Query 026679
Match_columns 235
No_of_seqs 615 out of 1492
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 11:12:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.6E-42 3.5E-47 245.7 19.0 215 6-223 107-448 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-43 3.5E-48 253.1 14.0 216 3-224 206-428 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.4E-42 5.1E-47 247.1 15.2 204 3-212 250-458 (459)
4 KOG0263 Transcription initiati 100.0 8.7E-42 1.9E-46 260.7 18.9 205 6-216 443-651 (707)
5 KOG0279 G protein beta subunit 100.0 1.9E-40 4.2E-45 226.0 20.8 211 3-219 52-267 (315)
6 KOG0286 G-protein beta subunit 100.0 3.4E-38 7.4E-43 216.5 21.3 203 5-212 136-343 (343)
7 KOG0286 G-protein beta subunit 100.0 9.5E-38 2.1E-42 214.3 22.7 208 7-217 48-262 (343)
8 KOG0271 Notchless-like WD40 re 100.0 5E-39 1.1E-43 228.0 16.5 209 2-212 145-479 (480)
9 KOG0279 G protein beta subunit 100.0 1.4E-37 3E-42 212.1 21.6 217 4-225 5-234 (315)
10 KOG0315 G-protein beta subunit 100.0 2.9E-37 6.3E-42 207.6 21.7 217 5-224 74-298 (311)
11 KOG1446 Histone H3 (Lys4) meth 100.0 5.6E-36 1.2E-40 207.5 23.0 216 1-216 87-305 (311)
12 KOG0285 Pleiotropic regulator 100.0 1.1E-36 2.4E-41 214.5 18.4 208 5-218 142-352 (460)
13 KOG0295 WD40 repeat-containing 100.0 2.4E-36 5.3E-41 212.8 17.1 214 2-221 138-371 (406)
14 KOG0284 Polyadenylation factor 100.0 7.1E-37 1.5E-41 218.4 13.8 206 8-220 132-343 (464)
15 KOG0273 Beta-transducin family 100.0 8.4E-35 1.8E-39 211.2 21.6 211 3-220 265-488 (524)
16 KOG0266 WD40 repeat-containing 100.0 1.9E-34 4E-39 223.0 24.5 208 6-217 195-412 (456)
17 KOG0263 Transcription initiati 100.0 2.8E-35 6E-40 225.3 18.6 202 14-221 378-614 (707)
18 KOG0282 mRNA splicing factor [ 100.0 6.7E-36 1.5E-40 217.4 14.3 206 3-212 247-503 (503)
19 KOG0645 WD40 repeat protein [G 100.0 1.4E-33 3E-38 192.0 23.0 208 4-213 4-224 (312)
20 KOG0295 WD40 repeat-containing 100.0 3.2E-34 6.9E-39 202.2 20.3 204 4-213 183-405 (406)
21 KOG0266 WD40 repeat-containing 100.0 1.4E-33 3.1E-38 218.1 24.6 202 13-219 158-369 (456)
22 KOG0315 G-protein beta subunit 100.0 1.2E-33 2.5E-38 190.4 19.3 208 2-216 28-247 (311)
23 KOG0284 Polyadenylation factor 100.0 9.2E-35 2E-39 207.7 13.9 202 6-213 171-379 (464)
24 PTZ00421 coronin; Provisional 100.0 2.7E-32 5.9E-37 210.7 26.6 205 9-218 70-294 (493)
25 KOG0265 U5 snRNP-specific prot 100.0 3.1E-33 6.6E-38 192.8 18.9 205 5-216 38-248 (338)
26 KOG0316 Conserved WD40 repeat- 100.0 3.6E-33 7.9E-38 186.7 17.6 206 6-219 9-218 (307)
27 KOG0281 Beta-TrCP (transducin 100.0 2.8E-34 6.1E-39 202.1 12.5 206 3-219 226-433 (499)
28 cd00200 WD40 WD40 domain, foun 100.0 1.3E-31 2.9E-36 196.3 26.5 205 7-217 2-210 (289)
29 KOG0296 Angio-associated migra 100.0 4.5E-32 9.8E-37 191.5 21.4 208 2-214 94-398 (399)
30 KOG0291 WD40-repeat-containing 100.0 4.8E-32 1E-36 207.1 22.1 207 5-217 341-553 (893)
31 KOG0293 WD40 repeat-containing 100.0 1.3E-32 2.9E-37 197.2 17.4 208 5-215 215-514 (519)
32 KOG0282 mRNA splicing factor [ 100.0 1.9E-33 4.2E-38 204.7 13.2 210 5-221 205-469 (503)
33 KOG0285 Pleiotropic regulator 100.0 1.9E-32 4.2E-37 193.3 16.5 213 1-220 180-395 (460)
34 KOG0291 WD40-repeat-containing 100.0 1.8E-31 3.9E-36 204.0 20.9 206 6-216 299-510 (893)
35 KOG0276 Vesicle coat complex C 100.0 9.1E-32 2E-36 202.0 18.4 213 2-219 43-262 (794)
36 PTZ00420 coronin; Provisional 100.0 1.5E-30 3.2E-35 202.4 25.8 205 6-217 66-296 (568)
37 KOG0318 WD40 repeat stress pro 100.0 7.2E-31 1.6E-35 193.4 22.4 217 3-219 221-565 (603)
38 KOG0643 Translation initiation 100.0 6.6E-31 1.4E-35 178.8 20.0 213 3-216 41-319 (327)
39 KOG0319 WD40-repeat-containing 100.0 4.4E-32 9.5E-37 206.7 15.3 205 5-215 402-620 (775)
40 KOG0277 Peroxisomal targeting 100.0 7.3E-32 1.6E-36 182.2 14.4 204 5-213 95-308 (311)
41 cd00200 WD40 WD40 domain, foun 100.0 3.4E-30 7.3E-35 188.9 24.1 204 3-212 82-289 (289)
42 KOG0645 WD40 repeat protein [G 100.0 3.6E-30 7.7E-35 175.4 22.0 202 12-214 59-311 (312)
43 PLN00181 protein SPA1-RELATED; 100.0 4E-30 8.7E-35 212.0 26.0 206 2-213 563-792 (793)
44 KOG0292 Vesicle coat complex C 100.0 7.3E-31 1.6E-35 204.1 20.1 210 4-217 41-283 (1202)
45 KOG0276 Vesicle coat complex C 100.0 1.3E-30 2.8E-35 195.8 19.5 212 5-222 4-223 (794)
46 KOG0278 Serine/threonine kinas 100.0 4.3E-32 9.4E-37 183.1 10.0 215 2-219 47-302 (334)
47 KOG0319 WD40-repeat-containing 100.0 1.4E-30 3E-35 198.6 19.1 210 9-220 360-583 (775)
48 KOG0289 mRNA splicing factor [ 100.0 5.2E-30 1.1E-34 184.9 20.6 207 2-214 249-460 (506)
49 KOG0640 mRNA cleavage stimulat 100.0 9.4E-31 2E-35 181.8 15.8 208 9-218 107-339 (430)
50 KOG0265 U5 snRNP-specific prot 100.0 1.8E-30 3.8E-35 179.2 16.8 207 1-211 119-333 (338)
51 KOG0306 WD40-repeat-containing 100.0 2.5E-30 5.5E-35 197.7 19.2 207 3-215 443-665 (888)
52 PLN00181 protein SPA1-RELATED; 100.0 2.3E-29 4.9E-34 207.6 26.4 198 10-215 479-691 (793)
53 KOG0316 Conserved WD40 repeat- 100.0 2.3E-30 4.9E-35 173.4 15.9 206 1-212 88-297 (307)
54 KOG0283 WD40 repeat-containing 100.0 3.6E-30 7.9E-35 198.8 19.2 207 4-216 359-578 (712)
55 KOG0274 Cdc4 and related F-box 100.0 7.5E-30 1.6E-34 197.8 19.7 211 3-224 237-451 (537)
56 KOG0643 Translation initiation 100.0 4.7E-29 1E-33 169.8 20.3 212 9-227 5-234 (327)
57 KOG0292 Vesicle coat complex C 100.0 2.2E-29 4.9E-34 195.9 21.0 215 2-216 81-323 (1202)
58 KOG0283 WD40 repeat-containing 100.0 7.7E-30 1.7E-34 197.0 18.2 201 7-216 259-534 (712)
59 KOG0273 Beta-transducin family 100.0 2.4E-29 5.1E-34 183.1 19.2 195 15-217 236-443 (524)
60 KOG0277 Peroxisomal targeting 100.0 1.2E-29 2.7E-34 171.5 16.5 197 14-216 60-267 (311)
61 KOG0294 WD40 repeat-containing 100.0 4.4E-29 9.5E-34 173.5 19.2 202 6-216 35-283 (362)
62 KOG0772 Uncharacterized conser 100.0 1.1E-29 2.3E-34 187.0 15.9 210 8-217 161-397 (641)
63 KOG0313 Microtubule binding pr 100.0 9.5E-29 2.1E-33 175.6 19.7 201 6-213 185-417 (423)
64 KOG0275 Conserved WD40 repeat- 100.0 2E-30 4.3E-35 181.6 10.9 209 12-225 211-434 (508)
65 KOG0288 WD40 repeat protein Ti 100.0 1.9E-29 4.1E-34 180.9 16.1 203 2-211 249-458 (459)
66 KOG0318 WD40 repeat stress pro 100.0 3.5E-28 7.7E-33 179.3 22.8 223 2-230 135-366 (603)
67 KOG0305 Anaphase promoting com 100.0 5.6E-29 1.2E-33 187.1 18.7 203 9-216 212-463 (484)
68 KOG1407 WD40 repeat protein [F 100.0 1.8E-28 3.8E-33 166.5 19.0 200 8-215 14-220 (313)
69 KOG1407 WD40 repeat protein [F 100.0 1.6E-28 3.4E-33 166.8 18.5 192 9-207 59-252 (313)
70 KOG0281 Beta-TrCP (transducin 100.0 1.6E-29 3.5E-34 178.3 13.9 204 1-218 264-481 (499)
71 KOG0289 mRNA splicing factor [ 100.0 1.1E-28 2.5E-33 178.1 18.5 199 15-217 220-422 (506)
72 KOG0310 Conserved WD40 repeat- 100.0 1E-28 2.3E-33 180.3 18.4 205 5-216 59-270 (487)
73 KOG0772 Uncharacterized conser 100.0 6.8E-29 1.5E-33 182.8 16.5 205 9-214 263-488 (641)
74 KOG0264 Nucleosome remodeling 100.0 2.5E-28 5.4E-33 176.8 19.0 206 8-216 171-406 (422)
75 KOG1446 Histone H3 (Lys4) meth 100.0 5E-27 1.1E-31 163.3 24.3 213 3-219 3-267 (311)
76 PTZ00421 coronin; Provisional 100.0 3.8E-27 8.2E-32 182.3 26.1 201 14-216 20-247 (493)
77 KOG0296 Angio-associated migra 100.0 1.3E-27 2.8E-32 169.1 21.3 194 6-205 56-252 (399)
78 KOG0310 Conserved WD40 repeat- 100.0 2.4E-27 5.2E-32 173.3 23.2 196 3-205 99-298 (487)
79 KOG0313 Microtubule binding pr 100.0 2.3E-28 5.1E-33 173.6 17.4 211 3-217 133-379 (423)
80 KOG0640 mRNA cleavage stimulat 100.0 6.7E-29 1.5E-33 172.7 12.9 215 6-221 164-390 (430)
81 PTZ00420 coronin; Provisional 100.0 8.1E-27 1.7E-31 181.7 25.7 181 32-215 50-249 (568)
82 KOG0306 WD40-repeat-containing 100.0 1.9E-27 4.2E-32 182.1 19.3 206 9-219 368-585 (888)
83 KOG0267 Microtubule severing p 100.0 3.3E-29 7.2E-34 190.9 9.3 192 8-205 64-257 (825)
84 KOG0973 Histone transcription 100.0 2.4E-27 5.2E-32 187.8 20.0 210 5-218 60-359 (942)
85 KOG0641 WD40 repeat protein [G 100.0 1.6E-26 3.5E-31 154.5 20.8 204 9-214 84-349 (350)
86 KOG0264 Nucleosome remodeling 100.0 2.2E-27 4.7E-32 172.0 17.7 204 12-215 122-348 (422)
87 KOG2096 WD40 repeat protein [G 100.0 1.2E-26 2.7E-31 162.0 20.0 207 6-215 78-309 (420)
88 KOG1332 Vesicle coat complex C 100.0 4.7E-27 1E-31 158.3 15.9 210 5-215 47-287 (299)
89 KOG0308 Conserved WD40 repeat- 100.0 2.8E-27 6E-32 178.6 16.2 208 6-215 65-286 (735)
90 KOG0269 WD40 repeat-containing 100.0 1.8E-27 3.8E-32 182.7 14.7 198 4-205 123-329 (839)
91 KOG0269 WD40 repeat-containing 100.0 1.8E-27 3.9E-32 182.7 13.7 196 17-218 90-300 (839)
92 KOG0274 Cdc4 and related F-box 100.0 1.9E-26 4.1E-31 179.0 18.8 207 2-220 279-488 (537)
93 KOG0302 Ribosome Assembly prot 100.0 1.6E-26 3.4E-31 164.4 16.4 206 11-217 148-381 (440)
94 KOG0300 WD40 repeat-containing 99.9 8.4E-27 1.8E-31 163.0 14.6 223 5-230 139-404 (481)
95 KOG0267 Microtubule severing p 99.9 3.9E-28 8.5E-33 185.1 8.1 203 8-216 22-228 (825)
96 KOG0275 Conserved WD40 repeat- 99.9 1.2E-26 2.5E-31 162.8 14.6 209 1-212 292-507 (508)
97 KOG0647 mRNA export protein (c 99.9 1.1E-25 2.3E-30 155.9 18.8 202 12-218 25-285 (347)
98 KOG0646 WD40 repeat protein [G 99.9 1.5E-25 3.2E-30 163.2 20.2 201 14-217 81-310 (476)
99 KOG0268 Sof1-like rRNA process 99.9 1.6E-26 3.4E-31 163.7 13.0 207 6-217 58-305 (433)
100 KOG0299 U3 snoRNP-associated p 99.9 8.4E-26 1.8E-30 164.2 16.9 198 11-216 199-412 (479)
101 KOG0288 WD40 repeat protein Ti 99.9 5.5E-26 1.2E-30 163.3 14.7 211 5-225 210-428 (459)
102 KOG1332 Vesicle coat complex C 99.9 8.3E-26 1.8E-30 152.3 14.0 202 11-214 8-241 (299)
103 KOG0300 WD40 repeat-containing 99.9 1.1E-25 2.4E-30 157.4 15.0 217 1-224 177-438 (481)
104 KOG0646 WD40 repeat protein [G 99.9 3.3E-25 7.1E-30 161.4 17.9 208 1-213 110-349 (476)
105 KOG0308 Conserved WD40 repeat- 99.9 5.3E-26 1.1E-30 171.8 14.2 203 13-217 20-246 (735)
106 KOG0973 Histone transcription 99.9 2.5E-25 5.5E-30 176.5 18.1 202 13-216 12-255 (942)
107 KOG1274 WD40 repeat protein [G 99.9 1.3E-24 2.8E-29 169.9 21.2 201 11-215 10-263 (933)
108 KOG0305 Anaphase promoting com 99.9 7.4E-25 1.6E-29 165.1 18.8 191 19-218 182-380 (484)
109 KOG0641 WD40 repeat protein [G 99.9 1E-23 2.2E-28 141.2 21.8 206 13-218 31-307 (350)
110 KOG1036 Mitotic spindle checkp 99.9 1.3E-24 2.7E-29 150.9 17.9 194 9-205 89-293 (323)
111 KOG0303 Actin-binding protein 99.9 3E-24 6.5E-29 153.8 18.4 215 9-230 76-315 (472)
112 KOG0647 mRNA export protein (c 99.9 2.1E-24 4.6E-29 149.5 17.1 196 9-205 67-312 (347)
113 KOG0268 Sof1-like rRNA process 99.9 2.9E-25 6.4E-30 157.3 12.8 210 1-218 96-349 (433)
114 KOG2445 Nuclear pore complex c 99.9 2.1E-23 4.6E-28 145.0 21.7 204 11-215 10-319 (361)
115 KOG0278 Serine/threonine kinas 99.9 8.8E-26 1.9E-30 152.8 9.4 202 8-216 8-215 (334)
116 KOG0299 U3 snoRNP-associated p 99.9 4E-24 8.7E-29 155.6 18.6 197 2-205 232-444 (479)
117 KOG0301 Phospholipase A2-activ 99.9 3.3E-24 7.2E-29 163.1 18.9 197 3-215 90-289 (745)
118 KOG0639 Transducin-like enhanc 99.9 5.2E-25 1.1E-29 162.4 13.0 195 14-216 465-665 (705)
119 KOG4283 Transcription-coupled 99.9 4.5E-24 9.7E-29 147.8 16.4 202 11-219 40-281 (397)
120 KOG1408 WD40 repeat protein [F 99.9 6E-25 1.3E-29 168.3 13.1 200 13-215 458-714 (1080)
121 KOG1036 Mitotic spindle checkp 99.9 4.1E-23 9E-28 143.5 20.4 195 13-218 12-266 (323)
122 KOG0293 WD40 repeat-containing 99.9 8.9E-25 1.9E-29 157.4 12.0 169 5-175 260-514 (519)
123 KOG2096 WD40 repeat protein [G 99.9 2.6E-23 5.6E-28 145.5 18.4 199 12-212 185-400 (420)
124 KOG0302 Ribosome Assembly prot 99.9 8E-24 1.7E-28 150.8 15.8 205 4-212 201-436 (440)
125 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.3E-22 7.2E-27 148.2 24.9 209 3-218 62-283 (300)
126 KOG0639 Transducin-like enhanc 99.9 2.4E-24 5.2E-29 158.9 12.9 199 12-216 417-622 (705)
127 KOG2055 WD40 repeat protein [G 99.9 5.2E-23 1.1E-27 150.1 19.4 198 14-216 213-419 (514)
128 KOG1273 WD40 repeat protein [G 99.9 3.7E-23 8.1E-28 144.4 17.2 211 3-216 54-324 (405)
129 KOG0270 WD40 repeat-containing 99.9 1.5E-23 3.2E-28 152.1 15.7 200 11-216 240-451 (463)
130 KOG4283 Transcription-coupled 99.9 3.2E-23 6.9E-28 143.6 16.3 164 11-178 98-280 (397)
131 KOG1274 WD40 repeat protein [G 99.9 5.7E-23 1.2E-27 160.8 19.4 188 12-203 94-287 (933)
132 KOG2048 WD40 repeat protein [G 99.9 5.2E-22 1.1E-26 150.9 23.7 200 14-219 25-238 (691)
133 KOG1539 WD repeat protein [Gen 99.9 4.9E-23 1.1E-27 159.8 18.3 193 14-214 448-648 (910)
134 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.5E-22 1.2E-26 147.0 23.6 208 2-218 19-241 (300)
135 KOG1273 WD40 repeat protein [G 99.9 6.4E-22 1.4E-26 138.3 18.4 192 17-214 26-226 (405)
136 KOG4378 Nuclear protein COP1 [ 99.9 4.7E-22 1E-26 146.7 18.1 189 4-198 111-305 (673)
137 KOG0294 WD40 repeat-containing 99.9 1E-21 2.2E-26 137.2 18.5 172 2-176 71-283 (362)
138 KOG1063 RNA polymerase II elon 99.9 3.1E-22 6.7E-27 152.6 17.3 208 7-214 518-763 (764)
139 KOG2055 WD40 repeat protein [G 99.9 3.8E-22 8.3E-27 145.6 15.6 208 4-217 247-470 (514)
140 KOG4328 WD40 protein [Function 99.9 2.6E-22 5.5E-27 146.3 14.2 207 7-217 227-453 (498)
141 KOG0307 Vesicle coat complex C 99.9 8.4E-23 1.8E-27 163.2 12.2 210 4-217 106-330 (1049)
142 KOG0270 WD40 repeat-containing 99.9 9.8E-22 2.1E-26 142.7 16.6 186 26-218 192-408 (463)
143 KOG0301 Phospholipase A2-activ 99.9 9.4E-22 2E-26 150.0 16.7 193 9-214 52-249 (745)
144 KOG2048 WD40 repeat protein [G 99.9 8.9E-21 1.9E-25 144.3 21.5 204 9-216 63-277 (691)
145 KOG4328 WD40 protein [Function 99.9 7.7E-22 1.7E-26 143.8 15.0 206 5-214 177-399 (498)
146 KOG0642 Cell-cycle nuclear pro 99.9 9.5E-22 2.1E-26 146.7 15.8 209 9-218 289-565 (577)
147 KOG1539 WD repeat protein [Gen 99.9 2.2E-21 4.9E-26 150.7 17.6 153 60-219 454-611 (910)
148 KOG2919 Guanine nucleotide-bin 99.9 4.2E-21 9.1E-26 134.7 17.1 199 3-207 142-361 (406)
149 KOG0321 WD40 repeat-containing 99.9 3.7E-21 8E-26 145.6 17.8 212 7-218 93-351 (720)
150 KOG4378 Nuclear protein COP1 [ 99.9 1E-21 2.3E-26 144.9 13.8 194 18-217 83-283 (673)
151 KOG1034 Transcriptional repres 99.9 7.7E-22 1.7E-26 138.5 12.5 210 2-213 123-380 (385)
152 KOG1063 RNA polymerase II elon 99.9 2.4E-21 5.2E-26 147.8 14.6 207 8-216 355-650 (764)
153 KOG0321 WD40 repeat-containing 99.9 5.7E-21 1.2E-25 144.6 16.4 214 3-216 131-393 (720)
154 KOG0307 Vesicle coat complex C 99.9 6.6E-22 1.4E-26 158.2 11.7 203 14-218 64-288 (1049)
155 KOG1188 WD40 repeat protein [G 99.9 1.8E-20 3.9E-25 132.2 17.0 189 27-217 41-245 (376)
156 KOG0771 Prolactin regulatory e 99.9 1.1E-20 2.3E-25 136.6 16.2 195 18-215 148-355 (398)
157 KOG1408 WD40 repeat protein [F 99.9 9.8E-21 2.1E-25 145.5 16.7 203 12-219 367-676 (1080)
158 KOG0650 WD40 repeat nucleolar 99.9 2.4E-20 5.3E-25 140.4 18.2 205 8-216 394-639 (733)
159 KOG2106 Uncharacterized conser 99.9 8.3E-20 1.8E-24 135.1 20.4 158 8-173 362-520 (626)
160 KOG0322 G-protein beta subunit 99.9 6.2E-21 1.3E-25 130.3 11.8 144 68-213 167-322 (323)
161 KOG1188 WD40 repeat protein [G 99.9 4.4E-20 9.6E-25 130.3 15.2 212 2-215 58-347 (376)
162 KOG2106 Uncharacterized conser 99.9 3.7E-19 8E-24 131.7 20.6 199 9-216 240-479 (626)
163 KOG1009 Chromatin assembly com 99.9 5.1E-20 1.1E-24 132.6 15.6 122 6-131 57-196 (434)
164 KOG2919 Guanine nucleotide-bin 99.9 1.1E-19 2.3E-24 127.7 16.0 198 16-216 51-283 (406)
165 PRK01742 tolB translocation pr 99.8 2.8E-19 6E-24 138.4 19.8 202 7-221 196-411 (429)
166 KOG1538 Uncharacterized conser 99.8 3E-19 6.5E-24 136.7 19.2 211 2-218 41-297 (1081)
167 KOG2110 Uncharacterized conser 99.8 9.4E-18 2E-22 119.8 23.4 197 16-219 48-253 (391)
168 KOG0649 WD40 repeat protein [G 99.8 1.2E-18 2.5E-23 118.2 17.8 202 8-221 56-281 (325)
169 KOG1007 WD repeat protein TSSC 99.8 9.3E-19 2E-23 121.3 17.3 204 4-213 112-360 (370)
170 KOG1009 Chromatin assembly com 99.8 1E-19 2.2E-24 131.1 13.0 191 14-206 13-250 (434)
171 KOG0290 Conserved WD40 repeat- 99.8 5.7E-19 1.2E-23 122.4 16.0 204 12-218 94-322 (364)
172 KOG1310 WD40 repeat protein [G 99.8 1.4E-19 2.9E-24 135.5 13.5 213 5-217 41-306 (758)
