Query 026676
Match_columns 235
No_of_seqs 114 out of 141
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 19:22:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lkt_A Retinoic acid receptor 95.9 0.0022 7.7E-08 49.9 1.4 33 121-153 88-121 (125)
2 4dpz_X HRAS-like suppressor 2; 95.8 0.0063 2.2E-07 49.6 3.6 35 121-155 88-123 (137)
3 4dot_A Group XVI phospholipase 95.2 0.011 3.6E-07 48.5 3.1 34 121-154 88-122 (140)
4 2wp7_A PPPDE peptidase domain- 87.9 0.33 1.1E-05 40.8 3.2 47 118-164 80-127 (168)
5 1q90_N Cytochrome B6F complex 60.7 11 0.00037 23.9 3.6 23 200-222 5-27 (31)
6 2cc6_A VNG1446H, dodecin; flav 51.6 6.3 0.00021 28.7 1.6 23 118-140 12-34 (68)
7 2ux9_A Dodecin; flavoprotein; 49.6 7 0.00024 28.5 1.6 23 118-140 14-36 (69)
8 3onr_A Protein transport prote 48.7 7.5 0.00026 28.6 1.7 23 118-140 14-36 (72)
9 2yiz_A Dodecin; flavoprotein, 48.4 7.5 0.00026 28.4 1.6 23 118-140 14-36 (69)
10 2vxa_A Dodecin; flavoprotein, 47.5 7.9 0.00027 28.5 1.6 23 118-140 15-37 (72)
11 1vf5_H Protein PET N; photosyn 45.6 12 0.00041 23.4 2.0 22 201-222 4-25 (29)
12 1zrt_D Cytochrome C1; cytochro 26.5 23 0.0008 31.5 1.5 41 109-156 7-48 (258)
No 1
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=95.92 E-value=0.0022 Score=49.92 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHhcc-cccccccCCcHHHHHHHh
Q 026676 121 TWDDALQLSNRQFEH-RTYNIFTCNSHSFVANCL 153 (235)
Q Consensus 121 ~WD~Av~~a~~~f~~-r~hNLf~~NCHS~VA~~L 153 (235)
.=|+.|++|.+.-.+ ..|||+.+||++||..|.
T Consensus 88 ~~~~iv~rA~~~lg~~~~Y~l~~nNCEHFa~~cr 121 (125)
T 2lkt_A 88 PVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQLR 121 (125)
T ss_dssp CHHHHHHHHHHHTTCEECSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCcCCCccCHHHHHhhhh
Confidence 347899999988875 479999999999997764
No 2
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=95.78 E-value=0.0063 Score=49.62 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHhcc-cccccccCCcHHHHHHHhhc
Q 026676 121 TWDDALQLSNRQFEH-RTYNIFTCNSHSFVANCLNR 155 (235)
Q Consensus 121 ~WD~Av~~a~~~f~~-r~hNLf~~NCHS~VA~~LN~ 155 (235)
.=|+.+++|.+.-.+ +.|||+.+||++||..|+.-
T Consensus 88 ~~~~iv~rA~~~lG~~~~Y~ll~nNCEHFvt~cryG 123 (137)
T 4dpz_X 88 PSNKIVKRAEELVGQELPYSLTSDNCEHFVNHLRYG 123 (137)
T ss_dssp CHHHHHHHHHHHTTCEEC-----CHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHcCCCcccCcCccChHHHHHHHhcC
Confidence 567999999888876 69999999999999999874
No 3
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=95.24 E-value=0.011 Score=48.52 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHhcc-cccccccCCcHHHHHHHhh
Q 026676 121 TWDDALQLSNRQFEH-RTYNIFTCNSHSFVANCLN 154 (235)
Q Consensus 121 ~WD~Av~~a~~~f~~-r~hNLf~~NCHS~VA~~LN 154 (235)
.=|+.+++|.+.-.+ +.|||+.+||++||..|..
