Query 026676
Match_columns 235
No_of_seqs 114 out of 141
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 11:10:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3150 Uncharacterized conser 100.0 5.7E-92 1.2E-96 595.3 13.4 165 26-210 17-181 (182)
2 PF05608 DUF778: Protein of un 100.0 1.9E-76 4.2E-81 488.1 10.0 136 44-179 1-136 (136)
3 PF04970 LRAT: Lecithin retino 95.0 0.025 5.5E-07 44.8 3.5 35 120-154 86-121 (125)
4 KOG2990 C2C2-type Zn-finger pr 86.9 0.58 1.3E-05 44.2 3.1 40 104-152 18-65 (317)
5 PF05903 Peptidase_C97: PPPDE 85.2 0.61 1.3E-05 38.9 2.1 41 118-158 83-123 (151)
6 KOG0324 Uncharacterized conser 79.3 3.7 8E-05 37.2 4.9 54 119-173 87-140 (214)
7 PF06716 DUF1201: Protein of u 74.8 8.5 0.00018 27.8 4.8 35 185-230 4-38 (54)
8 PF14133 DUF4300: Domain of un 61.1 6 0.00013 36.4 2.2 59 15-76 150-214 (250)
9 PF03742 PetN: PetN ; InterPr 60.0 14 0.0003 24.0 3.1 22 200-221 3-24 (29)
10 PRK06266 transcription initiat 56.6 8.9 0.00019 33.2 2.4 13 83-95 77-89 (178)
11 cd03512 Alkane-hydroxylase Alk 53.2 35 0.00077 31.7 5.9 44 182-227 179-222 (314)
12 PF13829 DUF4191: Domain of un 49.1 46 0.001 30.4 5.8 41 185-225 32-72 (224)
13 PF07311 Dodecin: Dodecin; In 48.0 12 0.00027 28.0 1.6 23 118-140 12-34 (66)
14 PF11255 DUF3054: Protein of u 47.2 24 0.00053 28.6 3.4 25 174-198 18-42 (112)
15 PRK02935 hypothetical protein; 42.0 1.1E+02 0.0023 25.4 6.3 30 178-207 4-33 (110)
16 PF10777 YlaC: Inner membrane 39.8 75 0.0016 27.7 5.4 44 181-225 38-81 (155)
17 PF09746 Membralin: Tumour-ass 39.5 65 0.0014 31.5 5.5 124 81-223 201-360 (375)
18 PF11023 DUF2614: Protein of u 38.0 1.2E+02 0.0026 25.3 6.0 30 178-207 3-32 (114)
19 PF12270 Cyt_c_ox_IV: Cytochro 34.2 85 0.0018 26.7 4.8 30 194-223 99-128 (137)
20 PF10058 DUF2296: Predicted in 33.8 22 0.00048 25.4 1.1 19 135-153 18-36 (54)
21 PRK10714 undecaprenyl phosphat 32.7 1.8E+02 0.004 26.7 7.1 12 160-171 206-217 (325)
22 PF04246 RseC_MucC: Positive r 32.5 2.2E+02 0.0048 22.8 6.8 44 183-227 70-117 (135)
23 PF12616 DUF3775: Protein of u 30.9 48 0.001 25.3 2.5 41 118-158 33-75 (75)
24 PF13387 DUF4105: Domain of un 27.9 38 0.00083 28.5 1.7 38 122-160 114-151 (176)
25 PF05708 DUF830: Orthopoxvirus 27.6 1.2E+02 0.0027 24.2 4.6 83 53-158 27-123 (158)
26 PF07787 DUF1625: Protein of u 26.2 94 0.002 27.7 4.0 60 163-224 183-246 (248)
27 PF04217 DUF412: Protein of un 25.9 1.2E+02 0.0027 26.0 4.4 63 163-225 15-84 (143)
28 COG3360 Uncharacterized conser 25.9 55 0.0012 25.2 2.1 25 116-140 13-37 (71)
29 KOG4718 Non-SMC (structural ma 25.5 21 0.00046 32.8 -0.3 26 124-150 164-192 (235)
30 TIGR01592 holin_SPP1 holin, SP 24.6 1.3E+02 0.0028 23.2 3.9 28 181-208 2-29 (75)
31 PF11241 DUF3043: Protein of u 24.4 1.8E+02 0.004 25.5 5.3 19 184-202 76-94 (170)
32 KOG4623 Uncharacterized conser 24.0 2.7E+02 0.0057 29.0 7.0 59 118-182 125-203 (611)
33 COG4420 Predicted membrane pro 23.2 83 0.0018 28.3 3.0 11 180-190 55-65 (191)
34 PRK14747 cytochrome b6-f compl 23.0 12 0.00025 24.3 -1.7 21 201-221 4-24 (29)
35 PF10958 DUF2759: Protein of u 22.9 1.2E+02 0.0026 22.1 3.2 19 210-228 26-44 (52)
36 PF14701 hDGE_amylase: glucano 22.6 91 0.002 30.9 3.4 32 121-153 378-412 (423)
37 PF14241 DUF4341: Domain of un 20.9 2.3E+02 0.005 20.5 4.5 39 168-206 15-60 (62)
38 PF11460 DUF3007: Protein of u 20.4 1.2E+02 0.0027 24.8 3.2 17 212-230 40-56 (104)
39 PF14207 DpnD-PcfM: DpnD/PcfM- 20.2 85 0.0018 22.1 2.0 23 118-140 17-39 (48)
No 1
>KOG3150 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.7e-92 Score=595.30 Aligned_cols=165 Identities=57% Similarity=1.129 Sum_probs=158.4
Q ss_pred CCCCCCCCCCCceEEcccccchhhhccccceeeeecCCceEEeCCCCeeeccCceeecceeeeeecCCCcccCCCCCCCC
Q 026676 26 DEINPKAARFPCCLVWTPLPVVSWLAPFIGHVGICREDGVSLDFSGSNLVNVDEFAVGAVARYLQLDRKQCCFPPNLSGH 105 (235)
Q Consensus 26 ~~IDp~~~rfP~CIVWTPIPviSWl~PfIGH~GIc~S~GvI~DFaGpy~V~~D~maFG~ptrY~qLd~~~~c~p~~~~~~ 105 (235)
.+|||||+||||||||||||++|||+|||||||||+|+|||+||||||||+|||||||+|+|||||||+|+|.