173 PRK03629 tolB translocation pr 99.8 1.3E-17 2.8E-22 128.9 23.2 205 8-222 192-414 (429)
174 KOG1445 Tumor-specific antigen 99.8 3.3E-19 7.1E-24 135.7 13.7 197 15-216 628-846 (1012)
175 KOG0303 Actin-binding protein 99.8 5.1E-19 1.1E-23 127.3 13.5 162 51-215 76-250 (472)
176 KOG1240 Protein kinase contain 99.8 3.4E-18 7.4E-23 138.3 19.1 218 3-220 1037-1279(1431)
177 PRK04922 tolB translocation pr 99.8 1.3E-17 2.9E-22 129.3 21.8 207 5-221 194-418 (433)
178 KOG1524 WD40 repeat-containing 99.8 1.5E-18 3.3E-23 129.6 14.8 182 3-206 93-276 (737)
179 KOG1007 WD repeat protein TSSC 99.8 6.2E-18 1.3E-22 117.3 16.7 204 8-214 57-289 (370)
180 KOG1963 WD40 repeat protein [G 99.8 2.2E-17 4.7E-22 129.5 21.7 212 2-216 45-377 (792)
181 KOG0649 WD40 repeat protein [G 99.8 5.1E-18 1.1E-22 115.1 15.9 198 14-218 10-239 (325)
182 KOG0290 Conserved WD40 repeat- 99.8 8.5E-18 1.8E-22 116.7 17.2 196 12-210 148-361 (364)
183 PRK05137 tolB translocation pr 99.8 3.9E-17 8.5E-22 126.8 23.2 208 4-221 191-419 (435)
184 PF08662 eIF2A: Eukaryotic tra 99.8 1E-17 2.2E-22 115.4 17.7 153 60-221 11-186 (194)
185 PRK11028 6-phosphogluconolacto 99.8 6E-17 1.3E-21 121.7 23.4 199 16-215 81-305 (330)
186 KOG1034 Transcriptional repres 99.8 1.7E-18 3.8E-23 121.8 13.9 203 13-218 88-341 (385)
187 PRK02889 tolB translocation pr 99.8 3.9E-17 8.4E-22 126.3 22.5 206 4-217 185-406 (427)
188 KOG0644 Uncharacterized conser 99.8 1E-19 2.3E-24 141.9 7.8 206 3-216 179-428 (1113)
189 KOG4227 WD40 repeat protein [G 99.8 6.6E-18 1.4E-22 122.0 15.8 216 6-223 48-283 (609)
190 PRK11028 6-phosphogluconolacto 99.8 1.9E-16 4.1E-21 119.0 24.2 206 7-215 28-259 (330)
191 COG2319 FOG: WD40 repeat [Gene 99.8 1.4E-16 3.1E-21 123.0 23.7 206 5-217 146-362 (466)
192 KOG1523 Actin-related protein 99.8 2.6E-17 5.6E-22 115.6 16.4 203 12-216 8-238 (361)
193 KOG2110 Uncharacterized conser 99.8 5.5E-17 1.2E-21 115.9 17.8 154 15-175 88-249 (391)
194 COG2319 FOG: WD40 repeat [Gene 99.8 4.1E-16 8.9E-21 120.4 24.5 203 9-218 60-275 (466)
195 KOG1523 Actin-related protein 99.8 1.8E-17 4E-22 116.3 14.6 199 5-205 46-268 (361)
196 KOG0642 Cell-cycle nuclear pro 99.8 6.6E-18 1.4E-22 126.5 13.0 180 5-186 335-573 (577)
197 KOG1517 Guanine nucleotide bin 99.8 3.2E-17 7E-22 131.2 17.6 195 19-216 1170-1383(1387)
198 KOG2139 WD40 repeat protein [G 99.8 9.3E-17 2E-21 114.7 17.8 196 15-215 99-310 (445)
199 KOG2445 Nuclear pore complex c 99.8 9.8E-17 2.1E-21 112.2 17.4 160 57-216 16-258 (361)
200 KOG1445 Tumor-specific antigen 99.8 1.2E-17 2.7E-22 127.3 13.2 204 5-213 70-290 (1012)
201 KOG1538 Uncharacterized conser 99.8 8E-17 1.7E-21 123.6 17.4 199 16-216 14-254 (1081)
202 KOG0650 WD40 repeat nucleolar 99.8 2.2E-17 4.8E-22 124.8 13.7 194 11-211 518-732 (733)
203 PF08662 eIF2A: Eukaryotic tra 99.8 4.4E-16 9.6E-21 107.3 19.0 153 18-182 9-186 (194)
204 KOG2394 WD40 protein DMR-N9 [G 99.8 3.4E-17 7.4E-22 122.3 13.8 165 14-196 219-384 (636)
205 KOG3881 Uncharacterized conser 99.8 2.4E-16 5.1E-21 113.5 17.0 196 13-216 104-322 (412)
206 KOG1587 Cytoplasmic dynein int 99.7 2.6E-16 5.6E-21 122.3 18.0 203 11-215 288-517 (555)
207 KOG1587 Cytoplasmic dynein int 99.7 3.6E-16 7.8E-21 121.5 18.7 206 14-219 242-477 (555)
208 TIGR02800 propeller_TolB tol-p 99.7 1.6E-15 3.4E-20 117.7 22.1 203 7-219 182-402 (417)
209 PRK00178 tolB translocation pr 99.7 3.7E-15 8E-20 115.9 24.0 205 7-221 191-413 (430)
210 KOG1517 Guanine nucleotide bin 99.7 3.9E-16 8.5E-21 125.1 18.4 205 15-222 1110-1341(1387)
211 KOG1524 WD40 repeat-containing 99.7 8.1E-17 1.8E-21 120.5 13.3 179 27-216 76-257 (737)
212 KOG0771 Prolactin regulatory e 99.7 4.8E-17 1E-21 118.0 11.2 159 58-221 148-318 (398)
213 KOG0644 Uncharacterized conser 99.7 1.8E-17 3.8E-22 129.7 9.3 206 1-213 219-467 (1113)
214 PRK04792 tolB translocation pr 99.7 9.4E-15 2E-19 113.6 23.0 202 10-221 213-432 (448)
215 KOG4547 WD40 repeat-containing 99.7 3.9E-15 8.4E-20 112.5 19.9 186 24-215 3-221 (541)
216 KOG4227 WD40 repeat protein [G 99.7 3.3E-15 7.1E-20 108.2 18.6 208 5-214 95-387 (609)
217 KOG1334 WD40 repeat protein [G 99.7 7E-17 1.5E-21 119.3 10.1 119 100-218 336-470 (559)
218 KOG2111 Uncharacterized conser 99.7 6.9E-15 1.5E-19 103.5 19.4 178 36-217 75-259 (346)
219 KOG2321 WD40 repeat protein [G 99.7 2.4E-15 5.1E-20 113.5 18.2 208 6-218 44-306 (703)
220 KOG1272 WD40-repeat-containing 99.7 6.8E-17 1.5E-21 118.7 9.7 204 18-230 133-340 (545)
221 PRK01742 tolB translocation pr 99.7 1.2E-15 2.6E-20 118.3 16.9 170 17-197 250-426 (429)
222 PRK01029 tolB translocation pr 99.7 1.1E-14 2.4E-19 112.4 21.5 210 9-222 179-411 (428)
223 KOG1963 WD40 repeat protein [G 99.7 5.5E-15 1.2E-19 116.2 19.0 207 8-215 245-539 (792)
224 KOG2394 WD40 protein DMR-N9 [G 99.7 1.2E-15 2.6E-20 114.2 14.5 200 18-218 127-366 (636)
225 PRK03629 tolB translocation pr 99.7 8.6E-15 1.9E-19 113.3 18.8 172 16-197 244-428 (429)
226 KOG1272 WD40-repeat-containing 99.7 9.3E-17 2E-21 118.0 7.2 189 15-212 171-360 (545)
227 KOG4497 Uncharacterized conser 99.7 3.4E-15 7.4E-20 105.8 14.4 184 19-211 13-237 (447)
228 PF02239 Cytochrom_D1: Cytochr 99.7 4.1E-14 8.8E-19 106.8 21.3 216 3-218 25-351 (369)
229 KOG0322 G-protein beta subunit 99.7 1E-15 2.2E-20 105.1 11.4 158 14-173 150-322 (323)
230 KOG2111 Uncharacterized conser 99.7 3.5E-14 7.7E-19 100.0 18.3 158 13-175 93-257 (346)
231 KOG2139 WD40 repeat protein [G 99.7 4.1E-14 8.9E-19 101.4 18.3 198 11-214 193-431 (445)
232 KOG0974 WD-repeat protein WDR6 99.7 1.3E-14 2.7E-19 116.2 16.6 193 17-217 90-291 (967)
233 PRK05137 tolB translocation pr 99.6 2.3E-13 5E-18 105.9 23.1 173 36-218 182-370 (435)
234 KOG3881 Uncharacterized conser 99.6 4.3E-14 9.4E-19 102.1 16.0 174 19-197 153-342 (412)
235 PF02239 Cytochrom_D1: Cytochr 99.6 5.6E-13 1.2E-17 100.7 22.7 187 27-218 6-206 (369)
236 PRK04922 tolB translocation pr 99.6 1.5E-13 3.2E-18 106.9 20.1 177 36-221 184-375 (433)
237 PRK02889 tolB translocation pr 99.6 4.3E-13 9.3E-18 104.0 20.2 176 36-221 176-367 (427)
238 KOG1354 Serine/threonine prote 99.6 2.1E-13 4.5E-18 97.3 15.9 202 14-216 25-303 (433)
239 KOG1064 RAVE (regulator of V-A 99.6 1.6E-14 3.5E-19 121.5 11.8 195 11-223 2205-2408(2439)
240 PRK04043 tolB translocation pr 99.6 3.5E-12 7.6E-17 98.1 23.1 195 16-222 189-408 (419)
241 PF10282 Lactonase: Lactonase, 99.6 6.1E-12 1.3E-16 95.0 23.9 198 16-214 88-322 (345)
242 TIGR02800 propeller_TolB tol-p 99.6 2.6E-12 5.7E-17 99.8 22.4 174 36-218 170-358 (417)
243 KOG2321 WD40 repeat protein [G 99.6 1.8E-13 3.8E-18 103.7 13.3 170 1-176 162-345 (703)
244 KOG4497 Uncharacterized conser 99.5 1.1E-12 2.4E-17 93.3 15.9 203 9-217 86-394 (447)
245 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.8E-11 3.8E-16 90.9 22.9 195 22-218 53-334 (352)
246 KOG1409 Uncharacterized conser 99.5 7.6E-13 1.6E-17 94.4 14.8 217 4-220 14-276 (404)
247 COG2706 3-carboxymuconate cycl 99.5 5.7E-11 1.2E-15 85.6 23.7 202 12-215 37-275 (346)
248 PF10282 Lactonase: Lactonase, 99.5 5.1E-11 1.1E-15 90.0 24.8 199 16-215 38-276 (345)
249 PRK00178 tolB translocation pr 99.5 1.5E-11 3.2E-16 95.9 22.2 175 37-220 180-369 (430)
250 PRK01029 tolB translocation pr 99.5 1.2E-11 2.6E-16 95.8 19.9 179 15-198 231-426 (428)
251 PRK04792 tolB translocation pr 99.5 3.1E-11 6.8E-16 94.1 21.3 174 37-219 199-387 (448)
252 KOG1240 Protein kinase contain 99.5 5E-12 1.1E-16 103.5 16.9 176 41-218 1034-1229(1431)
253 KOG2315 Predicted translation 99.5 5.2E-11 1.1E-15 90.2 20.8 195 13-219 164-395 (566)
254 KOG2695 WD40 repeat protein [G 99.5 5.7E-13 1.2E-17 95.2 9.6 167 30-196 228-402 (425)
255 KOG4547 WD40 repeat-containing 99.4 6.7E-12 1.4E-16 95.3 14.8 158 64-222 3-180 (541)
256 KOG0280 Uncharacterized conser 99.4 9.7E-12 2.1E-16 87.1 14.3 191 17-213 124-332 (339)
257 KOG4190 Uncharacterized conser 99.4 5E-13 1.1E-17 101.4 8.3 201 7-212 728-946 (1034)
258 KOG1354 Serine/threonine prote 99.4 2.7E-11 5.9E-16 86.8 15.8 201 15-218 85-363 (433)
259 KOG1310 WD40 repeat protein [G 99.4 2.2E-12 4.8E-17 97.5 10.1 122 94-216 44-180 (758)
260 KOG3914 WD repeat protein WDR4 99.4 1.1E-11 2.5E-16 90.1 13.1 162 17-182 65-231 (390)
261 KOG0280 Uncharacterized conser 99.4 7.6E-11 1.6E-15 82.7 16.2 199 15-217 70-287 (339)
262 KOG2314 Translation initiation 99.4 1.4E-10 3E-15 88.1 18.7 202 15-217 250-576 (698)
263 PLN02919 haloacid dehalogenase 99.4 9.6E-10 2.1E-14 93.6 25.8 202 16-218 625-892 (1057)
264 KOG1409 Uncharacterized conser 99.4 8.2E-11 1.8E-15 84.3 15.9 166 5-175 105-271 (404)
265 COG4946 Uncharacterized protei 99.4 2.6E-10 5.6E-15 85.3 19.0 172 25-205 331-507 (668)
266 COG2706 3-carboxymuconate cycl 99.4 4.6E-10 1E-14 81.0 19.7 180 35-216 15-223 (346)
267 KOG2066 Vacuolar assembly/sort 99.4 3.2E-11 7E-16 95.0 14.2 183 15-214 40-233 (846)
268 COG4946 Uncharacterized protei 99.4 9.1E-10 2E-14 82.4 21.0 142 12-160 357-504 (668)
269 KOG0974 WD-repeat protein WDR6 99.4 1.8E-11 3.9E-16 98.6 12.9 147 22-175 141-289 (967)
270 KOG4532 WD40-like repeat conta 99.4 4.1E-10 9E-15 78.3 17.4 192 28-220 130-337 (344)
271 KOG4532 WD40-like repeat conta 99.3 6.9E-10 1.5E-14 77.2 18.2 195 19-217 72-285 (344)
272 PF07433 DUF1513: Protein of u 99.3 3.1E-09 6.7E-14 76.7 22.0 198 17-219 7-252 (305)
273 PF15492 Nbas_N: Neuroblastoma 99.3 8.1E-09 1.8E-13 72.6 22.8 200 20-220 3-265 (282)
274 KOG3914 WD repeat protein WDR4 99.3 1.3E-10 2.8E-15 84.7 13.8 155 60-219 68-228 (390)
275 COG5170 CDC55 Serine/threonine 99.3 1.4E-10 3.1E-15 82.3 13.3 203 14-217 26-312 (460)
276 KOG0882 Cyclophilin-related pe 99.3 6.7E-11 1.5E-15 87.6 12.0 219 5-225 44-316 (558)
277 PF00400 WD40: WD domain, G-be 99.3 3.7E-12 8E-17 64.1 3.8 39 4-42 1-39 (39)
278 KOG2315 Predicted translation 99.2 2E-09 4.3E-14 81.9 17.4 166 19-197 222-411 (566)
279 PRK04043 tolB translocation pr 99.2 1.1E-08 2.4E-13 79.0 21.1 176 36-222 169-365 (419)
280 PF15492 Nbas_N: Neuroblastoma 99.2 1.3E-08 2.7E-13 71.7 18.9 169 17-186 46-271 (282)
281 PF08450 SGL: SMP-30/Gluconola 99.2 4.7E-08 1E-12 70.6 22.8 195 19-219 4-218 (246)
282 KOG0309 Conserved WD40 repeat- 99.2 1.3E-10 2.7E-15 91.3 9.3 204 8-215 108-340 (1081)
283 PF04762 IKI3: IKI3 family; I 99.2 1.3E-08 2.8E-13 85.5 21.6 198 13-215 74-334 (928)
284 PLN02919 haloacid dehalogenase 99.2 1.3E-08 2.8E-13 86.9 21.6 160 18-178 686-892 (1057)
285 KOG1275 PAB-dependent poly(A) 99.2 1.8E-09 3.9E-14 86.7 14.8 179 26-213 147-341 (1118)
286 KOG1832 HIV-1 Vpr-binding prot 99.2 5.5E-11 1.2E-15 95.1 5.8 195 5-215 1092-1292(1516)
287 PF07433 DUF1513: Protein of u 99.2 7E-08 1.5E-12 69.8 21.1 184 20-208 56-279 (305)
288 TIGR02658 TTQ_MADH_Hv methylam 99.2 6.8E-08 1.5E-12 72.2 21.7 162 18-183 108-339 (352)
289 PF08450 SGL: SMP-30/Gluconola 99.1 1.7E-07 3.6E-12 67.8 23.1 178 17-203 42-242 (246)
290 KOG2114 Vacuolar assembly/sort 99.1 2.8E-08 6E-13 79.6 19.3 195 21-216 30-245 (933)
291 KOG2041 WD40 repeat protein [G 99.1 1.5E-09 3.3E-14 85.2 11.9 194 6-205 63-277 (1189)
292 KOG2314 Translation initiation 99.1 1.3E-08 2.7E-13 77.8 16.4 182 18-204 214-411 (698)
293 PF13360 PQQ_2: PQQ-like domai 99.1 5.9E-08 1.3E-12 69.7 19.5 185 25-217 35-233 (238)
294 KOG0309 Conserved WD40 repeat- 99.1 1.4E-09 3E-14 85.6 10.6 200 14-216 24-234 (1081)
295 COG5354 Uncharacterized protei 99.1 1.1E-07 2.4E-12 71.9 20.0 193 15-219 174-400 (561)
296 PF04762 IKI3: IKI3 family; I 99.1 1.2E-07 2.6E-12 79.8 22.4 200 13-216 208-458 (928)
297 KOG1064 RAVE (regulator of V-A 99.1 1.5E-09 3.3E-14 92.7 10.8 184 27-218 2181-2370(2439)
298 KOG2041 WD40 repeat protein [G 99.1 1.8E-09 3.9E-14 84.8 10.2 121 94-216 65-188 (1189)
299 COG5354 Uncharacterized protei 99.0 9.2E-08 2E-12 72.4 17.6 196 15-217 72-309 (561)
300 KOG4190 Uncharacterized conser 99.0 2.3E-09 4.9E-14 82.0 9.4 153 64-218 745-910 (1034)
301 KOG4714 Nucleoporin [Nuclear s 99.0 1.3E-09 2.7E-14 75.5 6.2 146 25-175 100-255 (319)
302 COG5170 CDC55 Serine/threonine 99.0 1.9E-08 4.1E-13 71.7 12.3 195 15-212 86-365 (460)
303 KOG1275 PAB-dependent poly(A) 99.0 1.1E-08 2.3E-13 82.4 11.6 150 17-173 180-341 (1118)
304 KOG2695 WD40 repeat protein [G 99.0 5.9E-09 1.3E-13 75.1 8.8 140 70-218 228-380 (425)
305 KOG0882 Cyclophilin-related pe 99.0 1.9E-08 4.2E-13 75.0 11.4 209 12-224 7-241 (558)
306 PF06977 SdiA-regulated: SdiA- 98.9 1.1E-06 2.4E-11 62.7 19.7 200 9-210 16-246 (248)
307 COG0823 TolB Periplasmic compo 98.9 9E-08 2E-12 73.8 15.3 190 7-205 185-388 (425)
308 KOG1645 RING-finger-containing 98.9 6.8E-08 1.5E-12 71.1 13.8 82 7-88 186-270 (463)
309 KOG1334 WD40 repeat protein [G 98.9 4.1E-09 8.8E-14 79.0 7.4 160 16-177 283-469 (559)
310 KOG1912 WD40 repeat protein [G 98.9 2.3E-07 5E-12 73.9 17.1 209 3-215 44-305 (1062)
311 KOG2066 Vacuolar assembly/sort 98.9 5.3E-07 1.2E-11 72.0 18.7 157 10-174 54-233 (846)
312 TIGR03300 assembly_YfgL outer 98.9 4.6E-07 9.9E-12 69.7 18.4 181 25-217 104-300 (377)
313 KOG4714 Nucleoporin [Nuclear s 98.9 1.7E-08 3.6E-13 70.2 9.1 201 9-215 30-255 (319)
314 TIGR03300 assembly_YfgL outer 98.9 7.9E-07 1.7E-11 68.4 18.8 149 26-182 65-216 (377)
315 PF13360 PQQ_2: PQQ-like domai 98.9 1.2E-06 2.7E-11 62.8 18.7 145 35-185 2-151 (238)
316 PF11768 DUF3312: Protein of u 98.8 1.1E-06 2.3E-11 68.2 17.9 91 124-217 238-332 (545)
317 KOG1920 IkappaB kinase complex 98.8 1.5E-06 3.3E-11 72.5 19.6 198 14-215 68-323 (1265)
318 KOG3621 WD40 repeat-containing 98.8 1.3E-07 2.7E-12 74.4 12.2 119 13-131 32-155 (726)
319 PF00400 WD40: WD domain, G-be 98.8 3.1E-08 6.8E-13 49.5 5.9 36 93-128 4-39 (39)
320 KOG2114 Vacuolar assembly/sort 98.8 1.1E-06 2.5E-11 70.7 16.9 181 6-188 56-258 (933)
321 PRK02888 nitrous-oxide reducta 98.8 2.6E-06 5.5E-11 67.6 18.6 181 22-205 200-450 (635)
322 PF11768 DUF3312: Protein of u 98.8 1.6E-07 3.4E-12 72.6 11.1 72 13-85 258-330 (545)
323 KOG1008 Uncharacterized conser 98.7 6.9E-09 1.5E-13 80.5 2.8 197 14-214 56-275 (783)
324 PF04053 Coatomer_WDAD: Coatom 98.7 2.6E-06 5.5E-11 66.2 16.3 176 13-209 31-218 (443)
325 COG3391 Uncharacterized conser 98.7 4.8E-05 1E-09 58.6 22.3 194 18-218 77-287 (381)
326 PF08553 VID27: VID27 cytoplas 98.6 3E-06 6.6E-11 69.5 15.4 137 33-173 501-646 (794)
327 KOG3621 WD40 repeat-containing 98.6 4.6E-07 9.9E-12 71.4 10.2 153 60-216 39-199 (726)
328 KOG1912 WD40 repeat protein [G 98.6 2.3E-06 5.1E-11 68.4 13.7 152 14-173 15-185 (1062)
329 PF08596 Lgl_C: Lethal giant l 98.6 2.9E-05 6.2E-10 59.6 18.8 199 10-211 82-332 (395)
330 KOG1008 Uncharacterized conser 98.5 6.1E-08 1.3E-12 75.5 2.6 159 10-174 98-275 (783)
331 PRK11138 outer membrane biogen 98.5 4.9E-05 1.1E-09 59.0 18.4 182 26-217 160-356 (394)
332 PF06433 Me-amine-dh_H: Methyl 98.5 0.00018 3.9E-09 53.3 19.9 198 20-219 100-325 (342)
333 PF04841 Vps16_N: Vps16, N-ter 98.5 0.00013 2.8E-09 56.7 20.3 197 4-212 70-285 (410)
334 PF04053 Coatomer_WDAD: Coatom 98.5 4.3E-06 9.4E-11 64.9 12.0 139 58-216 36-175 (443)
335 COG0823 TolB Periplasmic compo 98.5 1.8E-05 3.8E-10 61.4 15.2 148 60-216 198-360 (425)
336 PRK02888 nitrous-oxide reducta 98.5 5.3E-05 1.2E-09 60.4 17.9 185 29-217 69-354 (635)
337 PRK11138 outer membrane biogen 98.5 9.2E-05 2E-09 57.4 19.1 173 27-212 206-392 (394)
338 PF00930 DPPIV_N: Dipeptidyl p 98.4 4.2E-05 9E-10 58.4 16.5 195 23-221 1-275 (353)
339 KOG3617 WD40 and TPR repeat-co 98.4 7.1E-07 1.5E-11 72.1 6.8 107 104-214 19-131 (1416)
340 KOG1920 IkappaB kinase complex 98.4 0.00011 2.4E-09 62.0 19.0 163 60-228 74-288 (1265)
341 KOG1832 HIV-1 Vpr-binding prot 98.4 7E-08 1.5E-12 78.0 0.7 186 2-204 1131-1319(1516)
342 KOG3617 WD40 and TPR repeat-co 98.4 4.7E-06 1E-10 67.6 10.5 108 18-130 19-131 (1416)
343 COG3391 Uncharacterized conser 98.4 0.00034 7.3E-09 54.0 20.4 180 16-196 117-308 (381)
344 COG3490 Uncharacterized protei 98.4 0.00029 6.3E-09 50.5 18.1 199 19-220 72-316 (366)
345 smart00320 WD40 WD40 repeats. 98.4 3.1E-07 6.8E-12 45.2 2.7 39 4-42 2-40 (40)
346 COG3204 Uncharacterized protei 98.3 0.00039 8.4E-09 50.1 18.6 201 10-211 81-309 (316)