T Consensus 88 ~~~~iv~rA~~~lG~e~~Y~ll~nNCEHFvt~cr~ 122 (140)
T 4dot_A 88 PCSKIIQRAEELVGQEVLYKLTSENCEHFVNELRY 122 (140)
T ss_dssp CHHHHHHHHHHTTTCBCSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCcccccccccChHHHHHHHhc
Confidence 457899999887775 7999999999999999876
No 4
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=87.91 E-value=0.33 Score=40.75 Aligned_cols=47 Identities=21% Similarity=0.264 Sum_probs=38.4
Q ss_pred CcccHHHHHHHHHHH-hcccccccccCCcHHHHHHHhhccCCCCCCCc
Q 026676 118 TAMTWDDALQLSNRQ-FEHRTYNIFTCNSHSFVANCLNRLCYGGSMSW 164 (235)
Q Consensus 118 ~~~~WD~Av~~a~~~-f~~r~hNLf~~NCHS~VA~~LN~m~Y~g~~~W 164 (235)
+.++-++.|++-.++ |.-..|||+..||.+|....-..|.=++--+|
T Consensus 80 ~~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~w 127 (168)
T 2wp7_A 80 TEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSY 127 (168)
T ss_dssp CHHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSCCCCHH
T ss_pred CHHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCCCCcHH
Confidence 445788899998998 99999999999999999988877764444444
No 5
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=60.72 E-value=11 Score=23.92 Aligned_cols=23 Identities=30% Similarity=0.691 Sum_probs=19.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q 026676 200 LLIVGWPFLIGLFSLSFLLLGWY 222 (235)
Q Consensus 200 vl~~gw~fl~~~~~f~~~l~gwf 222 (235)
++-.||..|...+.|++-|+.|=
T Consensus 5 ivsl~WaalmvvfTfSlslVVWG 27 (31)
T 1q90_N 5 IVQIGWAATCVMFSFSLSLVVWG 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHhheeeEEEEEe
Confidence 45679999999999999999983
No 6
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=51.64 E-value=6.3 Score=28.74 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=18.8
Q ss_pred CcccHHHHHHHHHHHhccccccc
Q 026676 118 TAMTWDDALQLSNRQFEHRTYNI 140 (235)
Q Consensus 118 ~~~~WD~Av~~a~~~f~~r~hNL 140 (235)
..++||||++.|.++=.+-.+|+
T Consensus 12 S~~S~edAi~nAi~~AskTl~ni 34 (68)
T 2cc6_A 12 SEESFTAAADDAIDRAEDTLDNV 34 (68)
T ss_dssp ESSCHHHHHHHHHHHHHHHCSCE
T ss_pred CCCCHHHHHHHHHHHHHhcccCC
Confidence 44689999999999877777775
No 7
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=49.65 E-value=7 Score=28.55 Aligned_cols=23 Identities=9% Similarity=0.078 Sum_probs=18.7
Q ss_pred CcccHHHHHHHHHHHhccccccc
Q 026676 118 TAMTWDDALQLSNRQFEHRTYNI 140 (235)
Q Consensus 118 ~~~~WD~Av~~a~~~f~~r~hNL 140 (235)
..++||+|++.|.++=.+-.+|+
T Consensus 14 S~~S~edAi~nAi~~AskTl~ni 36 (69)
T 2ux9_A 14 SEEGLEAAIQAALARARKTLRHL 36 (69)
T ss_dssp ESSCHHHHHHHHHHHHHHHCCCE
T ss_pred CCCCHHHHHHHHHHHHHhcccCC
Confidence 44689999999999877777775
No 8
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=48.75 E-value=7.5 Score=28.63 Aligned_cols=23 Identities=13% Similarity=0.325 Sum_probs=18.5
