Query 026677
Match_columns 235
No_of_seqs 113 out of 337
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 19:24:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dgl_A Casein kinase II subuni 100.0 8.9E-96 3E-100 638.1 12.2 191 44-234 4-194 (215)
2 1qf8_A Casein kinase II; casei 100.0 2E-88 6.7E-93 580.1 10.2 178 44-221 4-181 (182)
3 4esj_A Type-2 restriction enzy 74.3 0.66 2.3E-05 41.2 0.1 60 146-212 34-105 (257)
4 2kxe_A DNA polymerase II small 70.0 2.2 7.4E-05 31.0 2.0 29 119-147 8-36 (75)
5 2con_A RUH-035 protein, NIN on 37.5 9.4 0.00032 28.1 0.7 13 170-182 26-38 (79)
6 2jmo_A Parkin; IBR, E3 ligase, 36.4 27 0.00091 24.9 3.0 36 148-186 27-70 (80)
7 3vk8_A Probable formamidopyrim 29.6 33 0.0011 30.4 3.1 37 144-184 251-289 (295)
8 2kep_A General secretion pathw 27.2 27 0.00092 26.8 1.8 26 114-139 20-45 (110)
9 3v2d_6 50S ribosomal protein L 23.5 35 0.0012 23.2 1.6 18 166-183 29-46 (54)
10 3r8s_1 50S ribosomal protein L 22.9 33 0.0011 23.0 1.3 18 166-183 26-43 (50)
11 3m7n_A Putative uncharacterize 22.7 43 0.0015 27.3 2.3 32 142-185 136-167 (179)
12 1f62_A Transcription factor WS 21.1 28 0.00095 22.4 0.7 8 174-181 41-48 (51)
13 2nn6_I 3'-5' exoribonuclease C 21.0 47 0.0016 27.9 2.3 41 126-184 155-195 (209)
14 2lbm_A Transcriptional regulat 20.6 12 0.00043 30.1 -1.4 33 148-181 80-115 (142)
15 1k3x_A Endonuclease VIII; hydr 20.5 43 0.0015 29.0 1.9 10 172-181 252-261 (262)
16 1mm2_A MI2-beta; PHD, zinc fin 20.4 66 0.0023 21.6 2.5 28 149-181 27-54 (61)
No 1
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=100.00 E-value=8.9e-96 Score=638.12 Aligned_cols=191 Identities=58% Similarity=1.132 Sum_probs=174.4
Q ss_pred CCCCChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhccc
Q 026677 44 GDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLI 123 (235)
Q Consensus 44 ~~~~sWI~wFcs~~gneff~eVdedyI~D~FNL~GL~~~v~~y~~aL~~ILd~~~~~~~~~~~~~~~~ie~~A~~LYGLI 123 (235)
+++.+||+|||+++||+||||||+|||+|+||||||+++||+|++||+||||.+++++...+.++.+.++++|++|||||
T Consensus 4 s~~~sWI~wFc~~~gneffceVd~dyI~D~FNL~GL~~~Vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~A~~LYGLI 83 (215)
T 4dgl_A 4 SEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLI 83 (215)
T ss_dssp ----CHHHHHHTSTTCTTCCCCCHHHHHSTTTTTTGGGTSSSHHHHHHHHTTC--------CTTHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHhCCCCCeEEEEeCHHHhcCcccccCchhccccHHHHHHHHcCCCCcchhcccchhHHHHHHHHHHHhhhh
Confidence 35679999999999999999999999999999999999999999999999999876554444456778999999999999
Q ss_pred cceeeeChHHHHHHHHhhhcCcccCCCCcCCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCch
Q 026677 124 HVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTF 203 (235)
Q Consensus 124 HARYIlT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~lLPiGlSd~pg~~~VKlyCP~C~DvY~P~s~~~~~iDGAyFGtsF 203 (235)
|||||+|++||++|++||++|+||+||||+|++|+|||+|+||+||+++||||||+|+|||+|+++++++||||||||||
T Consensus 84 HARYIlT~~Gl~~M~eKY~~g~FG~CPRv~C~~q~~LPvGlSD~pg~~~VKlyCP~C~DvY~P~s~r~~~iDGAyFGtsF 163 (215)
T 4dgl_A 84 HARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGF 163 (215)
T ss_dssp HHHHTTSHHHHHHHHHHHHTTTTCBCCBGGGTSCBCEEEESCSSTTSCBEEEECTTTCCEECCSSTTSTTSBGGGTTTTH