347 KOG4640 Anaphase-promoting com 98.3 4.8E-06 1E-10 65.1 9.1 93 101-196 21-115 (665)
348 PF02897 Peptidase_S9_N: Proly 98.3 0.00085 1.8E-08 52.5 22.2 195 16-214 125-357 (414)
349 PF08553 VID27: VID27 cytoplas 98.3 4.1E-05 8.9E-10 63.1 14.2 133 74-213 502-646 (794)
350 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00087 1.9E-08 51.3 20.2 187 14-203 42-297 (353)
351 PF14783 BBS2_Mid: Ciliary BBS 98.3 0.00022 4.8E-09 43.8 14.2 99 17-125 2-109 (111)
352 KOG1645 RING-finger-containing 98.3 7.4E-05 1.6E-09 55.7 13.3 158 38-202 175-346 (463)
353 PRK13616 lipoprotein LpqB; Pro 98.2 0.00041 9E-09 56.3 18.3 172 15-197 350-551 (591)
354 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.00089 1.9E-08 47.5 16.8 123 66-196 23-145 (354)
355 KOG4640 Anaphase-promoting com 98.2 1.4E-05 3E-10 62.6 8.7 90 59-154 25-115 (665)
356 COG3386 Gluconolactonase [Carb 98.1 0.0016 3.6E-08 48.4 19.4 172 25-204 76-273 (307)
357 PF03178 CPSF_A: CPSF A subuni 98.1 0.0024 5.1E-08 48.2 19.8 173 37-215 3-203 (321)
358 PF00780 CNH: CNH domain; Int 98.0 0.0024 5.2E-08 47.0 20.9 148 24-179 5-170 (275)
359 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0035 7.5E-08 48.9 19.0 185 20-215 34-247 (410)
360 PF08596 Lgl_C: Lethal giant l 98.0 0.00044 9.6E-09 53.3 13.6 151 16-174 3-173 (395)
361 PHA02713 hypothetical protein; 98.0 0.0013 2.8E-08 53.4 16.8 194 25-226 303-545 (557)
362 PRK13616 lipoprotein LpqB; Pro 98.0 0.0032 7E-08 51.3 18.9 149 58-217 353-530 (591)
363 KOG2395 Protein involved in va 98.0 0.00029 6.4E-09 54.6 12.2 140 69-214 349-500 (644)
364 cd00216 PQQ_DH Dehydrogenases 98.0 0.0047 1E-07 49.5 19.4 155 26-183 61-273 (488)
365 cd00216 PQQ_DH Dehydrogenases 98.0 0.0028 6E-08 50.8 18.2 155 21-184 223-434 (488)
366 COG3386 Gluconolactonase [Carb 98.0 0.0036 7.7E-08 46.7 18.4 193 21-219 31-248 (307)
367 PF05096 Glu_cyclase_2: Glutam 98.0 0.0029 6.2E-08 45.5 21.9 180 17-205 47-249 (264)
368 KOG2079 Vacuolar assembly/sort 98.0 7.7E-05 1.7E-09 62.2 9.4 103 111-214 98-203 (1206)
369 PF03178 CPSF_A: CPSF A subuni 98.0 0.0042 9E-08 46.9 19.4 143 26-174 42-202 (321)
370 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0029 6.3E-08 45.0 17.5 137 26-169 23-160 (354)
371 KOG4441 Proteins containing BT 97.9 0.0037 8.1E-08 50.8 17.7 190 19-218 327-550 (571)
372 PF00780 CNH: CNH domain; Int 97.8 0.0029 6.3E-08 46.6 15.5 148 64-221 5-172 (275)
373 PF06433 Me-amine-dh_H: Methyl 97.8 0.0042 9.1E-08 46.3 15.4 156 27-185 148-331 (342)
374 PHA03098 kelch-like protein; P 97.8 0.01 2.3E-07 48.2 19.2 187 25-219 294-516 (534)
375 KOG4441 Proteins containing BT 97.8 0.0049 1.1E-07 50.2 16.9 189 26-221 285-506 (571)
376 COG3490 Uncharacterized protei 97.7 0.0038 8.3E-08 45.0 13.4 109 103-211 70-186 (366)
377 smart00320 WD40 WD40 repeats. 97.7 0.00015 3.2E-09 35.0 5.0 34 95-128 7-40 (40)
378 PF05694 SBP56: 56kDa selenium 97.7 0.0099 2.1E-07 45.8 16.0 188 26-217 87-345 (461)
379 TIGR02604 Piru_Ver_Nterm putat 97.7 0.0074 1.6E-07 46.5 15.8 143 59-205 18-202 (367)
380 KOG2079 Vacuolar assembly/sort 97.7 0.0004 8.7E-09 58.2 8.8 104 65-173 98-202 (1206)
381 PF12894 Apc4_WD40: Anaphase-p 97.7 0.00024 5.1E-09 36.6 5.0 34 14-48 11-44 (47)
382 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0045 9.8E-08 38.1 12.7 90 67-169 16-109 (111)
383 PF12894 Apc4_WD40: Anaphase-p 97.6 0.00025 5.4E-09 36.5 4.8 33 145-178 12-44 (47)
384 PF12234 Rav1p_C: RAVE protein 97.6 0.006 1.3E-07 49.6 14.4 112 104-216 33-158 (631)
385 KOG2444 WD40 repeat protein [G 97.5 0.00057 1.2E-08 47.4 7.1 141 68-215 32-178 (238)
386 PHA02713 hypothetical protein; 97.5 0.0028 6.1E-08 51.5 12.1 156 25-186 351-545 (557)
387 PF14583 Pectate_lyase22: Olig 97.5 0.023 5E-07 43.3 18.9 180 18-204 39-255 (386)
388 PF02897 Peptidase_S9_N: Proly 97.5 0.028 6.1E-07 44.1 17.7 112 60-176 129-262 (414)
389 KOG2395 Protein involved in va 97.5 0.0041 8.9E-08 48.6 12.0 139 29-173 349-499 (644)
390 PF14583 Pectate_lyase22: Olig 97.5 0.01 2.2E-07 45.2 13.6 166 42-215 16-223 (386)
391 PF05694 SBP56: 56kDa selenium 97.5 0.024 5.2E-07 43.8 15.3 189 22-212 137-399 (461)
392 PF06977 SdiA-regulated: SdiA- 97.4 0.02 4.4E-07 41.3 13.8 118 96-215 17-148 (248)
393 KOG3630 Nuclear pore complex, 97.4 0.0062 1.3E-07 51.9 12.1 184 19-205 46-262 (1405)
394 KOG2280 Vacuolar assembly/sort 97.3 0.044 9.5E-07 45.0 15.9 204 3-215 72-288 (829)
395 PHA02790 Kelch-like protein; P 97.3 0.06 1.3E-06 43.2 18.4 180 26-216 272-472 (480)
396 KOG2444 WD40 repeat protein [G 97.3 0.0012 2.5E-08 45.9 6.4 142 29-174 33-177 (238)
397 PF10647 Gmad1: Lipoprotein Lp 97.3 0.037 8E-07 40.3 19.4 158 57-221 26-204 (253)
398 PF14870 PSII_BNR: Photosynthe 97.3 0.043 9.3E-07 40.9 14.9 154 14-171 144-301 (302)
399 COG3823 Glutamine cyclotransfe 97.3 0.02 4.3E-07 39.6 11.7 173 25-205 55-248 (262)
400 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.3 0.075 1.6E-06 43.1 18.4 187 26-218 69-337 (527)
401 PF10647 Gmad1: Lipoprotein Lp 97.3 0.041 8.8E-07 40.1 20.4 150 16-167 25-188 (253)
402 PF15390 DUF4613: Domain of un 97.2 0.016 3.6E-07 46.1 12.5 117 98-215 54-187 (671)
403 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.092 2E-06 42.6 18.0 154 26-179 120-338 (527)
404 PF12234 Rav1p_C: RAVE protein 97.1 0.039 8.5E-07 45.1 14.1 109 60-173 35-155 (631)
405 KOG1897 Damage-specific DNA bi 97.1 0.11 2.3E-06 44.2 16.6 113 102-217 776-901 (1096)
406 COG3204 Uncharacterized protei 97.0 0.043 9.4E-07 40.0 12.2 117 98-215 83-211 (316)
407 PHA03098 kelch-like protein; P 96.9 0.064 1.4E-06 43.7 14.2 148 25-178 342-515 (534)
408 KOG2377 Uncharacterized conser 96.9 0.07 1.5E-06 41.4 13.1 138 65-205 32-172 (657)
409 KOG4499 Ca2+-binding protein R 96.9 0.086 1.9E-06 37.3 14.4 137 15-154 109-263 (310)
410 COG5167 VID27 Protein involved 96.9 0.047 1E-06 43.0 11.9 145 25-174 478-632 (776)
411 TIGR02604 Piru_Ver_Nterm putat 96.7 0.18 3.8E-06 39.0 17.0 146 15-165 14-204 (367)
412 PF10168 Nup88: Nuclear pore c 96.7 0.13 2.9E-06 43.1 14.1 77 100-176 84-181 (717)
413 PF08728 CRT10: CRT10; InterP 96.7 0.3 6.6E-06 40.7 15.7 110 103-213 103-245 (717)
414 PF14727 PHTB1_N: PTHB1 N-term 96.6 0.22 4.9E-06 38.9 15.5 149 65-214 36-204 (418)
415 PHA02790 Kelch-like protein; P 96.6 0.18 3.8E-06 40.6 14.4 144 25-177 318-473 (480)
416 KOG3630 Nuclear pore complex, 96.6 0.029 6.3E-07 48.1 10.1 141 16-161 102-260 (1405)
417 PF10313 DUF2415: Uncharacteri 96.6 0.011 2.5E-07 29.5 4.9 31 145-175 1-34 (43)
418 COG4590 ABC-type uncharacteriz 96.6 0.045 9.7E-07 42.5 10.2 175 4-183 210-395 (733)
419 PF14655 RAB3GAP2_N: Rab3 GTPa 96.6 0.058 1.3E-06 42.0 10.9 83 98-184 305-408 (415)
420 PF15390 DUF4613: Domain of un 96.5 0.32 7E-06 39.2 16.4 153 15-174 20-186 (671)
421 KOG2247 WD40 repeat-containing 96.5 0.00067 1.4E-08 52.3 -0.1 138 60-205 40-178 (615)
422 PF07569 Hira: TUP1-like enhan 96.5 0.031 6.8E-07 39.6 8.2 67 150-216 16-97 (219)
423 PRK10115 protease 2; Provision 96.5 0.45 9.7E-06 40.2 21.9 113 15-129 127-254 (686)
424 PF14655 RAB3GAP2_N: Rab3 GTPa 96.5 0.048 1E-06 42.4 9.7 78 10-87 303-401 (415)
425 PF13449 Phytase-like: Esteras 96.5 0.26 5.7E-06 37.4 16.0 112 103-215 87-250 (326)
426 PF14870 PSII_BNR: Photosynthe 96.4 0.26 5.7E-06 36.8 21.3 145 60-211 150-301 (302)
427 TIGR03074 PQQ_membr_DH membran 96.4 0.52 1.1E-05 40.1 18.6 157 26-182 260-485 (764)
428 PF14761 HPS3_N: Hermansky-Pud 96.4 0.12 2.6E-06 36.1 10.2 103 113-216 29-165 (215)
429 PF10313 DUF2415: Uncharacteri 96.4 0.02 4.3E-07 28.6 4.7 30 102-131 2-34 (43)
430 COG5167 VID27 Protein involved 96.3 0.14 3.1E-06 40.4 11.3 142 65-215 478-633 (776)
431 KOG1897 Damage-specific DNA bi 96.2 0.68 1.5E-05 39.7 19.3 119 101-220 715-862 (1096)
432 COG5276 Uncharacterized conser 96.1 0.36 7.9E-06 35.5 21.4 153 17-177 89-244 (370)
433 PF14781 BBS2_N: Ciliary BBSom 96.0 0.2 4.4E-06 32.1 10.6 105 107-216 5-127 (136)
434 TIGR03118 PEPCTERM_chp_1 conse 96.0 0.42 9.1E-06 35.4 20.1 69 16-84 24-118 (336)
435 TIGR03074 PQQ_membr_DH membran 95.9 0.91 2E-05 38.7 22.0 188 26-218 194-481 (764)
436 TIGR03606 non_repeat_PQQ dehyd 95.9 0.68 1.5E-05 36.8 16.5 107 59-165 34-166 (454)
437 PF08728 CRT10: CRT10; InterP 95.8 0.36 7.8E-06 40.3 12.2 106 65-173 113-245 (717)
438 KOG4499 Ca2+-binding protein R 95.8 0.41 9E-06 34.0 16.4 95 103-197 160-264 (310)
439 KOG1916 Nuclear protein, conta 95.8 0.018 3.8E-07 48.2 4.9 163 9-179 127-328 (1283)
440 PF07569 Hira: TUP1-like enhan 95.8 0.12 2.7E-06 36.7 8.6 69 108-177 18-98 (219)
441 PF14761 HPS3_N: Hermansky-Pud 95.7 0.47 1E-05 33.3 14.2 139 67-213 29-213 (215)
442 COG5290 IkappaB kinase complex 95.6 0.64 1.4E-05 39.1 12.6 108 104-213 250-365 (1243)
443 PF07995 GSDH: Glucose / Sorbo 95.6 0.47 1E-05 36.2 11.5 19 146-164 115-133 (331)
444 PF07250 Glyoxal_oxid_N: Glyox 95.6 0.58 1.3E-05 33.8 13.3 145 38-184 48-207 (243)
445 PRK13684 Ycf48-like protein; P 95.6 0.76 1.6E-05 35.1 16.5 153 14-172 172-329 (334)
446 PF07250 Glyoxal_oxid_N: Glyox 95.4 0.69 1.5E-05 33.4 14.7 137 78-218 48-201 (243)
447 KOG2247 WD40 repeat-containing 95.4 0.0025 5.5E-08 49.3 -1.2 138 16-160 36-175 (615)
448 PF10168 Nup88: Nuclear pore c 95.4 1 2.2E-05 38.2 13.3 73 60-132 90-181 (717)
449 PF13449 Phytase-like: Esteras 95.3 0.91 2E-05 34.5 16.7 147 14-161 19-231 (326)
450 KOG1900 Nuclear pore complex, 95.3 1 2.2E-05 40.0 13.3 161 13-175 77-273 (1311)
451 PF05096 Glu_cyclase_2: Glutam 95.2 0.79 1.7E-05 33.4 15.3 127 32-162 106-249 (264)
452 PF14781 BBS2_N: Ciliary BBSom 95.1 0.53 1.1E-05 30.3 12.5 113 61-177 5-128 (136)
453 PLN00033 photosystem II stabil 95.0 1.3 2.8E-05 34.7 17.0 150 17-171 241-396 (398)
454 TIGR02276 beta_rpt_yvtn 40-res 95.0 0.15 3.2E-06 25.2 5.2 40 154-194 1-41 (42)
455 PF11715 Nup160: Nucleoporin N 95.0 0.17 3.7E-06 41.4 8.1 73 110-182 156-256 (547)
456 PLN00033 photosystem II stabil 94.9 1.4 3E-05 34.5 16.3 108 100-211 280-396 (398)
457 KOG4460 Nuclear pore complex, 94.9 0.74 1.6E-05 36.8 10.6 72 146-217 105-201 (741)
458 TIGR03548 mutarot_permut cycli 94.9 1.3 2.7E-05 33.7 16.5 98 65-165 123-233 (323)
459 KOG1916 Nuclear protein, conta 94.8 0.1 2.3E-06 44.0 6.3 139 75-216 152-325 (1283)
460 PF08801 Nucleoporin_N: Nup133 94.8 1.6 3.6E-05 34.5 15.5 30 146-175 191-220 (422)
461 KOG2280 Vacuolar assembly/sort 94.7 2.2 4.8E-05 35.8 15.9 173 37-215 65-247 (829)
462 PF07995 GSDH: Glucose / Sorbo 94.7 1.4 3.1E-05 33.6 15.1 103 16-120 3-133 (331)
463 PRK13684 Ycf48-like protein; P 94.6 1.6 3.4E-05 33.4 19.0 147 60-213 178-330 (334)
464 KOG3522 Predicted guanine nucl 94.2 0.46 9.9E-06 40.0 8.4 141 67-212 548-695 (925)
465 COG4590 ABC-type uncharacteriz 94.1 0.98 2.1E-05 35.5 9.6 154 60-217 226-389 (733)
466 PF11715 Nup160: Nucleoporin N 94.1 0.57 1.2E-05 38.4 9.1 76 64-139 156-257 (547)
467 PF02333 Phytase: Phytase; In 94.1 2.1 4.7E-05 33.1 20.7 188 24-216 66-292 (381)
468 KOG4460 Nuclear pore complex, 94.0 1.1 2.3E-05 36.0 9.7 81 101-181 104-205 (741)
469 PF05935 Arylsulfotrans: Aryls 93.9 2.8 6.1E-05 33.8 17.0 145 34-185 126-312 (477)
470 PF12768 Rax2: Cortical protei 93.6 2.2 4.8E-05 31.7 12.1 115 76-194 16-144 (281)
471 PF14727 PHTB1_N: PTHB1 N-term 93.6 2.9 6.3E-05 33.0 18.2 182 27-215 146-361 (418)
472 PF14269 Arylsulfotran_2: Aryl 93.4 2.5 5.5E-05 31.7 13.7 69 16-84 145-220 (299)
473 PLN02153 epithiospecifier prot 93.3 2.9 6.4E-05 32.0 19.3 154 25-179 32-230 (341)
474 TIGR02276 beta_rpt_yvtn 40-res 93.2 0.51 1.1E-05 23.2 5.8 33 24-56 1-34 (42)
475 PLN02193 nitrile-specifier pro 93.1 3.9 8.5E-05 33.0 15.0 150 26-178 229-414 (470)
476 KOG1520 Predicted alkaloid syn 92.8 3.5 7.6E-05 31.7 14.5 82 120-204 197-282 (376)
477 PF10395 Utp8: Utp8 family; I 92.7 5.3 0.00012 33.4 19.6 151 60-216 135-307 (670)
478 KOG3616 Selective LIM binding 92.6 5.9 0.00013 33.6 12.5 67 14-82 14-81 (1636)
479 KOG2377 Uncharacterized conser 92.4 4.6 9.9E-05 32.1 11.4 102 57-162 69-171 (657)
480 PLN02153 epithiospecifier prot 92.3 4.1 8.8E-05 31.2 18.2 152 26-178 86-288 (341)
481 KOG3616 Selective LIM binding 92.2 2.6 5.7E-05 35.6 9.9 62 60-128 20-81 (1636)
482 PF10395 Utp8: Utp8 family; I 92.2 6.2 0.00013 33.1 16.5 165 14-182 129-313 (670)
483 PF03022 MRJP: Major royal jel 92.2 3.8 8.2E-05 30.6 15.7 169 37-205 35-254 (287)
484 PF12657 TFIIIC_delta: Transcr 92.1 2.7 5.8E-05 28.7 9.6 31 101-131 86-122 (173)
485 KOG1900 Nuclear pore complex, 92.1 8.7 0.00019 34.6 13.5 138 73-215 96-273 (1311)
486 COG4257 Vgb Streptogramin lyas 91.7 4.1 8.9E-05 30.0 16.9 153 59-225 152-316 (353)
487 COG5276 Uncharacterized conser 91.6 4.4 9.6E-05 30.2 17.3 144 65-217 95-244 (370)
488 PF12768 Rax2: Cortical protei 91.3 4.8 0.0001 30.0 9.9 73 121-196 15-98 (281)
489 TIGR03606 non_repeat_PQQ dehyd 91.1 6.8 0.00015 31.4 14.7 103 101-205 30-164 (454)
490 KOG1898 Splicing factor 3b, su 91.0 10 0.00023 33.4 18.0 172 37-215 854-1049(1205)
491 PF10214 Rrn6: RNA polymerase 90.9 10 0.00022 32.9 19.3 202 12-215 35-277 (765)
492 PF03088 Str_synth: Strictosid 90.6 2.4 5.3E-05 25.3 6.9 43 162-205 33-75 (89)
493 COG1520 FOG: WD40-like repeat 90.5 6.9 0.00015 30.4 10.9 106 112-218 68-175 (370)
494 PLN02193 nitrile-specifier pro 90.2 8.7 0.00019 31.1 19.6 112 64-178 227-355 (470)
495 PRK14131 N-acetylneuraminic ac 90.1 7.7 0.00017 30.3 16.0 12 77-88 190-201 (376)
496 COG5290 IkappaB kinase complex 90.0 5.9 0.00013 33.8 9.9 91 60-155 252-347 (1243)
497 PRK10115 protease 2; Provision 89.9 12 0.00025 32.1 24.0 193 18-217 175-397 (686)
498 TIGR03118 PEPCTERM_chp_1 conse 89.7 7 0.00015 29.3 12.4 116 102-217 24-173 (336)
499 smart00564 PQQ beta-propeller 89.6 1.1 2.4E-05 20.5 3.7 24 158-181 8-31 (33)
500 PF07676 PD40: WD40-like Beta 89.5 1.2 2.6E-05 21.5 3.9 29 13-41 7-38 (39)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-42 Score=245.65 Aligned_cols=215 Identities=21% Similarity=0.364 Sum_probs=185.5
Q ss_pred hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEec
Q 026679 6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDS 83 (235)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~ 83 (235)
+-..+.||.++|.|++|+|+|..|++|+.|.++|+||+.+..+..+.++|..-+ ++|+|||+.|++|+.||+|++||.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 445688999999999999999999999999999999999999999999998654 999999999999999999999999
Q ss_pred cCCCCCCceeEeecCCCcceeEEEEcc-----CCCeEEEecCCCcEEEEEcCCCceeeee--------------------
Q 026679 84 RSYDKGPFDTFLVGGDTAEVCDIKFSN-----DGKSMLLTTTNNNIYVLDAYGGEKRCGF-------------------- 138 (235)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~~~~~~~-------------------- 138 (235)
.+++. .-..+.+|...|++++|.| ..++|++++.||.+++||+..++.+..+
T Consensus 187 ktg~~---~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliyS 263 (480)
T KOG0271|consen 187 KTGQQ---IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYS 263 (480)
T ss_pred CCCCc---ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEe
Confidence 88765 3456778999999999976 5678888889999999987543321110
Q ss_pred --------------------------------------------------------------------------------
Q 026679 139 -------------------------------------------------------------------------------- 138 (235)
Q Consensus 139 -------------------------------------------------------------------------------- 138 (235)
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence
Q ss_pred ------------------ccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCE
Q 026679 139 ------------------SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAM 200 (235)
Q Consensus 139 ------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 200 (235)
.+.+|..-|+.+.||||++++|+++-|..|++||.++|+.+.++.+|-..|+.++|+.|.++
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence 02234456778999999999999999999999999999999999999999999999999999
Q ss_pred EEEcc--cceEEeeCCCCCCCCCCC
Q 026679 201 FVAAS--SVLSFWIPNPSSNSTDES 223 (235)
Q Consensus 201 l~~~~--~~i~iw~~~~~~~~~~~~ 223 (235)
|++++ .++++|++.+.++..-..
