMSWNMTNVAALILFKGHWVNSTSIIRSFLPFTVVACLGLLIV 203
N HSFVAN LNRL S WN+ N+A L+LFKG WVN T+I++S LP +V +G+L+
Sbjct: 141 NCHSFVANNLNRLSI-KSGGWNVVNLATLVLFKGRWVNKTAIVKSLLPPLIVYTIGILLG 199
Query: 204 GWPFLIGLFSLSFLLLGWYLLGTYCVKGLLE 234
GW F+ L LL GW+++GTYC K L++
Sbjct: 200 GWTFIASCSILVVLLTGWFIIGTYCFKKLIQ 230
>sp|Q9H0R3|TM222_HUMAN Transmembrane protein 222 OS=Homo sapiens GN=TMEM222 PE=2 SV=2
Length = 208
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 96/177 (54%), Gaps = 22/177 (12%)
Query: 28 INPKAARFPCCLVWTPLPVVSWLAPFIGHVGICREDGVSLDFSGSNLVNVDEFAVGAVAR 87
++ + +RFP C+VWTP+PV++W P IGH+GIC GV DF+G V+ D A G A+
Sbjct: 45 MDVERSRFPYCVVWTPIPVLTWFFPIIGHMGICTSTGVIRDFAGPYFVSEDNMAFGKPAK 104
Query: 88 YLQLDRKQC-CFPPNLSGHTCKQGYQHSEFGTAMTWDDALQLSNRQFEHRTYNIFTCNSH 146
Y +LD Q PN WD A+ ++ +++HR +N+ N H
Sbjct: 105 YWKLDPAQVYASGPN-------------------AWDTAVHDASEEYKHRMHNLCCDNCH 145
Query: 147 SFVANCLNRLCYGGSMSWNMTNVAALILFKGHWVNSTSIIRSFLPFTVVACLGLLIV 203
S VA LN + Y S +WNM + L G +V+ + ++++LPF ++ LG+++
Sbjct: 146 SHVALALNLMRYNNSTNWNMVTLCFFCLLYGKYVSVGAFVKTWLPFILL--LGIILT 200
>sp|Q8BVA2|TM222_MOUSE Transmembrane protein 222 OS=Mus musculus GN=Tmem222 PE=2 SV=1
Length = 208
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 22/176 (12%)
Query: 28 INPKAARFPCCLVWTPLPVVSWLAPFIGHVGICREDGVSLDFSGSNLVNVDEFAVGAVAR 87
++ + +RFP C+VWTP+PV++W P IGH+GIC GV DF+G V+ D A G A+
Sbjct: 45 MDVERSRFPYCVVWTPIPVLTWFFPIIGHMGICTSAGVIRDFAGPYFVSEDNMAFGKPAK 104
Query: 88 YLQLDRKQC-CFPPNLSGHTCKQGYQHSEFGTAMTWDDALQLSNRQFEHRTYNIFTCNSH 146
+ +LD Q PN WD A+ ++ +++HR +N+ N H
Sbjct: 105 FWKLDPGQVYASGPN-------------------AWDTAVHDASEEYKHRMHNLCCDNCH 145
Query: 147 SFVANCLNRLCYGGSMSWNMTNVAALILFKGHWVNSTSIIRSFLPFTVVACLGLLI 202
S VA LN + Y S +WNM + L G +V+ + ++++LPF ++ LG+++
Sbjct: 146 SHVALALNLMRYNNSTNWNMVTLCCFCLIYGKYVSVGAFVKTWLPFVLL--LGIIL 199
>sp|A0KRB5|MTNC_SHESA Enolase-phosphatase E1 OS=Shewanella sp. (strain ANA-3) GN=mtnC
PE=3 SV=1
Length = 226
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 59 ICREDGVSLDFSGSNLVNVDEFAVGAVARYLQLDRKQCCFPPNLSGHTCKQGYQHSEFGT 118
IC ++L+ +NL V E + +++ DRK L G KQGY H EF T
Sbjct: 49 ICDTRDIALE-PDANLARVTEI----LQQWVHEDRKATPLK-TLQGLIWKQGYAHGEF-T 101
Query: 119 AMTWDDALQLSNRQFEHRTYNIFTCNSHSFVANCLNRLCYGGSMSWNMTNVAALILFKGH 178
+ D ++ NR F + I++ +S S A +L + S ++T +F GH
Sbjct: 102 GHIFPDFIEAVNR-FSAQKLRIYSFSSGSVEA---QKLLFSHSDGGDLTE-----MFSGH 152
Query: 179 WVNST 183
+ T
Sbjct: 153 FDTRT 157
>sp|Q5B5S8|BGLA_EMENI Probable beta-glucosidase A OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=bglA
PE=3 SV=2
Length = 863
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 77 VDEFAVGAVARYLQLDRKQCCFPPNLSGHT-CKQGYQHSE-----FGTAMTWDDALQ 127
VD+ AV +A + ++ R + PPN S T ++GY+H+ +GT + D Q
Sbjct: 333 VDDMAVRVMAAFYKVGRDRLATPPNFSSWTRAEKGYEHASIDGGAYGTVNEFVDVQQ 389
>sp|Q9P2S2|NRX2A_HUMAN Neurexin-2 OS=Homo sapiens GN=NRXN2 PE=2 SV=1
Length = 1712
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 61/184 (33%), Gaps = 47/184 (25%)
Query: 43 PLPVVSWLAPF-IGHVGICRE---DGVSLDFSGSNLVNVDEFAVGAVARYLQLDRKQCCF 98
PLP W A G+VG R+ DG S D G + + AVG + KQC
Sbjct: 640 PLPPEVWTAALRAGYVGCVRDLFIDGRSRDLRG---LAEAQGAVGVAPFCSRETLKQCAS 696
Query: 99 PPNLSGHTCKQGYQH---------------SEFGTAMTWD---------------DALQL 128
P +G C++G+ T +++D +A +
Sbjct: 697 APCRNGGVCREGWNRFICDCIGTGFLGRVCEREATVLSYDGSMYMKIMLPNAMHTEAEDV 756
Query: 129 SNRQFEHRTYNIFTCNSHSFVANCLNRLCYGGSMSWNMT----------NVAALILFKGH 178
S R R Y + + A+ L GG M + + LF GH
Sbjct: 757 SLRFMSQRAYGLMMATTSRESADTLRLELDGGQMKLTVNLDCLRVGCAPSKGPETLFAGH 816
Query: 179 WVNS 182
+N
Sbjct: 817 KLND 820
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.140 0.477
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,405,609
Number of Sequences: 539616
Number of extensions: 3629706
Number of successful extensions: 9622
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9614
Number of HSP's gapped (non-prelim): 10
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)