BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026679
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 6/204 (2%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
+ L+ KGH V +P ++ +SGS D SVRIWD++ C L P V F
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
++ G + + G +++D+ S G L+ D V +KFS +GK +L T +N
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
++ + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+ V
Sbjct: 218 DLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
G+ VV P + +A+
Sbjct: 278 LQGHTDVVISTACHPTENIIASAA 301
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 74
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 46/170 (27%)
Query: 6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQ 65
++ GH + V S+ SP + S S D ++IW
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------------------------ 53
Query: 66 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 125
GA YD G F+ + G + D+ +S+D ++ + + +
Sbjct: 54 ----------GA--------YD-GKFEK-TISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 126 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 175
+ D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 94 IWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
+ L+ KGH V +P ++ +SGS D SVRIWD++ C L P V F
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
++ G + + G +++D+ S G L+ D V +KFS +GK +L T +N
Sbjct: 180 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 236
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
+ + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+ V
Sbjct: 237 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 296
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
G+ VV P + +A+
Sbjct: 297 LQGHTDVVISTACHPTENIIASAA 320
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 93
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 9/172 (5%)
Query: 4 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL--RLRGRPTV 60
N L++ GH + V S+ SP + S S D ++IW + + G V
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 93
Query: 61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
A+ + A + +K++D S G L G C F+ ++ +
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSF 149
Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
+ ++ + D G +C +L + + F DG +VS S DG W+
Sbjct: 150 DESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
+ L+ KGH V +P ++ +SGS D SVRIWD++ C L P V F
Sbjct: 94 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 153
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
++ G + + G +++D+ S G L+ D V +KFS +GK +L T +N
Sbjct: 154 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 210
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
+ + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+ V
Sbjct: 211 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 270
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
G+ VV P + +A+
Sbjct: 271 LQGHTDVVISTACHPTENIIASAA 294
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 67
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 122
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 9/172 (5%)
Query: 4 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL--RLRGRPTV 60
N L++ GH + V S+ SP + S S D ++IW + + G V
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 67
Query: 61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
A+ + A + +K++D S G L G C F+ ++ +
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSF 123
Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
+ ++ + D G +C +L + + F DG +VS S DG W+
Sbjct: 124 DESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
+ L+ KGH V +P ++ +SGS D SVRIWD++ C L P V F
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
++ G + + G +++D+ S G L+ D V +KFS +GK +L T +N
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
+ + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+ V
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
G+ VV P + +A+
Sbjct: 281 LQGHTDVVISTACHPTENIIASAA 304
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 77
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 9/172 (5%)
Query: 4 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL--RLRGRPTV 60
N L++ GH + V S+ SP + S S D ++IW + + G V
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
A+ + A + +K++D S G L G C F+ ++ +
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSF 133
Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
+ ++ + D G +C +L + + F DG +VS S DG W+
Sbjct: 134 DESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
+ L+ KGH V +P ++ +SGS D SVRIWD++ C L P V F
Sbjct: 115 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 174
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
++ G + + G +++D+ S G L+ D V +KFS +GK +L T +N
Sbjct: 175 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 231
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
+ + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+ V
Sbjct: 232 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 291
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
G+ VV P + +A+
Sbjct: 292 LQGHTDVVISTACHPTENIIASAA 315
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 88
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 143
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 9/172 (5%)
Query: 4 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL--RLRGRPTV 60
N L++ GH + V S+ SP + S S D ++IW + + G V
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 88
Query: 61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
A+ + A + +K++D S G L G C F+ ++ +
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSF 144
Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
+ ++ + D G +C +L + + F DG +VS S DG W+
Sbjct: 145 DESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
+ L+ KGH V +P ++ +SGS D SVRIWD++ C L P V F
Sbjct: 99 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 158
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
++ G + + G +++D+ S G L+ D V +KFS +GK +L T +N
Sbjct: 159 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 215
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
+ + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+ V
Sbjct: 216 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 275
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
G+ VV P + +A+
Sbjct: 276 LQGHTDVVISTACHPTENIIASAA 299
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 72
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 127
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 9/172 (5%)
Query: 4 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL--RLRGRPTV 60
N L++ GH + V S+ SP + S S D ++IW + + G V
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 72
Query: 61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
A+ + A + +K++D S G L G C F+ ++ +
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSF 128
Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
+ ++ + D G +C +L + + F DG +VS S DG W+
Sbjct: 129 DESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
+ L+ KGH V +P ++ +SGS D SVRIWD++ C L P V F
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
++ G + + G +++D+ S G L+ D V +KFS +GK +L T +N
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
+ + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+ V
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
G+ VV P + +A+
Sbjct: 278 LQGHTDVVISTACHPTENIIASAA 301
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 74
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 46/170 (27%)
Query: 6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQ 65
++ GH + V S+ SP + S S D ++IW
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------------------------ 53
Query: 66 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 125
GA YD G F+ + G + D+ +S+D ++ + + +
Sbjct: 54 ----------GA--------YD-GKFEK-TISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 126 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 175
+ D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 94 IWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
+ L+ KGH V +P ++ +SGS D SVRIWD++ C L P V F
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
++ G + + G +++D+ S G L+ D V +KFS +GK +L T +N
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
+ + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+ V
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
G+ VV P + +A+
Sbjct: 281 LQGHTDVVISTACHPTENIIASAA 304
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 77
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 9/172 (5%)
Query: 4 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL--RLRGRPTV 60
N L++ GH + V S+ SP + S S D ++IW + + G V
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
A+ + A + +K++D S G L G C F+ ++ +
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSF 133
Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
+ ++ + D G +C +L + + F DG +VS S DG W+
Sbjct: 134 DESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
+ L+ KGH V +P ++ +SGS D SVRIWD++ C L P V F
Sbjct: 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
++ G + + G +++D+ S G L+ D V +KFS +GK +L T +N
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
+ + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+ V
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
G+ VV P + +A+
Sbjct: 275 LQGHTDVVISTACHPTENIIASAA 298
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 71
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 9/172 (5%)
Query: 4 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL--RLRGRPTV 60
N L++ GH + V S+ SP + S S D ++IW + + G V
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
A+ + A + +K++D S G L G C F+ ++ +
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSF 127
Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
+ ++ + D G +C +L + + F DG +VS S DG W+
Sbjct: 128 DESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
+ L+ KGH V +P ++ +SGS D SVRIWD++ C L P V F
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
++ G + + G +++D+ S G L+ D V +KFS +GK +L T +N
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
+ + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+ V
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
G+ VV P + +A+
Sbjct: 281 LQGHTDVVISTACHPTENIIASAA 304
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 77
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 9/172 (5%)
Query: 4 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL--RLRGRPTV 60
