Query 026678
Match_columns 235
No_of_seqs 200 out of 954
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 11:11:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00568 alkb DNA alkylation 100.0 4E-44 8.7E-49 302.4 9.5 130 90-221 40-169 (169)
2 PRK15401 alpha-ketoglutarate-d 100.0 8.4E-36 1.8E-40 259.8 13.6 131 93-225 64-194 (213)
3 PF13532 2OG-FeII_Oxy_2: 2OG-F 100.0 2.5E-30 5.5E-35 217.9 11.3 135 91-227 42-177 (194)
4 KOG2731 DNA alkylation damage 100.0 5.8E-30 1.3E-34 234.6 5.1 195 3-222 92-292 (378)
5 COG3145 AlkB Alkylated DNA rep 100.0 1.4E-28 3E-33 211.5 11.8 123 96-224 61-184 (194)
6 KOG4176 Uncharacterized conser 99.4 2.1E-12 4.6E-17 119.1 10.6 124 94-222 160-290 (323)
7 KOG3200 Uncharacterized conser 99.0 1E-09 2.2E-14 93.6 9.2 100 119-223 63-176 (224)
8 KOG2731 DNA alkylation damage 97.2 0.00012 2.7E-09 68.4 1.4 61 145-221 313-377 (378)
9 PF12933 FTO_NTD: FTO catalyti 96.9 0.0014 2.9E-08 58.8 4.6 78 143-221 135-236 (253)
10 PF03171 2OG-FeII_Oxy: 2OG-Fe( 96.7 0.0018 3.8E-08 48.7 3.2 84 146-234 1-96 (98)
11 KOG3959 2-Oxoglutarate- and ir 96.5 0.0014 3.1E-08 58.7 2.2 118 101-222 109-261 (306)
12 PF13640 2OG-FeII_Oxy_3: 2OG-F 96.3 0.004 8.7E-08 46.8 3.3 72 149-224 1-86 (100)
13 smart00702 P4Hc Prolyl 4-hydro 93.2 1.1 2.3E-05 37.1 9.9 107 125-234 60-177 (178)
14 PRK05467 Fe(II)-dependent oxyg 84.4 5.3 0.00011 35.5 7.8 76 148-231 81-171 (226)
15 PF09859 Oxygenase-NA: Oxygena 83.0 6.8 0.00015 33.5 7.5 99 121-226 42-160 (173)
16 PF12851 Tet_JBP: Oxygenase do 80.2 22 0.00048 30.0 9.8 75 144-225 76-153 (171)
17 COG3128 PiuC Uncharacterized i 64.8 23 0.0005 31.2 6.3 79 150-233 85-178 (229)
18 PRK10572 DNA-binding transcrip 62.1 50 0.0011 29.1 8.3 74 141-222 15-91 (290)
19 COG3826 Uncharacterized protei 59.9 40 0.00087 29.7 6.9 66 144-211 122-196 (236)
20 COG2850 Uncharacterized conser 58.7 41 0.00089 32.3 7.3 90 121-223 98-202 (383)
21 PF08007 Cupin_4: Cupin superf 57.2 16 0.00035 33.6 4.4 59 147-211 112-189 (319)
22 PF07883 Cupin_2: Cupin domain 33.6 33 0.00071 23.3 1.9 55 154-220 5-59 (71)
23 PF03079 ARD: ARD/ARD' family; 31.7 67 0.0015 26.9 3.8 42 176-219 95-136 (157)
24 KOG0813 Glyoxylase [General fu 31.2 1.6E+02 0.0036 26.9 6.5 118 97-232 5-126 (265)
25 PF13661 2OG-FeII_Oxy_4: 2OG-F 29.7 46 0.001 23.5 2.2 23 147-169 11-33 (70)
26 PF15410 PH_9: Pleckstrin homo 29.4 98 0.0021 24.2 4.3 66 149-215 36-104 (119)
27 PF13621 Cupin_8: Cupin-like d 29.2 48 0.001 28.0 2.6 78 148-233 132-244 (251)
28 TIGR01762 chlorin-enz chlorina 27.2 3.3E+02 0.0072 24.7 7.9 32 197-231 208-241 (288)
29 PRK13264 3-hydroxyanthranilate 26.6 4.2E+02 0.0091 22.8 9.5 88 121-218 8-96 (177)
30 COG1917 Uncharacterized conser 24.8 3.3E+02 0.0071 21.0 6.9 62 152-225 48-109 (131)
31 TIGR03037 anthran_nbaC 3-hydro 24.6 4.3E+02 0.0094 22.3 8.7 89 122-220 3-92 (159)
32 KOG2511 Nicotinic acid phospho 24.5 12 0.00027 35.6 -2.0 33 200-232 270-303 (420)
33 PF13418 Kelch_4: Galactose ox 23.3 81 0.0018 20.0 2.3 42 176-224 6-47 (49)
34 COG1791 Uncharacterized conser 21.7 2E+02 0.0044 24.9 4.9 41 176-218 98-138 (181)
No 1
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=100.00 E-value=4e-44 Score=302.35 Aligned_cols=130 Identities=42% Similarity=0.664 Sum_probs=120.1
Q ss_pred hhhccceeeEeeeCceeeeCCCcccCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCCCCcCcccCCCCc
Q 026678 90 AGVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEA 169 (235)
Q Consensus 90 ~~~ll~klRW~tlG~~Ydw~~~~Y~~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~ 169 (235)
++.+.+||||++.|++|+|+++.|....++++||++|.+|++++++.+ +..++.||+||||||++||+||||+|++|.
T Consensus 40 pr~~~~~l~W~~~g~~Y~ys~~~~~~~~~~p~~P~~L~~L~~~v~~~~--g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~ 117 (169)
T TIGR00568 40 AMTNLGKLGWTTHGQGYLYSPKDPQTNKPWPAMPQDLGDLCERVATAA--GFPDFQPDACLVNRYAPGATLSLHQDRDEP 117 (169)
T ss_pred hhhhcccceEEcCCCcccCCCcccCCCCCCCCCCHHHHHHHHHHHHHh--CCCCCCCCEEEEEeecCCCccccccccccc
Confidence 366778999999999999999999766678789999999999998776 455689999999999999999999998888
Q ss_pred CCCCCeEEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccceeecc
Q 026678 170 DWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGE 221 (235)
Q Consensus 170 ~~~~PIvSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~H~V 221 (235)
+++.||||||||++|+|+|+++++++.+.+|.|+|||+|||+|++|++||||
T Consensus 118 ~~~~pI~SvSLG~~r~F~~~~~~~~~~~~~l~L~sGsllvM~G~sR~~~Hgv 169 (169)
T TIGR00568 118 DLRAPLLSVSLGLPAIFLIGGLKRNDPPKRLRLHSGDVVIMGGESRLAFHGV 169 (169)
T ss_pred cCCCCEEEEeCCCCEEEEecCCcCCCceEEEEeCCCCEEEECCchhccccCC
Confidence 7889999999999999999999888889999999999999999999999998
No 2
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=100.00 E-value=8.4e-36 Score=259.77 Aligned_cols=131 Identities=35% Similarity=0.520 Sum_probs=114.5
Q ss_pred ccceeeEeeeCceeeeCCCcccCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCCCCcCcccCCCCcCCC
Q 026678 93 LLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWS 172 (235)
Q Consensus 93 ll~klRW~tlG~~Ydw~~~~Y~~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~~~~ 172 (235)
-+.++.|++-...|+|+........||++||++|.+|+++++..+ ++.+|.||+||||||++|++||||+|++|.+++
T Consensus 64 ~~G~~~W~~d~~~YrYs~~~~~~~~pwp~~P~~l~~L~~~~~~~~--~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~~~ 141 (213)
T PRK15401 64 NCGALGWVTDRRGYRYSPIDPLTGKPWPAMPASFLALAQRAAAAA--GFPGFQPDACLINRYAPGAKLSLHQDKDERDFR 141 (213)
T ss_pred ccccceEecCCCCcccCCcCCCCCCCCCCchHHHHHHHHHHHHHc--CCCCCCCCEEEEEeccCcCccccccCCCcccCC
Confidence 356789998666777776542234589999999999999998776 456789999999999999999999998787788
Q ss_pred CCeEEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccceeeccCCCC
Q 026678 173 KPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECVLP 225 (235)
Q Consensus 173 ~PIvSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~H~VP~~~ 225 (235)
.||||||||++|+|.||+.++++.+.+|.|+|||||||+|++|++|||||+++
T Consensus 142 ~pI~SvSLG~~~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~sr~~~HgVp~~~ 194 (213)
T PRK15401 142 APIVSVSLGLPAVFQFGGLKRSDPLQRILLEHGDVVVWGGPSRLRYHGILPLK 194 (213)
T ss_pred CCEEEEeCCCCeEEEecccCCCCceEEEEeCCCCEEEECchHhheeccCCcCC
Confidence 99999999999999999988878889999999999999999999999999654
No 3
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=99.97 E-value=2.5e-30 Score=217.86 Aligned_cols=135 Identities=31% Similarity=0.537 Sum_probs=104.3
Q ss_pred hhccceeeEeeeCceeeeCCC-cccCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCCCCcCcccCCCCc
Q 026678 91 GVLLRKLRWCTLGLQFDWSKR-NYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEA 169 (235)
Q Consensus 91 ~~ll~klRW~tlG~~Ydw~~~-~Y~~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~ 169 (235)
+.+.++++|.+.|..|+|+.+ .+. ..+++++|++|.++.+++.+... ....+.||+||||+|.+|++|++|+|+++.