T Consensus 17 ~~id~k~~rfPyCIVWTPiPvltWl~PfIGHmGic~s~GVIrDFAGpyfV~eDnmaFG~paRY~ql~p~~~~~------- 89 (182)
T KOG3150|consen 17 LEIDPKRSRFPYCIVWTPIPVLTWLFPFIGHMGICRSDGVIRDFAGPYFVSEDNMAFGPPARYIQLDPEKVCG------- 89 (182)
T ss_pred cccCcccCCCCeEEEecChHHHHHHHhhccceeeecCCCeEEeccCCceeeccccccCCcceeEEeChhheeC-------
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CccCCccccCCCCcccHHHHHHHHHHHhcccccccccCCcHHHHHHHhhccCCCCCCCchHHHHHHHHHhhceeeChhhH
Q 026676 106 TCKQGYQHSEFGTAMTWDDALQLSNRQFEHRTYNIFTCNSHSFVANCLNRLCYGGSMSWNMTNVAALILFKGHWVNSTSI 185 (235)
Q Consensus 106 ~~~~~~~~~~~g~~~~WD~Av~~a~~~f~~r~hNLf~~NCHS~VA~~LN~m~Y~g~~~WNmv~la~l~~~~GryVs~~~~ 185 (235)
.++.+||+||++|+++||||+||+||||||||||+|||+|+|+++++||||+||++++++||||+.+++
T Consensus 90 -----------~g~~~wD~Av~~as~~y~hr~hNi~cdNCHShVA~aLn~mry~~s~~WNmvnla~~~l~kGk~V~~~~~ 158 (182)
T KOG3150|consen 90 -----------PGARTWDNAVSKASREYKHRTHNIFCDNCHSHVANALNRMRYGGSTEWNMVNLAILLLIKGKWVNGTAF 158 (182)
T ss_pred -----------CCCchHHHHHHHHHHHhhhcccceeeccHHHHHHHHHHHhhcCCCCCchHHHHHHHHHhhceeeccchH
Confidence 367899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhhHHHHHH
Q 026676 186 IRSFLPFTVVACLGLLIVGWPFLIG 210 (235)
Q Consensus 186 lkt~LPF~ii~~igvl~~gw~fl~~ 210 (235)
+||||||+++ +||+++||+|+++
T Consensus 159 vks~LPfv~~--lgI~l~~w~f~~~ 181 (182)
T KOG3150|consen 159 VKSWLPFVIL--LGIFLVGWPFLIG 181 (182)
T ss_pred HHHHhhHHHH--HHHHHHHHHHHhc
Confidence 9999996665 4999999999976
No 2
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=1.9e-76 Score=488.12 Aligned_cols=136 Identities=57% Similarity=1.132 Sum_probs=134.8
Q ss_pred ccchhhhccccceeeeecCCceEEeCCCCeeeccCceeecceeeeeecCCCcccCCCCCCCCCccCCccccCCCCcccHH
Q 026676 44 LPVVSWLAPFIGHVGICREDGVSLDFSGSNLVNVDEFAVGAVARYLQLDRKQCCFPPNLSGHTCKQGYQHSEFGTAMTWD 123 (235)
Q Consensus 44 IPviSWl~PfIGH~GIc~S~GvI~DFaGpy~V~~D~maFG~ptrY~qLd~~~~c~p~~~~~~~~~~~~~~~~~g~~~~WD 123 (235)
||+||||+|||||||||||+|||+||||||+||||+||||+||||||||+++||+|+++++|+|++++++++.+++++||
T Consensus 1 iP~lsWl~PfIGH~GIc~s~GvI~DFaG~y~V~~d~~aFG~p~rY~qld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wD 80 (136)
T PF05608_consen 1 IPVLSWLFPFIGHMGICDSDGVIRDFAGPYFVSVDNMAFGSPTRYWQLDPDKCCSAPNLSGHNCEEGYEHAELGGAESWD 80 (136)
T ss_pred CceeeeehhhccceEeecCCceEEecCCCcEEcCCccccCCceEEEEeCHHHCccccccccccccccccccccccHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccCCcHHHHHHHhhccCCCCCCCchHHHHHHHHHhhcee
Q 026676 124 DALQLSNRQFEHRTYNIFTCNSHSFVANCLNRLCYGGSMSWNMTNVAALILFKGHW 179 (235)
Q Consensus 124 ~Av~~a~~~f~~r~hNLf~~NCHS~VA~~LN~m~Y~g~~~WNmv~la~l~~~~Gry 179 (235)
+||++|++|||+|+|||||||||||||+|||+|+|+|+++||||+||++|++||||
T Consensus 81 ~Av~~a~~~y~~r~yNlf~~NCHSfVA~aLN~m~Y~g~~~WNmv~La~l~~~~Gr~ 136 (136)
T PF05608_consen 81 DAVQKASEEYKHRMYNLFTDNCHSFVANALNRMRYGGSGNWNMVNLAALMFFHGRY 136 (136)
T ss_pred HHHHHHHHHHhhCceeeeccCcHHHHHHHHHhccCCCCCCcHHHHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999999999999999999998
No 3
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=95.03 E-value=0.025 Score=44.81 Aligned_cols=35 Identities=14% Similarity=0.331 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHHHhc-ccccccccCCcHHHHHHHhh
Q 026676 120 MTWDDALQLSNRQFE-HRTYNIFTCNSHSFVANCLN 154 (235)
Q Consensus 120 ~~WD~Av~~a~~~f~-~r~hNLf~~NCHS~VA~~LN 154 (235)
..=++++++|.+.-. ..-|||+.+||++||..|..