T Consensus 424 lVS~SkDsTLKvw~V~tkKl~~DLp 448 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDVRTKKLKQDLP 448 (480)
T ss_pred EEEcCCCceEEEEEeeeeeecccCC
Confidence 99999 779999999887664433
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-43 Score=253.06 Aligned_cols=216 Identities=22% Similarity=0.328 Sum_probs=196.2
Q ss_pred hhhhhhhhcccccceeEEEeecC--CCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeE
Q 026679 3 DNRILRYFKGHKERVISLCMSPV--NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAI 78 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v 78 (235)
+...+..|+||...|.++.|+|. +..+|||+.||++++|++.+..++..+.+|...+ ++|+|+|++|++++.|.+-
T Consensus 206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tW 285 (459)
T KOG0272|consen 206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTW 285 (459)
T ss_pred CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccch
Confidence 45677889999999999999996 4689999999999999999989999999998666 9999999999999999999
Q ss_pred EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679 79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 158 (235)
Q Consensus 79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (235)
++||+++... .....+|...|.+++|+|||..+++|+.|..-++||++++.++..+. +|...|..++|+|+|..
T Consensus 286 RlWD~~tk~E----lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~--gH~k~I~~V~fsPNGy~ 359 (459)
T KOG0272|consen 286 RLWDLETKSE----LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA--GHIKEILSVAFSPNGYH 359 (459)
T ss_pred hhcccccchh----hHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec--ccccceeeEeECCCceE
Confidence 9999999775 66778999999999999999999999999999999999999876554 56677999999999999
Q ss_pred EEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeec-CCCEEEEcc--cceEEeeCCCCCCCCCCCC
Q 026679 159 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP-RRAMFVAAS--SVLSFWIPNPSSNSTDEST 224 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~~i~iw~~~~~~~~~~~~~ 224 (235)
||+|+.|++++|||++..+.+.++.+|..-|+.+.|+| .|.+|++++ ++++||...+........+
T Consensus 360 lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG 428 (459)
T KOG0272|consen 360 LATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG 428 (459)
T ss_pred EeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC
Confidence 99999999999999999999999999999999999999 789999998 8899999987665544443
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-42 Score=247.13 Aligned_cols=204 Identities=21% Similarity=0.375 Sum_probs=190.9
Q ss_pred hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEE
Q 026679 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKL 80 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i 80 (235)
+..++..|.+|...|..++|+|+|++|+|++.|.+-++||++++..+....+|...+ ++|+|||.++++|+.|..-+|
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 347889999999999999999999999999999999999999999888888888655 999999999999999999999
Q ss_pred EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEE
Q 026679 81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYV 159 (235)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l 159 (235)
||++++.. ...+.+|..+|.+++|+|+|..|++|+.|+++++||++..+.+. .+..|..-|+.+.|+| .|.+|
T Consensus 330 WDlRtgr~----im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly--~ipAH~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 330 WDLRTGRC----IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY--TIPAHSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred eecccCcE----EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccce--ecccccchhhheEecccCCeEE
Confidence 99999987 88888999999999999999999999999999999999988765 4556667799999999 78999
Q ss_pred EEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEee
Q 026679 160 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 212 (235)
Q Consensus 160 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~ 212 (235)
++++.|+++++|..+++.++.++.+|.+.|.++.++|++.++++++ .++++|.
T Consensus 404 ~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 404 VTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999998 8899995
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.7e-42 Score=260.69 Aligned_cols=205 Identities=22% Similarity=0.388 Sum_probs=190.9
Q ss_pred hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEec
Q 026679 6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDS 83 (235)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~ 83 (235)
..+++-||+++|..+.|+|+.++|+++|.|+++|+|.+.+..+...+++|..++ +.|+|.|-+||+++.|++-++|..
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 345588999999999999999999999999999999999999999999999887 899999999999999999999998
Q ss_pred cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC
Q 026679 84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 163 (235)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 163 (235)
..... ...+.+|-+.|.|+.|+|+..++++|+.|.++++||+.+|..++.|.. |.++|.+++|||+|++|++|+
T Consensus 523 d~~~P----lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G--H~~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 523 DHNKP----LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG--HKGPVTALAFSPCGRYLASGD 596 (707)
T ss_pred ccCCc----hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC--CCCceEEEEEcCCCceEeecc
Confidence 87554 455668999999999999999999999999999999999999988865 667899999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679 164 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 164 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~ 216 (235)
.||.|.+||+.+++.+..+.+|.+.|.++.|+.+|..|++++ +++++||+...
T Consensus 597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999999999999999999999998 67999998643
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-40 Score=225.98 Aligned_cols=211 Identities=20% Similarity=0.310 Sum_probs=185.6
Q ss_pred hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEE
Q 026679 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKL 80 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i 80 (235)
.|..++.|+||+..|..+..+++|++.++++.|+++++||+.+++..+.+.+|...+ ++|+++.+.+++|+.|.++++
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTikl 131 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKL 131 (315)
T ss_pred cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeee
Confidence 477899999999999999999999999999999999999999999999999998655 999999999999999999999
Q ss_pred EeccCCCCCCceeEeecCCCcceeEEEEccC--CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679 81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 158 (235)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (235)
|++..... .......+...|.|+.|+|+ ..+++.++.|++|++||+++.+....+.. |.+.++.+++||||.+
T Consensus 132 wnt~g~ck---~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g--h~~~v~t~~vSpDGsl 206 (315)
T KOG0279|consen 132 WNTLGVCK---YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG--HSGYVNTVTVSPDGSL 206 (315)
T ss_pred eeecccEE---EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc--ccccEEEEEECCCCCE
Confidence 99876442 12222223788999999997 67899999999999999999887776554 5566999999999999
Q ss_pred EEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCCCCC
Q 026679 159 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNS 219 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~~~ 219 (235)
+++|+.||.+.+||++.++.+..+. |...|.+++|+|+...|+.+. ..|+|||++++...
T Consensus 207 casGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 207 CASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVV 267 (315)
T ss_pred EecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchhhh
Confidence 9999999999999999999988776 778999999999998888887 66999999876543
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.4e-38 Score=216.45 Aligned_cols=203 Identities=19% Similarity=0.327 Sum_probs=189.9
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcC-CCCEEEEEecCCeEEEE
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLF 81 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~ 81 (235)
+..+.+.+|++.+.|+.|-+ ...|+|+|.|.+..+||+++++....+.+|...+ ++++| +++.+++|+.|+..++|
T Consensus 136 ~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklW 214 (343)
T KOG0286|consen 136 RVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLW 214 (343)
T ss_pred eeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeee
Confidence 34567899999999999987 4679999999999999999999999999998766 77889 99999999999999999
Q ss_pred eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679 82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 161 (235)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 161 (235)
|++.+.. ...+.+|...|+++.|.|+|.-+++|++|++.++||+|..+.+..+.......+|++++||..|++|++
T Consensus 215 D~R~~~c----~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfa 290 (343)
T KOG0286|consen 215 DVRSGQC----VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFA 290 (343)
T ss_pred eccCcce----eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEe
Confidence 9998765 778889999999999999999999999999999999999999999987777788999999999999999
Q ss_pred eCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEee
Q 026679 162 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 212 (235)
Q Consensus 162 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~ 212 (235)
|..|..+.+||.-.++.+..+.+|+.+|.++..+|||..+++|+ ..++||.
T Consensus 291 gy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 291 GYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999999999999999999999 7899994
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.5e-38 Score=214.28 Aligned_cols=208 Identities=17% Similarity=0.264 Sum_probs=188.3
Q ss_pred hhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEecc
Q 026679 7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSR 84 (235)
Q Consensus 7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~ 84 (235)
-+.|+||.++|.++.|++|.++++++|.||.+.|||.-+...++.++.+..-+ ++|+|.|+.+++|+-|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 36789999999999999999999999999999999999988888888887655 8999999999999999999999998
Q ss_pred CCCCC--CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEEEE
Q 026679 85 SYDKG--PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVS 161 (235)
Q Consensus 85 ~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 161 (235)
+.+.. ......+.+|.+.+.++.|-+|+ +|++++.|.+..+||+++++.+..+. +|.+.|.++.++| +++.+++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~--GH~gDV~slsl~p~~~ntFvS 204 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFH--GHTGDVMSLSLSPSDGNTFVS 204 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEec--CCcccEEEEecCCCCCCeEEe
Confidence 76322 23345688999999999999865 69999999999999999999888765 5667799999999 9999999
Q ss_pred eCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679 162 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 162 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~ 217 (235)
|+-|+..++||++.+..++.|.+|.+.|.++.|.|+|.-+++|+ ++.++||++...
T Consensus 205 g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ 262 (343)
T ss_pred cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCc
Confidence 99999999999999999999999999999999999999999998 889999998754
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-39 Score=227.99 Aligned_cols=209 Identities=24% Similarity=0.386 Sum_probs=173.8
Q ss_pred chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceee-eeeeccCCce--EEEcC-----CCCEEEEEe
Q 026679 2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ-GILRLRGRPT--VAFDQ-----QGLVFAVAM 73 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~~--~~~~~-----~~~~l~~~~ 73 (235)
++..+..++++|..-|.|++|+|||+.||+|+.||+|++||.++++++ ..+.+|...+ ++|.| ..++|++++
T Consensus 145 ~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s 224 (480)
T KOG0271|consen 145 DTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS 224 (480)
T ss_pred CCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceeccc
Confidence 455677889999999999999999999999999999999999887654 4566666443 66654 456777777
Q ss_pred cCCeEEEEeccCC-------------------------------------------------------------------
Q 026679 74 EAGAIKLFDSRSY------------------------------------------------------------------- 86 (235)
Q Consensus 74 ~dg~v~i~d~~~~------------------------------------------------------------------- 86 (235)
.||.++|||+..+
T Consensus 225 kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRt 304 (480)
T KOG0271|consen 225 KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRT 304 (480)
T ss_pred CCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhc
Confidence 7777777776530
Q ss_pred -------CC------------------------------------------CCceeEeecCCCcceeEEEEccCCCeEEE
Q 026679 87 -------DK------------------------------------------GPFDTFLVGGDTAEVCDIKFSNDGKSMLL 117 (235)
Q Consensus 87 -------~~------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 117 (235)
.. .......+.+|..-|+.+.|+||++++++
T Consensus 305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS 384 (480)
T KOG0271|consen 305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS 384 (480)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEE
Confidence 00 00011134467888999999999999999
Q ss_pred ecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecC
Q 026679 118 TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR 197 (235)
Q Consensus 118 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 197 (235)
++.|..|++||.++|+.+..+.. |-.+|..++|+.|.++|++|+.|.++++||+++.+....+.+|...|.++.|+||
T Consensus 385 aSFDkSVkLW~g~tGk~lasfRG--Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspD 462 (480)
T KOG0271|consen 385 ASFDKSVKLWDGRTGKFLASFRG--HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPD 462 (480)
T ss_pred eecccceeeeeCCCcchhhhhhh--ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCC
Confidence 99999999999999999887765 4467999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcc--cceEEee
Q 026679 198 RAMFVAAS--SVLSFWI 212 (235)
Q Consensus 198 ~~~l~~~~--~~i~iw~ 212 (235)
|..+++|+ ..+++|.
T Consensus 463 G~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 463 GQRVASGGKDKVLRLWR 479 (480)
T ss_pred CceeecCCCceEEEeec
Confidence 99999998 5588884
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-37 Score=212.13 Aligned_cols=217 Identities=21% Similarity=0.308 Sum_probs=188.1
Q ss_pred hhhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCc-----ceeeeeeeccCCce--EEEcCCCCEEEEEecC
Q 026679 4 NRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRV-----NACQGILRLRGRPT--VAFDQQGLVFAVAMEA 75 (235)
Q Consensus 4 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~-----~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d 75 (235)
-.+...+++|++.|+.++..+.+ +.+++++.|.++.+|++.. |..++.+.+|...+ ++.+++|+++++++.|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 34556789999999999999874 6899999999999998753 56788888888666 9999999999999999
Q ss_pred CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC
Q 026679 76 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 155 (235)
Q Consensus 76 g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 155 (235)
+.+++||+.+++. ...+.+|...|.+++|+||.+.+++|+.|.+|.+|+....... ......+...|.++.|+|+
T Consensus 85 ~~lrlWDl~~g~~----t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~-t~~~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 85 GTLRLWDLATGES----TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY-TIHEDSHREWVSCVRFSPN 159 (315)
T ss_pred ceEEEEEecCCcE----EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEE-EEecCCCcCcEEEEEEcCC
Confidence 9999999999765 7778899999999999999999999999999999998655443 3333444789999999997
Q ss_pred --CcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC-CCCCCCC
Q 026679 156 --GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN-STDESTD 225 (235)
Q Consensus 156 --~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~-~~~~~~~ 225 (235)
..+|++++.|+++++||+++.+....+.+|.+.++.+.++|||..+++|+ |.+.+||++.++. ..+....
T Consensus 160 ~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~ 234 (315)
T KOG0279|consen 160 ESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFD 234 (315)
T ss_pred CCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCC
Confidence 78999999999999999999999999999999999999999999999998 7899999976543 3444333
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.9e-37 Score=207.65 Aligned_cols=217 Identities=19% Similarity=0.281 Sum_probs=184.7
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEEEec
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDS 83 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i~d~ 83 (235)
.++..|.+|++.|+++.|..+|+++++||.||+++|||++...+.+.++... ++.+..+|+...|++|..+|.|++||+
T Consensus 74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDL 153 (311)
T ss_pred CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEc
Confidence 3678899999999999999999999999999999999999988777776553 455999999999999999999999999
Q ss_pred cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce----eeeeccCCCCCcceeeEEeCCCcEE
Q 026679 84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK----RCGFSLEPSPNTNTEATFTPDGQYV 159 (235)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l 159 (235)
.+.... ..........|.++...|||.+++++...|+.++|++-..+. ....++..|.+.+..+.+||++++|
T Consensus 154 ~~~~c~---~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 154 GENSCT---HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred cCCccc---cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence 886441 222334457899999999999999999999999999976543 2233456677889999999999999
Q ss_pred EEeCCCCcEEEEEcCCC-ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCCCCCCC
Q 026679 160 VSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDEST 224 (235)
Q Consensus 160 ~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~~~~~ 224 (235)
++++.|.+++||+..+. +....+++|...++..+||.||+||++++ +..++|++..++....-..
T Consensus 231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred EeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence 99999999999999887 66677889999999999999999999998 6799999987765443333
No 11
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-36 Score=207.53 Aligned_cols=216 Identities=54% Similarity=0.949 Sum_probs=197.7
Q ss_pred CchhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEE
Q 026679 1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKL 80 (235)
Q Consensus 1 l~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i 80 (235)
|.+++.++.|.||...|++++.+|-+..+++++.|++|++||++..++...+.....++++|+|+|-++|++.....|++
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKL 166 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred EeccCCCCCCceeEeec-CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCc-ceeeEEeCCCcE
Q 026679 81 FDSRSYDKGPFDTFLVG-GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT-NTEATFTPDGQY 158 (235)
Q Consensus 81 ~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~ 158 (235)
||++..+.+|...+.+. ......+.+.|+|||++++.++..+.+++.|.-+|.....+........ -....|+||+++
T Consensus 167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF 246 (311)
T ss_pred EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE
Confidence 99999988888888776 5567889999999999999999999999999999998888877665442 246789999999
Q ss_pred EEEeCCCCcEEEEEcCCCceeeeecC-CCcceeEEEeecCCCEEEEcccceEEeeCCCC
Q 026679 159 VVSGSGDGTLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIPNPS 216 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~ 216 (235)
+++|+.||+|.+|+++++..+..+.+ +.+++.++.|+|.-..+++++..+.+|-++..
T Consensus 247 vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 247 VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDED 305 (311)
T ss_pred EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecccc
Confidence 99999999999999999999999988 68899999999999999999999999987644
No 12
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=214.50 Aligned_cols=208 Identities=21% Similarity=0.278 Sum_probs=191.4
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD 82 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d 82 (235)
++.+.+++|.+-|.|+++.|.+++|++|+.|++++|||+.+++...++.+|-..+ +++++...++++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 5677899999999999999999999999999999999999999999999887666 99999999999999999999999
Q ss_pred ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679 83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 162 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (235)
++..+. .....+|-+.|.+++.+|.-+.|++++.|..+++||+++...+..+. +|..+|..+.+.|-...+++|
T Consensus 222 Le~nkv----IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~--GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 222 LEYNKV----IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS--GHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred chhhhh----HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec--CCCCcceeEEeecCCCceEEe
Confidence 998775 66778999999999999999999999999999999999998776554 566779999999988899999
Q ss_pred CCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCCCC
Q 026679 163 SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSN 218 (235)
Q Consensus 163 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~~ 218 (235)
+.|++|++||++.++...++..|...+.+++.+|....+++++ .+++-|++..+..
T Consensus 296 S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f 352 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEF 352 (460)
T ss_pred cCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccch
Confidence 9999999999999999999999999999999999999999999 7899999965543
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-36 Score=212.83 Aligned_cols=214 Identities=17% Similarity=0.253 Sum_probs=192.6
Q ss_pred chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCc-ceeeeeeeccCCce--EEEcCCCCEEEEEecCCeE
Q 026679 2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV-NACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAI 78 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v 78 (235)
++|++.+.++||.+.|.+++|+..|+++++++.|-.+++||.++ .++++...+|...+ +.|-|.|.++++++.|.+|
T Consensus 138 ~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~ti 217 (406)
T KOG0295|consen 138 ETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTI 217 (406)
T ss_pred cchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccce
Confidence 57899999999999999999999999999999999999999987 56777777776544 9999999999999999999
Q ss_pred EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC---
Q 026679 79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD--- 155 (235)
Q Consensus 79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~--- 155 (235)
+.|++.++.. ...+.+|...|..++.+.||..+++++.|.++++|-+.++++...+..+.|+ +.+++|.|.
T Consensus 218 k~We~~tg~c----v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~--vEci~wap~~~~ 291 (406)
T KOG0295|consen 218 KAWECDTGYC----VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHP--VECIAWAPESSY 291 (406)
T ss_pred eEEeccccee----EEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccc--eEEEEecccccC
Confidence 9999999876 7888899999999999999999999999999999999999887776666554 888998764
Q ss_pred ------------CcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCCCC
Q 026679 156 ------------GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTD 221 (235)
Q Consensus 156 ------------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~~ 221 (235)
++++.+++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++. +++++||++..+....
T Consensus 292 ~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 292 PSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred cchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 35899999999999999999999999999999999999999999999997 8899999987655443
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.1e-37 Score=218.44 Aligned_cols=206 Identities=19% Similarity=0.354 Sum_probs=177.8
Q ss_pred hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeecc---CCceEEEcCCCCEEEEEecCCeEEEEecc
Q 026679 8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR---GRPTVAFDQQGLVFAVAMEAGAIKLFDSR 84 (235)
Q Consensus 8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 84 (235)
..+++|..+|.++.|++++.++++|+.+|.|++|+..-. .++.+..+ .+..++|+|++..|++++.||+|+|||..
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence 456899999999999999999999999999999997544 33333333 35569999999999999999999999998
Q ss_pred CCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679 85 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 164 (235)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (235)
..+. ...+.+|.-.|.+++|+|....+++++.|..|++||.++++++.. ++.|+..|..+.|+|++++|++++.
T Consensus 211 ~~ke----e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~t--lh~HKntVl~~~f~~n~N~Llt~sk 284 (464)
T KOG0284|consen 211 MPKE----ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT--LHGHKNTVLAVKFNPNGNWLLTGSK 284 (464)
T ss_pred CCch----hheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhh--hhhccceEEEEEEcCCCCeeEEccC
Confidence 8765 455689999999999999999999999999999999999998864 5667777999999999999999999
Q ss_pred CCcEEEEEcCCCceeeeecCCCcceeEEEeecCC-CEEEEcc--cceEEeeCCCCCCCC
Q 026679 165 DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSSNST 220 (235)
Q Consensus 165 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~~i~iw~~~~~~~~~ 220 (235)
|..+++||+++.+.+..+++|...++++.|+|-. .++.+++ +.+..|.+.......
T Consensus 285 D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~ 343 (464)
T KOG0284|consen 285 DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG 343 (464)
T ss_pred CceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccccc
Confidence 9999999999999999999999999999999954 4555555 779999987444333
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.4e-35 Score=211.24 Aligned_cols=211 Identities=15% Similarity=0.284 Sum_probs=187.0
Q ss_pred hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEE
Q 026679 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKL 80 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i 80 (235)
+|.++.+|..|.++|.++.|+..|.+|++++.|+++.+||..++...+.+..+..+. +.|-. ...|++++.|+.|++
T Consensus 265 ~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V 343 (524)
T KOG0273|consen 265 DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHV 343 (524)
T ss_pred CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCCCceEEE
Confidence 578899999999999999999999999999999999999999999999999998875 55543 456999999999999
Q ss_pred EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC----
Q 026679 81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG---- 156 (235)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~---- 156 (235)
+.+....+ ...+.+|..+|.++.|+|.+.+|++++.|+++++|..........+ +.|...|..+.|+|.|
T Consensus 344 ~kv~~~~P----~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l--~~Hskei~t~~wsp~g~v~~ 417 (524)
T KOG0273|consen 344 CKVGEDRP----VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDL--QAHSKEIYTIKWSPTGPVTS 417 (524)
T ss_pred EEecCCCc----ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhh--hhhccceeeEeecCCCCccC
Confidence 99987654 5667789999999999999999999999999999998777666544 4555668899999875
Q ss_pred -----cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCCC
Q 026679 157 -----QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNST 220 (235)
Q Consensus 157 -----~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~ 220 (235)
..+++++.|+++++||+..+.+++.+..|..+|++++|+|+|+++++|+ +.+.+|+.++.++..
