Query 026676
Match_columns 235
No_of_seqs 114 out of 141
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 19:22:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026676.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026676hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cc6a1 d.230.2.1 (A:2-65) Fla 56.1 2.3 0.00016 29.0 1.6 23 118-140 11-33 (64)
2 d2ux9a1 d.230.2.1 (A:2-67) Unc 55.3 2.4 0.00017 29.1 1.6 23 118-140 13-35 (66)
3 d1q90n_ f.23.27.1 (N:) PetN su 51.6 9.2 0.00067 22.5 3.6 21 202-222 7-27 (31)
4 d1jb0i_ f.23.17.1 (I:) Subunit 44.6 1.2 8.8E-05 27.8 -1.2 15 40-54 11-25 (38)
5 d1h32a2 a.3.1.8 (A:151-261) Di 19.0 17 0.0013 25.7 1.1 24 124-147 7-32 (111)
6 d2jnea1 g.41.18.1 (A:1-71) Hyp 16.3 15 0.0011 25.4 0.1 10 138-147 50-59 (71)
7 d2e74h1 f.23.27.1 (H:3-29) Pet 15.1 1E+02 0.0073 17.2 3.6 20 202-221 3-22 (27)
8 d2daqa1 b.34.9.2 (A:8-104) His 14.4 81 0.0059 21.0 3.8 18 118-135 77-94 (97)
9 d1iqca2 a.3.1.5 (A:151-308) Di 12.0 22 0.0016 26.7 -0.0 24 120-147 15-38 (158)
10 d1nmla2 a.3.1.5 (A:167-326) Di 10.5 30 0.0022 26.0 0.3 25 119-147 12-36 (160)
No 1
>d2cc6a1 d.230.2.1 (A:2-65) Flavin-binding protein dodecin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=56.15 E-value=2.3 Score=29.02 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=19.2
Q ss_pred CcccHHHHHHHHHHHhccccccc
Q 026676 118 TAMTWDDALQLSNRQFEHRTYNI 140 (235)
Q Consensus 118 ~~~~WD~Av~~a~~~f~~r~hNL 140 (235)
..++||||++.|.++=.+-.+|+
T Consensus 11 S~~S~edAi~~Ai~~AskTl~ni 33 (64)
T d2cc6a1 11 SEESFTAAADDAIDRAEDTLDNV 33 (64)
T ss_dssp ESSCHHHHHHHHHHHHHHHCSCE
T ss_pred CCCCHHHHHHHHHHHHhhCccCc
Confidence 34689999999999888877776
No 2
>d2ux9a1 d.230.2.1 (A:2-67) Uncharacterized protein TTHA1431 {Thermus thermophilus [TaxId: 274]}
Probab=55.30 E-value=2.4 Score=29.11 Aligned_cols=23 Identities=9% Similarity=0.078 Sum_probs=19.2
Q ss_pred CcccHHHHHHHHHHHhccccccc
Q 026676 118 TAMTWDDALQLSNRQFEHRTYNI 140 (235)
Q Consensus 118 ~~~~WD~Av~~a~~~f~~r~hNL 140 (235)
..++||+|++.|.++=.+-++|+
T Consensus 13 S~~S~edAi~~Ai~~AskTl~ni 35 (66)
T d2ux9a1 13 SEEGLEAAIQAALARARKTLRHL 35 (66)
T ss_dssp ESSCHHHHHHHHHHHHHHHCCCE
T ss_pred CCCCHHHHHHHHHHHhhhCccCc
Confidence 45689999999999888777776
No 3
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=51.57 E-value=9.2 Score=22.53 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=17.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q 026676 202 IVGWPFLIGLFSLSFLLLGWY 222 (235)
Q Consensus 202 ~~gw~fl~~~~~f~~~l~gwf 222 (235)
-++|.-+...++|++-|+.|=
T Consensus 7 ~~awaa~~atfsfslslvvwg 27 (31)
T d1q90n_ 7 QIGWAATCVMFSFSLSLVVWG 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred EhHHHHHHHhheeeEEEEEEe
Confidence 347888888899999999884
No 4
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=44.59 E-value=1.2 Score=27.78 Aligned_cols=15 Identities=47% Similarity=1.139 Sum_probs=12.7
Q ss_pred Ecccccchhhhcccc
Q 026676 40 VWTPLPVVSWLAPFI 54 (235)
Q Consensus 40 VWTPIPviSWl~PfI 54 (235)
-|.-||++.|++|-+
T Consensus 11 PwI~iPvv~wl~p~v 25 (38)
T d1jb0i_ 11 PWIFIPVVCWLMPTV 25 (38)
T ss_dssp HHHHHHHHHTHHHHH
T ss_pred chhHHHHHHHHHHHH
Confidence 378899999999964
No 5
>d1h32a2 a.3.1.8 (A:151-261) Di-heme cytochrome c SoxA {Rhodovulum sulfidophilum [TaxId: 35806]}
Probab=19.01 E-value=17 Score=25.75 Aligned_cols=24 Identities=8% Similarity=0.216 Sum_probs=20.1
Q ss_pred HHHHHHHHHhccc--ccccccCCcHH
Q 026676 124 DALQLSNRQFEHR--TYNIFTCNSHS 147 (235)
Q Consensus 124 ~Av~~a~~~f~~r--~hNLf~~NCHS 147 (235)
.+++++.+-|.+| .-|+-|.+||-
T Consensus 7 ~~~e~Ge~lf~~r~G~~~~sCasCH~ 32 (111)
T d1h32a2 7 STWEKGREIYYTRYGQLDLSCASCHE 32 (111)
T ss_dssp HHHHHHHHHHTCCBTTTTBCHHHHHT
T ss_pred HHHHHHHHHHhcccCCCCCChhhccc
Confidence 6788999999765 46889999994
No 6
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=16.25 E-value=15 Score=25.37 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=7.8
Q ss_pred cccccCCcHH
Q 026676 138 YNIFTCNSHS 147 (235)
Q Consensus 138 hNLf~~NCHS 147 (235)
=|.||+|||.