T Consensus 42 ~~~~~~~~~~~~~~~y~y~~~~~~~-~~~~~~~p~~l~~~~~~~~~~~~-~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~ 119 (194)
T PF13532_consen 42 RKLCGGLSWVGDGPSYRYSGKRPVR-SKPWPPFPEWLSRLLERLVEATG-IPPGWRPNQCLINYYRDGSGIGPHSDDEEY 119 (194)
T ss_dssp CE-SSEEEEEECT--CCCTCC-EEC-CCEBSCCHHHHHHHHHHHHHHHT--SHSS--SEEEEEEESSTT-EEEE---TTC
T ss_pred eecceeeEEECCCCCeEcCCccccC-CCCCCCccHHHHHHHHHHHHHhc-cccCCCCCEEEEEecCCCCCcCCCCCcccc
Confidence 346789999999999999987 554 35689999999999999987552 134689999999999999999999999876
Q ss_pred CCCCCeEEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccceeeccCCCCCc
Q 026678 170 DWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECVLPGN 227 (235)
Q Consensus 170 ~~~~PIvSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~H~VP~~~~~ 227 (235)
+++.||+|||||++|+|.|+++...+....+.|.+||++||+|++|..|||||+.+..
T Consensus 120 ~~~~~I~slSLG~~~~~~f~~~~~~~~~~~~~L~~gsl~vm~g~~r~~~H~I~~~~~~ 177 (194)
T PF13532_consen 120 GFGPPIASLSLGSSRVFRFRNKSDDDEPIEVPLPPGSLLVMSGEARYDWHGIPPVKKD 177 (194)
T ss_dssp -CCSEEEEEEEES-EEEEEEECGGTS-EEEEEE-TTEEEEEETTHHHHEEEE-S-SCE
T ss_pred cCCCcEEEEEEccCceEEEeeccCCCccEEEEcCCCCEEEeChHHhhheeEcccccCC
Confidence 6789999999999999999998777789999999999999999999988999976653
No 4
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=99.96 E-value=5.8e-30 Score=234.63 Aligned_cols=195 Identities=34% Similarity=0.414 Sum_probs=147.2
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCccccCCchhhHHHhhhhhhhhhhhcccCccCCCCCCCC--Cccccccceeeccch-hc
Q 026678 3 EQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGASSCT--SNEDAHRWKFYEEDI-AT 79 (235)
Q Consensus 3 ~Q~~wi~~~L~~y~~~Pn~tNl~~~y~p~~~lw~~~~~~~~l~~~~~~~~~~~~g~~~~~--~~~~~~~w~~~~~~~-~~ 79 (235)
+|..||.+| |+.|++++|..+++|+.+ +... .+.|. .+-....|....+.+ +.
T Consensus 92 g~~k~~lqs----~~~~~s~~~~v~qe~e~~--~~~a------------------~~~c~l~~~~sd~t~~~~~s~ss~~ 147 (378)
T KOG2731|consen 92 GDNKLILQS----PQLPRSGGHFVIQEPENK--KSGA------------------PNYCLLVNRMSDVTLQDLESVSSES 147 (378)
T ss_pred ccccccccC----CCcCcccceeeeeccccc--cccC------------------cccccccccccccccccccccchhh
Confidence 455666663 899999999999988642 1111 11111 111112233222222 34
Q ss_pred ccCccccccchhhccceeeEeeeCceeeeCCCccc--CCCCCCCChHHHHHHHHHHHhccCCCCCCCCCce-EEeeecCC
Q 026678 80 LRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYN--VSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEA-AIVNYFGL 156 (235)
Q Consensus 80 ~~~~~~~~~~~~~ll~klRW~tlG~~Ydw~~~~Y~--~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a-~iVN~Y~~ 156 (235)
+...+++++.++.+++||||+|+|++|||+++.|- -+..+.-+|++|..+.+.-++++. ++.++...+ +|+|||..
T Consensus 148 ~~~~e~~sv~~~r~~~KlRw~T~G~~~dw~s~~~~~~~s~k~~~~~~~ll~~~~~~~~~a~-~~~~~~~~~Gli~nYlsi 226 (378)
T KOG2731|consen 148 DQNVELKSVRNHRLLPKLRWVTLGNQYDWSSKDIFIFLSKKHYNIKPSLLGLLREKVKAAK-GFSHIVIRPGLIKNYLSI 226 (378)
T ss_pred hccccceeccchhhhhhhcccccccccCCccccccccccccCCCCChHHhhhhhhhhhhhc-CccceeccCcceeeeccc
Confidence 55677889999999999999999999999999922 233466677777776665554443 444555554 59999999
Q ss_pred CCCcCcccCCCCcCCCCCeEEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccceeeccC
Q 026678 157 GDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGEC 222 (235)
Q Consensus 157 Gd~lg~H~D~~E~~~~~PIvSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~H~VP 222 (235)
+++|+.|.|..|++...|++|+|||++|||++|...+++.+.+++|++||+++|+|.+|.++||||
T Consensus 227 ~~tl~ih~d~reld~~~pf~s~s~g~~ai~lLg~m~l~e~p~p~~lrsGdv~im~Gfsrlv~haIp 292 (378)
T KOG2731|consen 227 DDTLGIHLDCRELDLSKPFYSPSLGQGAILLLGMMCLGENPDPMTLRSGDVVIMDGFSRLVEHAIP 292 (378)
T ss_pred CcEEEEEeehhhcccCCccccccccccceeeecccccCCCCCccccccCceEeecchHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999
No 5
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.4e-28 Score=211.50 Aligned_cols=123 Identities=32% Similarity=0.406 Sum_probs=104.5
Q ss_pred eeeEeeeCceeeeCCCcccCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCCCCcCcccCCCCcCCCCCe
Q 026678 96 KLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPI 175 (235)
Q Consensus 96 klRW~tlG~~Ydw~~~~Y~~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~~~~~PI 175 (235)
.+.|++.=..|.|+.+.+....+++++|..+.++.. ++ ++..+.|||||||+|++||+||||+|.+|++...||
T Consensus 61 ~~~W~~d~~gy~y~~~~p~~~~p~p~l~~~~~~~~~----~~--g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~~~~~v 134 (194)
T COG3145 61 LLGWVTDRRGYRYSLRSPLTGKPWPPLLALFHDLFG----AA--GYPFEGPEAVLVNRYRPGASIGWHQDKDEEDDRPPV 134 (194)
T ss_pred ccceecccccccccccccCCCCCCCccHHHHHHHHH----Hh--cCCCCChhheeEEeccCCCccccccccccccCCCce
Confidence 888998855577777777766666666676666665 33 456789999999999999999999999988777789
Q ss_pred EEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEccccccee-eccCCC
Q 026678 176 VSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECF-HGECVL 224 (235)
Q Consensus 176 vSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~-H~VP~~ 224 (235)
||||||++|+|.|+++.+.+..+++.|+|||||||+|++|+.| |.||+.