N L++ GH + V S+ SP + S S D ++IW + + G V
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
A+ + A + +K++D S G L G C F+ ++ +
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSF 133
Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
+ ++ + D G +C +L + + F DG +VS S DG W+
Sbjct: 134 DESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
+ L+ KGH V +P ++ +SGS D SVRIWD++ C L P V F
Sbjct: 122 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 181
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
++ G + + G +++D+ S G L+ D V +KFS +GK +L T +N
Sbjct: 182 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 238
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
+ + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+ V
Sbjct: 239 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 298
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
G+ VV P + +A+
Sbjct: 299 LQGHTDVVISTACHPTENIIASAA 322
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 95
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 150
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 9/172 (5%)
Query: 4 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL--RLRGRPTV 60
N L++ GH + V S+ SP + S S D ++IW + + G V
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 95
Query: 61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
A+ + A + +K++D S G L G C F+ ++ +
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSF 151
Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
+ ++ + D G +C +L + + F DG +VS S DG W+
Sbjct: 152 DESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
+ L+ KGH V +P ++ +SGS D SVRIWD++ C L P V F
Sbjct: 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
++ G + + G +++D+ S G L+ D V +KFS +GK +L T +N
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
+ + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+ V
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
G+ VV P + +A+
Sbjct: 275 LQGHTDVVISTACHPTENIIASAA 298
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 71
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 9/172 (5%)
Query: 4 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL--RLRGRPTV 60
N L++ GH + V S+ SP + S S D ++IW + + G V
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
A+ + A + +K++D S G L G C F+ ++ +
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSF 127
Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
+ ++ + D G +C +L + + F DG +VS S DG W+
Sbjct: 128 DESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
+ L+ KGH V +P ++ +SGS D SVRIWD++ C L P V F
Sbjct: 103 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 162
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
++ G + + G +++D+ S G L+ D V +KFS +GK +L T +N
Sbjct: 163 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 219
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
+ + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+ V
Sbjct: 220 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 279
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
G+ VV P + +A+
Sbjct: 280 LQGHTDVVISTACHPTENIIASAA 303
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 76
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 131
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 9/172 (5%)
Query: 4 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL--RLRGRPTV 60
N L++ GH + V S+ SP + S S D ++IW + + G V
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 76
Query: 61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
A+ + A + +K++D S G L G C F+ ++ +
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSF 132
Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
+ ++ + D G +C +L + + F DG +VS S DG W+
Sbjct: 133 DESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
+ L+ KGH V +P ++ +SGS D SVRIWD++ C L P V F
Sbjct: 97 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 156
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
++ G + + G +++D+ S G L+ D V +KFS +GK +L T +N
Sbjct: 157 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 213
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
+ + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+ V
Sbjct: 214 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 273
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
G+ VV P + +A+
Sbjct: 274 LQGHTDVVISTACHPTENIIASAA 297
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 70
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 125
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 9/172 (5%)
Query: 4 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL--RLRGRPTV 60
N L++ GH + V S+ SP + S S D ++IW + + G V
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 70
Query: 61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
A+ + A + +K++D S G L G C F+ ++ +
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSF 126
Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
+ ++ + D G +C +L + + F DG +VS S DG W+
Sbjct: 127 DESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
+ L+ KGH V +P ++ +SGS D SVRIWD++ C L P V F
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
++ G + + G +++D+ S G L+ D V +KFS +GK +L T +N
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
+ + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+ V
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
G+ VV P + +A+
Sbjct: 278 LQGHTDVVISTACHPTENIIASAA 301
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 74
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 9/172 (5%)
Query: 4 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL--RLRGRPTV 60
N L++ GH + V S+ SP + S S D ++IW + + G V
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
A+ + A + +K++D S G L G C F+ ++ +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSF 130
Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
+ ++ + D G +C +L + + F DG +VS S DG W+
Sbjct: 131 DESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
+ L+ KGH V +P ++ +SGS D SVRIWD++ C L P V F
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
++ G + + G +++D+ S G L+ D V +KFS +GK +L T +N
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
+ + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+ V
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
G+ VV P + +A+
Sbjct: 278 LQGHTDVVISTACHPTENIIASAA 301
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 74
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 47/173 (27%)
Query: 4 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAF 62
N L++ GH + V S+ SP + S S D ++IW
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-------------------- 54
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
+YD G F+ + G + D+ +S+D ++ + +
Sbjct: 55 ----------------------AYD-GKFEK-TISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 175
+ + D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 91 TLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
+ L+ KGH V +P ++ +SGS D SVRIWD++ C L P V F
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
++ G + + G +++D+ S G L+ D V +KFS +GK +L T +N
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
+ + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+ V
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
G+ VV P + +A+
Sbjct: 278 LQGHTDVVISTACHPTENIIASAA 301
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 74
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 9/172 (5%)
Query: 4 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL--RLRGRPTV 60
N L++ GH + V S+ SP + + S D ++IW + + G V
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
A+ + A + +K++D S G L G C F+ ++ +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSF 130
Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
+ ++ + D G +C +L + + F DG +VS S DG W+
Sbjct: 131 DESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 35/206 (16%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR-GRPTVAFD 63
+I+ +GH++ + SL P D +SGS D +VRIWDLR C L + G TVA
Sbjct: 156 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 215
Query: 64 Q-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV----------GGDTAEVCDIKFSNDG 112
G A A++++DS + FLV G V + F+ DG
Sbjct: 216 PGDGKYIAAGSLDRAVRVWDSET-------GFLVERLDSENESGTGHKDSVYSVVFTRDG 268
Query: 113 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT-EATF------------TPDGQYV 159
+S++ + + ++ + + + S +PN+ T E T+ T + +Y+
Sbjct: 269 QSVVSGSLDRSVKLWNLQNANNK---SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 325
Query: 160 VSGSGDGTLHAWNINTRNEVACWNGN 185
+SGS D + W+ + N + G+
Sbjct: 326 LSGSKDRGVLFWDKKSGNPLLMLQGH 351
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 17/122 (13%)
Query: 100 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE---------- 149
T+ VC +KFSNDG+ L T N V G S + + N + E
Sbjct: 64 TSVVCCVKFSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 150 ------ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA 203
F+PDG+++ +G+ D + W+I R V G+ + L + P V+
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 182
Query: 204 AS 205
S
Sbjct: 183 GS 184
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)
Query: 17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQ--QGLVFAVAME 74
+ S+C SP +G+ D +RIWD+ IL+ + + D G
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 75 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 134
++++D R+ + G T V DGK + + + + V D+
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVS----PGDGKYIAAGSLDRAVRVWDS----- 236
Query: 135 RCGFSLEPSPNTNTEAT----------FTPDGQYVVSGSGDGTLHAWNINTRN 177
GF +E + N T FT DGQ VVSGS D ++ WN+ N
Sbjct: 237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 15/176 (8%)
Query: 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL----RLRGRP 58
+ ++L+ GH V + SP + S S D +V++W+ Q + +RG
Sbjct: 46 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG-- 103
Query: 59 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 118
VAF G A A + +KL++ G L G ++ V + FS DG+++
Sbjct: 104 -VAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVWGVAFSPDGQTIASA 157
Query: 119 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 174
+ + + + + G + +L ++ F+PDGQ + S S D T+ WN N
Sbjct: 158 SDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 210
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 15/174 (8%)
Query: 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL----RLRGRP 58
+ ++L+ GH V + SP + + S S D +V++W+ Q + +RG
Sbjct: 415 NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG-- 472
Query: 59 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 118