T Consensus 86 ~~~~~iv~rA~~~lg~~~~Y~l~~nNCEhFa~~c~t 121 (125)
T PF04970_consen 86 FPPEEIVERAESRLGKEFEYNLLFNNCEHFATWCRT 121 (125)
T ss_dssp S-HHHHHHHHHHTTT-EESS---HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCccCCCcCCHHHHHHHHHc
Confidence 456799999999988 68999999999999999875
No 4
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=86.89 E-value=0.58 Score=44.22 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=31.7
Q ss_pred CCCccCCccccCCCCcccHHHHHHHHHHHhcc--------cccccccCCcHHHHHHH
Q 026676 104 GHTCKQGYQHSEFGTAMTWDDALQLSNRQFEH--------RTYNIFTCNSHSFVANC 152 (235)
Q Consensus 104 ~~~~~~~~~~~~~g~~~~WD~Av~~a~~~f~~--------r~hNLf~~NCHS~VA~~ 152 (235)
-|-...+|+.. .|+++..+.+.+ ..||+-|++||+|+++-
T Consensus 18 ~~gsln~~~g~---------h~lrerarKi~~gilvIRFEMPynIWC~gC~nhIgmG 65 (317)
T KOG2990|consen 18 KHGSLNKYHGT---------HALRERARKIDQGILVIRFEMPYNIWCDGCKNHIGMG 65 (317)
T ss_pred ccCcccccccc---------hhHHHHHHhhccceEEEEEecccchhhccHHHhhhcc
Confidence 56666667532 689988888876 67999999999999875
No 5
>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences. The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.
Probab=85.15 E-value=0.61 Score=38.92 Aligned_cols=41 Identities=17% Similarity=0.321 Sum_probs=33.0
Q ss_pred CcccHHHHHHHHHHHhcccccccccCCcHHHHHHHhhccCC
Q 026676 118 TAMTWDDALQLSNRQFEHRTYNIFTCNSHSFVANCLNRLCY 158 (235)
Q Consensus 118 ~~~~WD~Av~~a~~~f~~r~hNLf~~NCHS~VA~~LN~m~Y 158 (235)
+.++-++.|++-+++|....|||+.+||.+|.....+.|.=
T Consensus 83 ~~~~~~~~l~~l~~~~~~~~Y~Ll~~NCNhFs~~l~~~L~g 123 (151)
T PF05903_consen 83 SEEEFEEILRSLSREFTGDSYHLLNRNCNHFSDALCQFLTG 123 (151)
T ss_dssp -HHHHHHHHHHHHTT-SGGG-BTTTBSHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhhccCCcchhhhhhhhHHHHHHHHHhCC
Confidence 44567788888888999999999999999999999888753
No 6
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.30 E-value=3.7 Score=37.24 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=40.6
Q ss_pred cccHHHHHHHHHHHhcccccccccCCcHHHHHHHhhccCCCCCCCchHHHHHHHH
Q 026676 119 AMTWDDALQLSNRQFEHRTYNIFTCNSHSFVANCLNRLCYGGSMSWNMTNVAALI 173 (235)
Q Consensus 119 ~~~WD~Av~~a~~~f~~r~hNLf~~NCHS~VA~~LN~m~Y~g~~~WNmv~la~l~ 173 (235)
...-++-+++-.++|+-.+|||++.||-+|....--++.=+.--+| .-.||-..
T Consensus 87 ~~~v~~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~w-inrLa~~~ 140 (214)
T KOG0324|consen 87 EDDVRRILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSW-VNRLARAG 140 (214)
T ss_pred HHHHHHHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHH-HHHHHHHh
Confidence 3478889999999999999999999999998776555555554556 34444433
No 7
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=74.77 E-value=8.5 Score=27.80 Aligned_cols=35 Identities=26% Similarity=0.685 Sum_probs=23.0
Q ss_pred HHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 026676 185 IIRSFLPFTVVACLGLLIVGWPFLIGLFSLSFLLLGWYLLGTYCVK 230 (235)
Q Consensus 185 ~lkt~LPF~ii~~igvl~~gw~fl~~~~~f~~~l~gwf~~~ty~~k 230 (235)
++|+|||+. ..|++-++.|.+...-||+.---.+|
T Consensus 4 vLRs~L~~~-----------F~~lIC~Fl~~~~~F~~F~~Kqilfr 38 (54)
T PF06716_consen 4 VLRSYLLLA-----------FGFLICLFLFCLVVFIWFVYKQILFR 38 (54)
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 688998864 44555556666777778887554444
No 8
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=61.07 E-value=6 Score=36.41 Aligned_cols=59 Identities=24% Similarity=0.373 Sum_probs=30.5
Q ss_pred cccccccccccCCCCCCCCCCCceEEcccccchhhhccccceeeee--cCCceE----EeCCCCeeec
Q 026676 15 TSKIDHELWLLDEINPKAARFPCCLVWTPLPVVSWLAPFIGHVGIC--REDGVS----LDFSGSNLVN 76 (235)
Q Consensus 15 ~~~~~~~~~~~~~IDp~~~rfP~CIVWTPIPviSWl~PfIGH~GIc--~S~GvI----~DFaGpy~V~ 76 (235)
.+++| +.|.--.|-.+.++--.-=||..=|==. .=||||+||. +++|.+ +.|.-||-+.
T Consensus 150 ~~~i~-k~wk~rgi~F~~~k~slISV~~h~~d~~--~lFvGH~GVLv~~~dg~LFiEKlaf~ePYQa~ 214 (250)
T PF14133_consen 150 AEKIQ-KYWKERGIKFNNDKASLISVFLHDPDDN--SLFVGHTGVLVPTKDGYLFIEKLAFEEPYQAT 214 (250)
T ss_pred HHHHH-HHHHHcCceeCCCceEEEEEEEEcCCCC--eEEeeeEEEEEEcCCcEEEEEeeCCCCCceeE
Confidence 44555 6777655544444433333443332111 2389999987 445543 3455555443
No 9
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=59.98 E-value=14 Score=23.98 Aligned_cols=22 Identities=32% Similarity=0.887 Sum_probs=19.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH
Q 026676 200 LLIVGWPFLIGLFSLSFLLLGW 221 (235)
Q Consensus 200 vl~~gw~fl~~~~~f~~~l~gw 221 (235)
++-.||..+...+.|++-|+.|
T Consensus 3 iv~lgWaal~~~ftfSlalVVW 24 (29)
T PF03742_consen 3 IVSLGWAALMVVFTFSLALVVW 24 (29)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHhccceeEEE
Confidence 4567999999999999999998
No 10
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=56.59 E-value=8.9 Score=33.16 Aligned_cols=13 Identities=0% Similarity=-0.143 Sum_probs=12.0
Q ss_pred cceeeeeecCCCc
Q 026676 83 GAVARYLQLDRKQ 95 (235)
Q Consensus 83 G~ptrY~qLd~~~ 95 (235)
|+|+.||+||.++
T Consensus 77 Gr~~y~w~l~~~~ 89 (178)
T PRK06266 77 NWYTYTWKPELEK 89 (178)
T ss_pred CcEEEEEEeCHHH
Confidence 9999999998876
No 11
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=53.16 E-value=35 Score=31.73 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=31.4
Q ss_pred hhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhh
Q 026676 182 STSIIRSFLPFTVVACLGLLIVGWPFLIGLFSLSFLLLGWYLLGTY 227 (235)
Q Consensus 182 ~~~~lkt~LPF~ii~~igvl~~gw~fl~~~~~f~~~l~gwf~~~ty 227 (235)
.-.+++.++--++++++.+.++||..+..+++.+ ++||+++-+.