T Consensus 135 ~slSLg~~~~F~~~~~~r~~~~~~~~L~~Gdvvvm~G~~r~~~~h~~p~~ 184 (194)
T COG3145 135 ASLSLGAPCIFRLRGRRRRGPGLRLRLEHGDVVVMGGPSRLAWHHIIPKT 184 (194)
T ss_pred EEEecCCCeEEEeccccCCCCceeEEecCCCEEEecCCcccccccccccc
Confidence 9999999999999999887889999999999999999999988 688843
No 6
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=2.1e-12 Score=119.07 Aligned_cols=124 Identities=24% Similarity=0.381 Sum_probs=101.5
Q ss_pred cceeeEeeeCceeeeCCCcccCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCCCCcCcccCCCCcCCCC
Q 026678 94 LRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSK 173 (235)
Q Consensus 94 l~klRW~tlG~~Ydw~~~~Y~~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~~~~~ 173 (235)
.++++...||+-|+|.+..-+...+..|+|..+..+.+++...-. ... +||+|+||+|.+|++|..|.|++ .|..
T Consensus 160 gk~R~~iq~G~~f~y~~~~~d~~~~~~piPs~~~~ii~rlv~~~~--ip~-~pd~~~iN~Ye~G~~i~ph~~~~--~F~~ 234 (323)
T KOG4176|consen 160 GKHREVIQLGYPFDYRTNNVDESKPVDPIPSLFKSIIDRLVSWRV--IPE-RPDQCTINFYEPGDGIPPHIDHS--AFLD 234 (323)
T ss_pred ccceeeeecCceeccCCCcccccCccCCCchHHHHHHHHhhhhcc--CCC-CCCeeEEEeeCCCCCCCCCCChH--HhcC
Confidence 566677789999999998877655578999999999999987642 233 79999999999999999999765 3789
Q ss_pred CeEEEccCCceEEEeeCCCCCC------CCEEEEcCCCcEEEEcccc-cceeeccC
Q 026678 174 PIVSMSLGCKAIFLLGGKSRED------PPLAMFLRSGDAVLMAGEA-RECFHGEC 222 (235)
Q Consensus 174 PIvSiSLG~~~iF~~~~~~~~~------~~~~l~L~sGDvlvM~G~s-R~~~H~VP 222 (235)
||+|+||-++|+|.||+....+ ....+.|+-|+++||.|.+ -..-|.++
T Consensus 235 Pi~slS~lSe~~m~Fg~~~~~~~~~~~~g~~s~p~~~g~~lvi~~~~ad~~~~~~~ 290 (323)
T KOG4176|consen 235 PISSLSFLSECTMEFGHGLLSDNIGNFRGSLSLPLRYGSVLVIRGRSADVAPHCIR 290 (323)
T ss_pred ceEEEEeecceeEEecccccccCccccccccccccccCeEEEeCCCcccccccccC
Confidence 9999999999999999852211 2478899999999999987 55556665
No 7
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=1e-09 Score=93.57 Aligned_cols=100 Identities=15% Similarity=0.261 Sum_probs=78.4
Q ss_pred CCCChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCCCCcCcccCCCCcCCCCCeEEEccCCceEEEeeCCCC-----
Q 026678 119 HKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSR----- 193 (235)
Q Consensus 119 ~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~~~~~PIvSiSLG~~~iF~~~~~~~----- 193 (235)
...+|+||..+..++.... -+.+ ..|.+|||.|.+|++|+.|.|-.- +-.-|..||||+.+++.|-..-|
T Consensus 63 peelP~wLq~~v~kinnlg--lF~s-~~NHVLVNeY~pgqGImPHtDGPa--f~piVstiSlGsh~vldf~~p~r~e~~d 137 (224)
T KOG3200|consen 63 PEELPPWLQYYVDKINNLG--LFKS-PANHVLVNEYLPGQGIMPHTDGPA--FHPIVSTISLGSHTVLDFYDPVRQEVND 137 (224)
T ss_pred ccccCHHHHHHHHHhhccc--ccCC-CcceeEeecccCCCCcCcCCCCCc--ccceEEEEecCCceEEecccccccccCC
Confidence 4689999999999998654 3444 789999999999999999999642 33335689999999999975211
Q ss_pred -----CC---CCEEEEcCCCcEEEEcccccc-eeeccCC
Q 026678 194 -----ED---PPLAMFLRSGDAVLMAGEARE-CFHGECV 223 (235)
Q Consensus 194 -----~~---~~~~l~L~sGDvlvM~G~sR~-~~H~VP~ 223 (235)
+. ..+.+.|++.++||+.+.+=. ..|||.-
T Consensus 138 ~te~~dqp~R~~fsllleprslLilkd~aYtd~LHgIs~ 176 (224)
T KOG3200|consen 138 GTESKDQPLRYLFSLLLEPRSLLILKDDAYTDFLHGISD 176 (224)
T ss_pred ccccCCCCccceeeeeeccceEEEEcCcHHHHHHhhccc
Confidence 11 246899999999999999955 4499974
No 8
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=97.22 E-value=0.00012 Score=68.40 Aligned_cols=61 Identities=36% Similarity=0.589 Sum_probs=52.1
Q ss_pred CCceEEeeecCCCCCcCcccCCCCcC----CCCCeEEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccceeec
Q 026678 145 QPEAAIVNYFGLGDTLGGHLDDMEAD----WSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220 (235)
Q Consensus 145 ~p~a~iVN~Y~~Gd~lg~H~D~~E~~----~~~PIvSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~H~ 220 (235)
-|+.||||||..--+|+.|.|..|.. -+-||++||.|. +-|+++... |+.. |.+|..+||
T Consensus 313 lp~i~~~~f~~~~g~~~~~Q~~~ey~ks~r~nl~Irqv~~~d-~~f~~~~~~-d~~~--------------~~sr~~f~~ 376 (378)
T KOG2731|consen 313 LPDICIVNFYSETGSLGLHQDKAEYLKSSRVNLPIRQVSIGD-AEFLYGDQR-DEDK--------------GRSRMVFHG 376 (378)
T ss_pred CcccccccccCCCcccccchhHHHHHHhhhcCceeEEeccCc-cccccCchh-hhhh--------------hhheecccC
Confidence 78999999999999999999997742 246899999999 999999864 4443 889999999
Q ss_pred c
Q 026678 221 E 221 (235)
Q Consensus 221 V 221 (235)
|
T Consensus 377 ~ 377 (378)
T KOG2731|consen 377 V 377 (378)
T ss_pred C
Confidence 7
No 9
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family. This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.
Probab=96.88 E-value=0.0014 Score=58.78 Aligned_cols=78 Identities=27% Similarity=0.330 Sum_probs=41.5
Q ss_pred CCCCceEEeeecCC----------------C-CCcCcccCCCCcCCCCCeEEEccCC----ceEEEeeCC--CCCCCCEE
Q 026678 143 EFQPEAAIVNYFGL----------------G-DTLGGHLDDMEADWSKPIVSMSLGC----KAIFLLGGK--SREDPPLA 199 (235)
Q Consensus 143 ~~~p~a~iVN~Y~~----------------G-d~lg~H~D~~E~~~~~PIvSiSLG~----~~iF~~~~~--~~~~~~~~ 199 (235)
...+|..||||+.+ | -.+|||.|..=. ..++|+-.|--+ +..-.++=+ .-+.+.+.