VAF G A A + +KL++ G L G ++ V + FS DG+++
Sbjct: 473 -VAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVRGVAFSPDGQTIASA 526
Query: 119 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
+ + + + + G + +L ++ F+PDGQ + S S D T+ WN
Sbjct: 527 SDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 15/176 (8%)
Query: 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--- 59
+ ++L+ GH V + SP + S S D +V++W+ Q L G +
Sbjct: 87 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ---TLTGHSSSVW 143
Query: 60 -VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 118
VAF G A A + +KL++ G L G ++ V + FS DG+++
Sbjct: 144 GVAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVWGVAFSPDGQTIASA 198
Query: 119 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 174
+ + + + + G + +L ++ F+PDGQ + S S D T+ WN N
Sbjct: 199 SDDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 251
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 15/176 (8%)
Query: 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--- 59
+ ++L+ GH V + SP + S S D +V++W+ Q L G +
Sbjct: 210 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ---TLTGHSSSVN 266
Query: 60 -VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 118
VAF G A A + +KL++ G L G ++ V + FS DG+++
Sbjct: 267 GVAFRPDGQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVWGVAFSPDGQTIASA 321
Query: 119 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 174
+ + + + + G + L ++ F+PDGQ + S S D T+ WN N
Sbjct: 322 SDDKTVKLWNRNGQHLQT---LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 374
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 15/179 (8%)
Query: 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL----RLRGRP 58
+ ++L+ GH V + SP + S S D +V++W+ Q + +RG
Sbjct: 169 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG-- 226
Query: 59 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 118
VAF G A A + +KL++ G L G ++ V + F DG+++
Sbjct: 227 -VAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVNGVAFRPDGQTIASA 280
Query: 119 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 177
+ + + + + G + +L ++ F+PDGQ + S S D T+ WN N ++
Sbjct: 281 SDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH 336
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 76/176 (43%), Gaps = 15/176 (8%)
Query: 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--- 59
+ ++L+ GH V + P + S S D +V++W+ Q L G +
Sbjct: 251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQ---TLTGHSSSVW 307
Query: 60 -VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 118
VAF G A A + +KL +++ + G ++ V + FS DG+++
Sbjct: 308 GVAFSPDGQTIASASDDKTVKL-----WNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASA 362
Query: 119 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 174
+ + + + + G + +L ++ F+PDGQ + S S D T+ WN N
Sbjct: 363 SDDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 15/172 (8%)
Query: 7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL----RLRGRPTVAF 62
L+ GH V + SP + S S D +V++W+ Q + +RG VAF
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG---VAF 393
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
G A A + +KL++ G L G ++ V + FS D +++ + +
Sbjct: 394 SPDGQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVWGVAFSPDDQTIASASDDK 448
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 174
+ + + G + +L ++ F+PDGQ + S S D T+ WN N
Sbjct: 449 TVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 497
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 15/176 (8%)
Query: 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--- 59
+ ++L+ GH V + SP + S S D +V++W+ Q L G +
Sbjct: 374 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ---TLTGHSSSVW 430
Query: 60 -VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 118
VAF A A + +KL++ G L G ++ V + FS DG+++
Sbjct: 431 GVAFSPDDQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVRGVAFSPDGQTIASA 485
Query: 119 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 174
+ + + + + G + +L ++ F+PDGQ + S S D T+ WN N
Sbjct: 486 SDDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 15/169 (8%)
Query: 10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAFDQQ 65
+ H V + SP + S S D +V++W+ Q L G + VAF
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ---TLTGHSSSVWGVAFSPD 68
Query: 66 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 125
G A A + +KL++ G L G ++ V + FS DG+++ + + +
Sbjct: 69 GQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVK 123
Query: 126 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 174
+ + G + +L ++ F+PDGQ + S S D T+ WN N
Sbjct: 124 LWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 169
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 17/181 (9%)
Query: 12 GHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGRP----TVAFDQQG 66
GH V+SL ++ +N + F+SGS D +VR+WDLR+ + + + G +V F G
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-RAVRTYHGHEGDINSVKFFPDG 261
Query: 67 LVFAVAMEAGAIKLFDSRS------YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
F + G +LFD R+ Y++ P + V + FS G+ + +
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN---DNELPIVTSVAFSISGRLLFAGYS 318
Query: 121 NNNIYVLDAYGGEKRCGF-SLEPSPNTNTEAT-FTPDGQYVVSGSGDGTLHAWNINTRNE 178
N + YV D E +L+ S + DG + +GS D L W + +
Sbjct: 319 NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK 378
Query: 179 V 179
+
Sbjct: 379 I 379
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 15/211 (7%)
Query: 8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV---AFDQ 64
R +GH +V SL +P + +S S D + +W+ + ++L P V AF
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC-PWVMECAFAP 118
Query: 65 QGLVFAVAMEAGAIKLFD-SRSYDKG---PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
G A A +F+ S D+ P L G ++ D ++ L+T +
Sbjct: 119 NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLT-GHKGYASSCQYVPDQETRLITGS 177
Query: 121 NNNIYVL-DAYGGEKRCGFSLE-PSPNTNTEATFTP---DGQYVVSGSGDGTLHAWNIN- 174
+ VL D G++ F E PS +T + + + +SGS D T+ W++
Sbjct: 178 GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI 237
Query: 175 TRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
T V ++G+ G + +K+ P F S
Sbjct: 238 TSRAVRTYHGHEGDINSVKFFPDGQRFGTGS 268
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR 44
+R +R + GH+ + S+ P F +GS D + R++D+R
Sbjct: 239 SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 152 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWN 183
F PDGQ +GS DGT +++ T +++ +N
Sbjct: 257 FFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 12/165 (7%)
Query: 13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFA 70
H V+SL ++P F+SG+ D S ++WD+R C+ + F G FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71 VAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 127
+ +LFD R+ + D + G + + FS G+ +L + N V
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
DA + R G L N + T DG V +GS D L WN
Sbjct: 298 DALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Query: 98 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 157
G A++ + + D + +L + + + + D+Y K L S + P G
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--CAYAPSGN 110
Query: 158 YVVSGSGDGTLHAWNINTRN-------EVACWNGNIGVVACLKW 194
YV G D +N+ TR E+A G+ G ++C ++
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELA---GHTGYLSCCRF 151
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 182
+IY L G R L + F D Q +V+ SGD T W+I T + +
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF 180
Query: 183 NGNIGVVACLKWAPRRAMFVAAS 205
G+ G V L AP +FV+ +
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGA 203
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 12/165 (7%)
Query: 13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFA 70
H V+SL ++P F+SG+ D S ++WD+R C+ + F G FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71 VAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 127
+ +LFD R+ + D + G + + FS G+ +L + N V
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
DA + R G L N + T DG V +GS D L WN
Sbjct: 298 DALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Query: 98 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 157
G A++ + + D + ++ + + + + D+Y K L S + P G
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--CAYAPSGN 110
Query: 158 YVVSGSGDGTLHAWNINTRN-------EVACWNGNIGVVACLKW 194
YV G D +N+ TR E+A G+ G ++C ++
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELA---GHTGYLSCCRF 151
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 182
+IY L G R L + F D Q +V+ SGD T W+I T + +
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF 180
Query: 183 NGNIGVVACLKWAPRRAMFVAAS 205
G+ G V L AP +FV+ +
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGA 203
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 12/165 (7%)
Query: 13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFA 70
H V+SL ++P F+SG+ D S ++WD+R C+ + F G FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71 VAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 127
+ +LFD R+ + D + G + + FS G+ +L + N V
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
DA + R G L N + T DG V +GS D L WN
Sbjct: 298 DALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Query: 98 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 157
G A++ + + D + ++ + + + + D+Y K L S + P G
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--CAYAPSGN 110
Query: 158 YVVSGSGDGTLHAWNINTRN-------EVACWNGNIGVVACLKW 194
YV G D +N+ TR E+A G+ G ++C ++
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELA---GHTGYLSCCRF 151
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 182
+IY L G R L + F D Q +V+ SGD T W+I T + +
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF 180
Query: 183 NGNIGVVACLKWAPRRAMFVAAS 205
G+ G V L AP +FV+ +
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGA 203
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 12/165 (7%)
Query: 13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFA 70
H V+SL ++P F+SG+ D S ++WD+R C+ + F G FA
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 71 VAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 127
+ +LFD R+ + D + G + + FS G+ +L + N V
Sbjct: 254 TGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDDFNCNVW 308
Query: 128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
DA + R G L N + T DG V +GS D L WN
Sbjct: 309 DALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Query: 98 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 157
G A++ + + D + ++ + + + + D+Y K L S + P G
Sbjct: 64 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--CAYAPSGN 121