T Consensus 418 n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 418 NPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred CCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence 4789999999999999999999999999999999999999999999998 889999998776543
No 16
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.9e-34 Score=223.03 Aligned_cols=208 Identities=24% Similarity=0.426 Sum_probs=182.7
Q ss_pred hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEec-CcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679 6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDL-RVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD 82 (235)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~-~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d 82 (235)
+.+.+.+|...|.+++|+|+++++++++.|++|+|||+ ..+..++++++|...+ ++|+|+++++++|+.|++|++||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence 67778899999999999999999999999999999999 5558899999998655 99999999999999999999999
Q ss_pred ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce--eeeeccCCCCCcceeeEEeCCCcEEE
Q 026679 83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK--RCGFSLEPSPNTNTEATFTPDGQYVV 160 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (235)
+++++. ...+.+|...|++++|++++++|++++.|+.|++||+.++.. ...+.......+++.+.|+|++.+++
T Consensus 275 ~~~~~~----~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll 350 (456)
T KOG0266|consen 275 VRTGEC----VRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLL 350 (456)
T ss_pred ccCCeE----EEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEE
Confidence 999665 778889999999999999999999999999999999999983 34444333322689999999999999
Q ss_pred EeCCCCcEEEEEcCCCceeeeecCCCcc---eeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679 161 SGSGDGTLHAWNINTRNEVACWNGNIGV---VACLKWAPRRAMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 161 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~ 217 (235)
+++.|+.+++||++.+..+..+.+|... +.+...++.+.++++++ +.+++|++.+..
T Consensus 351 ~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 351 SASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred EecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence 9999999999999999999999988764 34445577899999998 779999998643
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.8e-35 Score=225.31 Aligned_cols=202 Identities=20% Similarity=0.347 Sum_probs=179.0
Q ss_pred ccceeEEEeecCCCeeEEEeccceEEEEecCcce-------------------------------eeeeeeccCCce--E
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-------------------------------CQGILRLRGRPT--V 60 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-------------------------------~~~~~~~~~~~~--~ 60 (235)
...++|..|++++.+||.|-.|..|++|.+...+ ....+.+|..++ .
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 4678999999999999999999999999986311 122345666666 8
Q ss_pred EEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc
Q 026679 61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL 140 (235)
Q Consensus 61 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 140 (235)
.|+|+.++|++++.|+++++|.+.+... .....+|..+|..+.|+|.|-++++++.|++.++|......+.+.+..
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~----~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSC----LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eecccccceeeccCCcceeeeeccccee----EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcc
Confidence 9999999999999999999999998775 677789999999999999999999999999999999988888777665
Q ss_pred CCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679 141 EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 141 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~ 218 (235)
+ ...+.|+.|+|+..|+++|+.|.++++||+.+|..+..+.+|.++|.+++|+|+|++|++|+ +.|++||+.++.+
T Consensus 534 h--lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~ 611 (707)
T KOG0263|consen 534 H--LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSL 611 (707)
T ss_pred c--ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcc
Confidence 4 45699999999999999999999999999999999999999999999999999999999998 8899999988655
Q ss_pred CCC
Q 026679 219 STD 221 (235)
Q Consensus 219 ~~~ 221 (235)
...
T Consensus 612 v~~ 614 (707)
T KOG0263|consen 612 VKQ 614 (707)
T ss_pred hhh
Confidence 433
No 18
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.7e-36 Score=217.42 Aligned_cols=206 Identities=22% Similarity=0.411 Sum_probs=179.3
Q ss_pred hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc-eEEEcCCC-CEEEEEecCCeEEE
Q 026679 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQG-LVFAVAMEAGAIKL 80 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~-~~l~~~~~dg~v~i 80 (235)
+++++++|.||..+|.+++|+++|..|+++|.|+.+++||+++|++...+.....+ ++.|+|++ +.+++|+.|+.|+.
T Consensus 247 ~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~ 326 (503)
T KOG0282|consen 247 DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQ 326 (503)
T ss_pred CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEE
Confidence 47899999999999999999999999999999999999999999999999877654 59999988 89999999999999
Q ss_pred EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee-----------------------
Q 026679 81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG----------------------- 137 (235)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----------------------- 137 (235)
||+++++. ......|-+.|..+.|-++|+.+++.++|+.+++|+.+.+-.++.
T Consensus 327 wDiRs~kv----vqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a 402 (503)
T KOG0282|consen 327 WDIRSGKV----VQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA 402 (503)
T ss_pred EeccchHH----HHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehh
Confidence 99999875 555667888999999999999999999999999999765432111
Q ss_pred -----------------------eccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEe
Q 026679 138 -----------------------FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW 194 (235)
Q Consensus 138 -----------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 194 (235)
+..+.-.+....+.|||||.+|++|+.||.+.+||.++-+.+..++.|.+++..+.|
T Consensus 403 Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~w 482 (503)
T KOG0282|consen 403 QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDW 482 (503)
T ss_pred hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEe
Confidence 111122245567899999999999999999999999999999999999999999999
Q ss_pred ecCC-CEEEEcc--cceEEee
Q 026679 195 APRR-AMFVAAS--SVLSFWI 212 (235)
Q Consensus 195 ~~~~-~~l~~~~--~~i~iw~ 212 (235)
+|.. ..+|+++ |.|++|+
T Consensus 483 HP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 483 HPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCcceeEecccCceeEecC
Confidence 9965 5677777 9999996
No 19
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=191.98 Aligned_cols=208 Identities=19% Similarity=0.286 Sum_probs=174.4
Q ss_pred hhhhhhhcccccceeEEEeecC-CCeeEEEeccceEEEEecCcc---eeeeeee-ccC--CceEEEcCCCCEEEEEecCC
Q 026679 4 NRILRYFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVN---ACQGILR-LRG--RPTVAFDQQGLVFAVAMEAG 76 (235)
Q Consensus 4 ~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~---~~~~~~~-~~~--~~~~~~~~~~~~l~~~~~dg 76 (235)
...++.+++|.+.+..++|+|. |..||+|+.|+.|++|+...+ .+...+. +|. ++.++|+|.|++|++++.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 3456788999999999999997 789999999999999998742 3444442 233 44599999999999999999
Q ss_pred eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-eeeeeccCCCCCcceeeEEeCC
Q 026679 77 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPD 155 (235)
Q Consensus 77 ~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~ 155 (235)
++.||.-...+. .....+.+|...|.+++|+++|++||+++.|+.|.+|.+..+. .-..-.+..|...|..+.|+|.
T Consensus 84 t~~Iw~k~~~ef--ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 84 TVVIWKKEDGEF--ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred eEEEeecCCCce--eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 999998775443 2366788999999999999999999999999999999987443 2222344556667999999999
Q ss_pred CcEEEEeCCCCcEEEEEcC---CCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679 156 GQYVVSGSGDGTLHAWNIN---TRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 213 (235)
Q Consensus 156 ~~~l~~~~~dg~i~v~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~ 213 (235)
..+|++++.|.+|++|+-. +..++.++.+|...|.+++|+|.|..|++++ ++++||..
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence 9999999999999999876 3567899999999999999999999999998 88999984
No 20
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-34 Score=202.22 Aligned_cols=204 Identities=18% Similarity=0.310 Sum_probs=185.2
Q ss_pred hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEE
Q 026679 4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLF 81 (235)
Q Consensus 4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~ 81 (235)
.++++.+.+|+..|.+++|-|.|.++++++.|.+|+.|++.++.++.++.+|..-+ ++.+.||.++++++.|.++++|
T Consensus 183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence 46778889999999999999999999999999999999999999999999998654 8889999999999999999999
Q ss_pred eccCCCCCCceeEeecCCCcceeEEEEccC----------C-----CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCc
Q 026679 82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSND----------G-----KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT 146 (235)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~-----~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 146 (235)
-+.+.+. ...+..|..+|.+++|.|. + .++.+++.|++|++||+.++.++..+ .+|...
T Consensus 263 ~~~t~~~----k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL--~ghdnw 336 (406)
T KOG0295|consen 263 VVATKQC----KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL--VGHDNW 336 (406)
T ss_pred Eeccchh----hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE--ecccce
Confidence 9998765 4556688899999999773 2 47889999999999999999877654 566688
Q ss_pred ceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679 147 NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 213 (235)
Q Consensus 147 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~ 213 (235)
|..++|+|.|+||+++.+|+++++||+++++++..+..|..-++++.|+.+..++++|+ ..+++|.-
T Consensus 337 Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 337 VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999 77999963
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=218.09 Aligned_cols=202 Identities=22% Similarity=0.360 Sum_probs=175.5
Q ss_pred cccceeEEEeecCCCeeEEEeccceEEEEecCcce--eeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCC
Q 026679 13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA--CQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDK 88 (235)
Q Consensus 13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 88 (235)
|...|.++.|+++|+.+++++.|+.+++|+....+ ....+..|...+ ++|+|+++++++++.|+++++||+....
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~- 236 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG- 236 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC-
Confidence 37899999999999999999999999999997776 566665565444 9999999999999999999999994321
Q ss_pred CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcE
Q 026679 89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL 168 (235)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (235)
.....+.+|...|++++|+|+++.+++|+.|++|++||++++++...+..+ ...|++++|++++++|++++.|+.|
T Consensus 237 --~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h--s~~is~~~f~~d~~~l~s~s~d~~i 312 (456)
T KOG0266|consen 237 --RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH--SDGISGLAFSPDGNLLVSASYDGTI 312 (456)
T ss_pred --eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc--CCceEEEEECCCCCEEEEcCCCccE
Confidence 236677899999999999999999999999999999999999888776654 4669999999999999999999999
Q ss_pred EEEEcCCCc--eeeeecCCCcc--eeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679 169 HAWNINTRN--EVACWNGNIGV--VACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 219 (235)
Q Consensus 169 ~v~d~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~ 219 (235)
++||+.++. ++..+..+... ++++.|+|++.+++++. +.+++|++......
T Consensus 313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred EEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence 999999999 56677666555 99999999999999998 68999999865433
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=190.36 Aligned_cols=208 Identities=17% Similarity=0.241 Sum_probs=180.2
Q ss_pred chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcce--eeeeeeccCCce--EEEcCCCCEEEEEecCCe
Q 026679 2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA--CQGILRLRGRPT--VAFDQQGLVFAVAMEAGA 77 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~ 77 (235)
.+|++.++++...+.|+.+...|+++.||+++. ..||+||++++. ++.++.++..++ +.|..+|+.+++|++||+
T Consensus 28 ~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt 106 (311)
T KOG0315|consen 28 LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT 106 (311)
T ss_pred hcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce
Confidence 578889999988899999999999999999886 579999998875 577788886555 889999999999999999
Q ss_pred EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679 78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 157 (235)
Q Consensus 78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (235)
++|||++.... .....+.++|+++..+|+...|+++..+|.|++||+........+... ....+.++...|||.
T Consensus 107 ~kIWdlR~~~~-----qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe-~~~~i~sl~v~~dgs 180 (311)
T KOG0315|consen 107 VKIWDLRSLSC-----QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE-DDTSIQSLTVMPDGS 180 (311)
T ss_pred EEEEeccCccc-----chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC-CCcceeeEEEcCCCc
Confidence 99999998553 223356699999999999999999999999999999988776655443 347799999999999
Q ss_pred EEEEeCCCCcEEEEEcCCC------ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679 158 YVVSGSGDGTLHAWNINTR------NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 158 ~l~~~~~dg~i~v~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~ 216 (235)
+|+.+...|..++|++-+. +++..++.|.+.+..+.+|||+++|++++ .+++||+.+..
T Consensus 181 ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 181 MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 9999999999999998653 35667889999999999999999999998 77999999875
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.2e-35 Score=207.69 Aligned_cols=202 Identities=22% Similarity=0.395 Sum_probs=178.5
Q ss_pred hhhhhcccc-cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecCCeEEEEe
Q 026679 6 ILRYFKGHK-ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFD 82 (235)
Q Consensus 6 ~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v~i~d 82 (235)
.++.+++|. ..|++++|+|+...|+++|.||+|+|||....+....+.+|+ ..+++|+|...++++++.|..|++||
T Consensus 171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 355566655 999999999999999999999999999999988888888887 55699999999999999999999999
Q ss_pred ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEEEE
Q 026679 83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVS 161 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 161 (235)
.+++.+ ...+..|...|..+.|+|++++|++++.|..+++||+++.+.+..+. +|+..++++.|+| ...+|.+
T Consensus 251 prSg~c----l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r--~Hkkdv~~~~WhP~~~~lfts 324 (464)
T KOG0284|consen 251 PRSGSC----LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR--GHKKDVTSLTWHPLNESLFTS 324 (464)
T ss_pred CCCcch----hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh--cchhhheeeccccccccceee
Confidence 999887 77788899999999999999999999999999999999777666555 4556699999999 5678899
Q ss_pred eCCCCcEEEEEcCCCceeeee-cCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679 162 GSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 213 (235)
Q Consensus 162 ~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~ 213 (235)
|+.||.|..|.+...+++..+ .+|...|++++|+|-|.+|++|+ .++++|.-
T Consensus 325 gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 325 GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 999999999999856665555 57999999999999999999998 77999965
No 24
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=2.7e-32 Score=210.70 Aligned_cols=205 Identities=10% Similarity=0.181 Sum_probs=163.7
Q ss_pred hhcccccceeEEEeec-CCCeeEEEeccceEEEEecCcc-------eeeeeeeccCCce--EEEcCCC-CEEEEEecCCe
Q 026679 9 YFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVN-------ACQGILRLRGRPT--VAFDQQG-LVFAVAMEAGA 77 (235)
Q Consensus 9 ~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~~--~~~~~~~-~~l~~~~~dg~ 77 (235)
.+.+|.+.|++++|+| ++++|++|+.|++|++||+.++ ..+..+..|...+ ++|+|++ .+|++++.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 7889999999999999999764 2455667776544 9999975 69999999999
Q ss_pred EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679 78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 157 (235)
Q Consensus 78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (235)
|++||+++++. ...+..|...|.+++|+|++..|++++.|+.|++||+++++.+..+..+.. .....+.|.+++.
T Consensus 150 VrIWDl~tg~~----~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~-~~~~~~~w~~~~~ 224 (493)
T PTZ00421 150 VNVWDVERGKA----VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS-AKSQRCLWAKRKD 224 (493)
T ss_pred EEEEECCCCeE----EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCC-CcceEEEEcCCCC
Confidence 99999987653 556678889999999999999999999999999999999988776654433 2245678899877
Q ss_pred EEEEeC----CCCcEEEEEcCCCce-eeeecCC-CcceeEEEeecCCCEEEEcc---cceEEeeCCCCCC
Q 026679 158 YVVSGS----GDGTLHAWNINTRNE-VACWNGN-IGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSN 218 (235)
Q Consensus 158 ~l~~~~----~dg~i~v~d~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~ 218 (235)
.+++++ .|+.|++||+++... +.....+ ...+....|++++.+|++++ +.|++|++.....
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 777653 478999999987543 3333323 34566677899999888765 6799999986653
No 25
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.1e-33 Score=192.77 Aligned_cols=205 Identities=16% Similarity=0.251 Sum_probs=178.9
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecC-cceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEE
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR-VNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLF 81 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~ 81 (235)
.++..+.+|.+.|..+.|+|+|.+||+|+.|..|.+|++. .-+....+++|...+ +.|.++++.+++++.|.+++.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 4566788999999999999999999999999999999953 334555667787766 7889999999999999999999
Q ss_pred eccCCCCCCceeEeecCCCcceeEEEEccCC-CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679 82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 160 (235)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (235)
|.++++. ..+...|..-|+.+.-+.-| ..+.+++.|+++++||+|+...++.+.. +..++++.|..++..+.
T Consensus 118 D~~tG~~----~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~---kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 118 DAETGKR----IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN---KYQLTAVGFKDTSDQVI 190 (338)
T ss_pred eccccee----eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc---ceeEEEEEeccccccee
Confidence 9999887 77888899999988844444 4566788899999999999888866543 35589999999999999
Q ss_pred EeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679 161 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 161 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~ 216 (235)
+|+-|+.|++||++.......+.+|..+|+.+..+|+|.++.+-+ .++++||+...
T Consensus 191 sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEeccc
Confidence 999999999999999999999999999999999999999999998 88999998753
No 26
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-33 Score=186.69 Aligned_cols=206 Identities=15% Similarity=0.188 Sum_probs=182.5
Q ss_pred hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEec
Q 026679 6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDS 83 (235)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~ 83 (235)
..+.+..|.++|..+.|+-+|++.++++.|++|++|+...+.+++++.+|+..+ ++.+.|+..|++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 456678999999999999999999999999999999999999999999999877 667789999999999999999999
Q ss_pred cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC
Q 026679 84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 163 (235)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 163 (235)
.+++. ...+.+|...|+.++|+.+...+++|+.|..+++||.++........+......|.++.. .+..|++|+
T Consensus 89 ~TGkv----~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS 162 (307)
T KOG0316|consen 89 NTGKV----DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGS 162 (307)
T ss_pred ccCee----eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeec
Confidence 99886 778899999999999999999999999999999999998765554455555566877766 567899999
Q ss_pred CCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679 164 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 219 (235)
Q Consensus 164 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~ 219 (235)
.||+++.||++.|+....+.+| +|+++.|+++++.+++++ +++++.|-+++++.
T Consensus 163 ~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred cCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence 9999999999999987777655 899999999999999988 88999998877654
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.8e-34 Score=202.13 Aligned_cols=206 Identities=19% Similarity=0.293 Sum_probs=178.8
Q ss_pred hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEe
Q 026679 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFD 82 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d 82 (235)
+..+++.+.||++.|.|+.|. .+.+++||.|.+|+|||.++++++.++-.|...++-+--+..++++++.|.++.+||
T Consensus 226 ~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWd 303 (499)
T KOG0281|consen 226 SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWD 303 (499)
T ss_pred cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEe
Confidence 456788999999999999997 469999999999999999999999999999888866656678999999999999999
Q ss_pred ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679 83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 162 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (235)
+..... ......+.+|...|+.+.|+ .+++++++.|.+|++|++.+++.+..+. +|...|.|+.+ .++++++|
T Consensus 304 m~sps~-it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~--gHkRGIAClQY--r~rlvVSG 376 (499)
T KOG0281|consen 304 MASPTD-ITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN--GHKRGIACLQY--RDRLVVSG 376 (499)
T ss_pred ccCchH-HHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh--cccccceehhc--cCeEEEec
Confidence 987652 22345567899999999996 4599999999999999999999887654 55556877766 78999999
Q ss_pred CCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679 163 SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 219 (235)
Q Consensus 163 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~ 219 (235)
+.|.+|++||+..|.++..+++|+.-|.++.| |.+.+++|+ |.|+|||+......
T Consensus 377 SSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 377 SSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred CCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCC
Confidence 99999999999999999999999999999999 567888887 99999999876544
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.3e-31 Score=196.30 Aligned_cols=205 Identities=26% Similarity=0.445 Sum_probs=178.9
Q ss_pred hhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc--eEEEcCCCCEEEEEecCCeEEEEecc
Q 026679 7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSR 84 (235)
Q Consensus 7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~v~i~d~~ 84 (235)
++.+++|.++|++++|+|++++|++++.||.+++|++.+++....+..+... .+.|+|+++.+++++.+|.+++||+.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 5678899999999999999999999999999999999988777777766544 48999999999999999999999998
Q ss_pred CCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679 85 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 164 (235)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (235)
..+. ...+..|...+.++.|+|+++.+++++.++.+.+||+++++....+. .+...+.++.|+|++.++++++.
T Consensus 82 ~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~ 155 (289)
T cd00200 82 TGEC----VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR--GHTDWVNSVAFSPDGTFVASSSQ 155 (289)
T ss_pred cccc----eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec--cCCCcEEEEEEcCcCCEEEEEcC
Confidence 7543 44555777899999999998888888889999999999887776655 45567999999999999999988
Q ss_pred CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679 165 DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 165 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~ 217 (235)
++.|++||+++++.+..+..|...+.++.|+|++..+++++ +.+++|++....
T Consensus 156 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence 99999999999998888988988999999999998887776 789999997643
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.5e-32 Score=191.45 Aligned_cols=208 Identities=14% Similarity=0.231 Sum_probs=179.5
Q ss_pred chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeee--ccCCceEEEcCCCCEEEEEecCCeEE
Q 026679 2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR--LRGRPTVAFDQQGLVFAVAMEAGAIK 79 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~v~ 79 (235)
.+|.....+.+|...|+++.|+.+|.+||||+.+|.|+||+..++.....+. .....-+.|+|.+..|++|+.||.+.
T Consensus 94 ~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvW 173 (399)
T KOG0296|consen 94 STGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVW 173 (399)
T ss_pred cCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEE
Confidence 4677788899999999999999999999999999999999999998887775 33344499999999999999999999
Q ss_pred EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec--------------------
Q 026679 80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-------------------- 139 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-------------------- 139 (235)
.|.+.+... ...+.+|..++++=.|.|+|+.++++..||+|++|++.++++.....
T Consensus 174 mw~ip~~~~----~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~ 249 (399)
T KOG0296|consen 174 MWQIPSQAL----CKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLT 249 (399)
T ss_pred EEECCCcce----eeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeE
Confidence 999988533 56677899999999999999999999999999999998887654432
Q ss_pred -------------------------------------------------------------------------cCCCCCc
Q 026679 140 -------------------------------------------------------------------------LEPSPNT 146 (235)
Q Consensus 140 -------------------------------------------------------------------------~~~~~~~ 146 (235)
.-.|...
T Consensus 250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~ 329 (399)
T KOG0296|consen 250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG 329 (399)
T ss_pred eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc
Confidence 0012345
Q ss_pred ceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679 147 NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 214 (235)
Q Consensus 147 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~ 214 (235)
|..+.|-+ ..+|++++.+|.|+.||.++|+++.++.+|...|.+++.+|+.+++++++ ++.+|++..
T Consensus 330 V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 330 VTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 66677766 57899999999999999999999999999999999999999999999998 678888753
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.8e-32 Score=207.13 Aligned_cols=207 Identities=19% Similarity=0.333 Sum_probs=176.0
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD 82 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d 82 (235)
..+-..++|...+++++++|||+++|||+.||.|+|||...+-+..++..|...+ +.|+..++.+++.+-||+|+.||
T Consensus 341 sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 341 SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 3455668999999999999999999999999999999999999999999887655 89999999999999999999999
Q ss_pred ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCC-cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679 83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 161 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 161 (235)
+..... ........+.+..|++..|.|..+++|+.|. .|.+|++.+|+.+-.+. +|.++|.+++|+|.+..|++
T Consensus 421 lkRYrN---fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs--GHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 421 LKRYRN---FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS--GHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred ecccce---eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc--CCCCcceeeEEccccCeEEe
Confidence 987654 1222233445677899999999888888876 59999999999987655 56688999999999999999
Q ss_pred eCCCCcEEEEEcCCC-ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679 162 GSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 162 ~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~ 217 (235)
++.|.+|++||+-.. ..+.++. +...+..++|+|+|+-|+++. |.|.+||.+...
T Consensus 496 ~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 496 GSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred ccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 999999999998654 3344454 667899999999999999987 899999997543
No 31
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=197.22 Aligned_cols=208 Identities=20% Similarity=0.335 Sum_probs=165.3
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcce---eeeeeeccCCce--EEEcCCCCEEEEEecCCeEE
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA---CQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK 79 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~ 79 (235)
+..+.+..|++.|+-+.||++|++||+++.|.+..+|++.... ..+++.+|..++ +.|+||.+++++|+.+..+.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 3456788999999999999999999999999999999886543 466777777666 99999999999999999999
Q ss_pred EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce----------------------eee
Q 026679 80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK----------------------RCG 137 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----------------------~~~ 137 (235)
+||+.+++... ....++...+.+++|.|||..+++|+.|+.+..||+..... +..