T Consensus 179 ~n~~l~~~~~~~a~~~~~~~~~g~~~l~~~l~~~--~~g~~~l~~~ 222 (314)
T cd03512 179 RNEVLRYLALAVALLALAAALGGLAGLLFLLIQA--FYAKSLLELV 222 (314)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 4456777777777777788888898887766655 5667776655
No 12
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=49.11 E-value=46 Score=30.39 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=29.5
Q ss_pred HHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 026676 185 IIRSFLPFTVVACLGLLIVGWPFLIGLFSLSFLLLGWYLLG 225 (235)
Q Consensus 185 ~lkt~LPF~ii~~igvl~~gw~fl~~~~~f~~~l~gwf~~~ 225 (235)
+.-..+|.++.+.+|+++++|.|.+-+.....+|+.=++++
T Consensus 32 l~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~ 72 (224)
T PF13829_consen 32 LGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLS 72 (224)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 34445688889999999999888776666666666666554
No 13
>PF07311 Dodecin: Dodecin; InterPro: IPR009923 This entry represents proteins with a Dodecin-like topology. Dodecin flavoprotein is a small dodecameric flavin-binding protein from Halobacterium salinarium (Halobacterium halobium) that contains two flavins stacked in a single binding pocket between two tryptophan residues to form an aromatic tetrade []. Dodecin binds riboflavin, although it appears to have a broad specificity for flavins. Lumichrome, a molecule associated with flavin metabolism, appears to be a ligand of dodecin, which could act as a waste-trapping device. ; PDB: 2VYX_L 2DEG_F 2V18_K 2V19_D 2UX9_B 2CZ8_E 2V21_F 2CC8_A 2CCB_A 2VX9_A ....
Probab=47.97 E-value=12 Score=28.02 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=18.7
Q ss_pred CcccHHHHHHHHHHHhccccccc
Q 026676 118 TAMTWDDALQLSNRQFEHRTYNI 140 (235)
Q Consensus 118 ~~~~WD~Av~~a~~~f~~r~hNL 140 (235)
..++||||++.|.++=.+-.+|+
T Consensus 12 S~~S~edAv~~Av~~A~kTl~ni 34 (66)
T PF07311_consen 12 SPKSWEDAVQNAVARASKTLRNI 34 (66)
T ss_dssp ESSHHHHHHHHHHHHHHHHSSSE
T ss_pred CCCCHHHHHHHHHHHHhhchhCc
Confidence 34689999999999877777765
No 14
>PF11255 DUF3054: Protein of unknown function (DUF3054); InterPro: IPR021414 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=47.24 E-value=24 Score=28.57 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=17.3
Q ss_pred HhhceeeChhhHHHHHHhHHHHHHH
Q 026676 174 LFKGHWVNSTSIIRSFLPFTVVACL 198 (235)
Q Consensus 174 ~~~GryVs~~~~lkt~LPF~ii~~i 198 (235)
.-||.=++..+.++|..||++=..+
T Consensus 18 ~sHg~~~~~~~~l~Ta~PFl~Gw~~ 42 (112)
T PF11255_consen 18 ISHGEALSPAGVLRTAWPFLVGWLL 42 (112)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHHH
Confidence 4577777788888888887654433
No 15
>PRK02935 hypothetical protein; Provisional
Probab=41.98 E-value=1.1e+02 Score=25.44 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=22.3
Q ss_pred eeeChhhHHHHHHhHHHHHHHHHHHhhHHH
Q 026676 178 HWVNSTSIIRSFLPFTVVACLGLLIVGWPF 207 (235)
Q Consensus 178 ryVs~~~~lkt~LPF~ii~~igvl~~gw~f 207 (235)
+|-|.-.=+|||.-.++++++++.++|-.|
T Consensus 4 k~ssKINkiRt~aL~lvfiG~~vMy~Giff 33 (110)
T PRK02935 4 KYSNKINKIRTFALSLVFIGFIVMYLGIFF 33 (110)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666778888888888888888877444
No 16
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=39.82 E-value=75 Score=27.74 Aligned_cols=44 Identities=9% Similarity=0.221 Sum_probs=32.3
Q ss_pred ChhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 026676 181 NSTSIIRSFLPFTVVACLGLLIVGWPFLIGLFSLSFLLLGWYLLG 225 (235)
Q Consensus 181 s~~~~lkt~LPF~ii~~igvl~~gw~fl~~~~~f~~~l~gwf~~~ 225 (235)
=+.+++-+|+|.++++.-.-.+ ||+-+.|...|.+++.+-+++-
T Consensus 38 L~~~M~~~y~~~~~lm~~spy~-G~~s~~~ftv~fv~m~~~llfD 81 (155)
T PF10777_consen 38 LCLAMYAAYLAVAALMYYSPYF-GLGSVWGFTVFFVVMAAFLLFD 81 (155)
T ss_pred HHHHHHHHHHHHHHHHHhcchh-hhHHHHHHHHHHHHHHHHHHhh
Confidence 3578889999988888766666 6777777777777777766653
No 17
>PF09746 Membralin: Tumour-associated protein; InterPro: IPR019144 Membralin is evolutionarily highly conserved, though it appears to represent a unique protein family. The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers []. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato [].
