BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026678
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SA98|ALKBH_ARATH Alpha-ketoglutarate-dependent dioxygenase alkB OS=Arabidopsis
thaliana GN=At1g11780 PE=2 SV=2
Length = 345
Score = 333 bits (855), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 162/221 (73%), Positives = 181/221 (81%), Gaps = 17/221 (7%)
Query: 1 MQEQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGASS 60
++EQ +WI+ESLTSFPQPPNRTNHNA YGPIDDLF++ KE KVL++++
Sbjct: 96 LKEQCKWIKESLTSFPQPPNRTNHNAIYGPIDDLFDSAKENKVLVQDD------------ 143
Query: 61 CTSNEDAHRWKFYEE-DIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPH 119
T+N +WKFYEE DI +CKSV A VLLRKLRW TLGLQFDWSKRNY+VSLPH
Sbjct: 144 LTNN----KWKFYEEVDIEKATRSSCKSVSASVLLRKLRWSTLGLQFDWSKRNYDVSLPH 199
Query: 120 KKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMS 179
IPDALCQLAK AA AMP GEEF+PE AIVNYFG+GDTLGGHLDDMEADWSKPIVSMS
Sbjct: 200 NNIPDALCQLAKTHAAIAMPDGEEFRPEGAIVNYFGIGDTLGGHLDDMEADWSKPIVSMS 259
Query: 180 LGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220
LGCKAIFLLGGKS++DPP AM+LRSGD VLMAGEARECFHG
Sbjct: 260 LGCKAIFLLGGKSKDDPPHAMYLRSGDVVLMAGEARECFHG 300
>sp|Q54N08|ALKB_DICDI Alpha-ketoglutarate-dependent dioxygenase alkB OS=Dictyostelium
discoideum GN=alkB PE=2 SV=1
Length = 393
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 122/222 (54%), Gaps = 26/222 (11%)
Query: 3 EQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGA-SSC 61
+Q +WI+ +L + PPN N F+GPI +L+ EK+++ EE S G D
Sbjct: 136 QQKKWIKHALEDYADPPNNNNITLFHGPIKNLWKN-GEKELINEELKSQGKHDDDEIEQP 194
Query: 62 TSNEDAHRWKFYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHKK 121
T D + E + T R LL KL W TLG Q+ W+ R Y+ +++
Sbjct: 195 TRPLDKNG-----EPLPTYRQ----------LLDKLAWSTLGYQYQWTPRLYSEEF-YEE 238
Query: 122 IPDALCQLAKRLAAPAMPIGEEFQP---EAAIVNYFGLGDTLGGHLDDMEADWSKPIVSM 178
PD L +L +++A I +F P EAA VN++ +GGHLDD E + KPI+S+
Sbjct: 239 FPDDLQELVQKIA-----IATKFDPYVAEAATVNFYSEDSIMGGHLDDAEQEMEKPIISI 293
Query: 179 SLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220
S G A+FL+G ++R+ P+ +F+RSGD V+M G +R C+HG
Sbjct: 294 SFGSTAVFLMGAETRDIAPVPLFIRSGDIVIMGGRSRYCYHG 335
>sp|P0CB42|ALKB1_MOUSE Alkylated DNA repair protein alkB homolog 1 OS=Mus musculus
GN=Alkbh1 PE=1 SV=1
Length = 389
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 97/193 (50%), Gaps = 29/193 (15%)
Query: 64 NEDAHRWK-----FYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLP 118
N D H K +E+ LR K + LL +LRW TLG ++W + Y+
Sbjct: 130 NLDKHMTKEETQGLWEQSKEVLRSKEVTKRRPRSLLERLRWVTLGYHYNWDSKKYSADH- 188
Query: 119 HKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSM 178
+ P L L++++A G FQ EA I+NY+ L TLG H+D E D SKP++S
Sbjct: 189 YTPFPSDLAFLSEQVATACGFQG--FQAEAGILNYYRLDSTLGIHVDRSELDHSKPLLSF 246
Query: 179 SLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFH----------GEC------ 222
S G AIFLLGG R++ P AMF+ SGD ++M+G +R H GEC
Sbjct: 247 SFGQSAIFLLGGLKRDEAPTAMFMHSGDIMVMSGFSRLLNHAVPRVLPHPDGECLPHCLE 306
Query: 223 -----VLPGNFII 230
VLP N ++
Sbjct: 307 TPLPAVLPSNSLV 319
>sp|Q13686|ALKB1_HUMAN Alkylated DNA repair protein alkB homolog 1 OS=Homo sapiens
GN=ALKBH1 PE=1 SV=2
Length = 389
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 90/162 (55%), Gaps = 8/162 (4%)