T ss_pred hHhheecHHHHHHHHHHHhcCCCCcCCccccCCCceeccccCCCCCccceeEeCCCcccccCCCcccccccccceecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred hhHHHHHhCCCCCCCCCCCcceeeeeeeecC
Q 026677 204 PHLFLMTYGHLKPQKATQSYVPRVFGFKLHK 234 (235)
Q Consensus 204 ph~fl~~yp~l~p~~~~~~y~PrIfGFki~~ 234 (235)
||||+|+||+++|+++.++|+|||||||||+
T Consensus 164 ph~f~~~~p~l~p~~~~~~yvPrifGFkih~ 194 (215)
T 4dgl_A 164 PHMLFMVHPEYRPKRPANQFVPRLYGFKIHP 194 (215)
T ss_dssp HHHHHHHCGGGCCCSCSCCCCCEETTEEECT
T ss_pred hHHHHHHcccccCCCCCCcccCeEeEEEecH
Confidence 9999999999999999999999999999996
No 2
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=100.00 E-value=2e-88 Score=580.06 Aligned_cols=178 Identities=58% Similarity=1.116 Sum_probs=161.8
Q ss_pred CCCCChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhccc
Q 026677 44 GDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLI 123 (235)
Q Consensus 44 ~~~~sWI~wFcs~~gneff~eVdedyI~D~FNL~GL~~~v~~y~~aL~~ILd~~~~~~~~~~~~~~~~ie~~A~~LYGLI 123 (235)
+++.+||+|||+++||+||||||+|||+|+||||||+++||+|++||+||||.+++++...++++.+.++++|++|||||
T Consensus 4 ~~~~sWI~wF~~~~gneffceVd~dyI~D~FNL~GL~~~vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~a~~LYGLI 83 (182)
T 1qf8_A 4 SEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLI 83 (182)
T ss_dssp ---CCHHHHHHHSTTCTTCCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CHHHHHHHHHHHHHHHHH
T ss_pred CccCcHHHHHhCCCCCeEEEEeCHHHhcCcchhhCccccccCHHHHHHHHhCCCCccccccchhhhHHHHHHHHHHhchh
Confidence 36678999999999999999999999999999999999999999999999999876554444456788999999999999
Q ss_pred cceeeeChHHHHHHHHhhhcCcccCCCCcCCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCch
Q 026677 124 HVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTF 203 (235)
Q Consensus 124 HARYIlT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~lLPiGlSd~pg~~~VKlyCP~C~DvY~P~s~~~~~iDGAyFGtsF 203 (235)
|||||+|++||++|++||++|+||+||||+|++|+|||+|+||+||+++||||||+|+|||+|++.++++||||||||||
T Consensus 84 HaRyIlT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~~LPvGlSd~pg~~~VKlyCP~C~DvY~p~s~~~~~iDGAyFGtsF 163 (182)
T 1qf8_A 84 HARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGF 163 (182)
T ss_dssp HHHHTTSHHHHHHHHHHHHTTTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECCSSGGGTTSBGGGTCSSH
T ss_pred hhhhcccHHHHHHHHHhhhcCcCCCCCccccCCCcccCCccCCCCCCCceEEECCCccceeCCCcccccccccceecCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999888789999999999
Q ss_pred hhHHHHHhCCCCCCCCCC
Q 026677 204 PHLFLMTYGHLKPQKATQ 221 (235)
Q Consensus 204 ph~fl~~yp~l~p~~~~~ 221 (235)
||||+|+||++.|+++.+
T Consensus 164 ph~f~~~~p~l~p~~~~~ 181 (182)
T 1qf8_A 164 PHMLFMVHPEYRPKRPAN 181 (182)
T ss_dssp HHHHHHHCGGGSCSCC--
T ss_pred HHHHHHHcccccCCCCCC
Confidence 999999999999987654
No 3
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=74.35 E-value=0.66 Score=41.18 Aligned_cols=60 Identities=30% Similarity=0.611 Sum_probs=36.3
Q ss_pred ccCCCCcCCCCCCccccccCCCCCCccce-eecCCCCccccCCCCC--CC--cccccccC-------CchhhHHHHHhC
Q 026677 146 FGRCPRVYCCGQPCLPVGQSDIPRSSTVK-IYCPKCEDIYYPRSKY--QG--NIDGAYFG-------TTFPHLFLMTYG 212 (235)
Q Consensus 146 FG~CPRv~C~~q~lLPiGlSd~pg~~~VK-lyCP~C~DvY~P~s~~--~~--~iDGAyFG-------tsFph~fl~~yp 212 (235)
-+.||+ |..-++-= -+...+|. .|||.|.+-|.-+|.. .+ ..||||-- .+=|.+|||+|.