Probab=39.54 E-value=65 Score=31.54 Aligned_cols=124 Identities=20% Similarity=0.320 Sum_probs=69.2
Q ss_pred eecceeeeeecCC-CcccCCCCCCCCCccCCccccCCCCcccHHHHHHHHHHHh------cccccccccCCcHHHHHHH-
Q 026676 81 AVGAVARYLQLDR-KQCCFPPNLSGHTCKQGYQHSEFGTAMTWDDALQLSNRQF------EHRTYNIFTCNSHSFVANC- 152 (235)
Q Consensus 81 aFG~ptrY~qLd~-~~~c~p~~~~~~~~~~~~~~~~~g~~~~WD~Av~~a~~~f------~~r~hNLf~~NCHS~VA~~- 152 (235)
..+=|+.-.+||| +.-|| ..+++.--.++--.||+.+-.+.+.- +.-.||+.|.-=..||..-
T Consensus 201 ~~nI~~~~v~ldp~~~~Cf---------G~~~~r~ll~~f~GYd~~lm~s~k~la~~e~~~GyL~n~~t~e~y~fv~~~~ 271 (375)
T PF09746_consen 201 RHNIPVMVVTLDPAKDQCF---------GDRFSRLLLDEFLGYDDILMSSLKTLAENEDNKGYLRNVVTGEHYRFVSMWW 271 (375)
T ss_pred hcCCeEEEEEECCCCCCcc---------CchHHHHhhhhhcCccHHHHHHHHHHhcCCCCceeeeecccccceehhhhhh
Confidence 4567888888887 44454 11222211223347899888777653 3378999999888888665
Q ss_pred hhccCCCCCCCchHHHHHHHHHhhceeeChhhHHH------------------H----HHhHHHHHHHHHHHhhHHHHHH
Q 026676 153 LNRLCYGGSMSWNMTNVAALILFKGHWVNSTSIIR------------------S----FLPFTVVACLGLLIVGWPFLIG 210 (235)
Q Consensus 153 LN~m~Y~g~~~WNmv~la~l~~~~GryVs~~~~lk------------------t----~LPF~ii~~igvl~~gw~fl~~ 210 (235)
+.+ ++|=+--+..++|. .|..-+|| . ..|-+-++++.+.++|.-+..+
T Consensus 272 ~~r------~sy~~a~~~m~~ft----~svs~lLR~s~~qif~fiv~ll~~~~~~~~~~~p~a~llt~il~lvgm~~~m~ 341 (375)
T PF09746_consen 272 MAR------SSYLAAFFVMLIFT----FSVSMLLRYSHHQIFVFIVDLLQMLEHNLPIFFPAAPLLTVILALVGMEAIMS 341 (375)
T ss_pred hhc------cHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHhcCccccccceeeeeehhhHHHHHHHH
Confidence 443 34432222222221 22222222 2 2333334444566677665544
Q ss_pred ------HHHHHHHHHHHHh
Q 026676 211 ------LFSLSFLLLGWYL 223 (235)
Q Consensus 211 ------~~~f~~~l~gwf~ 223 (235)
..+|-++|+.|+.
T Consensus 342 eff~d~~~af~vil~vw~~ 360 (375)
T PF09746_consen 342 EFFNDTTTAFYVILIVWLA 360 (375)
T ss_pred HHhcchhHHHHHHHHHHHH
Confidence 3788899999974
No 18
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=38.03 E-value=1.2e+02 Score=25.31 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=20.1
Q ss_pred eeeChhhHHHHHHhHHHHHHHHHHHhhHHH
Q 026676 178 HWVNSTSIIRSFLPFTVVACLGLLIVGWPF 207 (235)
Q Consensus 178 ryVs~~~~lkt~LPF~ii~~igvl~~gw~f 207 (235)
+|-|.-.=+|||.-.++++++++.++|-.|
T Consensus 3 ~~~~KiN~~R~~al~lif~g~~vmy~gi~f 32 (114)
T PF11023_consen 3 KYSSKINKIRTFALSLIFIGMIVMYIGIFF 32 (114)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 455666667777777777777777766433
No 19
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=34.22 E-value=85 Score=26.72 Aligned_cols=30 Identities=33% Similarity=0.656 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 026676 194 VVACLGLLIVGWPFLIGLFSLSFLLLGWYL 223 (235)
Q Consensus 194 ii~~igvl~~gw~fl~~~~~f~~~l~gwf~ 223 (235)
.++.+|+.++-|.+++|......-++||..