T Consensus 135 ~~~fNvTLlN~MdP~~~~~~~LK~Ep~fgmGKmaVsWH~DenL~-~~StVAVY~~s~~~~~~~~W~VgLka~D~~tP~L~ 213 (253)
T PF12933_consen 135 SCEFNVTLLNYMDPSSQAMPDLKEEPYFGMGKMAVSWHHDENLV-ERSTVAVYSYSCEEPEPADWHVGLKAWDIETPGLA 213 (253)
T ss_dssp -----EEEEEEE-S--S-SSS--B-SSS---BEEEEEE---SB--TT--EEEEEEE-----TTSEEEEEETT--SS-EEE
T ss_pred ceeeehhhhhccCcccccccccccccccCCcceeeeeccccccc-cccceEEEEecCCCCCCCceEEEEeecCCCCCeeE
Confidence 45789999999998 2 348999996422 346776555444 234443322 22346789
Q ss_pred EEcCCCcEEEEcccc-cceeecc
Q 026678 200 MFLRSGDAVLMAGEA-RECFHGE 221 (235)
Q Consensus 200 l~L~sGDvlvM~G~s-R~~~H~V 221 (235)
+.|++||...|-+.- ..+.|+|
T Consensus 214 vPL~sgd~Y~Mldd~N~tHqH~V 236 (253)
T PF12933_consen 214 VPLRSGDCYYMLDDFNATHQHCV 236 (253)
T ss_dssp EEE-TT-EEEE-TTHHHHEEEEE
T ss_pred EeccCCCeEEEccccchhhHHHH
Confidence 999999999999998 7788887
No 10
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=96.66 E-value=0.0018 Score=48.71 Aligned_cols=84 Identities=14% Similarity=0.250 Sum_probs=44.3
Q ss_pred CceEEeeecC---CCCCcCcccCCCCcCCCCCeEEEccC-CceEEEeeCCCC----CCCCEEEEcCCCc-EEEEcccc-c
Q 026678 146 PEAAIVNYFG---LGDTLGGHLDDMEADWSKPIVSMSLG-CKAIFLLGGKSR----EDPPLAMFLRSGD-AVLMAGEA-R 215 (235)
Q Consensus 146 p~a~iVN~Y~---~Gd~lg~H~D~~E~~~~~PIvSiSLG-~~~iF~~~~~~~----~~~~~~l~L~sGD-vlvM~G~s-R 215 (235)
++.+.+|+|. .+.++++|.|.+ ..+++|-+- ...-+.|..... ...+..+.+..|| +.+|++.. +
T Consensus 1 ~~~~~~~~Y~~~~~~~~~~~H~D~~-----~~~~Til~~~~~~gL~~~~~~~~~~v~~~~~~~~v~~G~~l~~~t~g~~~ 75 (98)
T PF03171_consen 1 PSQLRLNRYPPPENGVGIGPHTDDE-----DGLLTILFQDEVGGLQVRDDGEWVDVPPPPGGFIVNFGDALEILTNGRYP 75 (98)
T ss_dssp --EEEEEEE-SCCGCEEEEEEEES-------SSEEEEEETSTS-EEEEETTEEEE----TTCEEEEEBHHHHHHTTTSS-
T ss_pred CCEEEEEECCCcccCCceeCCCcCC-----CCeEEEEecccchheeccccccccCccCccceeeeeceeeeecccCCccC
Confidence 4788999999 779999999974 235555443 444555544310 0112245555555 44455555 5
Q ss_pred ceeeccCCC--CCcceeeeee
Q 026678 216 ECFHGECVL--PGNFIIMIWC 234 (235)
Q Consensus 216 ~~~H~VP~~--~~~~~~~~~~ 234 (235)
.+.|+|... ..-+.+++|+
T Consensus 76 ~~~HrV~~~~~~~R~s~~~f~ 96 (98)
T PF03171_consen 76 ATLHRVVPPTEGERYSLTFFL 96 (98)
T ss_dssp ---EEEE--STS-EEEEEEEE
T ss_pred CceeeeEcCCCCCEEEEEEEE
Confidence 567999733 6777888875
No 11
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=96.51 E-value=0.0014 Score=58.66 Aligned_cols=118 Identities=22% Similarity=0.367 Sum_probs=79.4
Q ss_pred eeCceeeeCCCcccCCCCCCCChHHHHHHHHHHHhccCCCCCCCCC-ceEEeeecCCC-CCcCcccCCCCcCCCCCeEEE
Q 026678 101 TLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQP-EAAIVNYFGLG-DTLGGHLDDMEADWSKPIVSM 178 (235)
Q Consensus 101 tlG~~Ydw~~~~Y~~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p-~a~iVN~Y~~G-d~lg~H~D~~E~~~~~PIvSi 178 (235)
.+|-.-||..+....+ .+..||+.-..+.+++... |...+|+| ++|=+-|=+.. +.|-+|+||.=. ++.-+|++
T Consensus 109 dyGPKvNFkk~Klkt~-~F~G~P~~~~~v~rrm~~y--p~l~gfqp~EqCnLeYep~kgsaIdpH~DD~Wi-WGeRlv~~ 184 (306)
T KOG3959|consen 109 DYGPKVNFKKKKLKTD-TFVGMPEYADMVLRRMSEY--PVLKGFQPFEQCNLEYEPVKGSAIDPHQDDMWI-WGERLVRS 184 (306)
T ss_pred ccCCccchhhhhhccC-cccCCchHHHHHHHHhhcc--chhhccCcHHHcCcccccccCCccCccccchhh-hhhheeeh
Confidence 5788888877776543 4779999888888887642 23344543 78888777765 999999999633 34344433
Q ss_pred c--------cC-----CceEEEeeCC-------------------CCCCCCEEEEcCCCcEEEEccccccee-eccC
Q 026678 179 S--------LG-----CKAIFLLGGK-------------------SREDPPLAMFLRSGDAVLMAGEARECF-HGEC 222 (235)
Q Consensus 179 S--------LG-----~~~iF~~~~~-------------------~~~~~~~~l~L~sGDvlvM~G~sR~~~-H~VP 222 (235)
- |- +++++.+... ........|.+.+.|+|||.|++|+-| |||-
T Consensus 185 n~l~d~vl~lc~~e~~~sg~~nL~~~~s~~~e~l~~~li~~s~~~l~~~~~~~ipmP~rSLlvl~g~aRyqwkH~vl 261 (306)
T KOG3959|consen 185 NRLFDFVLKLCSKECLASGIINLNTNFSESNEFLSINLINGSVMTLNKSFLCYIPMPHRSLLVLAGEARYQWKHGVL 261 (306)
T ss_pred hhccHHHHHhhhhhhhccceeeeccCccccccccchhhcccchhhhccceEEEeecCcceeEEeechhHhhHHHHHH
Confidence 2 11 2234433321 112345689999999999999999977 9985
No 12
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=96.29 E-value=0.004 Score=46.83 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=44.7
Q ss_pred EEeeecCCCCCcCcccCCCCcCCCCCeEEEc--cC-Cc-----eEEEeeCCC-CCCCCEEEE-----cCCCcEEEEcccc
Q 026678 149 AIVNYFGLGDTLGGHLDDMEADWSKPIVSMS--LG-CK-----AIFLLGGKS-REDPPLAMF-----LRSGDAVLMAGEA 214 (235)
Q Consensus 149 ~iVN~Y~~Gd~lg~H~D~~E~~~~~PIvSiS--LG-~~-----~iF~~~~~~-~~~~~~~l~-----L~sGDvlvM~G~s 214 (235)
|=+|.|.+|+.+++|.|.... ..-++++- |. .. ..+.|-... .+.....+. .+.|+++++.+
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~~--~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~-- 76 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSYD--PHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPS-- 76 (100)
T ss_dssp -EEEEEETTEEEEEEESSSCC--CSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEES--
T ss_pred CEEEEECcCCEEeeeECCCCC--CcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeC--
Confidence 347999999999999998431 11233222 33 11 334443322 234445555 99999999999
Q ss_pred cceeeccCCC
Q 026678 215 RECFHGECVL 224 (235)
Q Consensus 215 R~~~H~VP~~ 224 (235)
...+|+|..+
T Consensus 77 ~~~~H~v~~v 86 (100)
T PF13640_consen 77 DNSLHGVTPV 86 (100)
T ss_dssp CTCEEEEEEE
T ss_pred CCCeecCccc
Confidence 8899999866
No 13
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=93.24 E-value=1.1 Score=37.14 Aligned_cols=107 Identities=24% Similarity=0.377 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhccCCC-CCCCCCceEEeeecCCCCCcCcccCCCCcCC-CCCeEEEcc-------CCceEEEeeCCCCCC
Q 026678 125 ALCQLAKRLAAPAMPI-GEEFQPEAAIVNYFGLGDTLGGHLDDMEADW-SKPIVSMSL-------GCKAIFLLGGKSRED 195 (235)
Q Consensus 125 ~L~~L~~~~~~~~~~~-~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~~~-~~PIvSiSL-------G~~~iF~~~~~~~~~ 195 (235)
....|.+++....... +.....+.+-|+.|..|+....|.|...... +.-++++-+ |..-.|.-.+ ..