T Consensus 34 n~yCPn--CG~~~l~~-----f~nN~PVaDF~C~~C~EeyELKSk~~~~~~~I~dGAY~Tmi~Ri~s~~NPnFffL~Y~ 105 (257)
T 4esj_A 34 QSYCPN--CGNNPLNH-----FENNRPVADFYCNHCSEEFELKSKKGNFSSTINDGAYATMMKRVQADNNPNFFFLTYT 105 (257)
T ss_dssp HCCCTT--TCCSSCEE-----C----CCCEEECTTTCCEEEEEEEESSCCSEEEEEEHHHHHHHHHTTCCCEEEEEEEC
T ss_pred CCcCCC--CCChhhhh-----ccCCCcccccccCCcchhheeccccCccCccccCchHHHHHHHHhccCCCCEEEEEec
Confidence 356885 44433322 23345565 8999999999877532 12 34999963 255677777775
No 4
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=70.03 E-value=2.2 Score=31.01 Aligned_cols=29 Identities=17% Similarity=0.445 Sum_probs=26.5
Q ss_pred HhccccceeeeChHHHHHHHHhhhcCccc
Q 026677 119 LYGLIHVRYILTSKGMAAMLEKYKNYDFG 147 (235)
Q Consensus 119 LYGLIHARYIlT~~Gl~~M~eKy~~g~FG 147 (235)
.=+|+-++|++||..--.+.+-|++|.|-
T Consensus 8 Vk~L~~n~YLiTPsAYyLL~~~ykkg~Fs 36 (75)
T 2kxe_A 8 VKGLMKNGYLITPSAYYLLVGHFNEGKFS 36 (75)
T ss_dssp HHHHHTTTCEECHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHCCceeCchHHHHHHHHhhccccc
Confidence 45789999999999999999999999985
No 5
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=37.48 E-value=9.4 Score=28.09 Aligned_cols=13 Identities=23% Similarity=0.876 Sum_probs=10.6
Q ss_pred CccceeecCCCCc
Q 026677 170 SSTVKIYCPKCED 182 (235)
Q Consensus 170 ~~~VKlyCP~C~D 182 (235)
..+-|.|||+|.-
T Consensus 26 ~~~~k~FCp~CGn 38 (79)
T 2con_A 26 SDMNRVFCGHCGN 38 (79)
T ss_dssp SCSSCCSCSSSCC
T ss_pred CCcccccccccCc
Confidence 4466999999986
No 6
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=36.38 E-value=27 Score=24.93 Aligned_cols=36 Identities=22% Similarity=0.456 Sum_probs=21.1
Q ss_pred CCCCcCCCCCCccccccCCCCCC--------ccceeecCCCCccccC
Q 026677 148 RCPRVYCCGQPCLPVGQSDIPRS--------STVKIYCPKCEDIYYP 186 (235)
Q Consensus 148 ~CPRv~C~~q~lLPiGlSd~pg~--------~~VKlyCP~C~DvY~P 186 (235)
-||+..|...-...- +.... .-=..||.+|+.-||.