T Consensus 295 lwDv~tgd~~~---~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~ 371 (519)
T KOG0293|consen 295 LWDVDTGDLRH---LYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLL 371 (519)
T ss_pred eccCCcchhhh---hcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEE
Confidence 99999987511 11123457899999999999999999999999999743210 000
Q ss_pred ---------ec--------cCCCCCcceeeEEeCCC--------------------------------------------
Q 026679 138 ---------FS--------LEPSPNTNTEATFTPDG-------------------------------------------- 156 (235)
Q Consensus 138 ---------~~--------~~~~~~~i~~~~~~~~~-------------------------------------------- 156 (235)
+. ......+|++++.|.++
T Consensus 372 v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~ 451 (519)
T KOG0293|consen 372 VTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGN 451 (519)
T ss_pred EecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCC
Confidence 00 00111345555555554
Q ss_pred -cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCC-CEEEEcc--cceEEeeCCC
Q 026679 157 -QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 157 -~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~~i~iw~~~~ 215 (235)
.++++|++|+.|+||+..+++++.++.+|...|.+++|+|.. .++|+++ |+|+||.+..
T Consensus 452 ~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 452 DKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 378999999999999999999999999999999999999955 5677777 8899998753
No 32
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.9e-33 Score=204.71 Aligned_cols=210 Identities=18% Similarity=0.327 Sum_probs=177.4
Q ss_pred hhhhhhcccccceeEEEeec-CCCeeEEEeccceEEEEecCc-ceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEE
Q 026679 5 RILRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRV-NACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKL 80 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i 80 (235)
+.+..+.||+..|+++.|.| .+.+|++++.|+.|+||++.. +.+++++.+|..++ ++|+++|..|++++.|+.+++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 56778999999999999999 788999999999999999976 88999999998776 999999999999999999999
Q ss_pred EeccCCCCCCceeEeecCCCcceeEEEEccCC-CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEE
Q 026679 81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV 159 (235)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 159 (235)
||+++++. ...+ .....++++.|+|++ +.+++|+.|+.|+.||+++++.++.+. .|-+.|..+.|-++|+.+
T Consensus 285 wDtETG~~----~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd--~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 285 WDTETGQV----LSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD--RHLGAILDITFVDEGRRF 357 (503)
T ss_pred eccccceE----EEEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH--hhhhheeeeEEccCCceE
Confidence 99999875 2222 234678999999988 889999999999999999999887665 455779999999999999
Q ss_pred EEeCCCCcEEEEEcCCCcee----------------------------------------------eeecCCC--cceeE
Q 026679 160 VSGSGDGTLHAWNINTRNEV----------------------------------------------ACWNGNI--GVVAC 191 (235)
Q Consensus 160 ~~~~~dg~i~v~d~~~~~~~----------------------------------------------~~~~~~~--~~v~~ 191 (235)
++.++|+.++||+.+.+-.+ ..+++|. +.-..
T Consensus 358 issSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 358 ISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred eeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence 99999999999998754211 1123442 34567
Q ss_pred EEeecCCCEEEEcc--cceEEeeCCCCCCCCC
Q 026679 192 LKWAPRRAMFVAAS--SVLSFWIPNPSSNSTD 221 (235)
Q Consensus 192 ~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~~ 221 (235)
+.|||||.+|++|+ |.+.+||.++.++...
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~ 469 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSK 469 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechhhhhhhc
Confidence 89999999999998 8899999987655433
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.9e-32 Score=193.28 Aligned_cols=213 Identities=15% Similarity=0.250 Sum_probs=191.0
Q ss_pred CchhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc--eEEEcCCCCEEEEEecCCeE
Q 026679 1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAI 78 (235)
Q Consensus 1 l~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~v 78 (235)
|++|++..++.||-..|..+++|+-..++++++.|+.|+.||++.++.++.+.+|-.. +++.+|.-..|++|+.|..+
T Consensus 180 latg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~ 259 (460)
T KOG0285|consen 180 LATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTI 259 (460)
T ss_pred cccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceE
Confidence 5688999999999999999999999999999999999999999999999999887644 48899999999999999999
Q ss_pred EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679 79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 158 (235)
Q Consensus 79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (235)
++||+++... ...+.+|..+|..+.+.|-...+++++.|++|++||++.++....+.. |...+++++.+|....
T Consensus 260 RvWDiRtr~~----V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~--hkksvral~lhP~e~~ 333 (460)
T KOG0285|consen 260 RVWDIRTRAS----VHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTH--HKKSVRALCLHPKENL 333 (460)
T ss_pred EEeeecccce----EEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeec--ccceeeEEecCCchhh
Confidence 9999998775 788899999999999999777899999999999999999988766554 4566999999999999
Q ss_pred EEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCCCCCC
Q 026679 159 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNST 220 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~~~~ 220 (235)
+|+++.| .|+-|++..+..+..+.+|...|.+++.+.|+-++..+. |.+..||.+.+...+
T Consensus 334 fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 334 FASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQ 395 (460)
T ss_pred hhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccc
Confidence 9999988 489999999999999999999999999999887766666 889999998765443
No 34
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-31 Score=204.02 Aligned_cols=206 Identities=16% Similarity=0.321 Sum_probs=182.3
Q ss_pred hhhhhcccccceeEEEeecCCCeeEEEecc-ceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecCCeEEEEe
Q 026679 6 ILRYFKGHKERVISLCMSPVNDSFMSGSLD-HSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFD 82 (235)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v~i~d 82 (235)
+++.+.--..+|..++|+..|.+||.|+.. |.+-||+......+-..++|. ..+++++|||.++++|+.||.|++||
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn 378 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN 378 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEe
Confidence 445555556789999999999999988764 789999999888877777665 44599999999999999999999999
Q ss_pred ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679 83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 162 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (235)
...+-+ ...+..|.+.|+.+.|+..|+.+++.+-||+|+.||+...+..+.+..+. +....+++..|.|..+++|
T Consensus 379 ~~SgfC----~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~-p~QfscvavD~sGelV~AG 453 (893)
T KOG0291|consen 379 TQSGFC----FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE-PIQFSCVAVDPSGELVCAG 453 (893)
T ss_pred ccCceE----EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC-ceeeeEEEEcCCCCEEEee
Confidence 988765 78888999999999999999999999999999999999999888887654 3556789999999999999
Q ss_pred CCCC-cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679 163 SGDG-TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 163 ~~dg-~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~ 216 (235)
+.|. .|.+|++++|+.+..+.+|++||.+++|+|++..|++++ .+|++|++-..
T Consensus 454 ~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred ccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 9886 499999999999999999999999999999999999999 88999998443
No 35
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.1e-32 Score=201.98 Aligned_cols=213 Identities=15% Similarity=0.222 Sum_probs=189.5
Q ss_pred chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC--ceEEEcCCCCEEEEEecCCeEE
Q 026679 2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIK 79 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~v~ 79 (235)
++..+++.++--.-||.+..|-+..+++++|+.|..|+||+..+++.++.+..|.. .+++.+|...++++++.|-.|+
T Consensus 43 etqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iK 122 (794)
T KOG0276|consen 43 ETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIK 122 (794)
T ss_pred ccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEE
Confidence 34567778888888999999999999999999999999999999999999999985 5599999999999999999999
Q ss_pred EEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC--CC
Q 026679 80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP--DG 156 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~--~~ 156 (235)
+||.+.. ......+.+|...|.+++|+| |.+.+++++-|++|++|.+.+..+..+ +.+|...|+++.+-+ |.
T Consensus 123 lW~we~~---wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT--l~gHekGVN~Vdyy~~gdk 197 (794)
T KOG0276|consen 123 LWDWENE---WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT--LEGHEKGVNCVDYYTGGDK 197 (794)
T ss_pred EeeccCc---eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee--eeccccCcceEEeccCCCc
Confidence 9998763 234677889999999999999 678899999999999999977766554 456667799999987 44
Q ss_pred cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679 157 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 219 (235)
Q Consensus 157 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~ 219 (235)
.+|++|+.|..|+|||.++..++.++.+|...|..+.|+|.-..+++|+ |+++||+-.+-++.
T Consensus 198 pylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 198 PYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred ceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehh
Confidence 7999999999999999999999999999999999999999999999999 89999998765443
No 36
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.5e-30 Score=202.36 Aligned_cols=205 Identities=14% Similarity=0.270 Sum_probs=154.6
Q ss_pred hhhhhcccccceeEEEeecC-CCeeEEEeccceEEEEecCcce--------eeeeeeccCCc--eEEEcCCCCE-EEEEe
Q 026679 6 ILRYFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVNA--------CQGILRLRGRP--TVAFDQQGLV-FAVAM 73 (235)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~--------~~~~~~~~~~~--~~~~~~~~~~-l~~~~ 73 (235)
.+..+.+|.+.|.+++|+|+ +.+|++|+.|++|++||+.++. ....+..|... .++|+|++.. +++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 45668899999999999996 7899999999999999997642 23345556544 4999998875 57889
Q ss_pred cCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcce-----
Q 026679 74 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT----- 148 (235)
Q Consensus 74 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~----- 148 (235)
.|+.|++||+++++. ...+. +...|.+++|+|+|.+|++++.|+.|++||+++++.+..+..|. +.+.
T Consensus 146 ~DgtIrIWDl~tg~~----~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~--g~~~s~~v~ 218 (568)
T PTZ00420 146 FDSFVNIWDIENEKR----AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD--GGKNTKNIW 218 (568)
T ss_pred CCCeEEEEECCCCcE----EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc--CCceeEEEE
Confidence 999999999988653 23332 45789999999999999999999999999999998887665543 3232
Q ss_pred eeEEeCCCcEEEEeCCCC----cEEEEEcCC-CceeeeecC--CCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679 149 EATFTPDGQYVVSGSGDG----TLHAWNINT-RNEVACWNG--NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 149 ~~~~~~~~~~l~~~~~dg----~i~v~d~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~ 217 (235)
...|++++.+|++++.|+ .|++||+++ .+++..+.. +.+.+......+++.++++|+ ++|++|++..+.
T Consensus 219 ~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 219 IDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred eeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 223568889999877664 799999985 555555432 223333333345688888885 779999997654
No 37
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.2e-31 Score=193.37 Aligned_cols=217 Identities=18% Similarity=0.344 Sum_probs=173.6
Q ss_pred hhhhhhhhc---ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec-------------------------
Q 026679 3 DNRILRYFK---GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL------------------------- 54 (235)
Q Consensus 3 ~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~------------------------- 54 (235)
+|+.+..|. +|.+.|.+++|+||++.++|++.|.+++|||+.+.++++++..
T Consensus 221 tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G 300 (603)
T KOG0318|consen 221 TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSG 300 (603)
T ss_pred CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCc
Confidence 566777777 8999999999999999999999999999999887655544422
Q ss_pred ------------------cC--CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCce----------------------
Q 026679 55 ------------------RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD---------------------- 92 (235)
Q Consensus 55 ------------------~~--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~---------------------- 92 (235)
|. +.++..+|++++|++|+.||.|.-|+...+...++.
T Consensus 301 ~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~ 380 (603)
T KOG0318|consen 301 TINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTI 380 (603)
T ss_pred EEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEE
Confidence 22 234888999999999999999999998753321110
Q ss_pred -------eE-------------e---------------------------ec--------CCCcceeEEEEccCCCeEEE
Q 026679 93 -------TF-------------L---------------------------VG--------GDTAEVCDIKFSNDGKSMLL 117 (235)
Q Consensus 93 -------~~-------------~---------------------------~~--------~~~~~v~~~~~~~~~~~l~~ 117 (235)
.. . +. .-.....+++++|++..++.
T Consensus 381 g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaV 460 (603)
T KOG0318|consen 381 GWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAV 460 (603)
T ss_pred ecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEE
Confidence 00 0 00 00123457889999999999
Q ss_pred ecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCcee-eeecCCCcceeEEEeec
Q 026679 118 TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV-ACWNGNIGVVACLKWAP 196 (235)
Q Consensus 118 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~~ 196 (235)
|+.|+.|++|.+.............|.++|++++||||+.+|++|...+.+.+||+.+.+.. ..+.-|...|.+++|+|
T Consensus 461 GG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP 540 (603)
T KOG0318|consen 461 GGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSP 540 (603)
T ss_pred ecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCC
Confidence 99999999999988776666566778899999999999999999999999999999887663 33445999999999999
Q ss_pred CCCEEEEcc--cceEEeeCCCCCCC
Q 026679 197 RRAMFVAAS--SVLSFWIPNPSSNS 219 (235)
Q Consensus 197 ~~~~l~~~~--~~i~iw~~~~~~~~ 219 (235)
+..++++|+ .++.||+++.....
T Consensus 541 ~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 541 NNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred CceEEEeccccceEEEEEccChhhh
Confidence 999999999 67999999755433
No 38
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-31 Score=178.79 Aligned_cols=213 Identities=15% Similarity=0.286 Sum_probs=178.0
Q ss_pred hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC-ceEEEcCCCCEEEEEec-----CC
Q 026679 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAVAME-----AG 76 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~-----dg 76 (235)
+|+.+.+++||++.|+|+..+.+.+++++|+.|.++++||+++|+++..++.... ..+.|+++|++++.+.. .+
T Consensus 41 nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~ 120 (327)
T KOG0643|consen 41 NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTC 120 (327)
T ss_pred CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcce
Confidence 6788899999999999999999999999999999999999999999999987763 44999999998888764 47
Q ss_pred eEEEEeccCCCC---CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEe
Q 026679 77 AIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 153 (235)
Q Consensus 77 ~v~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ 153 (235)
.|.++|++.... ..........+.+.++.+-|.|-++.|++|..||.|..||+++++.... ....|...|+.++++
T Consensus 121 ~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~-s~~~h~~~Ind~q~s 199 (327)
T KOG0643|consen 121 FVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVD-SDEEHSSKINDLQFS 199 (327)
T ss_pred EEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeee-chhhhcccccccccc
Confidence 899999985431 1112455666778999999999999999999999999999999865432 223455679999999
Q ss_pred CCCcEEEEeCCCCcEEEEEcCCCce-------------------------------------------------------
Q 026679 154 PDGQYVVSGSGDGTLHAWNINTRNE------------------------------------------------------- 178 (235)
Q Consensus 154 ~~~~~l~~~~~dg~i~v~d~~~~~~------------------------------------------------------- 178 (235)
|+..++++++.|.+-++||.++.+.
T Consensus 200 ~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEE 279 (327)
T KOG0643|consen 200 RDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEE 279 (327)
T ss_pred CCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHH
Confidence 9999999999999999999876432
Q ss_pred eeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679 179 VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 179 ~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~ 216 (235)
+..+++|-++|.+++|+|+|+..++|+ |.+++..++..
T Consensus 280 igrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 280 IGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred hccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 223467889999999999999999998 77999877643
No 39
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.4e-32 Score=206.65 Aligned_cols=205 Identities=20% Similarity=0.279 Sum_probs=178.5
Q ss_pred hhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCccee---eeee--------eccCCceEEEcCCCCEEEEE
Q 026679 5 RILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNAC---QGIL--------RLRGRPTVAFDQQGLVFAVA 72 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~---~~~~--------~~~~~~~~~~~~~~~~l~~~ 72 (235)
-+++...+|++.|.+++++..+ .+|+++|.|+++++|++...+. ...+ ....+++++++|+.+++++|
T Consensus 402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~ 481 (775)
T KOG0319|consen 402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATG 481 (775)
T ss_pred hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEec
Confidence 3566778999999999998765 6899999999999999976211 1111 22346779999999999999
Q ss_pred ecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEE
Q 026679 73 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 152 (235)
Q Consensus 73 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~ 152 (235)
+.|.+.++|+++.... ...+.+|...|.++.|+|..+.+++++.|++|++|.+.+..+++.+.. |...|..+.|
T Consensus 482 SqDktaKiW~le~~~l----~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG--H~~aVlra~F 555 (775)
T KOG0319|consen 482 SQDKTAKIWDLEQLRL----LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG--HTSAVLRASF 555 (775)
T ss_pred ccccceeeecccCceE----EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC--ccceeEeeee
Confidence 9999999999995443 678889999999999999999999999999999999999999987764 5577999999
Q ss_pred eCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679 153 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 153 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~ 215 (235)
-.+|+.|++++.||.|++|++++++++.++..|...|++++.+|...++++|+ +.+.+|.=.+
T Consensus 556 ~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 556 IRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred eeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99999999999999999999999999999999999999999999999999887 6688886444
No 40
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-32 Score=182.20 Aligned_cols=204 Identities=21% Similarity=0.316 Sum_probs=175.2
Q ss_pred hhhhhhcccccceeEEEeecC-CCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcC-CCCEEEEEecCCeEEE
Q 026679 5 RILRYFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKL 80 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i 80 (235)
.+++.++.|...|.++.|++. +..++++|.|++|++|+...++.+.++.+|...+ .+|+| .++++++++.|+.+++
T Consensus 95 ~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~l 174 (311)
T KOG0277|consen 95 KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRL 174 (311)
T ss_pred cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEE
Confidence 578899999999999999985 4678888999999999999999999999988666 88999 6789999999999999
Q ss_pred EeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC-CcE
Q 026679 81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD-GQY 158 (235)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ 158 (235)
||++...+ ......|...+.++.|+. +.+.+++++.|+.|+.||++.-+. ..+.+.+|.-.|+.+.|||. ...
T Consensus 175 wdvr~~gk----~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 175 WDVRSPGK----FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-PLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred EEecCCCc----eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc-cceeecCCceEEEEEecCcchhhH
Confidence 99987654 444778889999999998 667889999999999999998653 34566778888999999995 568
Q ss_pred EEEeCCCCcEEEEEcCC-CceeeeecCCCcceeEEEeec-CCCEEEEcc--cceEEeeC
Q 026679 159 VVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAP-RRAMFVAAS--SVLSFWIP 213 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~~i~iw~~ 213 (235)
|++++.|-++++||... ...+.+...|..-+..+.|++ +..++++++ +.++||+.
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 89999999999999874 445666778899999999998 567888887 88999985
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.4e-30 Score=188.90 Aligned_cols=204 Identities=29% Similarity=0.513 Sum_probs=176.2
Q ss_pred hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC--ceEEEcCCCCEEEEEecCCeEEE
Q 026679 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKL 80 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~v~i 80 (235)
+++.+..+..|...|.++.|+++++++++++.|+.+++||+.+++....+..+.. ..++++|++.++++++.++.+++
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 3456677888999999999999988888888899999999998888888876653 44999999998888888999999
Q ss_pred EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679 81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 160 (235)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (235)
||++..+. ......|...+.++.|+|+++.+++++.++.|++||++.++....+. .+...+.++.|+|++.+++
T Consensus 162 ~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~ 235 (289)
T cd00200 162 WDLRTGKC----VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR--GHENGVNSVAFSPDGYLLA 235 (289)
T ss_pred EEcccccc----ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh--hcCCceEEEEEcCCCcEEE
Confidence 99986554 33444677799999999999999999999999999999887776554 3445799999999999999
Q ss_pred EeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEee
Q 026679 161 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 212 (235)
Q Consensus 161 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~ 212 (235)
+++.+|.|++||+.+++....+..|...|.+++|+|++.++++++ +.+++|+
T Consensus 236 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 236 SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 998899999999999999888988999999999999999999987 7799996
No 42
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.6e-30 Score=175.43 Aligned_cols=202 Identities=22% Similarity=0.328 Sum_probs=165.3
Q ss_pred ccccceeEEEeecCCCeeEEEeccceEEEEecCcc--eeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCC
Q 026679 12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN--ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYD 87 (235)
Q Consensus 12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 87 (235)
+|+..|.+++|+|.|++|+++|.|.++.||.-..+ +++..+.+|...+ ++|+++|++||+++.|+.|-+|.+....
T Consensus 59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd 138 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD 138 (312)
T ss_pred cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence 69999999999999999999999999999986543 6888899988654 9999999999999999999999998544
Q ss_pred CCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcC-CCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC
Q 026679 88 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY-GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 166 (235)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (235)
. -.....+.+|...|..+.|+|....|++++.|.+|++|+-. ...-.....+..|...+.+++|+|.|..|++++.|+
T Consensus 139 E-fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~ 217 (312)
T KOG0645|consen 139 E-FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG 217 (312)
T ss_pred c-EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc
Confidence 2 22345678899999999999999999999999999999877 444444456667777899999999999999999999
Q ss_pred cEEEEEcCCC-------ce------------------ee------------------eecCCCcceeEEEeecC-CCEEE
Q 026679 167 TLHAWNINTR-------NE------------------VA------------------CWNGNIGVVACLKWAPR-RAMFV 202 (235)
Q Consensus 167 ~i~v~d~~~~-------~~------------------~~------------------~~~~~~~~v~~~~~~~~-~~~l~ 202 (235)
+++||...+. +. +. .-..|...|++++|.|. ...|+
T Consensus 218 tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~ 297 (312)
T KOG0645|consen 218 TVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLA 297 (312)
T ss_pred ceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCcee
Confidence 9999984321 00 00 01246678999999994 56777
Q ss_pred Ecc--cceEEeeCC
Q 026679 203 AAS--SVLSFWIPN 214 (235)
Q Consensus 203 ~~~--~~i~iw~~~ 214 (235)
+++ |.+++|.+.
T Consensus 298 s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 298 SGGDDGIVNFWELE 311 (312)
T ss_pred ecCCCceEEEEEec
Confidence 776 889999864
No 43
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=4e-30 Score=212.03 Aligned_cols=206 Identities=17% Similarity=0.282 Sum_probs=168.4
Q ss_pred chhhhhhhhcccccceeEEEeec-CCCeeEEEeccceEEEEecCcceeeeeeeccCC-ceEEEc-CCCCEEEEEecCCeE
Q 026679 2 YDNRILRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFD-QQGLVFAVAMEAGAI 78 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~dg~v 78 (235)
.+++.+..+++|.+.|++++|+| ++.+|++|+.|++|++||++++..+..+..+.. .++.|+ +++..|++|+.||.|
T Consensus 563 ~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I 642 (793)
T PLN00181 563 ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKV 642 (793)
T ss_pred CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeE
Confidence 45667788899999999999997 678999999999999999999888877765532 347774 579999999999999
Q ss_pred EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC------ceeeeeccCCCCCcceeeEE
Q 026679 79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG------EKRCGFSLEPSPNTNTEATF 152 (235)
Q Consensus 79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------~~~~~~~~~~~~~~i~~~~~ 152 (235)
++||+++... ......+|...|.++.|. ++.+|++++.|+.|++||++.+ +.+.. +..|...+..++|
T Consensus 643 ~iwD~~~~~~---~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~--~~gh~~~i~~v~~ 716 (793)
T PLN00181 643 YYYDLRNPKL---PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS--FMGHTNVKNFVGL 716 (793)
T ss_pred EEEECCCCCc---cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEE--EcCCCCCeeEEEE
Confidence 9999987542 234556889999999997 6788999999999999999753 33333 3455667889999
Q ss_pred eCCCcEEEEeCCCCcEEEEEcCCCceeeee-------------cCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679 153 TPDGQYVVSGSGDGTLHAWNINTRNEVACW-------------NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 213 (235)
Q Consensus 153 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~ 213 (235)
+|++++|++|+.|+.|++|+......+..+ ..+...|.+++|+|++..|++++ |.|+||++
T Consensus 717 s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 717 SVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999998655433221 23456799999999999999998 88999986
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=7.3e-31 Score=204.09 Aligned_cols=210 Identities=19% Similarity=0.314 Sum_probs=185.9
Q ss_pred hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEE
Q 026679 4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLF 81 (235)
Q Consensus 4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~ 81 (235)
+.++..|..|.++|..++|+|.+.++++|+.|..|+||+.++.+++.++.+|-..+ +.|++.-.++++++.|.+|+||
T Consensus 41 ~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIW 120 (1202)
T KOG0292|consen 41 GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIW 120 (1202)
T ss_pred hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEE
Confidence 56788999999999999999999999999999999999999999999999987544 9999999999999999999999
Q ss_pred eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC---------------------------ce
Q 026679 82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG---------------------------EK 134 (235)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---------------------------~~ 134 (235)
+..+.+. ...+.+|...|.|.+|+|....+++++-|.+|++||+..- ..