T Consensus 60 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Y~~g~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~~---~~ 136 (178)
T smart00702 60 VIERIRQRLADFLGLLRGLPLSAEDAQVARYGPGGHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGLG---LM 136 (178)
T ss_pred HHHHHHHHHHHHHCCCchhhccCcceEEEEECCCCcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCCC---Cc
Confidence 3445555555443200 0124567888899999999999999864321 122333222 1111221111 12
Q ss_pred CCEEEEcCCCcEEEEcccccceeeccCCCC--Ccceeeeee
Q 026678 196 PPLAMFLRSGDAVLMAGEARECFHGECVLP--GNFIIMIWC 234 (235)
Q Consensus 196 ~~~~l~L~sGDvlvM~G~sR~~~H~VP~~~--~~~~~~~~~ 234 (235)
....+.-..|++|++...-...+|+|-.+. ..+.+.+|+
T Consensus 137 ~~~~v~P~~G~~v~f~~~~~~~~H~v~pv~~G~r~~~~~W~ 177 (178)
T smart00702 137 VCATVKPKKGDLLFFPSGRGRSLHGVCPVTRGSRWAITGWI 177 (178)
T ss_pred cceEEeCCCCcEEEEeCCCCCccccCCcceeCCEEEEEEEE
Confidence 345888899999999755446779996443 355666675
No 14
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=84.40 E-value=5.3 Score=35.52 Aligned_cols=76 Identities=18% Similarity=0.223 Sum_probs=46.0
Q ss_pred eEEeeecCCCCCcCcccCCCCcCC-C-----CCeEEEc--c-------CCceEEEeeCCCCCCCCEEEEcCCCcEEEEcc
Q 026678 148 AAIVNYFGLGDTLGGHLDDMEADW-S-----KPIVSMS--L-------GCKAIFLLGGKSREDPPLAMFLRSGDAVLMAG 212 (235)
Q Consensus 148 a~iVN~Y~~Gd~lg~H~D~~E~~~-~-----~PIvSiS--L-------G~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G 212 (235)
-..+|.|..|...++|+|..-... + .-.+|+. | |..-+|.- ......+.+..||+|++..
T Consensus 81 ~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~-----~~g~~~Vkp~aG~~vlfps 155 (226)
T PRK05467 81 PPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIED-----TYGEHRVKLPAGDLVLYPS 155 (226)
T ss_pred cceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEec-----CCCcEEEecCCCeEEEECC
Confidence 467999999999999999864311 0 1123322 2 22222211 1124688899999999986
Q ss_pred cccceeeccCCCCCcceee
Q 026678 213 EARECFHGECVLPGNFIIM 231 (235)
Q Consensus 213 ~sR~~~H~VP~~~~~~~~~ 231 (235)
. .+|.|-.+....+++
T Consensus 156 ~---~lH~v~pVt~G~R~~ 171 (226)
T PRK05467 156 T---SLHRVTPVTRGVRVA 171 (226)
T ss_pred C---CceeeeeccCccEEE
Confidence 4 669886433333443
No 15
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=82.99 E-value=6.8 Score=33.54 Aligned_cols=99 Identities=25% Similarity=0.390 Sum_probs=58.1
Q ss_pred CChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCCCCcCcccCCCCcCCCCCe-EEEccCCce------EEEeeCC-C
Q 026678 121 KIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPI-VSMSLGCKA------IFLLGGK-S 192 (235)
Q Consensus 121 ~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~~~~~PI-vSiSLG~~~------iF~~~~~-~ 192 (235)
.+|+.+.++.++..++. ..+| ..|+..|..||....|.|---+ .-=|| +-|=|-.+. .|.+.-. .
T Consensus 42 ~yP~~~~~fl~~ch~aG-----Q~rp-tplllrY~~gdyn~LHqdlyGe-~vFPlQvv~lLs~Pg~DftGGEFVltEQrP 114 (173)
T PF09859_consen 42 RYPATLAEFLARCHAAG-----QTRP-TPLLLRYGPGDYNCLHQDLYGE-HVFPLQVVILLSEPGEDFTGGEFVLTEQRP 114 (173)
T ss_pred CCCccHHHHHHHHHhcc-----CCCC-chhhheeCCCCccccccCCCCC-cccCeEEEEEcCCCCCcccCceEEEEEecC
Confidence 55656666665554432 2344 4566789999999999997432 22354 333333332 3544321 1
Q ss_pred C-CCCCEEEEcCCCcEEEEcccc----------ccee-eccCCCCC
Q 026678 193 R-EDPPLAMFLRSGDAVLMAGEA----------RECF-HGECVLPG 226 (235)
Q Consensus 193 ~-~~~~~~l~L~sGDvlvM~G~s----------R~~~-H~VP~~~~ 226 (235)
| ...+..+.|+-||.+|+.-.- |-.. |||-++-.
T Consensus 115 R~QSR~~V~~L~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~vrs 160 (173)
T PF09859_consen 115 RMQSRAMVLPLRQGDALIFATNHRPVRGARGYYRVNMRHGVSRVRS 160 (173)
T ss_pred CccCccccCCcCCCCEEEEecCCCCcCCCccceecccccccccccc
Confidence 2 235788999999999997432 3333 88874433
No 16
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=80.21 E-value=22 Score=30.00 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=45.5
Q ss_pred CCCceEEeeecCCCCCcCcccCCCCcCCC-CCeEEEccC--CceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccceeec
Q 026678 144 FQPEAAIVNYFGLGDTLGGHLDDMEADWS-KPIVSMSLG--CKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220 (235)
Q Consensus 144 ~~p~a~iVN~Y~~Gd~lg~H~D~~E~~~~-~PIvSiSLG--~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~H~ 220 (235)
|.-=.++.|+ ....|.|......+ ..++.+-.| ....|.+-....+---+++.+.+||||++-| +...||
T Consensus 76 Fs~~sv~~nr-----~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~~~~~~g~~~~~~~GtVl~~~~--~~~~Hg 148 (171)
T PF12851_consen 76 FSGVSVISNR-----CTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGLDPNILGVAFAYQPGTVLIFCA--KRELHG 148 (171)
T ss_pred eeceEEEeec-----CccceecCCCCCCCeEEEEecCCccccCceEeccccccccCCEEEecCCCcEEEEcc--cceeee
Confidence 4333455555 67789998543222 223344444 3456666442222346799999999999875 566799
Q ss_pred cCCCC
Q 026678 221 ECVLP 225 (235)
Q Consensus 221 VP~~~ 225 (235)
|..+.