T Consensus 27 ~CP~p~C~~~v~~~~---~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 27 LCPRPGCGAGLLPEP---DQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCCSSSCCCCCCCCS---CTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred ECCCCCCCcccEECC---CCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 499999987543321 11111 1124578888888876
No 7
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=29.58 E-value=33 Score=30.39 Aligned_cols=37 Identities=8% Similarity=0.193 Sum_probs=20.2
Q ss_pred CcccC--CCCcCCCCCCccccccCCCCCCccceeecCCCCccc
Q 026677 144 YDFGR--CPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIY 184 (235)
Q Consensus 144 g~FG~--CPRv~C~~q~lLPiGlSd~pg~~~VKlyCP~C~DvY 184 (235)
.+||+ || | |.++.=+-+-+..+.++---|||+|+..=
T Consensus 251 ~VYgR~g~P---C-G~~I~~~~~~~~~~~~R~t~~CP~CQ~~~ 289 (295)
T 3vk8_A 251 LVYRKKKDP---N-GNKVIADKIIGSGKNKRTTYWAPAIQKLE 289 (295)
T ss_dssp SSTTCSBCT---T-SCBCEEEECSCCTTCCCEEEECTTTCBCC
T ss_pred EEeCCCCCC---C-CCcEEEEEecCCCCCCCccEECCCCCCCc
Confidence 46775 55 5 55443221211122456678999998654
No 8
>2kep_A General secretion pathway protein G; methylation, transport, transport protein; NMR {Pseudomonas aeruginosa}
Probab=27.21 E-value=27 Score=26.76 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=23.1
Q ss_pred HHHHHHhccccceeeeChHHHHHHHH
Q 026677 114 SAAEMLYGLIHVRYILTSKGMAAMLE 139 (235)
Q Consensus 114 ~~A~~LYGLIHARYIlT~~Gl~~M~e 139 (235)
+.|..+|-|=|-||=.|.+||+++.+
T Consensus 20 ~~Al~~Y~lD~G~YPtt~qgL~aLv~ 45 (110)
T 2kep_A 20 AAALDMYKLDNFAYPSTQQGLEALVK 45 (110)
T ss_dssp HHHHHHHHHHTSSCCCTTHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHh
Confidence 34667999999999999999999987
No 9
>3v2d_6 50S ribosomal protein L33; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ...
Probab=23.52 E-value=35 Score=23.23 Aligned_cols=18 Identities=28% Similarity=0.804 Sum_probs=14.2
Q ss_pred CCCCCccceeecCCCCcc
Q 026677 166 DIPRSSTVKIYCPKCEDI 183 (235)
Q Consensus 166 d~pg~~~VKlyCP~C~Dv 183 (235)
..|..-.+|-|||.|+..
T Consensus 29 n~p~rLelkKycp~c~kH 46 (54)
T 3v2d_6 29 NTPNKLELRKYCPWCRKH 46 (54)
T ss_dssp TSCSCCEEEEEETTTTEE
T ss_pred CCCcccEEeeeCCCCCCE
Confidence 456777889999999753
No 10
>3r8s_1 50S ribosomal protein L33; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_1 3j19_1 2wwq_4 3oat_1* 3oas_1* 3ofd_1 3ofc_1 3ofr_1* 3ofz_1* 3og0_1 3ofq_1 3r8t_1 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 ...
Probab=22.89 E-value=33 Score=22.96 Aligned_cols=18 Identities=17% Similarity=0.253 Sum_probs=13.8
Q ss_pred CCCCCccceeecCCCCcc
Q 026677 166 DIPRSSTVKIYCPKCEDI 183 (235)
Q Consensus 166 d~pg~~~VKlyCP~C~Dv 183 (235)
..|..-.+|-|||.|+..
T Consensus 26 ~~~~rLelkKycp~~~kh 43 (50)
T 3r8s_1 26 TKPEKLELKKFDPVVRQH 43 (50)
T ss_dssp GCCSCCCEEEEETTTTEE
T ss_pred CCCccceEeeeCcCCCCE
Confidence 356667889999999753
No 11
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=22.75 E-value=43 Score=27.25 Aligned_cols=32 Identities=19% Similarity=0.458 Sum_probs=23.0
Q ss_pred hcCcccCCCCcCCCCCCccccccCCCCCCccceeecCCCCcccc
Q 026677 142 KNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYY 185 (235)
Q Consensus 142 ~~g~FG~CPRv~C~~q~lLPiGlSd~pg~~~VKlyCP~C~DvY~ 185 (235)
.-..+..|++ | |.++.|++ . .+.||.|.-+-.