T Consensus 99 al~~lGla~g~Wl~~iG~~~~i~~~~G~vf 128 (137)
T PF12270_consen 99 ALVFLGLAFGWWLILIGAVLLIVAVVGWVF 128 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355668888888889888888888888853
No 20
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=33.80 E-value=22 Score=25.44 Aligned_cols=19 Identities=11% Similarity=0.128 Sum_probs=16.4
Q ss_pred ccccccccCCcHHHHHHHh
Q 026676 135 HRTYNIFTCNSHSFVANCL 153 (235)
Q Consensus 135 ~r~hNLf~~NCHS~VA~~L 153 (235)
+..|=|.|-|||+|=..++
T Consensus 18 ~~r~aLIC~~C~~hNGla~ 36 (54)
T PF10058_consen 18 SNRYALICSKCFSHNGLAP 36 (54)
T ss_pred cCceeEECcccchhhcccc
Confidence 5778999999999987775
No 21
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=32.69 E-value=1.8e+02 Score=26.67 Aligned_cols=12 Identities=8% Similarity=0.357 Sum_probs=7.6
Q ss_pred CCCCchHHHHHH
Q 026676 160 GSMSWNMTNVAA 171 (235)
Q Consensus 160 g~~~WNmv~la~ 171 (235)
|+++|+..++.-
T Consensus 206 G~Sk~~~~~~~~ 217 (325)
T PRK10714 206 GDSKYSFMRLIN 217 (325)
T ss_pred CcCCCCHHHHHH
Confidence 667777766543
No 22
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=32.48 E-value=2.2e+02 Score=22.81 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=23.7
Q ss_pred hhHHHHHHhHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHhhhhh
Q 026676 183 TSIIRSFLPFTVVACLGLLIVGWPFL----IGLFSLSFLLLGWYLLGTY 227 (235)
Q Consensus 183 ~~~lkt~LPF~ii~~igvl~~gw~fl----~~~~~f~~~l~gwf~~~ty 227 (235)
.+++---+|.+.++ +|++++.+.+. ..+.++..+.++++++-.|
T Consensus 70 aa~l~Y~lPll~li-~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~ 117 (135)
T PF04246_consen 70 AAFLVYLLPLLALI-AGAVLGSYLGGSELWAILGGLLGLALGFLILRLF 117 (135)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556655544 66666665443 2335555556666655444
No 23
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=30.86 E-value=48 Score=25.34 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=29.6
Q ss_pred CcccHHHHHHHHHHHhcccccc--cccCCcHHHHHHHhhccCC
Q 026676 118 TAMTWDDALQLSNRQFEHRTYN--IFTCNSHSFVANCLNRLCY 158 (235)
Q Consensus 118 ~~~~WD~Av~~a~~~f~~r~hN--Lf~~NCHS~VA~~LN~m~Y 158 (235)
++++|++|++.|.++++.+.-. +=..+=+.|....|..++|
T Consensus 33 ~~eew~~a~~~A~~~~~~~ta~YLl~~p~ladyLe~GL~~lG~ 75 (75)
T PF12616_consen 33 EAEEWEEAVAEARERASARTADYLLGTPMLADYLEEGLEALGY 75 (75)
T ss_pred CHHHHHHHHHHHHHhccchHHHHHHcCCcHHHHHHHHHHHcCC
Confidence 5679999999999999875433 3455556677777766654
No 24
>PF13387 DUF4105: Domain of unknown function (DUF4105)
Probab=27.93 E-value=38 Score=28.50 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcccccccccCCcHHHHHHHhhccCCCC
Q 026676 122 WDDALQLSNRQFEHRTYNIFTCNSHSFVANCLNRLCYGG 160 (235)
Q Consensus 122 WD~Av~~a~~~f~~r~hNLf~~NCHS~VA~~LN~m~Y~g 160 (235)
.+...+.+.++-+...||++.+||=..+...||... ++
T Consensus 114 ~~~l~e~~~~~~~~~~Y~f~~~NCat~i~~~l~~~~-~~ 151 (176)
T PF13387_consen 114 FRHLWENANPENRPYRYNFFTDNCATRIRDLLDKAR-PG 151 (176)
T ss_pred HHHHHHhccccccceeehhhhcchHHHHHHHHHHHc-CC
Confidence 444445553333568899999999999999999543 44
No 25
>PF05708 DUF830: Orthopoxvirus protein of unknown function (DUF830); PDB: 2IF6_B 3KW0_C.
Probab=27.60 E-value=1.2e+02 Score=24.16 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=44.3
Q ss_pred ccceeeeecCCc----eEEeC---CCCeeeccCceee-cceeeeeecCCCcccCCCCCCCCCccCCccccCCCCcccHHH
Q 026676 53 FIGHVGICREDG----VSLDF---SGSNLVNVDEFAV-GAVARYLQLDRKQCCFPPNLSGHTCKQGYQHSEFGTAMTWDD 124 (235)
Q Consensus 53 fIGH~GIc~S~G----vI~DF---aGpy~V~~D~maF-G~ptrY~qLd~~~~c~p~~~~~~~~~~~~~~~~~g~~~~WD~ 124 (235)
-.+|+||.-.++ .|.+. .|......+++.- ....+-++++.. .+.+.=.+
T Consensus 27 ~~~HvgI~~~~~~~~~~viea~~~~Gv~~~~l~~~~~~~~~~~V~r~~~~----------------------~~~~~~~~ 84 (158)
T PF05708_consen 27 PYSHVGIVIGDEGQEPYVIEATPGDGVRLEPLSDFLKRNEKIAVYRLKDP----------------------LSEEQRQK 84 (158)
T ss_dssp S--EEEEEEEETTE-EEEEEEETTTCEEEEECHHHHHCCCEEEEEEECCG----------------------TTCHHHHH
T ss_pred CCCEEEEEEecCCCceEEEEeccCCCeEEeeHHHHhcCCceEEEEEECCC----------------------CCHHHHHH
Confidence 479999998887 45555 5555555555544 222222333322 01123345
Q ss_pred HHHHHHHHhcccccccc------cCCcHHHHHHHhhccCC
Q 026676 125 ALQLSNRQFEHRTYNIF------TCNSHSFVANCLNRLCY 158 (235)
Q Consensus 125 Av~~a~~~f~~r~hNLf------~~NCHS~VA~~LN~m~Y 158 (235)
|++.|. ++-.+.|++. .=.|-.+||.|++.++-
T Consensus 85 ~~~~a~-~~~g~~Y~~~~~~~~~~~yCSelV~~~y~~~gi 123 (158)
T PF05708_consen 85 AAEFAK-SYIGKPYDFNFSLDDDRFYCSELVAEAYKAAGI 123 (158)
T ss_dssp HHHHHH-CCTTS-B-CC-HCCSSSB-HHHHHHHHHHCCT-
T ss_pred HHHHHH-HHcCCCccccccCCCCCEEcHHHHHHHHHHhCC
Confidence 555554 4455677765 33699999999977664
No 26
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=26.23 E-value=94 Score=27.66 Aligned_cols=60 Identities=23% Similarity=0.582 Sum_probs=34.0
Q ss_pred CchHHHHHHHHHhhceeeC--hhhHHHHHHhHHH-HHHHHHHHhhHHHHHH-HHHHHHHHHHHHhh
Q 026676 163 SWNMTNVAALILFKGHWVN--STSIIRSFLPFTV-VACLGLLIVGWPFLIG-LFSLSFLLLGWYLL 224 (235)
Q Consensus 163 ~WNmv~la~l~~~~GryVs--~~~~lkt~LPF~i-i~~igvl~~gw~fl~~-~~~f~~~l~gwf~~ 224 (235)
.|-.=-+++++++-|-..- .-..+..|+|++- ++.+++.++. |+++ .+++....++|+..