T Consensus 50 vdYFC~~cn~ 59 (71)
T d2jnea1 50 VDYFCQHGHG 59 (71)
T ss_dssp EEEEETTTTE
T ss_pred hhhhhccCCc
Confidence 4789999985
No 7
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=15.10 E-value=1e+02 Score=17.21 Aligned_cols=20 Identities=30% Similarity=0.870 Sum_probs=12.5
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 026676 202 IVGWPFLIGLFSLSFLLLGW 221 (235)
Q Consensus 202 ~~gw~fl~~~~~f~~~l~gw 221 (235)
..||.-|+..+-.+..++.|
T Consensus 3 ~lgwv~llvvftwsiamvvw 22 (27)
T d2e74h1 3 VLGWVALLVVFTWSIAMVVW 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHhhheeeeEEE
Confidence 44777666666666666666
No 8
>d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.44 E-value=81 Score=20.96 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.3
Q ss_pred CcccHHHHHHHHHHHhcc
Q 026676 118 TAMTWDDALQLSNRQFEH 135 (235)
Q Consensus 118 ~~~~WD~Av~~a~~~f~~ 135 (235)
....+-+||++|.+.|+.
T Consensus 77 ~~~~~~~Av~eA~~~~~~ 94 (97)
T d2daqa1 77 INKTFKKALEEAAKRFQE 94 (97)
T ss_dssp CCSHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 345899999999999986
No 9
>d1iqca2 a.3.1.5 (A:151-308) Di-heme cytochrome c peroxidase {Nitrosomonas europaea [TaxId: 915]}
Probab=11.99 E-value=22 Score=26.69 Aligned_cols=24 Identities=8% Similarity=0.075 Sum_probs=18.4
Q ss_pred ccHHHHHHHHHHHhcccccccccCCcHH
Q 026676 120 MTWDDALQLSNRQFEHRTYNIFTCNSHS 147 (235)
Q Consensus 120 ~~WD~Av~~a~~~f~~r~hNLf~~NCHS 147 (235)
...+.+..++.+.|..+ + |.+||+
T Consensus 15 ~als~~~~rG~~lF~~~--g--C~~CH~ 38 (158)
T d1iqca2 15 NALNQDELEGYNLFKGS--G--CVQCHN 38 (158)
T ss_dssp TSSCHHHHHHHHHHHHH--T--GGGTSC
T ss_pred ccCCHHHHHHHHHHccC--C--Cccccc
Confidence 34567788888999874 3 999995
No 10
>d1nmla2 a.3.1.5 (A:167-326) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]}
Probab=10.47 E-value=30 Score=25.99 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=18.5
Q ss_pred cccHHHHHHHHHHHhcccccccccCCcHH
Q 026676 119 AMTWDDALQLSNRQFEHRTYNIFTCNSHS 147 (235)
Q Consensus 119 ~~~WD~Av~~a~~~f~~r~hNLf~~NCHS 147 (235)
.....++.+++-+.|..+- |-+||+
T Consensus 12 ~~alt~~e~rG~~LF~~~g----C~~CH~ 36 (160)
T d1nmla2 12 TSALNESEKEGLALFMDRG----CTACHS 36 (160)
T ss_dssp GGGSCHHHHHHHHHHHHTT----GGGTSC
T ss_pred cccCCHHHHHHHHHHhccC----CCcccc
Confidence 3445677788889997652 999994
Done!