T Consensus 136 lGvv~a~~~~--~-g~~m~~~~-~--------~~~cp~~g~~e~ 167 (179)
T 3m7n_A 136 MGVLRALCSN--C-KTEMVREG-D--------ILKCPECGRVEK 167 (179)
T ss_dssp CEEEECBCTT--T-CCBCEECS-S--------SEECSSSCCEEC
T ss_pred CCEEEecccc--c-CCceEECC-C--------EEECCCCCCEEE
Confidence 3445667874 4 56789977 2 799999987764
No 12
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=21.12 E-value=28 Score=22.38 Aligned_cols=8 Identities=38% Similarity=1.232 Sum_probs=4.1
Q ss_pred eeecCCCC
Q 026677 174 KIYCPKCE 181 (235)
Q Consensus 174 KlyCP~C~ 181 (235)
..|||.|.
T Consensus 41 ~W~C~~C~ 48 (51)
T 1f62_A 41 EWQCPACQ 48 (51)
T ss_dssp CCSCTTTS
T ss_pred cEECcCcc
Confidence 45555553
No 13
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=20.99 E-value=47 Score=27.86 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=28.1
Q ss_pred eeeeChHHHHHHHHhhhcCcccCCCCcCCCCCCccccccCCCCCCccceeecCCCCccc
Q 026677 126 RYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIY 184 (235)
Q Consensus 126 RYIlT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~lLPiGlSd~pg~~~VKlyCP~C~DvY 184 (235)
||.||-++ .-.-..+..|++ |.++.|++-. .|.||.|.-+-
T Consensus 155 ~i~LS~k~------~~lGVv~A~c~~----g~~m~~~~~~--------~m~cp~cg~~E 195 (209)
T 2nn6_I 155 NYLLTTAE------NELGVVVAHSES----GIQMVPISWC--------EMQCPKTHTKE 195 (209)
T ss_dssp EEEEECCS------SSCEECCCBCSS----SCBCEEEETT--------EEECTTTTCCB
T ss_pred eEEEEEec------CCCcEEEEEcCC----CCEEEEccCC--------EEECCCCCCEE
Confidence 56665332 333445557887 6789998854 79999999776
No 14
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=20.64 E-value=12 Score=30.14 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=23.5
Q ss_pred CCCCcCCCCCCcccccc---CCCCCCccceeecCCCC
Q 026677 148 RCPRVYCCGQPCLPVGQ---SDIPRSSTVKIYCPKCE 181 (235)
Q Consensus 148 ~CPRv~C~~q~lLPiGl---Sd~pg~~~VKlyCP~C~ 181 (235)
.|||++|......|+|. +++. ...-+..||.|.
T Consensus 80 ~Cpr~Fh~~Cl~p~l~~~~l~~i~-~p~~~W~C~~C~ 115 (142)
T 2lbm_A 80 FCHNAFCKKCILRNLGRKELSTIM-DENNQWYCYICH 115 (142)
T ss_dssp SSCCEEEHHHHHHHTCHHHHHHHH-TSTTCCCCTTTC
T ss_pred CCCCeeeHhhcCCCCChhhhhhcc-cCCCCCEeeccc
Confidence 79999999998888883 2210 012278899995
No 15
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=20.49 E-value=43 Score=29.02 Aligned_cols=10 Identities=30% Similarity=0.976 Sum_probs=7.6
Q ss_pred cceeecCCCC
Q 026677 172 TVKIYCPKCE 181 (235)
Q Consensus 172 ~VKlyCP~C~ 181 (235)
+---|||+|+
T Consensus 252 R~t~~CP~CQ 261 (262)
T 1k3x_A 252 RPFYWCPGCQ 261 (262)
T ss_dssp EEEEECTTTC
T ss_pred CCeEECCCCC
Confidence 4456999997
No 16
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=20.39 E-value=66 Score=21.63 Aligned_cols=28 Identities=32% Similarity=0.755 Sum_probs=15.4
Q ss_pred CCCcCCCCCCccccccCCCCCCccceeecCCCC
Q 026677 149 CPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCE 181 (235)
Q Consensus 149 CPRv~C~~q~lLPiGlSd~pg~~~VKlyCP~C~ 181 (235)
|||.+.-...-.| ++.+|. -+.|||.|.
T Consensus 27 C~~~fH~~Cl~pp--l~~~p~---g~W~C~~C~ 54 (61)
T 1mm2_A 27 CPSSYHIHCLNPP--LPEIPN---GEWLCPRCT 54 (61)
T ss_dssp SCCCBCSSSSSSC--CSSCCS---SCCCCTTTT
T ss_pred CCHHHcccccCCC--cCcCCC---CccCChhhc
Confidence 7776655433222 344443 268888884
Done!