Query: 64 NEDAHRWK-----FYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLP 118
N D H K +E+ LR K + LL KLRW T+G ++W + Y+
Sbjct: 130 NLDKHMSKEETQDLWEQSKEFLRYKEATKRRPRSLLEKLRWVTVGYHYNWDSKKYSADH- 188
Query: 119 HKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSM 178
+ P L L++++AA E+F+ EA I+NY+ L TLG H+D E D SKP++S
Sbjct: 189 YTPFPSDLGFLSEQVAAACG--FEDFRAEAGILNYYRLDSTLGIHVDRSELDHSKPLLSF 246
Query: 179 SLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220
S G AIFLLGG R++ P AMF+ SGD ++M+G +R H
Sbjct: 247 SFGQSAIFLLGGLQRDEAPTAMFMHSGDIMIMSGFSRLLNHA 288
>sp|O60066|ALKBH_SCHPO Alpha-ketoglutarate-dependent dioxygenase abh1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=abh1 PE=2 SV=3
Length = 302
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 5/155 (3%)
Query: 70 WKFYE----EDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDA 125
W+ Y E I G+T ++ +KLRW TLG Q+DW+ + Y P
Sbjct: 109 WRRYYNGDGESIIDGLGETKPLTVDRLVHKKLRWVTLGEQYDWTTKEYPDPSKSPGFPKD 168
Query: 126 LCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAI 185
L +++ + ++ EAAIVN++ GDTL H+D+ E D + P++S+S+G I
Sbjct: 169 LGDFVEKVVKESTDF-LHWKAEAAIVNFYSPGDTLSAHIDESEEDLTLPLISLSMGLDCI 227
Query: 186 FLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220
+L+G +SR + P A+ L SGD V+M G +R+ FH
Sbjct: 228 YLIGTESRSEKPSALRLHSGDVVIMTGTSRKAFHA 262
>sp|P05050|ALKB_ECOLI Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Escherichia coli
(strain K12) GN=alkB PE=1 SV=1
Length = 216
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Query: 97 LRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGL 156
L W T + +S + + P +P + L +R A A +FQP+A ++N +
Sbjct: 67 LGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG--YPDFQPDACLINRYAP 124
Query: 157 GDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARE 216
G L H D E D PIVS+SLG AIF GG R DP + L GD V+ GE+R
Sbjct: 125 GAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRL 184
Query: 217 CFHGECVLPGNF 228
+HG L F
Sbjct: 185 FYHGIQPLKAGF 196
>sp|P0CAT7|ALKB_CAUCR Alpha-ketoglutarate-dependent dioxygenase AlkB homolog
OS=Caulobacter crescentus (strain ATCC 19089 / CB15)
GN=alkB PE=3 SV=1
Length = 220
Score = 73.9 bits (180), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 7/135 (5%)
Query: 94 LRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNY 153
L L W + + + R+ P +P AL L L P P P++ +VN
Sbjct: 72 LGSLGWTSDARGYRYVDRHPETGRPWPDMPPALLDLWTVLGDPETP------PDSCLVNL 125
Query: 154 FGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGE 213
+ G +G H D EAD P++S+SLG A+F +GG +R+DP ++ L SGD + G
Sbjct: 126 YRDGARMGLHQDRDEADPRFPVLSISLGDTAVFRIGGVNRKDPTRSLRLASGDVCRLLGP 185
Query: 214 ARECFHG-ECVLPGN 227
AR FHG + +LPG+
Sbjct: 186 ARLAFHGVDRILPGS 200
>sp|B8GWW6|ALKB_CAUCN Alpha-ketoglutarate-dependent dioxygenase AlkB homolog
OS=Caulobacter crescentus (strain NA1000 / CB15N)
GN=alkB PE=3 SV=2
Length = 220
Score = 73.9 bits (180), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 7/135 (5%)
Query: 94 LRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNY 153
L L W + + + R+ P +P AL L L P P P++ +VN
Sbjct: 72 LGSLGWTSDARGYRYVDRHPETGRPWPDMPPALLDLWTVLGDPETP------PDSCLVNL 125
Query: 154 FGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGE 213
+ G +G H D EAD P++S+SLG A+F +GG +R+DP ++ L SGD + G