Query: 158 YVVSGSGDGTLHAWNINTRN-------EVACWNGNIGVVACLKW 194
YV G D +N+ TR E+A G+ G ++C ++
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRVSRELA---GHTGYLSCCRF 162
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 182
+IY L G R L + F D Q +V+ SGD T W+I T + +
Sbjct: 133 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF 191
Query: 183 NGNIGVVACLKWAPRRAMFVAAS 205
G+ G V L AP +FV+ +
Sbjct: 192 TGHTGDVMSLSLAPDTRLFVSGA 214
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 12/165 (7%)
Query: 13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFA 70
H V+SL ++P F+SG+ D S ++WD+R C+ + F G FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71 VAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 127
+ +LFD R+ + D + G + + FS G+ +L + N V
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
DA + R G L N + T DG V +GS D L WN
Sbjct: 298 DALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Query: 98 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 157
G A++ + + D + +L + + + + D+Y K L S + P G
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--CAYAPSGN 110
Query: 158 YVVSGSGDGTLHAWNINTRN-------EVACWNGNIGVVACLKW 194
YV G D +N+ TR E+A G+ G ++C ++
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELA---GHTGYLSCCRF 151
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 182
+IY L G R L + F D Q +V+ SGD T W+I T + +
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF 180
Query: 183 NGNIGVVACLKWAPRRAMFVAAS 205
G+ G V L AP +FV+ +
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGA 203
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 12/196 (6%)
Query: 10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP----TVAFDQQ 65
+GH+ V+S+ +S S SLD +R+WDL N Q I + P T+AF
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE-NGKQ-IKSIDAGPVDAWTLAFSPD 133
Query: 66 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 125
A G + +F S K + + + I +S DGK + + I
Sbjct: 134 SQYLATGTHVGKVNIFGVESGKK----EYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 126 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN 185
+ D G + +LE TF+PD Q +V+ S DG + +++ N +G+
Sbjct: 190 IFDIATG--KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247
Query: 186 IGVVACLKWAPRRAMF 201
V + + P F
Sbjct: 248 ASWVLNVAFCPDDTHF 263
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 22/190 (11%)
Query: 26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFD-QQGLVFAVAMEAGA-IKLF 81
+++ ++GSLD V++W R L G V+ D L A + A I+L+
Sbjct: 48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW 107
Query: 82 D------SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR 135
D +S D GP D + + FS D + + T + + G+K
Sbjct: 108 DLENGKQIKSIDAGPVDAWT----------LAFSPDSQYLATGTHVGKVNIFGVESGKKE 157
Query: 136 CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA 195
+SL+ ++PDG+Y+ SG+ DG ++ ++I T + G+ + L ++
Sbjct: 158 --YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS 215
Query: 196 PRRAMFVAAS 205
P + V AS
Sbjct: 216 PDSQLLVTAS 225
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL 52
++L +GH + SL SP + ++ S D ++I+D++ G L
Sbjct: 197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL 244
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 20/177 (11%)
Query: 5 RILRYFKGHKERVISLCMSP--VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TV 60
++L+ F GH V+ L ++P ++F+SG D +WD+R C +V
Sbjct: 187 QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSV 246
Query: 61 AFDQQGLVFAVAMEAGAIKLFDSRS------YDKGPFDTFLVGGDTAEVCDIKFSNDGKS 114
+ G FA + +L+D R+ Y K ++ + G + + FS G+
Sbjct: 247 RYYPSGDAFASGSDDATCRLYDLRADREVAIYSK---ESIIFGASS-----VDFSLSGRL 298
Query: 115 MLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW 171
+ + I V D G + L N + +PDG SGS D TL W
Sbjct: 299 LFAGYNDYTINVWDVLKGSRVS--ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 139 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP 196
S+ N + +FT +++ SGDGT W++ + + ++G+ V CL AP
Sbjct: 149 SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 206
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 24/197 (12%)
Query: 10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGL 67
GH+ V + PV +S S D ++++WD + L+ ++FD G
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 68 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI--- 124
+ A IKL+D + ++ + G V + +G ++ + + I
Sbjct: 164 LLASCSADMTIKLWDFQGFEC----IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 125 -----YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 179
Y + + G + + P+ DG + S S D T+ W + T+
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQ----------DGTLIASCSNDQTVRVWVVATKECK 269
Query: 180 ACWNGNIGVVACLKWAP 196
A + VV C+ WAP
Sbjct: 270 AELREHRHVVECISWAP 286
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 23/220 (10%)
Query: 7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC-------QGILRLRGRP- 58
+R GH V S+ + P D +S S D ++++W+++ C + +R+ RP
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM-VRPN 243
Query: 59 -------TVAFDQQGLVFAVAMEAGAIKLFDSRSYDK----GPFDTFLVGGDTAEVCDIK 107
+ + DQ V+ VA + +L + R + P ++ + K
Sbjct: 244 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 303
Query: 108 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 167
G +L + + I + D G C +L N F G++++S + D T
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDVSTG--MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361
Query: 168 LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSV 207
L W+ + + N + V L + + A +V SV
Sbjct: 362 LRVWDYKNKRCMKTLNAHEHFVTSLDFH-KTAPYVVTGSV 400
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 68/188 (36%), Gaps = 28/188 (14%)
Query: 7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR----------- 55
++ F GH+E V + + S S D +VR+W + C+ LR
Sbjct: 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 286
Query: 56 -----------GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 104
G T + G IK++D + G LVG D V
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST---GMCLMTLVGHDNW-VR 342
Query: 105 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 164
+ F + GK +L + + V D KRC +L + T F YVV+GS
Sbjct: 343 GVLFHSGGKFILSCADDKTLRVWDYKN--KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400
Query: 165 DGTLHAWN 172
D T+ W
Sbjct: 401 DQTVKVWE 408
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR 44
+ R ++ H+ V SL ++GS+D +V++W+ R
Sbjct: 369 NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 15/195 (7%)
Query: 21 CMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKL 80
C+ + +SG D++++IWD C+ IL + V +++
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRV 197
Query: 81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE----KRC 136
+D + G L+ A V ++F+N M+ + + +I V D +R
Sbjct: 198 WD---VNTGEMLNTLIHHCEA-VLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRV 251
Query: 137 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP 196
+ N D +Y+VS SGD T+ WN +T V NG+ +ACL++
Sbjct: 252 LVGHRAAVNV-----VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD 306
Query: 197 RRAMFVAASSVLSFW 211
R + ++ + + W
Sbjct: 307 RLVVSGSSDNTIRLW 321
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 25/212 (11%)
Query: 8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR--------VNACQGILRLRGRPT 59
R GH V LC+ ++GS D +VR+WD+ ++ C+ +L LR
Sbjct: 167 RILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--- 221
Query: 60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 119
G++ + + +I ++D S LVG A V + F D K ++ +
Sbjct: 222 ----NNGMMVTCSKDR-SIAVWDMASPTDITLRRVLVG-HRAAVNVVDF--DDKYIVSAS 273
Query: 120 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 179
+ I V + C F + + A + VVSGS D T+ W+I +
Sbjct: 274 GDRTIKVWNT----STCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 329
Query: 180 ACWNGNIGVVACLKWAPRRAMFVAASSVLSFW 211
G+ +V C+++ +R + A + W
Sbjct: 330 RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW 361
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 155 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPN 214
D Q +VSG D T+ W+ NT G+ G V CL++ R + ++ S + W N
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 201
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDL 43
LR +GH+E V C+ N +SG+ D +++WDL
Sbjct: 329 LRVLEGHEELV--RCIRFDNKRIVSGAYDGKIKVWDL 363
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 69/170 (40%), Gaps = 10/170 (5%)
Query: 13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP----TVAFDQQGLV 68
H + V C S S D +++++ + + +L ++ AF
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVF--KAETGEKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 69 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 128
A +K++DS + T+ + C F+N +LL T +N+ ++
Sbjct: 672 IATCSADKKVKIWDSAT--GKLVHTYDEHSEQVNCC--HFTNKSNHLLLATGSNDFFLKL 727
Query: 129 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178
+K C ++ N+ F+PD + + S S DGTL W++ + NE
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 25/177 (14%)
Query: 11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQ-QGLVF 69
+GH V + SP SF++ S D ++R+W+ + + L+ V F + + +V
Sbjct: 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 938
Query: 70 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC------DIKFSN-DGKSMLLTTTNN 122
AV G ++L ++ G D +L + C + F + DG ++ NN
Sbjct: 939 AVDNIRG-LQLIAGKT---GQID-YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 993
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 179
++ + G K+ ++ FT DG+ ++S S D + WN T + V
Sbjct: 994 RVF--SSGVGHKKAVRHIQ----------FTADGKTLISSSEDSVIQVWNWQTGDYV 1038
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 87/221 (39%), Gaps = 29/221 (13%)
Query: 5 RILRYFKGHKERVISLCMSPVNDS----FMSGSLDHSVRIWDLRVNACQGIL--RLRGRP 58
+++ + H E+V C N S +GS D +++WDL C+ +
Sbjct: 690 KLVHTYDEHSEQVN--CCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 747
Query: 59 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT----FLVGGDTAEVCDI-----KFS 109
F + A G ++L+D RS ++ FL D E ++ +S
Sbjct: 748 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS 807
Query: 110 NDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT-----FTPDGQYVVSGSG 164
DG +++ N + + D + L +T +T F+P V
Sbjct: 808 ADGDKIIVAA-KNKVLLFDIHTS------GLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 860
Query: 165 DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
+ WNI++R +VA G++ V + ++P + F+ AS
Sbjct: 861 QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS 901
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
Query: 108 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 167
FS DG+ + + + V A GEK ++ + F+ D Y+ + S D