T Consensus 183 tW~lR~~G~llmf~G~~~~~~~l~~l~~~~P~lg~l~~~~~~~~~--~~~s~~lsl~~Ia~aW~~y 246 (248)
T PF07787_consen 183 TWILRFIGWLLMFIGFFLLFSPLYTLVDWIPLLGNLVGFGLFLVA--FIISFSLSLLTIALAWLFY 246 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeechhhhHHHHHH--HHHHHHHHHHHHHHhheee
Confidence 4544455566666563332 3445567788766 5555665555 3332 35666677788753
No 27
>PF04217 DUF412: Protein of unknown function, DUF412; InterPro: IPR007334 This family consists of bacterial uncharacterised proteins.
Probab=25.93 E-value=1.2e+02 Score=26.01 Aligned_cols=63 Identities=32% Similarity=0.450 Sum_probs=47.8
Q ss_pred CchHHHHHHHHHhhceeeChhhHHHHHHhHHHHHHHH--HHHhhHHHHH-----HHHHHHHHHHHHHhhh
Q 026676 163 SWNMTNVAALILFKGHWVNSTSIIRSFLPFTVVACLG--LLIVGWPFLI-----GLFSLSFLLLGWYLLG 225 (235)
Q Consensus 163 ~WNmv~la~l~~~~GryVs~~~~lkt~LPF~ii~~ig--vl~~gw~fl~-----~~~~f~~~l~gwf~~~ 225 (235)
.|-|.+-...+|-..|-+-.+.|-..+.|++.++++. +.+.|+.++- ++++.|+.+=|+.-+|
T Consensus 15 ~WP~~k~L~~~FPE~RvIkaTrfa~k~MP~lAv~s~~~Q~~~~~~~~lp~ai~~aLFalSLPlQGl~WLG 84 (143)
T PF04217_consen 15 TWPMEKELAPIFPENRVIKATRFAIKFMPALAVFSLLWQIAFNGGQALPQAIATALFALSLPLQGLYWLG 84 (143)
T ss_pred HCCCcHHHHccCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 5889999999999999999999999999998888774 3445666553 4556666666655544
No 28
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=25.86 E-value=55 Score=25.21 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=19.8
Q ss_pred CCCcccHHHHHHHHHHHhccccccc
Q 026676 116 FGTAMTWDDALQLSNRQFEHRTYNI 140 (235)
Q Consensus 116 ~g~~~~WD~Av~~a~~~f~~r~hNL 140 (235)
+...++||+|++.|.++=++-++||
T Consensus 13 GtSp~S~d~Ai~~Ai~RA~~t~~~l 37 (71)
T COG3360 13 GTSPTSIDAAIANAIARAADTLDNL 37 (71)
T ss_pred ecCCccHHHHHHHHHHHHHhhhhcc
Confidence 3455789999999998887777776
No 29
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=25.51 E-value=21 Score=32.80 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=20.6
Q ss_pred HHHHHHHHHhccccc--cc-ccCCcHHHHH
Q 026676 124 DALQLSNRQFEHRTY--NI-FTCNSHSFVA 150 (235)
Q Consensus 124 ~Av~~a~~~f~~r~h--NL-f~~NCHS~VA 150 (235)
+||.+ .++|=+-+| || -|++||+-|-
T Consensus 164 ralaE-Le~YL~s~y~dnlk~Cn~Ch~LvI 192 (235)
T KOG4718|consen 164 RALAE-LEFYLSSNYADNLKNCNLCHCLVI 192 (235)
T ss_pred HHHHH-HHHHHHhhhHHHHHHHhHhHHHhh
Confidence 56665 457888899 99 8999999874
No 30
>TIGR01592 holin_SPP1 holin, SPP1 family. This model represents one of more than 30 families of phage proteins, all lacking detectable homology with each other, known or believed to act as holins. Holins act in cell lysis by bacteriophage. Members of this family are found in phage PBSX and phage SPP1, among others.
Probab=24.60 E-value=1.3e+02 Score=23.23 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=24.9
Q ss_pred ChhhHHHHHHhHHHHHHHHHHHhhHHHH
Q 026676 181 NSTSIIRSFLPFTVVACLGLLIVGWPFL 208 (235)
Q Consensus 181 s~~~~lkt~LPF~ii~~igvl~~gw~fl 208 (235)
|.+.++|+.+.++.++--++.+.|+..+
T Consensus 2 d~gTiiRti~l~lAlvNq~L~~~G~~pi 29 (75)
T TIGR01592 2 DAGTIVRTILLIIALVNQFLAMKGISPI 29 (75)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 6688999999999999999999999766
No 31
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=24.45 E-value=1.8e+02 Score=25.50 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=12.9
Q ss_pred hHHHHHHhHHHHHHHHHHH
Q 026676 184 SIIRSFLPFTVVACLGLLI 202 (235)
Q Consensus 184 ~~lkt~LPF~ii~~igvl~ 202 (235)
++---++|+++++.++.++
T Consensus 76 ~i~e~fmP~alv~lv~~~v 94 (170)
T PF11241_consen 76 NIGEFFMPVALVLLVLSFV 94 (170)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4455568888877766666
No 32
>KOG4623 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.97 E-value=2.7e+02 Score=28.97 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=44.9
Q ss_pred CcccHHHHHHHHHHHhcc---cccccccCCcHHHHHHHhhccC-----------------CCCCCCchHHHHHHHHHhhc
Q 026676 118 TAMTWDDALQLSNRQFEH---RTYNIFTCNSHSFVANCLNRLC-----------------YGGSMSWNMTNVAALILFKG 177 (235)
Q Consensus 118 ~~~~WD~Av~~a~~~f~~---r~hNLf~~NCHS~VA~~LN~m~-----------------Y~g~~~WNmv~la~l~~~~G 177 (235)
+-..||+++. +|++ +||- .|.-|.-+|-..|.+-+ |+-+ .-|--.+..+++.++
T Consensus 125 de~rydeeLe----vYR~~LE~mf~-LCs~C~~~V~~~L~e~k~~~~~k~l~Y~lK~~~~~K~p-H~n~~alr~l~~~~q 198 (611)
T KOG4623|consen 125 DEQRYDEELE----VYRKSLEEMFP-LCSECYDSVQDQLDENKYEAKNKVLGYWLKEQLNYKVP-HHNPKALRVLWLLRQ 198 (611)
T ss_pred chhhHHHHHH----HHHHHHHHHcc-cchHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhcCc-cccHHHHHHHHHHhh
Confidence 3457998875 5775 6777 78999999996665433 6665 778888999999999
Q ss_pred eeeCh
Q 026676 178 HWVNS 182 (235)
Q Consensus 178 ryVs~ 182 (235)
++-++
T Consensus 199 ~~rrf 203 (611)
T KOG4623|consen 199 FGRRF 203 (611)
T ss_pred hhhhh
Confidence 98774
No 33
>COG4420 Predicted membrane protein [Function unknown]
Probab=23.16 E-value=83 Score=28.29 Aligned_cols=11 Identities=27% Similarity=0.211 Sum_probs=4.5
Q ss_pred eChhhHHHHHH
Q 026676 180 VNSTSIIRSFL 190 (235)
Q Consensus 180 Vs~~~~lkt~L 190 (235)
.+.++|+-++.