T Consensus 149 vtpv~ 153 (171)
T PF12851_consen 149 VTPVE 153 (171)
T ss_pred cCccc
Confidence 98544
No 17
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=64.83 E-value=23 Score=31.23 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=48.2
Q ss_pred EeeecCCCCCcCcccCCCCcC-C--CCCeEEEccCCceEEEee-CCCCCC---------CCEEEEcCCCcEEEEcccccc
Q 026678 150 IVNYFGLGDTLGGHLDDMEAD-W--SKPIVSMSLGCKAIFLLG-GKSRED---------PPLAMFLRSGDAVLMAGEARE 216 (235)
Q Consensus 150 iVN~Y~~Gd~lg~H~D~~E~~-~--~~PIvSiSLG~~~iF~~~-~~~~~~---------~~~~l~L~sGDvlvM~G~sR~ 216 (235)
+-|.|+.|+..+.|+|-.-.. . ..+ +++=--+|...+. +.+-+. ....+.|.-||+++.-+++
T Consensus 85 ~Fn~Y~eg~~f~fHvDgavr~~hp~~~~--~lrtdls~tlfl~DPedYdGGeLVv~dtYg~h~VklPAGdLVlypStS-- 160 (229)
T COG3128 85 LFNRYQEGDFFGFHVDGAVRSIHPGSGF--RLRTDLSCTLFLSDPEDYDGGELVVNDTYGNHRVKLPAGDLVLYPSTS-- 160 (229)
T ss_pred hhhhccCCCcccccccCcccccCCCCCc--eeEeeeeeeeecCCccccCCceEEEeccccceEEeccCCCEEEccccc--
Confidence 459999999999999986433 1 122 4443333433332 221111 1456778889999998876
Q ss_pred eeeccCCCCCc--ceeeee
Q 026678 217 CFHGECVLPGN--FIIMIW 233 (235)
Q Consensus 217 ~~H~VP~~~~~--~~~~~~ 233 (235)
.|.|..+... |.+.||
T Consensus 161 -lH~VtPVTRg~R~asffW 178 (229)
T COG3128 161 -LHEVTPVTRGERFASFFW 178 (229)
T ss_pred -ceeccccccCceEEEeee
Confidence 4777644444 445566
No 18
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=62.08 E-value=50 Score=29.12 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=50.6
Q ss_pred CCCCCCceEEeeecC---CCCCcCcccCCCCcCCCCCeEEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccce
Q 026678 141 GEEFQPEAAIVNYFG---LGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEAREC 217 (235)
Q Consensus 141 ~~~~~p~a~iVN~Y~---~Gd~lg~H~D~~E~~~~~PIvSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~ 217 (235)
..+|.+|+.+|.--. +|..+..|.|+.. ....-++.+.+.....|.++++ .+.++.||++++....-+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~r~~-~~~~~~i~~~~~G~~~~~~~~~-------~~~~~~g~~i~i~p~~~h~ 86 (290)
T PRK10572 15 LPGYSFNAHLVAGLTPIEAGGYLDFFIDRPL-GMKGYILNLTIRGQGVIFNGGR-------AFVCRPGDLLLFPPGEIHH 86 (290)
T ss_pred CCCCCcceeeeecccccccCCccceeeecCC-CccceEEEEEEeccEEEecCCe-------eEecCCCCEEEECCCCcee
Confidence 347788877764432 3566777888654 3455677888888888876543 5778999999998777555
Q ss_pred eeccC
Q 026678 218 FHGEC 222 (235)
Q Consensus 218 ~H~VP 222 (235)
++..|
T Consensus 87 ~~~~~ 91 (290)
T PRK10572 87 YGRHP 91 (290)
T ss_pred eccCC
Confidence 54444
No 19
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.95 E-value=40 Score=29.67 Aligned_cols=66 Identities=29% Similarity=0.432 Sum_probs=41.5
Q ss_pred CCCceEEeeecCCCCCcCcccCCCCcCCCCCe-EEEccCCce------EEEeeC-CCC-CCCCEEEEcCCCcEEEEc
Q 026678 144 FQPEAAIVNYFGLGDTLGGHLDDMEADWSKPI-VSMSLGCKA------IFLLGG-KSR-EDPPLAMFLRSGDAVLMA 211 (235)
Q Consensus 144 ~~p~a~iVN~Y~~Gd~lg~H~D~~E~~~~~PI-vSiSLG~~~------iF~~~~-~~~-~~~~~~l~L~sGDvlvM~ 211 (235)
.+|...|+ -|.+||---.|.|---+ +-=|+ |.|-|-.+. .|.+-- +.| ...+..+.|+.||-+|+.
T Consensus 122 ~RpTpLlL-qYgpgD~NcLHQDLYGe-lvFPLQvailLsePg~DfTGGEF~lvEQRPR~QSr~~vvpLrqG~g~vFa 196 (236)
T COG3826 122 VRPTPLLL-QYGPGDYNCLHQDLYGE-LVFPLQVAILLSEPGTDFTGGEFVLVEQRPRMQSRPTVVPLRQGDGVVFA 196 (236)
T ss_pred ccCCceeE-EecCCccchhhhhhhhc-eeeeeeEEEeccCCCCcccCceEEEEecccccccCCceeeccCCceEEEE
Confidence 45555554 57999999999997432 22343 444444332 354432 111 234789999999999996
No 20
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=58.66 E-value=41 Score=32.28 Aligned_cols=90 Identities=13% Similarity=0.249 Sum_probs=57.7
Q ss_pred CChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCCCCcCcccCCCCcCCCCCeEEEccCCceEEEeeCCCC-------
Q 026678 121 KIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSR------- 193 (235)
Q Consensus 121 ~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~~~~~PIvSiSLG~~~iF~~~~~~~------- 193 (235)
-|-+.+..|-+.+-. -..++-|-++|-|=.+|.++|.|.|.-. ++-|=.=..|.-.++....
T Consensus 98 ~w~p~v~~l~~~Frf-----lP~wr~ddiMIS~a~~GGgvg~H~D~YD------VfliQg~G~RRW~v~~~~~~~~~~~~ 166 (383)
T COG2850 98 HWHPEVAALMEPFRF-----LPDWRIDDIMISFAAPGGGVGPHFDQYD------VFLIQGQGRRRWRVGKKCNMSTLCPH 166 (383)
T ss_pred hcCHHHHHHHHHhcc-----CccccccceEEEEecCCCccCccccchh------eeEEeecccceeecCCcccccCcCCC
Confidence 344456666665421 1356778899998889999999999532 4444444445555543311
Q ss_pred --------CCCCEEEEcCCCcEEEEcccccceeeccCC
Q 026678 194 --------EDPPLAMFLRSGDAVLMAGEARECFHGECV 223 (235)
Q Consensus 194 --------~~~~~~l~L~sGDvlvM~G~sR~~~H~VP~ 223 (235)
.+......|++||+|.. +.|++-|||+-
T Consensus 167 ~d~~~~~~f~~~~d~vlepGDiLYi--Pp~~~H~gvae 202 (383)
T COG2850 167 PDLLILAPFEPDIDEVLEPGDILYI--PPGFPHYGVAE 202 (383)
T ss_pred cchhhcCCCCchhhhhcCCCceeec--CCCCCcCCccc
Confidence 11234568999999987 55777788885
No 21
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=57.23 E-value=16 Score=33.57 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=35.2
Q ss_pred ceEEeeecCCC---CCcCcccCCCCcCCCCCeEEEccCCceEEEeeCCC----------------CCCCCEEEEcCCCcE
Q 026678 147 EAAIVNYFGLG---DTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKS----------------REDPPLAMFLRSGDA 207 (235)
Q Consensus 147 ~a~iVN~Y~~G---d~lg~H~D~~E~~~~~PIvSiSLG~~~iF~~~~~~----------------~~~~~~~l~L~sGDv 207 (235)
-.|-+|.|-.. .++++|.|+.+ ++.|=+-......+.... ..+....+.|++||+
T Consensus 112 ~~~~~n~Y~tp~g~~g~~~H~D~~d------vfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~ 185 (319)
T PF08007_consen 112 CPVGANAYLTPPGSQGFGPHYDDHD------VFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDV 185 (319)
T ss_dssp S-EEEEEEEETSSBEESECEE-SSE------EEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-E
T ss_pred cccceEEEecCCCCCCccCEECCcc------cEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCE
Confidence 56778999643 48999999753 555666666666555410 013456899999999
Q ss_pred EEEc
Q 026678 208 VLMA 211 (235)
Q Consensus 208 lvM~ 211 (235)
|.|=
T Consensus 186 LYlP 189 (319)
T PF08007_consen 186 LYLP 189 (319)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 9985
No 22
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=33.58 E-value=33 Score=23.25 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=36.8
Q ss_pred cCCCCCcCcccCCCCcCCCCCeEEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccceeec
Q 026678 154 FGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220 (235)
Q Consensus 154 Y~~Gd~lg~H~D~~E~~~~~PIvSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~H~ 220 (235)
+.+|..+++|....+ .-+-+=+-.+..+.+++. .+.|+.||++++.....+.+..