Q ss_pred CcccHHHHHHHHHHHhccccccc
Q 026676 118 TAMTWDDALQLSNRQFEHRTYNI 140 (235)
Q Consensus 118 ~~~~WD~Av~~a~~~f~~r~hNL 140 (235)
..++||||++.|.++=.+-.+|+
T Consensus 14 S~~S~edAi~nAi~~AskTl~ni 36 (72)
T 3onr_A 14 SPTSWEQAAAEAVQRARDSVDDI 36 (72)
T ss_dssp ESSCHHHHHHHHHHHHHHHCSCC
T ss_pred CCCCHHHHHHHHHHHHHhcccCC
Confidence 34689999999998877766665
No 9
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=48.37 E-value=7.5 Score=28.40 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=18.8
Q ss_pred CcccHHHHHHHHHHHhccccccc
Q 026676 118 TAMTWDDALQLSNRQFEHRTYNI 140 (235)
Q Consensus 118 ~~~~WD~Av~~a~~~f~~r~hNL 140 (235)
..++||+|++.|.++=.+-.+|+
T Consensus 14 S~~S~edAi~nAi~~AskTl~ni 36 (69)
T 2yiz_A 14 SPDGVDAAIQGGLARAAQTMRAL 36 (69)
T ss_dssp ETTCHHHHHHHHHHHHHHHCCCE
T ss_pred CCCCHHHHHHHHHHHHHhcccCC
Confidence 44689999999999877777775
No 10
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=47.54 E-value=7.9 Score=28.49 Aligned_cols=23 Identities=4% Similarity=0.020 Sum_probs=18.7
Q ss_pred CcccHHHHHHHHHHHhccccccc
Q 026676 118 TAMTWDDALQLSNRQFEHRTYNI 140 (235)
Q Consensus 118 ~~~~WD~Av~~a~~~f~~r~hNL 140 (235)
..++||+|++.|.++=.+-.+|+
T Consensus 15 S~~S~edAi~nAi~~AskTl~ni 37 (72)
T 2vxa_A 15 SPNGIEEAVNNAIARAGETLRHL 37 (72)
T ss_dssp ESSCHHHHHHHHHHHHHHHCCCE
T ss_pred CCCCHHHHHHHHHHHHHhhccCC
Confidence 44689999999999877777775
No 11
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=45.56 E-value=12 Score=23.37 Aligned_cols=22 Identities=27% Similarity=0.670 Sum_probs=19.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH
Q 026676 201 LIVGWPFLIGLFSLSFLLLGWY 222 (235)
Q Consensus 201 l~~gw~fl~~~~~f~~~l~gwf 222 (235)
+-.||..+...+.|++-|+.|=
T Consensus 4 vsl~WaalmvvftfSlslVVWG 25 (29)
T 1vf5_H 4 DVLGWVALLVVFTWSIAMVVWG 25 (29)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhheeeeEEEEe
Confidence 3469999999999999999983
No 12
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=26.54 E-value=23 Score=31.51 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=25.5
Q ss_pred CCccccCCCCcccHHH-HHHHHHHHhcccccccccCCcHHHHHHHhhcc
Q 026676 109 QGYQHSEFGTAMTWDD-ALQLSNRQFEHRTYNIFTCNSHSFVANCLNRL 156 (235)
Q Consensus 109 ~~~~~~~~g~~~~WD~-Av~~a~~~f~~r~hNLf~~NCHS~VA~~LN~m 156 (235)
..|.+. |--.++|. +||++-+.|++ -|-+|||---...++|
T Consensus 7 ~~wsf~--G~~~~~D~asLqRG~qvy~e-----vCa~CHsl~~v~yr~L 48 (258)
T 1zrt_D 7 HAFSFE--GIFGKYDQAQLRRGFQVYNE-----VCSACHGMKFVPIRTL 48 (258)
T ss_dssp CCCSSS--SSSCCCCHHHHHHHHHHHHH-----TTTTTCCCTTCBGGGS
T ss_pred CCCCCC--CCCCCcCHHHHHHHHHHHHH-----HHhhcCCchhhhHHHH
Confidence 344443 33345555 59999999987 6999999433333333
Done!