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKL--LDIKAHEDEVLCCAFSSDDSYIATCSADKK 680
Query: 168 LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWI 212
+ W+ T V ++ + V C + + + A+ F++
Sbjct: 681 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 10/172 (5%)
Query: 11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP----TVAFDQQG 66
+ H + V C S S D +++++ + + +L ++ AF
Sbjct: 619 RPHTDAVYHACFSQDGQRIASCGADKTLQVF--KAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 67 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 126
A +K++DS + T+ + C F+N +LL T +N+ ++
Sbjct: 677 SYIATCSADKKVKIWDSAT--GKLVHTYDEHSEQVNCC--HFTNKSNHLLLATGSNDFFL 732
Query: 127 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178
+K C ++ N+ F+PD + + S S DGTL W++ + NE
Sbjct: 733 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 784
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 25/177 (14%)
Query: 11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQ-QGLVF 69
+GH V + SP SF++ S D ++R+W+ + + L+ V F + + +V
Sbjct: 886 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 945
Query: 70 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC------DIKFSN-DGKSMLLTTTNN 122
AV G ++L ++ G D +L + C + F + DG ++ NN
Sbjct: 946 AVDNIRG-LQLIAGKT---GQID-YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 1000
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 179
++ + G K+ ++ FT DG+ ++S S D + WN T + V
Sbjct: 1001 RVF--SSGVGHKKAVRHIQ----------FTADGKTLISSSEDSVIQVWNWQTGDYV 1045
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 87/221 (39%), Gaps = 29/221 (13%)
Query: 5 RILRYFKGHKERVISLCMSPVNDS----FMSGSLDHSVRIWDLRVNACQGIL--RLRGRP 58
+++ + H E+V C N S +GS D +++WDL C+ +
Sbjct: 697 KLVHTYDEHSEQVN--CCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 754
Query: 59 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT----FLVGGDTAEVCDI-----KFS 109
F + A G ++L+D RS ++ FL D E ++ +S
Sbjct: 755 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS 814
Query: 110 NDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT-----FTPDGQYVVSGSG 164
DG +++ N + + D + L +T +T F+P V
Sbjct: 815 ADGDKIIVAA-KNKVLLFDIHTS------GLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 867
Query: 165 DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
+ WNI++R +VA G++ V + ++P + F+ AS
Sbjct: 868 QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS 908
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
Query: 108 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 167
FS DG+ + + + V A GEK ++ + F+ D Y+ + S D
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKL--LDIKAHEDEVLCCAFSSDDSYIATCSADKK 687
Query: 168 LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWI 212
+ W+ T V ++ + V C + + + A+ F++
Sbjct: 688 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 9/170 (5%)
Query: 8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG--ILRLRGRPTVAFDQQ 65
R +GH V + +S + +S S DHS+R+W+L+ CQ + + +VAF
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 66 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLLTTTNNN 123
A+++++ + T G T V ++FS D ++ +N
Sbjct: 121 NRQIVSGGRDNALRVWNVKGE---CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 124 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 173
+ V D G R L+ N T T +PDG S DG W++
Sbjct: 178 VKVWDLATG--RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 7/127 (5%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAF 62
R++ KGH V S+ +SP S D R+WDL + G P + F
Sbjct: 187 RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM-AAGAPINQICF 245
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD---TAEVCDIKFSNDGKSMLLTT 119
A E G I++FD + D G E I +S DG ++
Sbjct: 246 SPNRYWMCAATEKG-IRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGY 304
Query: 120 TNNNIYV 126
T+N I V
Sbjct: 305 TDNVIRV 311
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 80/210 (38%), Gaps = 51/210 (24%)
Query: 8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGL 67
+ KGH + VI+ C+ + +SGS D+++++W C L G
Sbjct: 112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL---------VGHTGG 161
Query: 68 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 127
V++ M D ++ G +T+ + V
Sbjct: 162 VWSSQMR-----------------DNIIISG--------------------STDRTLKVW 184
Query: 128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG 187
+A GE C +L +T+T + VVSGS D TL W+I T + G++
Sbjct: 185 NAETGE--CIHTL--YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA 240
Query: 188 VVACLKWAPRRAMFVAASSVLSFWIPNPSS 217
V C+++ RR + A ++ W P +
Sbjct: 241 AVRCVQYDGRRVVSGAYDFMVKVWDPETET 270
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQG 66
L +GH RV SL ++ +SGSLD S+R+WD+ C L T + +
Sbjct: 272 LHTLQGHTNRVYSLQFDGIH--VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD 329
Query: 67 LVFAVAMEAGAIKLFDSRS 85
+ +K++D ++
Sbjct: 330 NILVSGNADSTVKIWDIKT 348
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 29/202 (14%)
Query: 21 CMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL--RLRGRPTVAFDQQGLVFAVAMEAGA- 77
CM +SGS D ++R+WD+ C +L + V +D + +V +GA
Sbjct: 204 CMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV------SGAY 257
Query: 78 ---IKLFDSRSYDKGPFDTFL--VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG 132
+K++D + +T L + G T V ++F DG ++ + + +I V D G
Sbjct: 258 DFMVKVWDPET------ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG 309
Query: 133 EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG---NIGVV 189
C +L + + + +VSG+ D T+ W+I T + G + V
Sbjct: 310 N--CIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV 365
Query: 190 ACLKWAPRRAMFVAASSVLSFW 211
CL++ + + + W
Sbjct: 366 TCLQFNKNFVITSSDDGTVKLW 387
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 46/203 (22%)
Query: 10 FKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLV 68
+GH++ L +P +N +S S DH++ +WD +NA R+ + +V
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWD--INATPKEHRVIDAKNIFTGHTAVV 234
Query: 69 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI---- 124
VA LF S ++D K M+ T NNN
Sbjct: 235 EDVAWHLLHESLFGS------------------------VADDQKLMIWDTRNNNTSKPS 270
Query: 125 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGTLHAWNI-NTRNEVACW 182
+ +DA+ E C +F P ++++ +GS D T+ W++ N + ++ +
Sbjct: 271 HTVDAHTAEVNC-------------LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 317
Query: 183 NGNIGVVACLKWAPRRAMFVAAS 205
+ + ++W+P +A+S
Sbjct: 318 ESHKDEIFQVQWSPHNETILASS 340
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 46/203 (22%)
Query: 10 FKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLV 68
+GH++ L +P +N +S S DH++ +WD +NA R+ + +V
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWD--INATPKEHRVIDAKNIFTGHTAVV 236
Query: 69 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI---- 124
VA LF S ++D K M+ T NNN
Sbjct: 237 EDVAWHLLHESLFGS------------------------VADDQKLMIWDTRNNNTSKPS 272
Query: 125 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGTLHAWNI-NTRNEVACW 182
+ +DA+ E C +F P ++++ +GS D T+ W++ N + ++ +
Sbjct: 273 HTVDAHTAEVNC-------------LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 319
Query: 183 NGNIGVVACLKWAPRRAMFVAAS 205
+ + ++W+P +A+S
Sbjct: 320 ESHKDEIFQVQWSPHNETILASS 342
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 29/176 (16%)
Query: 1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
+++ ++R F+GH + + +S +G LD++VR WDLR GR
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR----------EGRQLQ 219
Query: 61 AFDQQGLVF-----------AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS 109
D +F AV ME+ +++ DK + + + V +KF+
Sbjct: 220 QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----YQLHLHESCVLSLKFA 274
Query: 110 NDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 165
GK + T +N +L+A+ ++ + D +Y+V+GSGD
Sbjct: 275 YCGKWFVSTGKDN---LLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD 327
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 1/118 (0%)
Query: 76 GAIKLFD-SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 134
G +K++D S +K P + K DG ++++ + + + D
Sbjct: 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131
Query: 135 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACL 192
R L S +PD + S DG + W+++ + V + G+ +C+
Sbjct: 132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 189
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 46/203 (22%)
Query: 10 FKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLV 68
+GH++ L +P +N +S S DH++ +WD +NA R+ + +V
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWD--INATPKEHRVIDAKNIFTGHTAVV 238
Query: 69 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI---- 124
VA LF S ++D K M+ T NNN
Sbjct: 239 EDVAWHLLHESLFGS------------------------VADDQKLMIWDTRNNNTSKPS 274
Query: 125 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGTLHAWNI-NTRNEVACW 182
+ +DA+ E C +F P ++++ +GS D T+ W++ N + ++ +
Sbjct: 275 HTVDAHTAEVNC-------------LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 321
Query: 183 NGNIGVVACLKWAPRRAMFVAAS 205
+ + ++W+P +A+S
Sbjct: 322 ESHKDEIFQVQWSPHNETILASS 344
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVA--FDQQGL 67
F GH + ++S +D +S S+D SVR+W L+ N + + G P A Q G
Sbjct: 285 FYGHSQSIVSASWVG-DDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQ 343
Query: 68 VFAVAMEAGAIKLFDSR 84
+AVA G + ++D +
Sbjct: 344 KYAVAFMDGQVNVYDLK 360
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 108 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 167
F+N +LL T +++ ++ +K C ++ N+ F+PD + + S S DGT
Sbjct: 713 FTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGT 772
Query: 168 LHAWNINTRNE 178
L W+ + NE
Sbjct: 773 LKLWDATSANE 783
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 23/169 (13%)
Query: 11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFA 70
+GH V + SP SF++ S D ++R+W+ + + L+ V F + ++
Sbjct: 885 RGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVL 944
Query: 71 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC------DIKFSND-GKSMLLTTTNNN 123
++L + R+ G D +L + C I F ++ G +L NN
Sbjct: 945 AVDHIRRLQLINGRT---GQID-YLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNR 1000
Query: 124 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
I+ S T FT D + ++S S D + WN
Sbjct: 1001 IFQ------------SRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN 1037
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 27/220 (12%)
Query: 5 RILRYFKGHKERVISLCMSPVNDS----FMSGSLDHSVRIWDLRVNACQGIL--RLRGRP 58
++ + H E+V C N S +GS D +++WDL C+ +
Sbjct: 696 ELVHTYDEHSEQVN--CCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVN 753