T Consensus 5 ~~pG~~~~~h~H~~~-----~e~~~vl~G~~~~~~~~~-------~~~l~~Gd~~~i~~~~~H~~~n 59 (71)
T PF07883_consen 5 LPPGGSIPPHRHPGE-----DEFFYVLSGEGTLTVDGE-------RVELKPGDAIYIPPGVPHQVRN 59 (71)
T ss_dssp EETTEEEEEEEESSE-----EEEEEEEESEEEEEETTE-------EEEEETTEEEEEETTSEEEEEE
T ss_pred ECCCCCCCCEECCCC-----CEEEEEEECCEEEEEccE-------EeEccCCEEEEECCCCeEEEEE
Confidence 467788899996432 133344445566665432 7889999999999887665543
No 23
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=31.69 E-value=67 Score=26.92 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=30.0
Q ss_pred EEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccceee
Q 026678 176 VSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFH 219 (235)
Q Consensus 176 vSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~H 219 (235)
+.+=+..++.|.++.. ++.-+.|.++.||+|++-...++||.
T Consensus 95 vR~i~~G~g~Fdvr~~--~~~wiri~~e~GDli~vP~g~~HrF~ 136 (157)
T PF03079_consen 95 VRYIVDGSGYFDVRDG--DDVWIRILCEKGDLIVVPAGTYHRFT 136 (157)
T ss_dssp EEEEEECEEEEEEE-T--TCEEEEEEEETTCEEEE-TT--EEEE
T ss_pred EEEEeCcEEEEEEEcC--CCEEEEEEEcCCCEEecCCCCceeEE
Confidence 4566788999999853 34456699999999999888877774
No 24
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=31.23 E-value=1.6e+02 Score=26.89 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=61.2
Q ss_pred eeEeeeCceeeeC----CCcccCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCCCCcCcccCCCCcCCC
Q 026678 97 LRWCTLGLQFDWS----KRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWS 172 (235)
Q Consensus 97 lRW~tlG~~Ydw~----~~~Y~~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~~~~ 172 (235)
.||.+++-.|-|- .+.-....--+..|+.+..+.+++..+ .-+..++++.. +|-|++- ..
T Consensus 5 ~~~~~~~~Ny~YLl~~~~~~~~a~~vDP~~pe~v~~~~~~~~~~------~~~l~~Il~TH--------hH~DHsG--Gn 68 (265)
T KOG0813|consen 5 PRLPTLQDNYMYLLGDGDKTIDADLVDPAEPEYVIPSLKKLDDE------NRRLTAILTTH--------HHYDHSG--GN 68 (265)
T ss_pred ccccccCCceEEEEecccceeeeeeecCcchHHHHHHHHhhhhc------cCceeEEEecc--------ccccccC--cH
Confidence 3478888777773 222222222357788888888876533 23455665554 6677652 22
Q ss_pred CCeEEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccceeeccCCCCCcceeee
Q 026678 173 KPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECVLPGNFIIMI 232 (235)
Q Consensus 173 ~PIvSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~H~VP~~~~~~~~~~ 232 (235)
.-|..... ..++.+++.....+-++..|..||.+-.+|--=.+.|.=-=..|.|.+.+
T Consensus 69 ~~i~~~~~--~~~~v~g~~~~r~~~i~~~~~~~e~~~~~g~~v~~l~TPgHT~~hi~~~~ 126 (265)
T KOG0813|consen 69 EDIKREIP--YDIKVIGGADDRIPGITRGLKDGETVTVGGLEVRCLHTPGHTAGHICYYV 126 (265)
T ss_pred HHHHhhcc--CCcEEecCChhcCccccccCCCCcEEEECCEEEEEEeCCCccCCcEEEEe
Confidence 22433333 55666666311233445556666666666544334433223344444333
No 25
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=29.75 E-value=46 Score=23.55 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=18.0
Q ss_pred ceEEeeecCCCCCcCcccCCCCc
Q 026678 147 EAAIVNYFGLGDTLGGHLDDMEA 169 (235)
Q Consensus 147 ~a~iVN~Y~~Gd~lg~H~D~~E~ 169 (235)
...-..-|..|+.+++|+|....
T Consensus 11 ~~~~~~~~~~g~~~~~H~D~~~~ 33 (70)
T PF13661_consen 11 PNFRFYRYRRGDFFGWHVDADPS 33 (70)
T ss_pred cceeEEEcCCCCEeeeeEcCCcc
Confidence 34555678999999999998654
No 26
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=29.44 E-value=98 Score=24.17 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=30.0
Q ss_pred EEeeecCCC-CCcCcccCCCCc-CCCCCeEEEccCCc-eEEEeeCCCCCCCCEEEEcCCCcEEEEccccc
Q 026678 149 AIVNYFGLG-DTLGGHLDDMEA-DWSKPIVSMSLGCK-AIFLLGGKSREDPPLAMFLRSGDAVLMAGEAR 215 (235)
Q Consensus 149 ~iVN~Y~~G-d~lg~H~D~~E~-~~~~PIvSiSLG~~-~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR 215 (235)
..+.+|.+. .....+..+... ....|+.+|||-.+ |..-..-.+ ....+.|.+.+|+.++|...+.
T Consensus 36 ~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY~K-r~~VFrL~~~dg~e~Lfqa~~~ 104 (119)
T PF15410_consen 36 GQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDYTK-RKNVFRLRTADGSEYLFQASDE 104 (119)
T ss_dssp TEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTBTT-CSSEEEEE-TTS-EEEEE-SSH
T ss_pred CEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccccc-CCeEEEEEeCCCCEEEEECCCH
Confidence 346777775 333334443111 11256777887644 344333333 3667889999999999998763
No 27
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=29.17 E-value=48 Score=27.99 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=46.0
Q ss_pred eEEeeecCCCCCcCcccCCCCcCCCCCeEEEccCCceEEEeeCCC--------------------------------CCC
Q 026678 148 AAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKS--------------------------------RED 195 (235)
Q Consensus 148 a~iVN~Y~~Gd~lg~H~D~~E~~~~~PIvSiSLG~~~iF~~~~~~--------------------------------~~~ 195 (235)
..-+-.-..|..-.+|.|..+ -+..+=-|..+..++-+.. +..
T Consensus 132 ~~~l~ig~~gs~t~lH~D~~~-----n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~ 206 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDPSH-----NLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKA 206 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-SSE-----EEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG-
T ss_pred ccEEEEeCCCceeeeeECchh-----hhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccC
Confidence 333334455688999999732 2566666777776664320 001
Q ss_pred CCEEEEcCCCcEEEEcccccceeeccCCC-CC--cceeeee
Q 026678 196 PPLAMFLRSGDAVLMAGEARECFHGECVL-PG--NFIIMIW 233 (235)
Q Consensus 196 ~~~~l~L~sGDvlvM~G~sR~~~H~VP~~-~~--~~~~~~~ 233 (235)
.+..+.|+.||+|.+= ..|||.|--+ ++ +..+.+|
T Consensus 207 ~~~~~~l~pGD~LfiP---~gWwH~V~~~~~~~~sisvn~w 244 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIP---PGWWHQVENLSDDDLSISVNYW 244 (251)
T ss_dssp -EEEEEEETT-EEEE----TT-EEEEEESTTSSCEEEEEEE
T ss_pred ceeEEEECCCeEEEEC---CCCeEEEEEcCCCCeEEEEEEE
Confidence 4678999999999985 5799999877 33 5555555
No 28
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=27.20 E-value=3.3e+02 Score=24.70 Aligned_cols=32 Identities=9% Similarity=0.184 Sum_probs=21.1
Q ss_pred CEEEEcCCCcEEEEcccccceeecc-C-CCCCcceee
Q 026678 197 PLAMFLRSGDAVLMAGEARECFHGE-C-VLPGNFIIM 231 (235)
Q Consensus 197 ~~~l~L~sGDvlvM~G~sR~~~H~V-P-~~~~~~~~~ 231 (235)
.+.+.|+.||+++|.+-+ +||- | +.++..+.+
T Consensus 208 ~v~~~lkaGd~~~f~~~t---~HgS~~N~S~~~~R~~ 241 (288)
T TIGR01762 208 AVPMQMKAGQFIIFWSTL---MHASYPNSGESQMRMG 241 (288)
T ss_pred eeeeeeCCceEEEECCCc---eecCCCCCCCCceEEE
Confidence 468899999999998743 5654 3 333344444
No 29
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=26.62 E-value=4.2e+02 Score=22.85 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=52.5
Q ss_pred CChHHHHHHHHHHHhccCCCCCCCCCceEEeeec-CCCCCcCcccCCCCcCCCCCeEEEccCCceEEEeeCCCCCCCCEE
Q 026678 121 KIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYF-GLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLA 199 (235)
Q Consensus 121 ~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y-~~Gd~lg~H~D~~E~~~~~PIvSiSLG~~~iF~~~~~~~~~~~~~ 199 (235)
.|+.||.+=...+.-... ...-|.-.-.+|-.+ .+|.+..+|.|..|+ ++ +-|=.+....+.. +.....