T Consensus 55 ~Gsw~fil~~~ 65 (191)
T COG4420 55 GGSWAFILTFT 65 (191)
T ss_pred cCChHHHHHHH
Confidence 33444444443
No 34
>PRK14747 cytochrome b6-f complex subunit PetN; Provisional
Probab=23.01 E-value=12 Score=24.33 Aligned_cols=21 Identities=33% Similarity=0.825 Sum_probs=17.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHH
Q 026676 201 LIVGWPFLIGLFSLSFLLLGW 221 (235)
Q Consensus 201 l~~gw~fl~~~~~f~~~l~gw 221 (235)
+-.||..|...+.|++-|+.|
T Consensus 4 vsl~Waalm~~FtfSlslVVW 24 (29)
T PRK14747 4 LTLGWVSVLVLFTWSIAMVVW 24 (29)
T ss_pred ehhHHHHHHHHHhheeeEEEE
Confidence 446899999999998877766
No 35
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=22.86 E-value=1.2e+02 Score=22.14 Aligned_cols=19 Identities=21% Similarity=0.611 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 026676 210 GLFSLSFLLLGWYLLGTYC 228 (235)
Q Consensus 210 ~~~~f~~~l~gwf~~~ty~ 228 (235)
+....+++..|||.+.|-.
T Consensus 26 ~F~~~t~~VFGwFtimTii 44 (52)
T PF10958_consen 26 GFALVTVAVFGWFTIMTII 44 (52)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3355566788999988753
No 36
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=22.57 E-value=91 Score=30.91 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=18.6
Q ss_pred cHHHHHHHHHHHhcccccccccCCcHH---HHHHHh
Q 026676 121 TWDDALQLSNRQFEHRTYNIFTCNSHS---FVANCL 153 (235)
Q Consensus 121 ~WD~Av~~a~~~f~~r~hNLf~~NCHS---~VA~~L 153 (235)
=|+.-.+- ++.=.+..|=+=-||||| |||.-|
T Consensus 378 LW~~M~~Y-t~~~A~iF~G~RiDNCHSTPlhVaeyl 412 (423)
T PF14701_consen 378 LWKHMKEY-TELMAKIFHGFRIDNCHSTPLHVAEYL 412 (423)
T ss_pred HHHHHHHH-HHHHHHhcCeeeeecCCCCcHHHHHHH
Confidence 48654322 222233445556799999 777654
No 37
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=20.86 E-value=2.3e+02 Score=20.50 Aligned_cols=39 Identities=21% Similarity=0.398 Sum_probs=27.6
Q ss_pred HHHHHHHhhceeeChhhHHHHHHhH-------HHHHHHHHHHhhHH
Q 026676 168 NVAALILFKGHWVNSTSIIRSFLPF-------TVVACLGLLIVGWP 206 (235)
Q Consensus 168 ~la~l~~~~GryVs~~~~lkt~LPF-------~ii~~igvl~~gw~ 206 (235)
....+++..||--...++++..+.. -+.+.+|++.+++.
T Consensus 15 a~~~ll~~~Gri~GiSGil~~~~~~~~~~~~W~~~fl~Gl~~g~~l 60 (62)
T PF14241_consen 15 AASLLLLLNGRIAGISGILSGLLSPNKPDRDWRLAFLAGLILGGFL 60 (62)
T ss_pred HHHHHHHHcCcceehHHHHHHHhCCCCCCccHHHHHHHHHHHHHHH
Confidence 4567788899999999999887743 44555566655543
No 38
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=20.42 E-value=1.2e+02 Score=24.79 Aligned_cols=17 Identities=29% Similarity=0.641 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhhhhhhcC
Q 026676 212 FSLSFLLLGWYLLGTYCVK 230 (235)
Q Consensus 212 ~~f~~~l~gwf~~~ty~~k 230 (235)
+.+.+.++||- +||.+|
T Consensus 40 ~~lv~glvgW~--~sYlfR 56 (104)
T PF11460_consen 40 ALLVLGLVGWV--SSYLFR 56 (104)
T ss_pred HHHHHHHHHHH--hHHHhh
Confidence 45566678995 566554
No 39
>PF14207 DpnD-PcfM: DpnD/PcfM-like protein
Probab=20.22 E-value=85 Score=22.15 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=19.8
Q ss_pred CcccHHHHHHHHHHHhccccccc
Q 026676 118 TAMTWDDALQLSNRQFEHRTYNI 140 (235)
Q Consensus 118 ~~~~WD~Av~~a~~~f~~r~hNL 140 (235)
.|++.++|++++.+.|++--+.|
T Consensus 17 eA~s~eeA~~~v~~~y~~~eivL 39 (48)
T PF14207_consen 17 EAESEEEAIEKVRDAYRNEEIVL 39 (48)
T ss_pred EeCCHHHHHHHHHHHHhCCCEEc
Confidence 46789999999999999876766
Done!