Query: 59 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF----DTFLVGGDTAEVCDI-----KFS 109
F + A G +KL+D+ S ++ FL D E ++ +S
Sbjct: 754 HCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWS 813
Query: 110 NDGKSMLLTTTNNNIYVLDAYG----GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 165
DG + ++ N I++ D + GE G +T F+P V
Sbjct: 814 ADG-ARIMVAAKNKIFLFDIHTSGLLGEIHTGHH-----STIQYCDFSPQNHLAVVALSQ 867
Query: 166 GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
+ WN ++R++VA G++ V + ++P + F+ +S
Sbjct: 868 YCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSS 907
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 94/235 (40%), Gaps = 46/235 (19%)
Query: 1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
+ +NRI + HK+ V + + + +S S D +++W+ +++ C + LRG
Sbjct: 996 LVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKC---IFLRGHQET 1052
Query: 61 AFDQQGLVFAVAME---AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL 117
D + L + + G +K+++ + +K F+ T CDI S+D
Sbjct: 1053 VKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEK--DFVCHQGTVLSCDI--SHDATKFSS 1108
Query: 118 TTTNNN-----------IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 166
T+ + ++ L + G RC + F+ D + +G +G
Sbjct: 1109 TSADKTAKIWSFDLLLPLHELRGHNGCVRC-------------SAFSVDSTLLATGDDNG 1155
Query: 167 TLHAWNINT----------RNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFW 211
+ WN++ E A +G G V L ++P M ++A + +W
Sbjct: 1156 EIRIWNVSNGELLHLCAPLSEEGAATHG--GWVTDLCFSPDGKMLISAGGYIKWW 1208
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 77/208 (37%), Gaps = 24/208 (11%)
Query: 10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-ACQGILRLRGRPTVAFDQQGLV 68
F+ H + + S+ + P +SGS D +V++W+ N A + + V
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE---------GHEHFV 143
Query: 69 FAVAMEAGAIKLFDSRSYDKG----------PFDTFLVGGDT-AEVCDIKFSNDGKSMLL 117
VA F S D+ P T G + D D M+
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 118 TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 177
+ + I + D K C +LE + + A F P ++SGS DGTL WN +T
Sbjct: 204 ASDDLTIKIWDY--QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
Query: 178 EVACWNGNIGVVACLKWAPR-RAMFVAA 204
N + C+ P R ++A+
Sbjct: 262 VEKTLNVGLERSWCIATHPTGRKNYIAS 289
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 107 KFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 166
KF +++ + + I V + GEK F E P+ P YV+SGS D
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF--EAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 167 TLHAWNI-NTRNEVACWNGNIGVVACLKWAPR 197
T+ WN N + G+ V C+ + P+
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 77/208 (37%), Gaps = 24/208 (11%)
Query: 10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-ACQGILRLRGRPTVAFDQQGLV 68
F+ H + + S+ + P +SGS D +V++W+ N A + + V
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE---------GHEHFV 143
Query: 69 FAVAMEAGAIKLFDSRSYDKG----------PFDTFLVGGDT-AEVCDIKFSNDGKSMLL 117
VA F S D+ P T G + D D M+
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 118 TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 177
+ + I + D K C +LE + + A F P ++SGS DGTL WN +T
Sbjct: 204 ASDDLTIKIWDY--QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
Query: 178 EVACWNGNIGVVACLKWAPR-RAMFVAA 204
N + C+ P R ++A+
Sbjct: 262 VEKTLNVGLERSWCIATHPTGRKNYIAS 289
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 107 KFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 166
KF +++ + + I V + GEK F E P+ P YV+SGS D
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF--EAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 167 TLHAWNI-NTRNEVACWNGNIGVVACLKWAPR 197
T+ WN N + G+ V C+ + P+
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 85/230 (36%), Gaps = 24/230 (10%)
Query: 10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-ACQGILRLRGRPTVAFDQQGLV 68
F+ H + + S+ + P +SGS D +V++W+ N A + + V
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE---------GHEHFV 143
Query: 69 FAVAMEAGAIKLFDSRSYDKG----------PFDTFLVGGDTA-EVCDIKFSNDGKSMLL 117
VA F S D+ P T G + D D M+
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 118 TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 177
+ + I + D K C +LE + + A F P ++SGS DGTL WN +T
Sbjct: 204 ASDDLTIKIWDY--QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
Query: 178 EVACWNGNIGVVACLKWAPR-RAMFVAASSVLSFWIPNPSSNSTDESTDP 226
N + C+ P R ++A+ F + + ++ S DP
Sbjct: 262 VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDP 311
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 107 KFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 166
KF +++ + + I V + GEK F E P+ P YV+SGS D
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF--EAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 167 TLHAWNI-NTRNEVACWNGNIGVVACLKWAPR 197
T+ WN N + G+ V C+ + P+
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 30/212 (14%)
Query: 8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGL 67
R +GH V + +S +SGS D ++R+WDL R V +
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT-------RRFVGHTKD-- 130
Query: 68 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT----TTNNN 123
V +VA + D+R G D + +T VC ++ S ++ + N++
Sbjct: 131 VLSVAFSS------DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184
Query: 124 IYVLDAYGGEK--------RCGFSLEPSPNTN--TEATFTPDGQYVVSGSGDGTLHAWNI 173
++ + G +K C +T T +PDG SG DG W++
Sbjct: 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
Query: 174 NTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
N + +G ++ L ++P R AA+
Sbjct: 245 NEGKHLYTLDGG-DIINALCFSPNRYWLCAAT 275
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 30/212 (14%)
Query: 8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGL 67
R +GH V + +S +SGS D ++R+WDL R V +
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT-------RRFVGHTKD-- 107
Query: 68 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT----TTNNN 123
V +VA + D+R G D + +T VC ++ S ++ + N++
Sbjct: 108 VLSVAFSS------DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 161
Query: 124 IYVLDAYGGEK--------RCGFSLEPSPNTN--TEATFTPDGQYVVSGSGDGTLHAWNI 173
++ + G +K C +T T +PDG SG DG W++
Sbjct: 162 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
Query: 174 NTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
N + +G ++ L ++P R AA+
Sbjct: 222 NEGKHLYTLDGG-DIINALCFSPNRYWLCAAT 252
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 81/219 (36%), Gaps = 45/219 (20%)
Query: 10 FKGHKERVISLCMSPVNDS-FMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLV 68
F+GH+ V+ + +P + S F SG LD +V++W L G+ T F
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL------------GQSTPNF-----T 178
Query: 69 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 128
E G + D P+ M+ + + I + D
Sbjct: 179 LTTGQERG-VNYVDYYPLPDKPY-----------------------MITASDDLTIKIWD 214
Query: 129 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV 188
K C +LE + + A F P ++SGS DGTL WN +T N +
Sbjct: 215 Y--QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Query: 189 VACLKWAPR-RAMFVAASSVLSFWIPNPSSNSTDESTDP 226
C+ P R ++A+ F + + ++ S DP
Sbjct: 273 SWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDP 311
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 124 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI-NTRNEVACW 182
I V + GEK F E P+ P YV+SGS D T+ WN N +
Sbjct: 79 IRVFNYNTGEKVVDF--EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 183 NGNIGVVACLKWAPR 197
G+ V C+ + P+
Sbjct: 137 EGHEHFVMCVAFNPK 151
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 66/165 (40%), Gaps = 5/165 (3%)
Query: 11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP----TVAFDQQG 66
+GH+ V + SP + S S D + IW + + + L G +VA+ G
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG 117
Query: 67 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 126
+ A ++ +++ D+ + L T +V + + + + + ++ + +
Sbjct: 118 NLLATCSRDKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVKL 176
Query: 127 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW 171
+ C +LE +T F P GQ + S S D T+ W
Sbjct: 177 YREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 135 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC---WNGNIGVVAC 191
C +LE N + P G + + S D ++ W ++ +E C N + V
Sbjct: 96 ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH 155
Query: 192 LKWAPRRAMFVAAS 205
+ W P + + +AS
Sbjct: 156 VVWHPSQELLASAS 169
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 141 EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC---WNGNIGVVACLKWAPR 197
E T + ++P G Y+ S S D T W N +++ C G+ V + WAP
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN-QDDFECVTTLEGHENEVKSVAWAPS 116
Query: 198 RAMFVAASSVLSFWI 212
+ S S W+
Sbjct: 117 GNLLATCSRDKSVWV 131
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/203 (19%), Positives = 83/203 (40%), Gaps = 46/203 (22%)
Query: 10 FKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLV 68
+GH++ L +P ++ +S S DH++ +WD+ +G ++ T+ +V
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEG--KVVDAKTIFTGHTAVV 230
Query: 69 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI---- 124
V+ LF S ++D K M+ T +NN
Sbjct: 231 EDVSWHLLHESLFGS------------------------VADDQKLMIWDTRSNNTSKPS 266
Query: 125 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGTLHAWNI-NTRNEVACW 182
+ +DA+ E C +F P ++++ +GS D T+ W++ N + ++ +
Sbjct: 267 HSVDAHTAEVNC-------------LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313
Query: 183 NGNIGVVACLKWAPRRAMFVAAS 205
+ + ++W+P +A+S
Sbjct: 314 ESHKDEIFQVQWSPHNETILASS 336
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/212 (18%), Positives = 81/212 (38%), Gaps = 27/212 (12%)
Query: 29 FMSGSLDHSVRIWDLRVNACQGILR-----LRGRPTVAF-----------DQQGLVFAVA 72
+SGS D +VR+WD++ C + +R V + D V+ +
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 73 MEAGAIKLFDSRSY-------DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 125
E+ + Y ++ P+ ++ G A V + S G ++ + +N +
Sbjct: 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLI 293
Query: 126 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN 185
V D + +C + L + + + + +S S D T+ W++ + G+
Sbjct: 294 VWDV--AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 351
Query: 186 IGVVACLKWAPRRAMFVAASSVLSFWIPNPSS 217
+V L+ + + + AA + W N S
Sbjct: 352 TALVGLLRLSDKFLVSAAADGSIRGWDANDYS 383
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 20/94 (21%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR----------VNACQGILRL 54
+ L GH +R+ S +S S+D ++RIWDL A G+LRL
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360