T Consensus 8 n~~~Wieen~~~l~pPv~-n~~l~~~~d~~VmvvgGpn~r~d~H~~~tdE-----~F-yqleG~~~l~v~d---~g~~~~ 77 (177)
T PRK13264 8 NLHKWIEEHRHLLKPPVG-NKQIWQDSDFIVMVVGGPNARTDFHYDPGEE-----FF-YQLEGDMYLKVQE---DGKRRD 77 (177)
T ss_pred cHHHHHHhhHHHhCCCCC-CeeeEcCCCEEEEEEccCCcccccccCCCce-----EE-EEECCeEEEEEEc---CCceee
Confidence 678899887777643321 111222234566667 677899999976554 22 2222334444422 122357
Q ss_pred EEcCCCcEEEEccccccee
Q 026678 200 MFLRSGDAVLMAGEARECF 218 (235)
Q Consensus 200 l~L~sGDvlvM~G~sR~~~ 218 (235)
+.|+.||+++.-+.+++..
T Consensus 78 v~L~eGd~fllP~gvpHsP 96 (177)
T PRK13264 78 VPIREGEMFLLPPHVPHSP 96 (177)
T ss_pred EEECCCCEEEeCCCCCcCC
Confidence 8999999999988776544
No 30
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=24.80 E-value=3.3e+02 Score=21.03 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=45.2
Q ss_pred eecCCCCCcCcccCCCCcCCCCCeEEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccceeeccCCCC
Q 026678 152 NYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECVLP 225 (235)
Q Consensus 152 N~Y~~Gd~lg~H~D~~E~~~~~PIvSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~H~VP~~~ 225 (235)
=.+.+|..+.+|.-.. .....+=|-....|.+.+. ...|+.||++++-...++++-+++..+
T Consensus 48 v~~~~G~~~~~H~hp~-----~~~~~~Vl~G~~~~~~~g~-------~~~l~~Gd~i~ip~g~~H~~~a~~~~~ 109 (131)
T COG1917 48 VTFEPGAVIPWHTHPL-----GEQTIYVLEGEGTVQLEGE-------KKELKAGDVIIIPPGVVHGLKAVEDEP 109 (131)
T ss_pred EEECCCcccccccCCC-----cceEEEEEecEEEEEecCC-------ceEecCCCEEEECCCCeeeeccCCCCc
Confidence 3468899999998751 2355555667777777632 567999999999988888877766443
No 31
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=24.57 E-value=4.3e+02 Score=22.32 Aligned_cols=89 Identities=15% Similarity=0.098 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHHHhccCCCCCCCCCceEEeeec-CCCCCcCcccCCCCcCCCCCeEEEccCCceEEEeeCCCCCCCCEEE
Q 026678 122 IPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYF-GLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAM 200 (235)
Q Consensus 122 ~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y-~~Gd~lg~H~D~~E~~~~~PIvSiSLG~~~iF~~~~~~~~~~~~~l 200 (235)
|++||.+=...+..... ...-|.-...+|=.+ .+|.+--||.+..++ ++- -|=.+..+.+... .....+
T Consensus 3 ~~~Wi~en~~~l~pPv~-n~~l~~~~~~~v~~vgGpn~R~d~H~~~tdE-----~Fy-qleG~~~l~v~d~---g~~~~v 72 (159)
T TIGR03037 3 FKKWIDEHKHLLKPPVG-NQQIWQDSEFMVTVVGGPNARTDFHDDPGEE-----FFY-QLKGEMYLKVTEE---GKREDV 72 (159)
T ss_pred HHHHHHhhHHHhCCCCC-ceEeecCCcEEEEEeCCCCCCcccccCCCce-----EEE-EEcceEEEEEEcC---CcEEEE
Confidence 57788777766643221 111122224445555 677889999976543 222 2223344444432 234579
Q ss_pred EcCCCcEEEEcccccceeec
Q 026678 201 FLRSGDAVLMAGEARECFHG 220 (235)
Q Consensus 201 ~L~sGDvlvM~G~sR~~~H~ 220 (235)
.|+.||+++.-+...+...+
T Consensus 73 ~L~eGd~flvP~gvpHsP~r 92 (159)
T TIGR03037 73 PIREGDIFLLPPHVPHSPQR 92 (159)
T ss_pred EECCCCEEEeCCCCCccccc
Confidence 99999999998887665544
No 32
>KOG2511 consensus Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]
Probab=24.50 E-value=12 Score=35.61 Aligned_cols=33 Identities=21% Similarity=0.118 Sum_probs=28.9
Q ss_pred EEcCCCcEEEEcccccceeeccCCCC-Ccceeee
Q 026678 200 MFLRSGDAVLMAGEARECFHGECVLP-GNFIIMI 232 (235)
Q Consensus 200 l~L~sGDvlvM~G~sR~~~H~VP~~~-~~~~~~~ 232 (235)
+++.|||+.-.+.+.|.+||.|-|.| -+|-+|.
T Consensus 270 vR~DSGdl~~~skkvr~~y~~v~~~~K~~~~~m~ 303 (420)
T KOG2511|consen 270 VRQDSGDLAEYSKKVRKHYCDVERDPKPSKGIMY 303 (420)
T ss_pred eeccCCCHHHHHHHHHHHHHHhhccCCCcceEEE
Confidence 88999999999999999999999666 6676764
No 33
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=23.34 E-value=81 Score=20.05 Aligned_cols=42 Identities=17% Similarity=0.317 Sum_probs=19.1
Q ss_pred EEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccceeeccCCC
Q 026678 176 VSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECVL 224 (235)
Q Consensus 176 vSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~H~VP~~ 224 (235)
++++++...+|+|||...+. -...|+.+..-++.. |+-||..
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~------~~~~d~~~~d~~~~~-W~~~~~~ 47 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSG------SPLNDLWIFDIETNT-WTRLPSM 47 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-T------EE---EEEEETTTTE-EEE--SS
T ss_pred EEEEEeCCeEEEECCCCCCC------cccCCEEEEECCCCE-EEECCCC
Confidence 35556777889998865432 233466666655543 3444443
No 34
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=21.66 E-value=2e+02 Score=24.88 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=32.7
Q ss_pred EEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEccccccee
Q 026678 176 VSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECF 218 (235)
Q Consensus 176 vSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~ 218 (235)
|.+=+-...+|.+... +.....|.+.+||+|..-...|+|+
T Consensus 98 vRy~vaG~GiF~v~~~--d~~~~~i~c~~gDLI~vP~gi~HwF 138 (181)
T COG1791 98 VRYFVAGEGIFDVHSP--DGKVYQIRCEKGDLISVPPGIYHWF 138 (181)
T ss_pred EEEEEecceEEEEECC--CCcEEEEEEccCCEEecCCCceEEE
Confidence 4455567889999864 4577899999999999988888776
Done!