Sbjct: 126 YRDGARMGLHQDRDEADPRFPVLSISLGDTAVFRIGGVNRKDPTRSLRLASGDVCRLLGP 185
Query: 214 ARECFHG-ECVLPGN 227
AR FHG + +LPG+
Sbjct: 186 ARLAFHGVDRILPGS 200
>sp|P37462|ALKB_SALTY Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=alkB PE=3 SV=2
Length = 216
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 2/135 (1%)
Query: 97 LRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGL 156
L W T + ++ R+ P +P + + ++ A A FQP+A ++N +
Sbjct: 67 LGWTTDRHGYCYAVRDPLTDKPWPALPLSFASVCRQAAIAAG--YASFQPDACLINRYAP 124
Query: 157 GDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARE 216
G L H D E D PIVS+SLG A+F GG R DP + L GD V+ GE+R
Sbjct: 125 GAKLSLHQDKDEPDLRAPIVSVSLGVPAVFQFGGLRRSDPIQRILLEHGDIVVWGGESRL 184
Query: 217 CFHGECVLPGNFIIM 231
+HG L F M
Sbjct: 185 FYHGIQPLKAGFHPM 199
>sp|Q756L0|EAF1_ASHGO Chromatin modification-related protein EAF1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=EAF1 PE=3 SV=2
Length = 957
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 9 RESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKV--LLEEESSIGSLD--LGASSCTSN 64
R S++ + N G IDDL N + +KK+ ++EE+ + ++D L +S +
Sbjct: 393 RRSISHLQKSVNEVQEADTLGNIDDLLNKISDKKLAGMIEEQKKVIAVDAKLSSSKIAPS 452
Query: 65 EDAHRWKFYEEDIATLRGKTCKSV 88
E+ H +E+ + L + CK +
Sbjct: 453 EEIHAPHIWEDPLDELDEQGCKPI 476
>sp|A1S204|EFTU_SHEAM Elongation factor Tu OS=Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B) GN=tuf1 PE=3 SV=1
Length = 394
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 64/168 (38%), Gaps = 37/168 (22%)
Query: 10 ESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLL-----------EEESSIGSLDLGA 58
E+L S+ P R AF PI+D+F+ V+ EE +G D
Sbjct: 194 EALDSYIPEPERAIDKAFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKDTTK 253
Query: 59 SSCTSNEDAHRWKFYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVS-- 116
++CT E K +E A G+ C G+LLR G + D +R +S
Sbjct: 254 TTCTGVE--MFRKLLDEGRA---GENC-----GILLR-------GTKRDEVERGQVLSKP 296
Query: 117 ---LPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLG 161
PH K + L+K P + ++P+ YF D G
Sbjct: 297 GTIKPHTKFESEVYVLSKEEGGRHTPFFKGYRPQF----YFRTTDVTG 340
>sp|Q9LBW6|RMPR_MYCGS Putative HTH-type transcriptional regulator RmpR OS=Mycobacterium
gastri GN=rmpR PE=4 SV=2
Length = 274
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 116 SLPHKKIPDALCQ-LAKRLAAPAMPIGEEFQPEAAIVNYFGLG 157
SLP + DA+ + ++K +A + +GE PEAA+ FG+G
Sbjct: 14 SLPEIERADAIVERISKAIALGLLKVGERLPPEAALSEMFGVG 56
>sp|A1RTX9|SYL_PYRIL Leucine--tRNA ligase OS=Pyrobaculum islandicum (strain DSM 4184 /
JCM 9189) GN=leuS PE=3 SV=1
Length = 945
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%)
Query: 106 FDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLD 165
F W+K N + A Q+AKRL +G+E + A F +TL +
Sbjct: 845 FSWAKAALNGDVKTVVTAGAPPQVAKRLIDLVKTLGDEVRTLLASTEQFDELETLKSYKA 904
Query: 166 DMEADWSKPIVSMSLGCKAIFLLGGKSREDPPL 198
+E PI S+ + LGGK R PL
Sbjct: 905 YIERTLGTPIEIYSVDDPSAPDLGGKKRAALPL 937
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,638,859
Number of Sequences: 539616
Number of extensions: 3811972
Number of successful extensions: 7996
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7977
Number of HSP's gapped (non-prelim): 15
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)