Query: 55 RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK 88
+ V+ A G+I+ +D+ Y +
Sbjct: 361 SDKFLVS----------AAADGSIRGWDANDYSR 384
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 46/170 (27%)
Query: 10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVF 69
+GH VI+ C+ ++ ++G+ D +R++D +N + +L+L G G V+
Sbjct: 117 LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYD-SINK-KFLLQLSG-------HDGGVW 166
Query: 70 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 129
A+ G I + S S D+ T V DIK +V +
Sbjct: 167 ALKYAHGGILV--SGSTDR-----------TVRVWDIK------------KGCCTHVFEG 201
Query: 130 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 179
+ RC L+ N +Y+V+GS D TLH W + + V
Sbjct: 202 HNSTVRC---LDIVEYKNI--------KYIVTGSRDNTLHVWKLPKESSV 240
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 3 DNRILRYFKGHKERVISLCMSPVNDSFM-SGSLDHSVRIWDLR 44
D + L + HK++V + ++P D F+ + S+D +V+IWDLR
Sbjct: 239 DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/212 (18%), Positives = 80/212 (37%), Gaps = 27/212 (12%)
Query: 29 FMSGSLDHSVRIWDLRVNACQGILR-----LRGRPTVAF-----------DQQGLVFAVA 72
+SGS D +VR+WD++ C + +R V + D V+ +
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 73 MEAGAIKLFDSRSY-------DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 125
E+ + Y ++ P+ ++ G A V + S G ++ + +N +
Sbjct: 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDNTLI 293
Query: 126 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN 185
V D + +C + L + + + + +S S D T+ W++ G+
Sbjct: 294 VWDV--AQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGH 351
Query: 186 IGVVACLKWAPRRAMFVAASSVLSFWIPNPSS 217
+V L+ + + + AA + W N S
Sbjct: 352 TALVGLLRLSDKFLVSAAADGSIRGWDANDYS 383
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
Query: 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR----------VNACQGILRL 54
+ L GH +R+ S +S S D ++RIWDL A G+LRL
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRL 360
Query: 55 RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK 88
+ V+ A G+I+ +D+ Y +
Sbjct: 361 SDKFLVS----------AAADGSIRGWDANDYSR 384
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 46/170 (27%)
Query: 10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVF 69
+GH VI+ C+ ++ ++G+ D +R++D +N + +L+L G G V+
Sbjct: 117 LRGHXTSVIT-CLQFEDNYVITGADDKXIRVYD-SINK-KFLLQLSG-------HDGGVW 166
Query: 70 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 129
A+ G I + S S D+ T V DIK +V +
Sbjct: 167 ALKYAHGGILV--SGSTDR-----------TVRVWDIK------------KGCCTHVFEG 201
Query: 130 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 179
+ RC L+ N +Y+V+GS D TLH W + + V
Sbjct: 202 HNSTVRC---LDIVEYKNI--------KYIVTGSRDNTLHVWKLPKESSV 240
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 3 DNRILRYFKGHKERVISLCMSPVNDSFM-SGSLDHSVRIWDLR 44
D + L + HK++V + ++P D F+ + S+D +V+IWDLR
Sbjct: 239 DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 3 DNRILRYFKGHKERVISLCMSPVNDSFM-SGSLDHSVRIWDLR 44
D + L + HK++V + ++P D F+ + S+D +V+IWDLR
Sbjct: 240 DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 282
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 70/196 (35%), Gaps = 41/196 (20%)
Query: 10 FKGHKERVISLCM---------SPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
+GH + V S+ SPV +SGS D +V IW L G + +
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPV---LISGSRDKTVMIWKLYEEEQNGYFGIPHKALT 73
Query: 61 AFDQ--------QGLVFAVAME-AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 111
+ Q FA++ ++L+D R+ + F+ G +EV + FS D
Sbjct: 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT--GTTYKRFV--GHQSEVYSVAFSPD 129
Query: 112 GKSMLLTTTNNNIYVLDAYGGEKRCGFS-------------LEPSPNTNTEATFTPDGQY 158
+ +L I + + G C FS + SP + P Y
Sbjct: 130 NRQILSAGAEREIKLWNILG---ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPY 186
Query: 159 VVSGSGDGTLHAWNIN 174
S DG L WN N
Sbjct: 187 FASVGWDGRLKVWNTN 202
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 4 NRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--- 59
N +RY FK H+ V L +SP +G D + IWD+ +N T
Sbjct: 202 NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI-LNLTYPQREFDAGSTINQ 260
Query: 60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP 90
+AF+ + AV + G +K+F+ + K P
Sbjct: 261 IAFNPKLQWVAVGTDQG-VKIFNLMTQSKAP 290
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIW 41
KGH RV+SL MSP + S + D ++R+W
Sbjct: 371 LKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 9/150 (6%)
Query: 51 ILRLRGRPTVAFD--QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF 108
ILRL G+P A + Q L + +A + Y D L D E+ + +
Sbjct: 62 ILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRIL---DAPEIRNDYY 118
Query: 109 SN----DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 164
N ++L +N++Y+ A G+ +E + + +G Y+ G+
Sbjct: 119 LNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS 178
Query: 165 DGTLHAWNINTRNEVACWNGNIGVVACLKW 194
+ W++ + + + V L W
Sbjct: 179 SAEVQLWDVQQQKRLRNMTSHSARVGSLSW 208
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIW 41
KGH RV+SL MSP + S + D ++R+W
Sbjct: 360 LKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 9/150 (6%)
Query: 51 ILRLRGRPTVAFD--QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF 108
ILRL G+P A + Q L + +A + Y D L D E+ + +
Sbjct: 51 ILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRIL---DAPEIRNDYY 107
Query: 109 SN----DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 164
N ++L +N++Y+ A G+ +E + + +G Y+ G+
Sbjct: 108 LNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS 167
Query: 165 DGTLHAWNINTRNEVACWNGNIGVVACLKW 194
+ W++ + + + V L W
Sbjct: 168 SAEVQLWDVQQQKRLRNMTSHSARVGSLSW 197
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIW 41
KGH RV+SL MSP + S + D ++R+W
Sbjct: 280 LKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 31/187 (16%)
Query: 11 KGHKERVISLCMSPVND------SFMSGSLDHSVRIWDLR--------VNACQGILRLRG 56
KGHKE + ++ ++GS D +V++WD R + QG + R
Sbjct: 108 KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENK-RD 166
Query: 57 RPTVAF----DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 112
TVAF +Q+ V + G IKLFD R+ ++T + G VC ++F
Sbjct: 167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-RWETNIKNG----VCSLEFDRKD 221
Query: 113 KSM---LLTTTNNNIYVLDAYGGEKRCGF---SLEPSPNTNTEATFTPDG-QYVVSGSGD 165
SM + T+ +V D GF S + +T + P + ++ G
Sbjct: 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA 281
Query: 166 GTLHAWN 172
G LH W
Sbjct: 282 GGLHLWK 288
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 88/213 (41%), Gaps = 26/213 (12%)
Query: 7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAF 62
+R FKGH V ++ +S S D ++R+WD V + R G + V
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDI 115
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD----TAEVCDIKFSNDGKSMLLT 118
D++ + IK++ KG L+G + V + ++D +++
Sbjct: 116 DKKASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 119 TTNNNIYVLDAYGGEKRCGFSLEP-----SPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 173
N+ + + A+ + F +E + N NT T +PDG + S DG + WN+
Sbjct: 172 AGNDKM--VKAWNLNQ---FQIEADFIGHNSNINT-LTASPDGTLIASAGKDGEIMLWNL 225
Query: 174 NTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 206
+ + + V + L ++P R AA++
Sbjct: 226 AAKKAMYTLSAQDEVFS-LAFSPNRYWLAAATA 257
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 88/213 (41%), Gaps = 26/213 (12%)
Query: 7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAF 62
+R FKGH V ++ +S S D ++R+WD V + R G + V
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDI 115
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD----TAEVCDIKFSNDGKSMLLT 118
D++ + IK++ KG L+G + V + ++D +++
Sbjct: 116 DKKASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 119 TTNNNIYVLDAYGGEKRCGFSLEP-----SPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 173
N+ + + A+ + F +E + N NT T +PDG + S DG + WN+
Sbjct: 172 AGNDKM--VKAWNLNQ---FQIEADFIGHNSNINT-LTASPDGTLIASAGKDGEIMLWNL 225
Query: 174 NTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 206
+ + + V + L ++P R AA++
Sbjct: 226 AAKKAMYTLSAQDEVFS-LAFSPNRYWLAAATA 257
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 88/213 (41%), Gaps = 26/213 (12%)
Query: 7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAF 62
+R FKGH V ++ +S S D ++R+WD V + R G + V
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDI 109
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD----TAEVCDIKFSNDGKSMLLT 118
D++ + IK++ KG L+G + V + ++D +++
Sbjct: 110 DKKASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 165
Query: 119 TTNNNIYVLDAYGGEKRCGFSLEP-----SPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 173
N+ + + A+ + F +E + N NT T +PDG + S DG + WN+
Sbjct: 166 AGNDKM--VKAWNLNQ---FQIEADFIGHNSNINT-LTASPDGTLIASAGKDGEIMLWNL 219
Query: 174 NTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 206
+ + + V + L ++P R AA++
Sbjct: 220 AAKKAMYTLSAQDEVFS-LAFSPNRYWLAAATA 251
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 88/213 (41%), Gaps = 26/213 (12%)
Query: 7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAF 62
+R FKGH V ++ +S S D ++R+WD V + R G + V
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDI 115
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD----TAEVCDIKFSNDGKSMLLT 118
D++ + IK++ KG L+G + V + ++D +++
Sbjct: 116 DKKASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 119 TTNNNIYVLDAYGGEKRCGFSLEP-----SPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 173
N+ + + A+ + F +E + N NT T +PDG + S DG + WN+
Sbjct: 172 AGNDKM--VKAWNLNQ---FQIEADFIGHNSNINT-LTASPDGTLIASAGKDGEIMLWNL 225
Query: 174 NTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 206
+ + + V + L ++P R AA++
Sbjct: 226 AAKKAMYTLSAQDEVFS-LAFSPNRYWLAAATA 257
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 88/213 (41%), Gaps = 26/213 (12%)
Query: 7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAF 62
+R FKGH V ++ +S S D ++R+WD V + R G + V
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDI 115
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD----TAEVCDIKFSNDGKSMLLT 118
D++ + IK++ KG L+G + V + ++D +++
Sbjct: 116 DKKASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 119 TTNNNIYVLDAYGGEKRCGFSLEP-----SPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 173
N+ + + A+ + F +E + N NT T +PDG + S DG + WN+
Sbjct: 172 AGNDKM--VKAWNLNQ---FQIEADFIGHNSNINT-LTASPDGTLIASAGKDGEIMLWNL 225
Query: 174 NTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 206
+ + + V + L ++P R AA++
Sbjct: 226 AAKKAMYTLSAQDEVFS-LAFSPNRYWLAAATA 257
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 39/203 (19%), Positives = 80/203 (39%), Gaps = 46/203 (22%)