T Consensus 121 Nwqsr~~----iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~Da 196 (1202)
T KOG0292|consen 121 NWQSRKC----IAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDA 196 (1202)
T ss_pred eccCCce----EEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCe
Confidence 9998876 7788899999999999999999999999999999998531 11
Q ss_pred eeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCc--eeeeecCCCcceeEEEeecCCCEEEEcc--cceEE
Q 026679 135 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN--EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSF 210 (235)
Q Consensus 135 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~i 210 (235)
+..+.+.+|...|+-++|+|.-.++++|+.|..|++|.+..-+ .+.+..+|-+.|.++-|+|...++++.+ +.++|
T Consensus 197 VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirV 276 (1202)
T KOG0292|consen 197 VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV 276 (1202)
T ss_pred eeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEE
Confidence 2234456777889999999999999999999999999986543 2566789999999999999999999998 78999
Q ss_pred eeCCCCC
Q 026679 211 WIPNPSS 217 (235)
Q Consensus 211 w~~~~~~ 217 (235)
||++..+
T Consensus 277 wDm~kRt 283 (1202)
T KOG0292|consen 277 WDMTKRT 283 (1202)
T ss_pred Eeccccc
Confidence 9997543
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.3e-30 Score=195.82 Aligned_cols=212 Identities=16% Similarity=0.246 Sum_probs=188.4
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD 82 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d 82 (235)
+..+.+..|+..|.++.|+|...+++++-..|.|.|||.++...++.+.....++ ..|-+.-+.+++|+.|..|++|+
T Consensus 4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEe
Confidence 4567788899999999999999999999999999999999999999999887766 88889999999999999999999
Q ss_pred ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC-ceeeeeccCCCCCcceeeEEeC-CCcEEE
Q 026679 83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTP-DGQYVV 160 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 160 (235)
..+.+. ...+..|...+++++.+|.-.+++++++|-.|++||.... .+.+.+ .+|...|.+++|.| |.+.++
T Consensus 84 ynt~ek----V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf--eGH~HyVMqv~fnPkD~ntFa 157 (794)
T KOG0276|consen 84 YNTGEK----VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF--EGHEHYVMQVAFNPKDPNTFA 157 (794)
T ss_pred ccccee----eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE--cCcceEEEEEEecCCCcccee
Confidence 999887 7788899999999999999999999999999999998654 334444 45556699999999 788999
Q ss_pred EeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeec--CCCEEEEcc--cceEEeeCCCCCCCCCC
Q 026679 161 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP--RRAMFVAAS--SVLSFWIPNPSSNSTDE 222 (235)
Q Consensus 161 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~--~~i~iw~~~~~~~~~~~ 222 (235)
+++.|++|+||.+.+..+..++++|...|.++.+.+ |..+|++|+ ..++|||+.+....+..
T Consensus 158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL 223 (794)
T KOG0276|consen 158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL 223 (794)
T ss_pred eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh
Confidence 999999999999999999999999999999999988 457999998 66999999886544433
No 46
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.98 E-value=4.3e-32 Score=183.12 Aligned_cols=215 Identities=18% Similarity=0.376 Sum_probs=184.8
Q ss_pred chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEE
Q 026679 2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKL 80 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i 80 (235)
++|.-+.+|.||.+.|++...+.+....|+++.|=+-++||.-+|..+..+.... +..++|+.|.+.|++|+.+..+++
T Consensus 47 ~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrv 126 (334)
T KOG0278|consen 47 DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRV 126 (334)
T ss_pred CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhh
Confidence 4567788999999999999999888889999999999999999999888887554 445999999999999999999999
Q ss_pred EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCC-----------------
Q 026679 81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS----------------- 143 (235)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----------------- 143 (235)
||++..+.+ .....+|.+.|..+.|....+.+++++.|++|++||.+++..++.+..+.+
T Consensus 127 fdln~p~Ap---p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~ 203 (334)
T KOG0278|consen 127 FDLNRPKAP---PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY 203 (334)
T ss_pred hhccCCCCC---chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec
Confidence 999987653 345668999999999999888899999999999999999988776654322
Q ss_pred --------------------CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee-cCCCcceeEEEeecCCCEEE
Q 026679 144 --------------------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFV 202 (235)
Q Consensus 144 --------------------~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~ 202 (235)
+..|.+..++|+...+++|++|..++.||..+++.+..+ ++|.++|.|+.|+|+|...+
T Consensus 204 gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yA 283 (334)
T KOG0278|consen 204 GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYA 283 (334)
T ss_pred CceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceee
Confidence 134555666777778899999999999999999998886 89999999999999999999
Q ss_pred Ecc--cceEEeeCCCCCCC
Q 026679 203 AAS--SVLSFWIPNPSSNS 219 (235)
Q Consensus 203 ~~~--~~i~iw~~~~~~~~ 219 (235)
+|+ |+|++|.....+..
T Consensus 284 sGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 284 SGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ccCCCceEEEEEecCCCch
Confidence 999 99999998765544
No 47
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=1.4e-30 Score=198.56 Aligned_cols=210 Identities=19% Similarity=0.267 Sum_probs=176.1
Q ss_pred hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcce----eeeeeeccCCce--EEEcCC-CCEEEEEecCCeEEEE
Q 026679 9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA----CQGILRLRGRPT--VAFDQQ-GLVFAVAMEAGAIKLF 81 (235)
Q Consensus 9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~~--~~~~~~-~~~l~~~~~dg~v~i~ 81 (235)
.+.||++.|.++....+|.+|+|||.|.++++|.++++. ++....+|...+ ++++.. ...|++++.|+++++|
T Consensus 360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W 439 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW 439 (775)
T ss_pred EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEe
Confidence 578999999999966677899999999999999885443 344455666544 777654 3689999999999999
Q ss_pred eccCCCCCCc-eeE----eecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC
Q 026679 82 DSRSYDKGPF-DTF----LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG 156 (235)
Q Consensus 82 d~~~~~~~~~-~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 156 (235)
++...+.... ..+ ....|...|++++++|+.+.+++|+.|++.++|++...+....+. +|...+.++.|+|..
T Consensus 440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs--GH~RGvw~V~Fs~~d 517 (775)
T KOG0319|consen 440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS--GHTRGVWCVSFSKND 517 (775)
T ss_pred cCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee--CCccceEEEEecccc
Confidence 9987332111 122 345789999999999999999999999999999999777766555 555679999999999
Q ss_pred cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCCC
Q 026679 157 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNST 220 (235)
Q Consensus 157 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~ 220 (235)
+.+++++.|++|+||.+.+..++.++.+|...|..+.|..++..|++++ |-+++|++++.....
T Consensus 518 q~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 518 QLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred ceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh
Confidence 9999999999999999999999999999999999999999999999998 889999998875443
No 48
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=5.2e-30 Score=184.92 Aligned_cols=207 Identities=18% Similarity=0.293 Sum_probs=180.7
Q ss_pred chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEE
Q 026679 2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK 79 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~ 79 (235)
..++.+..|+||...|+.+.++|+...+++++.|..|+||.............|..++ +..+|.|++|++++.|+...
T Consensus 249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~ 328 (506)
T KOG0289|consen 249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWA 328 (506)
T ss_pred chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEE
Confidence 3578899999999999999999999999999999999999998887777777787666 88899999999999999999
Q ss_pred EEeccCCCCCCceeEeec--CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679 80 LFDSRSYDKGPFDTFLVG--GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 157 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (235)
+.|++++.. ..... ...-.+++.+|+|||..|.+|..|+.|++||+.++.....|. +|.++|..++|+.+|-
T Consensus 329 Fsd~~~g~~----lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp--ght~~vk~i~FsENGY 402 (506)
T KOG0289|consen 329 FSDISSGSQ----LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP--GHTGPVKAISFSENGY 402 (506)
T ss_pred EEEccCCcE----EEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC--CCCCceeEEEeccCce
Confidence 999998764 22222 223458999999999999999999999999999988776554 5778899999999999
Q ss_pred EEEEeCCCCcEEEEEcCCCceeeeecCCC-cceeEEEeecCCCEEEEcccceEEeeCC
Q 026679 158 YVVSGSGDGTLHAWNINTRNEVACWNGNI-GVVACLKWAPRRAMFVAASSVLSFWIPN 214 (235)
Q Consensus 158 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~i~iw~~~ 214 (235)
||+++++|+.|++||+|..+...++.... .++.++.|.+.|.+|+.++.+++||.+.
T Consensus 403 ~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 403 WLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred EEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 99999999999999999988877776432 3799999999999999999999998876
No 49
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=9.4e-31 Score=181.85 Aligned_cols=208 Identities=19% Similarity=0.267 Sum_probs=172.7
Q ss_pred hhcccccceeEEEeecCCCeeEEEeccceEEEEecCc------------c------eeeeeeeccC--CceEEEcCCCCE
Q 026679 9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV------------N------ACQGILRLRG--RPTVAFDQQGLV 68 (235)
Q Consensus 9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~------------~------~~~~~~~~~~--~~~~~~~~~~~~ 68 (235)
.+..|.+++.+.+|+|||.++|+|+.|..|+|.|++. + ..++++-.|. ++.+.|+|....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 3567999999999999999999999999999999861 1 1223333333 445999999999
Q ss_pred EEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec-cCCCCCcc
Q 026679 69 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTN 147 (235)
Q Consensus 69 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~i 147 (235)
|++++.|++|++||+...... ..++......+|.++.|+|.|++|++|..-..+++||+.+-++...-. -..|.+.|
T Consensus 187 LiS~srD~tvKlFDfsK~saK--rA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAK--RAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred EEeccCCCeEEEEecccHHHH--HHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 999999999999999764431 133444556789999999999999999999999999999988764433 34577899
Q ss_pred eeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec-CCC-cceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679 148 TEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNI-GVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 148 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~ 218 (235)
+++.+++.|++.++++.||.|++||--+++++.++. .|. ..|.+..|..+++|+++++ +.+++|.+.++..
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 999999999999999999999999999999998884 454 4899999999999999998 6799999977643
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=1.8e-30 Score=179.22 Aligned_cols=207 Identities=21% Similarity=0.302 Sum_probs=179.9
Q ss_pred CchhhhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeE
Q 026679 1 MYDNRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAI 78 (235)
Q Consensus 1 l~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v 78 (235)
+++|+.++.+++|.+-|+++.-+.-| .++.+++.|+++++||+++...++++.... ...+.|..++..+.+|+-|+.|
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~i 198 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDI 198 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCce
Confidence 47899999999999999999865555 567899999999999999998888886544 4558999999999999999999
Q ss_pred EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC----ceeeeeccCCCC--CcceeeEE
Q 026679 79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG----EKRCGFSLEPSP--NTNTEATF 152 (235)
Q Consensus 79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~--~~i~~~~~ 152 (235)
++||++..+. ...+.+|..+|+.+..+|+|.++++-+.|.++++||++.. .++..+..+.|. .....++|
T Consensus 199 kvWd~r~~d~----~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 199 KVWDLRKNDG----LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred eeeccccCcc----eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence 9999998876 8889999999999999999999999999999999999753 345666655554 23456799
Q ss_pred eCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcccceEEe
Q 026679 153 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFW 211 (235)
Q Consensus 153 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw 211 (235)
+|+++++.+|+.|..+++||......+..+.+|.+.|.+++|+|...+|.+++.+-+||
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~ 333 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIY 333 (338)
T ss_pred cCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeE
Confidence 99999999999999999999998899999999999999999999999999998554443
No 51
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.5e-30 Score=197.73 Aligned_cols=207 Identities=20% Similarity=0.388 Sum_probs=182.0
Q ss_pred hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCc-----ceeee--------eeeccC-CceEEEcCCCCE
Q 026679 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV-----NACQG--------ILRLRG-RPTVAFDQQGLV 68 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-----~~~~~--------~~~~~~-~~~~~~~~~~~~ 68 (235)
...++.++++|.+.|++++.+||+..+++||.|.+|++||..- +...+ +++... +-++.++||+++
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 4567788899999999999999999999999999999999742 22212 222222 345899999999
Q ss_pred EEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcce
Q 026679 69 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT 148 (235)
Q Consensus 69 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~ 148 (235)
|+++--|.+|++|-+.+.+. ...+.+|.-||.|+..+||++.+++|+.|.+|++|-+.=|.+.+.+- .|...|+
T Consensus 523 LaVsLLdnTVkVyflDtlKF----flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f--AHdDSvm 596 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKF----FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF--AHDDSVM 596 (888)
T ss_pred EEEEeccCeEEEEEecceee----eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh--cccCcee
Confidence 99999999999999998775 77889999999999999999999999999999999999898877654 4556799
Q ss_pred eeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679 149 EATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 149 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~ 215 (235)
++.|-|...++.+++.|+.|+-||-...+.+..+.+|...|++++.+|+|.++++++ .+|++|.-..
T Consensus 597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999999999999999999999999999999999999999999999999999999998 6799998754
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.3e-29 Score=207.62 Aligned_cols=198 Identities=12% Similarity=0.191 Sum_probs=162.9
Q ss_pred hcccccceeEEEeecCCCeeEEEeccceEEEEecCcc----e----eeeeeecc-CCceEEEcC-CCCEEEEEecCCeEE
Q 026679 10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN----A----CQGILRLR-GRPTVAFDQ-QGLVFAVAMEAGAIK 79 (235)
Q Consensus 10 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~----~----~~~~~~~~-~~~~~~~~~-~~~~l~~~~~dg~v~ 79 (235)
+..|.+.|.+++|+|++++|++|+.|+.|+|||+... . ....+..+ ....++|++ ++..|++++.||.|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 4568999999999999999999999999999997532 1 11122222 233488887 578999999999999
Q ss_pred EEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEe-CCCc
Q 026679 80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQ 157 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 157 (235)
+||+.+.+. ...+.+|...|.+++|+| ++.+|++++.|+.|++||++++.....+..+ ..+.++.|+ +++.
T Consensus 559 lWd~~~~~~----~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~---~~v~~v~~~~~~g~ 631 (793)
T PLN00181 559 VWDVARSQL----VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK---ANICCVQFPSESGR 631 (793)
T ss_pred EEECCCCeE----EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC---CCeEEEEEeCCCCC
Confidence 999987553 556678999999999997 7889999999999999999998877666532 458889995 5799
Q ss_pred EEEEeCCCCcEEEEEcCCCc-eeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679 158 YVVSGSGDGTLHAWNINTRN-EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 158 ~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~ 215 (235)
+|++|+.||.|++||+++.+ .+..+.+|...|.++.|. ++.++++++ +.+++||+..
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence 99999999999999998765 466778899999999997 677888886 7899999864
No 53
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.3e-30 Score=173.38 Aligned_cols=206 Identities=21% Similarity=0.318 Sum_probs=177.3
Q ss_pred CchhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcc--eeeeeeeccCCceEEEcCCCCEEEEEecCCeE
Q 026679 1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN--ACQGILRLRGRPTVAFDQQGLVFAVAMEAGAI 78 (235)
Q Consensus 1 l~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v 78 (235)
+++|+.++.|++|.+.|+.++|+.+...+++|+.|.++++||.+.. ++++.+......+..+.-.+..+++|+.||++
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtv 167 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTV 167 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcE
Confidence 4689999999999999999999999999999999999999999865 56677766556666666678899999999999
Q ss_pred EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679 79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 158 (235)
Q Consensus 79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (235)
+.||++.+.. . ......+|++++|+++++..++++-|+++++.|-.+|+.+..+..+.....-..++++.....
T Consensus 168 RtydiR~G~l----~--sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdth 241 (307)
T KOG0316|consen 168 RTYDIRKGTL----S--SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTH 241 (307)
T ss_pred EEEEeeccee----e--hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccccee
Confidence 9999998764 2 223346899999999999999999999999999999999999988877766677888888899
Q ss_pred EEEeCCCCcEEEEEcCCCceeeeecCCCcc-eeEEEeecCCCEEEEcc-cceEEee
Q 026679 159 VVSGSGDGTLHAWNINTRNEVACWNGNIGV-VACLKWAPRRAMFVAAS-SVLSFWI 212 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~-~~i~iw~ 212 (235)
+++|++||.+++||+.+...+..+..+... +.++.++|....++++. +....|.
T Consensus 242 V~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 242 VFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred EEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceecee
Confidence 999999999999999999999999888776 89999999876666665 5566664
No 54
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.6e-30 Score=198.77 Aligned_cols=207 Identities=20% Similarity=0.294 Sum_probs=175.0
Q ss_pred hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcC-CCCEEEEEecCCeEEEE
Q 026679 4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQ-QGLVFAVAMEAGAIKLF 81 (235)
Q Consensus 4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~~~dg~v~i~ 81 (235)
.++++.|+||.+.|.++.||.+ ++|+++|.|.+||+|++....+++.+.... +++++|+| |.++|++|+-||.++||
T Consensus 359 ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiW 437 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLW 437 (712)
T ss_pred ccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEe
Confidence 4678999999999999999974 699999999999999999999999998766 66799999 88999999999999999
Q ss_pred eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCC------CCcceeeEEeCC
Q 026679 82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS------PNTNTEATFTPD 155 (235)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~------~~~i~~~~~~~~ 155 (235)
++...+ ......-..-|++++|.|||+..++|+.+|.+++|+....+.........+ ...|+.+.|.|.
T Consensus 438 sI~d~~-----Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~ 512 (712)
T KOG0283|consen 438 SISDKK-----VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPG 512 (712)
T ss_pred ecCcCe-----eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCC
Confidence 998755 334444557899999999999999999999999999988877665544322 236999999984
Q ss_pred -CcEEEEeCCCCcEEEEEcCCCceeeeecCCCc--ceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679 156 -GQYVVSGSGDGTLHAWNINTRNEVACWNGNIG--VVACLKWAPRRAMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 156 -~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~ 216 (235)
...+++.+.|..|+|||.++..++..++++.. .-....|+.||++|++++ ..+++|+++..
T Consensus 513 ~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 513 DPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 44688888999999999999999888886633 345678999999999999 55999998543
No 55
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=7.5e-30 Score=197.75 Aligned_cols=211 Identities=18% Similarity=0.299 Sum_probs=183.9
Q ss_pred hhhhhhh-hcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEE
Q 026679 3 DNRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLF 81 (235)
Q Consensus 3 ~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~ 81 (235)
+++.+.. +.||.+.|+++++...+..+++|+.|.++++||..++++...+.+|...+.+++-....+++|+.|.+|++|
T Consensus 237 ~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW 316 (537)
T KOG0274|consen 237 NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVW 316 (537)
T ss_pred cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEE
Confidence 4555666 999999999999987778999999999999999999999999999998888888888899999999999999
Q ss_pred eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679 82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 161 (235)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 161 (235)
++.++.. ...+.+|..+|+++..+ +.++++|+.|+.|.+||+.+++++..+.. |...|.++.+.+. ..+++
T Consensus 317 ~v~n~~~----l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g--H~~~V~sl~~~~~-~~~~S 387 (537)
T KOG0274|consen 317 DVTNGAC----LNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG--HTGRVYSLIVDSE-NRLLS 387 (537)
T ss_pred eccCcce----EEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC--CcceEEEEEecCc-ceEEe
Confidence 9997664 55566699999999997 77999999999999999999999887765 6677999988665 89999
Q ss_pred eCCCCcEEEEEcCCC-ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCCCCCCC
Q 026679 162 GSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDEST 224 (235)
Q Consensus 162 ~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~~~~~ 224 (235)
|+.|+.|++||+++. +++.++.+|.+.+..+.+ .+++|++++ +.|++||.+..........
T Consensus 388 gs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 388 GSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred eeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence 999999999999999 999999999988866655 567888887 8899999987665544433
No 56
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=4.7e-29 Score=169.83 Aligned_cols=212 Identities=17% Similarity=0.218 Sum_probs=177.3
Q ss_pred hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCC
Q 026679 9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSY 86 (235)
Q Consensus 9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~ 86 (235)
.++||..+++.+.++.+|.+|++++.|.+..||-..+|+.+.++.+|...+ +..+.+.+.+++|+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 478999999999999999999999999999999998999999999999776 777888999999999999999999998
Q ss_pred CCCCceeEeecCCCcceeEEEEccCCCeEEEecC-----CCcEEEEEcCC-------CceeeeeccCCCCCcceeeEEeC
Q 026679 87 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-----NNNIYVLDAYG-------GEKRCGFSLEPSPNTNTEATFTP 154 (235)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~-------~~~~~~~~~~~~~~~i~~~~~~~ 154 (235)
+. ... -....+|..+.|+++|++++...+ .+.|.++|++. .++...+. .+...++.+.|.|
T Consensus 85 k~----la~-~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~--t~~skit~a~Wg~ 157 (327)
T KOG0643|consen 85 KQ----LAT-WKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP--TPDSKITSALWGP 157 (327)
T ss_pred cE----EEE-eecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec--CCccceeeeeecc
Confidence 85 222 234578999999999998777654 46799999983 33343333 3446799999999
Q ss_pred CCcEEEEeCCCCcEEEEEcCCCce-eeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC-CCCCCCCCC
Q 026679 155 DGQYVVSGSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN-STDESTDPQ 227 (235)
Q Consensus 155 ~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~-~~~~~~~~~ 227 (235)
-+++|++|.+||.|..||+++++. +.....|...|+.|+++||..++++++ .+-++||..+-+. +++....|.
T Consensus 158 l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~Pv 234 (327)
T KOG0643|consen 158 LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPV 234 (327)
T ss_pred cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccc
Confidence 999999999999999999999754 555678999999999999999999999 6699999976543 344444443
No 57
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.2e-29 Score=195.92 Aligned_cols=215 Identities=16% Similarity=0.215 Sum_probs=188.7
Q ss_pred chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEE
Q 026679 2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK 79 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~ 79 (235)
.+.+++.++.||-+.|..+.|++.-.+++++|.|.+|+||+..+++++..+.+|...+ ..|+|....+++++-|-+|+
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence 3567889999999999999999999999999999999999999999999999998665 77999999999999999999
Q ss_pred EEeccCCCCC-------------------------CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce
Q 026679 80 LFDSRSYDKG-------------------------PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 134 (235)
Q Consensus 80 i~d~~~~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 134 (235)
+||+...... ....+.+.+|...|+-++|+|.-..+++|++|..|++|.+...+.
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 9998642211 112345678999999999999999999999999999999987666
Q ss_pred eeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeC
Q 026679 135 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIP 213 (235)
Q Consensus 135 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~ 213 (235)
-..-...+|.+.|.++-|+|...++++.++|++|+|||+...+.++++.......+.++-+|..+++++|- +.+.||.+
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKL 320 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEE
Confidence 55555667888899999999999999999999999999999999999987788999999999999999986 66777777
Q ss_pred CCC
Q 026679 214 NPS 216 (235)
Q Consensus 214 ~~~ 216 (235)
+..