Query: 10 FKGHKERVISLCM-SPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLV 68
+GH++ L S ++ +S S DH+V +WD+ +G ++ + +V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEG--KIVDAKAIFTGHSAVV 232
Query: 69 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI---- 124
VA LF S ++D K M+ T +N
Sbjct: 233 EDVAWHLLHESLFGS------------------------VADDQKLMIWDTRSNTTSKPS 268
Query: 125 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGTLHAWNI-NTRNEVACW 182
+++DA+ E C +F P ++++ +GS D T+ W++ N + ++ +
Sbjct: 269 HLVDAHTAEVNC-------------LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315
Query: 183 NGNIGVVACLKWAPRRAMFVAAS 205
+ + + W+P +A+S
Sbjct: 316 ESHKDEIFQVHWSPHNETILASS 338
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 12/204 (5%)
Query: 8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR--VNACQGILRLRGRPTVAFDQQ 65
R GH V + +S +SGS D +R+WDL V+ + + + +VAF
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 66 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE--VCDIKFSND--GKSMLLTTTN 121
A IKL+++ K T GG+ V ++FS + +++ + +
Sbjct: 484 NRQIVSASRDRTIKLWNTLGECKY---TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD 540
Query: 122 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC 181
+ V + + R +L + +PDG SG DG + W++ ++
Sbjct: 541 KTVKVWNLSNCKLRS--TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS 598
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
N V+ L ++P R AA+
Sbjct: 599 LEAN-SVIHALCFSPNRYWLCAAT 621
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 23/202 (11%)
Query: 10 FKGHKERVISLCMSPVN--DSFMSGSLDHSVRIWDL-RVNACQGIL--RLRGR----PTV 60
+ H + V ++ +P++ D +S S D S+ +W L + + G+ RL G V
Sbjct: 378 MRAHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
G G ++L+D + T G T +V + FS D + ++ +
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAA----GVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTE----ATFTPD--GQYVVSGSGDGTLHAWNIN 174
+ I + + G C +++ + + F+P+ +VS S D T+ WN++
Sbjct: 493 DRTIKLWNTLG---ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 175 TRNEVACWNGNIGVVACLKWAP 196
+ G+ G V+ + +P
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSP 571
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 80/199 (40%), Gaps = 38/199 (19%)
Query: 10 FKGHKERVISLCM-SPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLV 68
+GH++ L S ++ +S S DH+V +WD+ +G ++ + +V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEG--KIVDAKAIFTGHSAVV 232
Query: 69 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 128
VA LF S + D+ L DT TT+ +++D
Sbjct: 233 EDVAWHLLHESLFGSVADDQK-----LXIWDTRS---------------NTTSKPSHLVD 272
Query: 129 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGTLHAWNI-NTRNEVACWNGNI 186
A+ E C +F P ++++ +GS D T+ W++ N + ++ + +
Sbjct: 273 AHTAEVNC-------------LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK 319
Query: 187 GVVACLKWAPRRAMFVAAS 205
+ + W+P +A+S
Sbjct: 320 DEIFQVHWSPHNETILASS 338
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 18/209 (8%)
Query: 7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAF 62
+R FKGH V ++ +S S D ++R+WD V + R G + V
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD--VATGETYQRFVGHKSDVXSVDI 115
Query: 63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG-----GDTAEVCDIKFSNDGKSMLL 117
D++ IK++ KG L+G V + K +D +++
Sbjct: 116 DKKASXIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 118 TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 177
+ + + + F + + N NT T +PDG + S DG + WN+ +
Sbjct: 172 AGNDKXVKAWNLNQFQIEADF-IGHNSNINT-LTASPDGTLIASAGKDGEIXLWNLAAKK 229
Query: 178 EVACWNGNIGVVACLKWAPRRAMFVAASS 206
+ V + L ++P R AA++
Sbjct: 230 AXYTLSAQDEVFS-LAFSPNRYWLAAATA 257
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 47/239 (19%), Positives = 90/239 (37%), Gaps = 57/239 (23%)
Query: 10 FKGHKERVISLCMSPVNDSFM-SGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLV 68
+GH++ ++++ SP D + + S D V++WD+R G L + DQ
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR--RASGCL-------ITLDQHNGK 232
Query: 69 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 128
+ A+E+ +V + F++DG +L T+N + + +
Sbjct: 233 KSQAVESANT-------------------AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
Query: 129 AYGGE-------KRC-----GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR 176
+ GE K C G S ++E F P G T+ + + +
Sbjct: 274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS---------TIAVYTVYSG 324
Query: 177 NEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNSTDESTDPQATVKS 232
++ G+ V C + + S ++L+ W+P+ D D + T KS
Sbjct: 325 EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA-WVPSLYEPVPD---DDETTTKS 379
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 97 GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA-----T 151
G T V ++++ DG T + I + + G K F + N T
Sbjct: 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 246
Query: 152 FTPDGQYVVSGSGDGTLHAWNINT 175
++PDG + S S D T+ WN+ T
Sbjct: 247 WSPDGTKIASASADKTIKIWNVAT 270
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDL 43
H +V + SP N +GSLD+SV +W++
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565
>pdb|3U5C|B Chain B, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|B Chain B, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 255
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG 50
K RV+ +C++ + GS DHS R LRV+ QG
Sbjct: 62 KGRVVEVCLAD-----LQGSEDHSFRKIKLRVDEVQG 93
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA 47
+GH++ V+S + + MS +DHS+++W R+N+
Sbjct: 194 EGHRDEVLSADYDLLGEKIMSCGMDHSLKLW--RINS 228
>pdb|1GZE|A Chain A, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|B Chain B, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|C Chain C, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|D Chain D, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
Length = 211
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 47 ACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI 106
+C + + GRP + A +AG I D S G + L T + D+
Sbjct: 136 SCMNVSQFAGRPIIT----KFKVAKGSKAGYI---DPISAFAGQLEMLLPRHSTYHIDDM 188
Query: 107 KFSNDGKSMLLTTT 120
+ S+DGK +++T T
Sbjct: 189 RLSSDGKQIIITAT 202
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA 47
+GH++ V+S + + MS +DHS+++W R+N+
Sbjct: 157 EGHRDEVLSADYDLLGEKIMSCGMDHSLKLW--RINS 191
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA 47
+GH++ V+S + + MS +DHS+++W R+N+
Sbjct: 157 EGHRDEVLSADYDLLGEKIMSCGMDHSLKLW--RINS 191
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA 47
+GH++ V+S + + MS +DHS+++W R+N+
Sbjct: 158 EGHRDEVLSADYDLLGEKIMSCGMDHSLKLW--RINS 192
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA 47
+GH++ V+S + + MS +DHS+++W R+N+
Sbjct: 153 EGHRDEVLSADYDLLGEKIMSCGMDHSLKLW--RINS 187
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 108 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 167
++ D + + N+ +++ + G + L+ T + PD +V+ D
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN 75
Query: 168 LHAWNINTRNEVACWNGNIGVVA------CLKWAPRRAMFVAAS 205
+ W + R W + ++ C++WAP F S
Sbjct: 76 AYVWTLKGRT----WKPTLVILRINRAARCVRWAPNEKKFAVGS 115
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/169 (17%), Positives = 59/169 (34%), Gaps = 26/169 (15%)
Query: 8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGL 67
R GH+ V + + + +S SLD ++R+W+ + P + L
Sbjct: 172 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 231
Query: 68 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 127
+ I + + G + +++ G + V I V
Sbjct: 232 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV--------------------ITVH 271
Query: 128 DAYGGEKRCGFSLEPSPNTNTEATFTPDG---QYVVSGSGDGTLHAWNI 173
+ + E+ PS T + + T DG Y+ +G +G L W++
Sbjct: 272 NVFSKEQTIQL---PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL 317
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/169 (17%), Positives = 59/169 (34%), Gaps = 26/169 (15%)
Query: 8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGL 67
R GH+ V + + + +S SLD ++R+W+ + P + L
Sbjct: 175 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234
Query: 68 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 127
+ I + + G + +++ G + V I V
Sbjct: 235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV--------------------ITVH 274
Query: 128 DAYGGEKRCGFSLEPSPNTNTEATFTPDG---QYVVSGSGDGTLHAWNI 173
+ + E+ PS T + + T DG Y+ +G +G L W++
Sbjct: 275 NVFSKEQTIQL---PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL 320
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 108 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 167
++ D + + N+ +++ + G + L+ T + PD +V+ D
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRN 75
Query: 168 LHAWNINTRNEVACWNGNIGVVA------CLKWAPRRAMFVAAS 205
+ W + R W + ++ C++WAP F S
Sbjct: 76 AYVWTLKGRT----WKPTLVILRINRAARCVRWAPNEKKFAVGS 115
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 140 LEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNI 173
+E PN+ T + +P + Y+++GS G + WN+
Sbjct: 59 MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNL 93
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 152 FTPDGQYVVSGSGDGTLHAWNINTRNEV 179
F+P +++ + DG + WN+ TR ++
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKI 286
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 152 FTPDGQYVVSGSGDGTLHAWNINTRNEV 179
F+P +++ + DG + WN+ TR ++
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKI 286
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 152 FTPDGQYVVSGSGDGTLHAWNINTRNEV 179
F+P +++ + DG + WN+ TR ++
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKI 286
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 152 FTPDGQYVVSGSGDGTLHAWNINTRNEV 179
F+P +++ + DG + WN+ TR ++
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKI 286
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 182
N+YV +A G + S ++ DG ++ G G+G + +++ ++ ++
Sbjct: 114 NVYVWNADSGSVSALAETDESTYV-ASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM 172
Query: 183 NGNIGVVACLKW 194
G+ V CL W
Sbjct: 173 AGHQARVGCLSW 184
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 157 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPS 216
+Y V+GS D ++ W+++ VA W + V ++++P F+A +L + NP
Sbjct: 87 KYCVTGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGNYFLA---ILDNVMKNPG 142
Query: 217 S 217
S
Sbjct: 143 S 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,526,527
Number of Sequences: 62578
Number of extensions: 322997
Number of successful extensions: 1269
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 629
Number of HSP's gapped (non-prelim): 440
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)