T Consensus 321 eRE 323 (1202)
T KOG0292|consen 321 ERE 323 (1202)
T ss_pred ccc
Confidence 643
No 58
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.7e-30 Score=196.98 Aligned_cols=201 Identities=12% Similarity=0.170 Sum_probs=156.7
Q ss_pred hhhhc-ccccceeEEEeecCCCeeEEEeccceEEEEecCcce--------------------------------------
Q 026679 7 LRYFK-GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-------------------------------------- 47 (235)
Q Consensus 7 ~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-------------------------------------- 47 (235)
.+.++ +|.+.|+++.||+||++||+|+.|+.|+||.+...+
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 45566 899999999999999999999999999999875400
Q ss_pred ----------------------eeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcce
Q 026679 48 ----------------------CQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV 103 (235)
Q Consensus 48 ----------------------~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v 103 (235)
++..+.+|...+ +.|+. ..+|++++.|.+|++|++...+. +....|...|
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~C-----L~~F~HndfV 412 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKEC-----LKVFSHNDFV 412 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcce-----eeEEecCCee
Confidence 001111222223 34443 45899999999999999987653 4556799999
Q ss_pred eEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee
Q 026679 104 CDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 182 (235)
Q Consensus 104 ~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 182 (235)
+|++|+| |.+++++|+-|+.|++|++...+...-..++ .-|++++|.|||++.+.|+.+|.+++|+....+.....
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~---~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR---DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh---hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 9999999 8899999999999999999888776544443 56999999999999999999999999999877765544
Q ss_pred cC--C------CcceeEEEeecCCC--EEEEcc-cceEEeeCCCC
Q 026679 183 NG--N------IGVVACLKWAPRRA--MFVAAS-SVLSFWIPNPS 216 (235)
Q Consensus 183 ~~--~------~~~v~~~~~~~~~~--~l~~~~-~~i~iw~~~~~ 216 (235)
.. | ...|+++.|.|... .|++.. ..|+|||.+..
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~ 534 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK 534 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch
Confidence 21 1 23799999998443 555554 78999999543
No 59
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=2.4e-29 Score=183.13 Aligned_cols=195 Identities=21% Similarity=0.303 Sum_probs=170.3
Q ss_pred cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCce
Q 026679 15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD 92 (235)
Q Consensus 15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 92 (235)
..|++++|+.+|..||+|+.||.+++|+. ++..+.++..|..++ +.|+..|.+|++++.|+++.+||..++..
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~---- 310 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV---- 310 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE----
Confidence 67999999999999999999999999995 788888888888777 88999999999999999999999987765
Q ss_pred eEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEE
Q 026679 93 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172 (235)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d 172 (235)
...+.-|..+-..+.|..+. .+++++.|+.|+++.+....+...+.. |.+.|.++.|+|.|.+|++++.|+++++|.
T Consensus 311 ~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~G--H~g~V~alk~n~tg~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIG--HHGEVNALKWNPTGSLLASCSDDGTLKIWS 387 (524)
T ss_pred EEeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeec--ccCceEEEEECCCCceEEEecCCCeeEeee
Confidence 44444566666778888654 589999999999999988888877765 667899999999999999999999999999
Q ss_pred cCCCceeeeecCCCcceeEEEeecCC---------CEEEEcc--cceEEeeCCCCC
Q 026679 173 INTRNEVACWNGNIGVVACLKWAPRR---------AMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~--~~i~iw~~~~~~ 217 (235)
.........+.+|...|..+.|+|+| ..+++++ +++++||+..+.
T Consensus 388 ~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv 443 (524)
T KOG0273|consen 388 MGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV 443 (524)
T ss_pred cCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc
Confidence 99999999999999999999999954 4666666 889999997654
No 60
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-29 Score=171.47 Aligned_cols=197 Identities=17% Similarity=0.280 Sum_probs=163.0
Q ss_pred ccceeEEEeecCC-CeeEEEeccceEEEEecCcc-eeeeeeeccCCce--EEEcC-CCCEEEEEecCCeEEEEeccCCCC
Q 026679 14 KERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVN-ACQGILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLFDSRSYDK 88 (235)
Q Consensus 14 ~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~ 88 (235)
.+.+..++|+++. +.+++++.||++++||+... .++..++.|...+ +.|++ ....+++++.|++|++|+...++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 4678899999964 67899999999999996543 4777888887666 66776 567788889999999999987665
Q ss_pred CCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEEEEeCCCC
Q 026679 89 GPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVSGSGDG 166 (235)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg 166 (235)
...+.+|..-|...+|+| .++.+++++.|+.+++||++.......+.. |...+.++.|+. +.+.|++|+.|+
T Consensus 140 ----v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a--h~~Eil~cdw~ky~~~vl~Tg~vd~ 213 (311)
T KOG0277|consen 140 ----VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA--HNSEILCCDWSKYNHNVLATGGVDN 213 (311)
T ss_pred ----eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe--ccceeEeecccccCCcEEEecCCCc
Confidence 667889999999999999 678899999999999999987655544444 446699999998 567889999999
Q ss_pred cEEEEEcCCC-ceeeeecCCCcceeEEEeecCC-CEEEEcc--cceEEeeCCCC
Q 026679 167 TLHAWNINTR-NEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 167 ~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~~i~iw~~~~~ 216 (235)
.|++||+++. .++.++.+|.-.|..+.|+|.. ..|++++ -+++||++...
T Consensus 214 ~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 214 LVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred eEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 9999999875 4678889999999999999965 5667777 66999998743
No 61
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.4e-29 Score=173.51 Aligned_cols=202 Identities=18% Similarity=0.262 Sum_probs=168.2
Q ss_pred hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCC--EEEEEecCCeEEEE
Q 026679 6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGL--VFAVAMEAGAIKLF 81 (235)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~--~l~~~~~dg~v~i~ 81 (235)
++..+..|.++|++++.+ +.++|+||.|.+|+|||++.......+-.|...+ +.|.+.-. .|++|+.||.|.+|
T Consensus 35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 355678999999999997 7999999999999999999988888887776544 77877554 89999999999999
Q ss_pred eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-------
Q 026679 82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP------- 154 (235)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~------- 154 (235)
+...... ...+.+|...|+.++.+|.++.-++.+.|+.+++||+-.|+.-...++... .+.+.|+|
T Consensus 113 ~~~~W~~----~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~---at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 113 RVGSWEL----LKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK---ATLVSWSPQGDHFVV 185 (362)
T ss_pred EcCCeEE----eeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc---ceeeEEcCCCCEEEE
Confidence 9987654 667889999999999999999999999999999999988766554443322 12233433
Q ss_pred --------------------------------CCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEee--cCCCE
Q 026679 155 --------------------------------DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA--PRRAM 200 (235)
Q Consensus 155 --------------------------------~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~~ 200 (235)
++..|++|++|+.|.+||..+..+...+.+|..+|.++.+. |++.+
T Consensus 186 ~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~ 265 (362)
T KOG0294|consen 186 SGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEY 265 (362)
T ss_pred EeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceE
Confidence 34578888999999999999999999999999999999853 56889
Q ss_pred EEEcc--cceEEeeCCCC
Q 026679 201 FVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 201 l~~~~--~~i~iw~~~~~ 216 (235)
|++++ |.|+|||++..
T Consensus 266 lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 266 LVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEeccCceEEEEEcccc
Confidence 99987 88999999876
No 62
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=187.03 Aligned_cols=210 Identities=17% Similarity=0.271 Sum_probs=166.7
Q ss_pred hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcc-------eeeeeeeccCCceEEEcCCCCEEEEEecCCeEEE
Q 026679 8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-------ACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKL 80 (235)
Q Consensus 8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i 80 (235)
..+++|+..|.++++.|.|..|++|+.|.+|++||+... +.+.-...|.+.++.|++.+..|++.+.....++
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 357899999999999999999999999999999998642 2333445677788999999999999999999999
Q ss_pred EeccCCCCC--------CceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCc-eeeeec---cCCCCCcc
Q 026679 81 FDSRSYDKG--------PFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGE-KRCGFS---LEPSPNTN 147 (235)
Q Consensus 81 ~d~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~-~~~~~~---~~~~~~~i 147 (235)
+|-...+.. -.......+|...+++.+|+|+ .+.+++++.||++++||+...+ ..+.+. ......++
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 997654321 1123345689999999999995 5678999999999999997643 223332 23344678
Q ss_pred eeeEEeCCCcEEEEeCCCCcEEEEEcCCCce---eeeecCCCc--ceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679 148 TEATFTPDGQYVVSGSGDGTLHAWNINTRNE---VACWNGNIG--VVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 148 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~--~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~ 217 (235)
+.++|+|+|++||+|..||.|.+|+..+... ...-.+|.. .|++|.|+++|++|++-+ +++++||++..+
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 9999999999999999999999999854322 233356766 899999999999999988 779999997543
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=9.5e-29 Score=175.60 Aligned_cols=201 Identities=21% Similarity=0.307 Sum_probs=165.6
Q ss_pred hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecC-------------------------cceeeeeeeccCCce-
Q 026679 6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR-------------------------VNACQGILRLRGRPT- 59 (235)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-------------------------~~~~~~~~~~~~~~~- 59 (235)
.++..+||.+.|-+++..++|..+++||.|.+|+||+.. ++.++..+.+|..++
T Consensus 185 ~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs 264 (423)
T KOG0313|consen 185 ALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVS 264 (423)
T ss_pred HHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccccee
Confidence 445566999999999999999999999999999999932 122344556666555
Q ss_pred -EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-eeee
Q 026679 60 -VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCG 137 (235)
Q Consensus 60 -~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~ 137 (235)
+.|++ ...+++++.|.+|+.||+.++.. .... .....+.++..+|..++|++|+.|..+++||.+++. .+..
T Consensus 265 ~V~w~d-~~v~yS~SwDHTIk~WDletg~~----~~~~-~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~ 338 (423)
T KOG0313|consen 265 SVVWSD-ATVIYSVSWDHTIKVWDLETGGL----KSTL-TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVS 338 (423)
T ss_pred eEEEcC-CCceEeecccceEEEEEeecccc----eeee-ecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeE
Confidence 77777 77899999999999999998775 2222 234678999999999999999999999999999764 3344
Q ss_pred eccCCCCCcceeeEEeCCC-cEEEEeCCCCcEEEEEcCCCc-eeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679 138 FSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRN-EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 213 (235)
Q Consensus 138 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~ 213 (235)
+.+.+|.+.|.++.|+|.. ..|++|+.|+++++||+++.+ ++..+.+|...|.++.|.. +..+++|+ ++++|+..
T Consensus 339 ~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 339 QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEecc
Confidence 5667788899999999954 567899999999999999877 8999999999999999984 67888888 67888764
No 64
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2e-30 Score=181.57 Aligned_cols=209 Identities=20% Similarity=0.278 Sum_probs=175.0
Q ss_pred ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeecc----------CCceEEEcCCCCEEEEEecCCeEEEE
Q 026679 12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR----------GRPTVAFDQQGLVFAVAMEAGAIKLF 81 (235)
Q Consensus 12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~dg~v~i~ 81 (235)
+....+-|..|+|||++|++|+.||.|.+||..+|+..+-++-. .+.++.|+.|.+++++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 34567889999999999999999999999999998766554322 23458899999999999999999999
Q ss_pred eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679 82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 161 (235)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 161 (235)
.++++.+ ....-..|...|+++.|+.|+..+++++.|.++++.-+.+|+.++.+.. |...|+...|.++|..+++
T Consensus 291 ri~tG~C---lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG--HsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 291 RIETGQC---LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG--HSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred EEecchH---HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC--ccccccceEEcCCCCeEEE
Confidence 9999876 2222347899999999999999999999999999999999999987664 5567999999999999999
Q ss_pred eCCCCcEEEEEcCCCceeeeecCC--CcceeEEEeecC-CCEEEEcc--cceEEeeCCCCCCCCCCCCC
Q 026679 162 GSGDGTLHAWNINTRNEVACWNGN--IGVVACLKWAPR-RAMFVAAS--SVLSFWIPNPSSNSTDESTD 225 (235)
Q Consensus 162 ~~~dg~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~-~~~l~~~~--~~i~iw~~~~~~~~~~~~~~ 225 (235)
++.||+|++|+.++.+++.+++.. ..+|.++..-|. -..++.+. +++.|.++.+.-...+.++.
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGk 434 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGK 434 (508)
T ss_pred ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCC
Confidence 999999999999999999888743 457888887774 35666665 77999998887776666543
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.9e-29 Score=180.91 Aligned_cols=203 Identities=24% Similarity=0.406 Sum_probs=170.4
Q ss_pred chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEE
Q 026679 2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKL 80 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i 80 (235)
.+.++..+|.||++.|+++.|......+++|+.|.+|+.||+....+.+++-... ..-++.+ ...+++|-.|+.|++
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRf 326 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRF 326 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEE
Confidence 4678899999999999999999876669999999999999999887776654332 2224444 567888999999999
Q ss_pred EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC--CcceeeEEeCCCcE
Q 026679 81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP--NTNTEATFTPDGQY 158 (235)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~ 158 (235)
||.+.... ......+ +.|+++..++++..+++++.|.++.+.|+++.+....+...+.. ...+.+.|||++.|
T Consensus 327 wD~Rs~~~----~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Y 401 (459)
T KOG0288|consen 327 WDIRSADK----TRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSY 401 (459)
T ss_pred EeccCCce----eeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCce
Confidence 99998765 4444333 48999999999999999999999999999999988877654322 34788999999999
Q ss_pred EEEeCCCCcEEEEEcCCCceeeeecCCCc--ceeEEEeecCCCEEEEcc--cceEEe
Q 026679 159 VVSGSGDGTLHAWNINTRNEVACWNGNIG--VVACLKWAPRRAMFVAAS--SVLSFW 211 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~--~~i~iw 211 (235)
+++|+.||.|+||++.++++...+..... .|++++|+|.|..+++++ +.+.+|
T Consensus 402 vaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 402 VAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 99999999999999999999888876554 499999999999999998 558888
No 66
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=3.5e-28 Score=179.31 Aligned_cols=223 Identities=15% Similarity=0.238 Sum_probs=187.9
Q ss_pred chhhhhhhhcccccceeEEEeecCCC-eeEEEeccceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecCCeE
Q 026679 2 YDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEAGAI 78 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v 78 (235)
++|.-+.++.||+..|+++.|-|... +++||+.|++|.+|+=...+...++..|. +.++.|+|||+++++.+.||.+
T Consensus 135 DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki 214 (603)
T KOG0318|consen 135 DSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKI 214 (603)
T ss_pred cCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccE
Confidence 45667788999999999999999765 59999999999999876666666777666 4559999999999999999999
Q ss_pred EEEeccCCCCCCceeEeec---CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCC-CCcceeeEEeC
Q 026679 79 KLFDSRSYDKGPFDTFLVG---GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS-PNTNTEATFTP 154 (235)
Q Consensus 79 ~i~d~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~i~~~~~~~ 154 (235)
.+||-.+++. ...+. +|.+.|.+++|+||+..+++++.|.++++||+.+.++.+++.+... ...-..+.|.
T Consensus 215 ~iyDGktge~----vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq- 289 (603)
T KOG0318|consen 215 YIYDGKTGEK----VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ- 289 (603)
T ss_pred EEEcCCCccE----EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-
Confidence 9999988875 44444 8999999999999999999999999999999999999988876543 1223344564
Q ss_pred CCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCCCCCCCCCCCCc
Q 026679 155 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDESTDPQATV 230 (235)
Q Consensus 155 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~~~~~~~~~~i 230 (235)
+..|++.+.+|.|.+++...+..+..+.+|...|+++..+|++.+|++|+ |.|.-|+...+....+........|
T Consensus 290 -kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI 366 (603)
T KOG0318|consen 290 -KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI 366 (603)
T ss_pred -CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence 56899999999999999999999999999999999999999999999998 8899999987766655444333433
No 67
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.6e-29 Score=187.12 Aligned_cols=203 Identities=23% Similarity=0.352 Sum_probs=167.3
Q ss_pred hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec-cCCceEEEcCCCCEEEEEecCCeEEEEeccCCC
Q 026679 9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL-RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYD 87 (235)
Q Consensus 9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 87 (235)
....+...|+++.|+++|.+|+.|..+|.|.|||..+.+.+..+.. |...+.+...++..+.+|+.++.|..+|++..+
T Consensus 212 l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 212 LCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred eEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecch
Confidence 3344578999999999999999999999999999999988888888 776664444458899999999999999999866
Q ss_pred CCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEEEEeC--C
Q 026679 88 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVSGS--G 164 (235)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~ 164 (235)
... . .+.+|...|+.+.|++|+.++++|+.|+.+.+||....++.. ....|...|.+++|+| ...+||+|+ .
T Consensus 292 ~~~--~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~--~~~~H~aAVKA~awcP~q~~lLAsGGGs~ 366 (484)
T KOG0305|consen 292 HVV--S-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF--TFTEHTAAVKALAWCPWQSGLLATGGGSA 366 (484)
T ss_pred hhh--h-hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE--EEeccceeeeEeeeCCCccCceEEcCCCc
Confidence 411 1 377899999999999999999999999999999996666554 4456667899999999 566788765 4
Q ss_pred CCcEEEEEcCCCce-------------------------------------------eeeecCCCcceeEEEeecCCCEE
Q 026679 165 DGTLHAWNINTRNE-------------------------------------------VACWNGNIGVVACLKWAPRRAMF 201 (235)
Q Consensus 165 dg~i~v~d~~~~~~-------------------------------------------~~~~~~~~~~v~~~~~~~~~~~l 201 (235)
|+.|++||..+++. +..+.+|...|..++++|||..+
T Consensus 367 D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i 446 (484)
T KOG0305|consen 367 DRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETI 446 (484)
T ss_pred ccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEE
Confidence 88888888776532 33456788899999999999999
Q ss_pred EEcc--cceEEeeCCCC
Q 026679 202 VAAS--SVLSFWIPNPS 216 (235)
Q Consensus 202 ~~~~--~~i~iw~~~~~ 216 (235)
++|+ +++++|++-..
T Consensus 447 ~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 447 VTGAADETLRFWNLFDE 463 (484)
T ss_pred EEecccCcEEeccccCC
Confidence 9987 77999988553
No 68
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.8e-28 Score=166.49 Aligned_cols=200 Identities=20% Similarity=0.323 Sum_probs=168.0
Q ss_pred hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeee--eccCCce--EEEcC-CCCEEEEEecCCeEEEEe
Q 026679 8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL--RLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLFD 82 (235)
Q Consensus 8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~d 82 (235)
+.+++|.++|.+++|+.+|..|++|+.|+++++|+++..+..... .+|...+ ++|+| +...|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 678899999999999999999999999999999999877554443 3444333 77777 678999999999999999
Q ss_pred ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679 83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 162 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (235)
++..+. ........+. .-+.|+|+|++++++..|..|...|.++.+.....+.. ..+..++|+-++.+++..
T Consensus 94 ~r~~k~----~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~---~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 94 IRSGKC----TARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK---FEVNEISWNNSNDLFFLT 165 (313)
T ss_pred eccCcE----EEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc---ceeeeeeecCCCCEEEEe
Confidence 998775 3322222233 34789999999999999999999999998877665544 346778999888888888
Q ss_pred CCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679 163 SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 163 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~ 215 (235)
...|.|.|......+++..+++|.....||.|+|+|+++++|+ ..+.+||++.
T Consensus 166 ~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E 220 (313)
T KOG1407|consen 166 NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE 220 (313)
T ss_pred cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH
Confidence 8889999999999999999999999999999999999999999 5599999875
No 69
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.6e-28 Score=166.76 Aligned_cols=192 Identities=24% Similarity=0.423 Sum_probs=167.4
Q ss_pred hhcccccceeEEEeecC-CCeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEecCCeEEEEeccCC
Q 026679 9 YFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSY 86 (235)
Q Consensus 9 ~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~ 86 (235)
..++|.+.|-.++|+|. ...|++++.|.+|++||++.+++...+.....+. +.|+|+|+++++++.|..|...|.++.
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~ 138 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTY 138 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEeccc
Confidence 35789999999999985 4789999999999999999999999988877776 999999999999999999999999886
Q ss_pred CCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC
Q 026679 87 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 166 (235)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (235)
+. .........+..++|+-++..++.....|.|.+......+++..++ .|+....|+.|+|+|++||+|+.|-
T Consensus 139 ~~-----~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~--AH~snCicI~f~p~GryfA~GsADA 211 (313)
T KOG1407|consen 139 KI-----VNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK--AHPSNCICIEFDPDGRYFATGSADA 211 (313)
T ss_pred ce-----eehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccc--cCCcceEEEEECCCCceEeeccccc
Confidence 63 2233344567889999888877777778999999998877776554 5556789999999999999999999
Q ss_pred cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcccc
Q 026679 167 TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSV 207 (235)
Q Consensus 167 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 207 (235)
.+.+||+...-++..+..+.-+|..+.|+.+|++|++++.+
T Consensus 212 lvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED 252 (313)
T KOG1407|consen 212 LVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED 252 (313)
T ss_pred eeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc
Confidence 99999999999999999999999999999999999999944
No 70
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.6e-29 Score=178.28 Aligned_cols=204 Identities=17% Similarity=0.261 Sum_probs=169.0
Q ss_pred CchhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcce---eeeeeeccCCceEEEcCCCCEEEEEecCCe
Q 026679 1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA---CQGILRLRGRPTVAFDQQGLVFAVAMEAGA 77 (235)
Q Consensus 1 l~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 77 (235)
+++|+++.++-+|.+.|..+.|+ +.+++++|.|.++.+||+.... +.+.+.+|...+-...-+.+++++++.|.+
T Consensus 264 v~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRT 341 (499)
T KOG0281|consen 264 VNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRT 341 (499)
T ss_pred ccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCce
Confidence 36899999999999999999998 4799999999999999998764 344566666555344446779999999999
Q ss_pred EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679 78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 157 (235)
Q Consensus 78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (235)
+++|++.+.+. ...+.+|...|.|+.+ .++++++|+.|.+|++||+..|.++..++ +|+.-|.++.| |.+
T Consensus 342 ikvW~~st~ef----vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe--GHEeLvRciRF--d~k 411 (499)
T KOG0281|consen 342 IKVWSTSTCEF----VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE--GHEELVRCIRF--DNK 411 (499)
T ss_pred EEEEeccceee----ehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh--chHHhhhheee--cCc
Confidence 99999998775 6778899999988877 48899999999999999999999988665 45567999999 567
Q ss_pred EEEEeCCCCcEEEEEcCCCce---------eeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679 158 YVVSGSGDGTLHAWNINTRNE---------VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 158 ~l~~~~~dg~i~v~d~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~ 218 (235)
.+++|+.||+|+|||+..+.. +.++..|.+.|..+.| |...+++++ .+|-|||+.....
T Consensus 412 rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 412 RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 999999999999999986542 3455678899999999 456777776 7799999965543
No 71
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=1.1e-28 Score=178.06 Aligned_cols=199 Identities=18% Similarity=0.291 Sum_probs=179.5
Q ss_pred cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCce
Q 026679 15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD 92 (235)
Q Consensus 15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 92 (235)
..++++...|....+++|+.|.++.++|...++.+..+++|...+ +.++|+...+++++.|..|++|.......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---- 295 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---- 295 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC----
Confidence 457888888877889999999999999999999999999999776 88999999999999999999999877654
Q ss_pred eEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEE
Q 026679 93 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172 (235)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d 172 (235)
......|..+|+.+..+|.|+||++++.|+...+.|++++..+...........+++.+|+|||..|.+|..||.++|||
T Consensus 296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEE
Confidence 44566799999999999999999999999999999999999887766554446689999999999999999999999999
Q ss_pred cCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679 173 INTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~ 217 (235)
+.++..+..|.+|.++|..++|+.+|.+|++++ +.+++||++..+
T Consensus 376 lks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred cCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence 999999999999999999999999999999998 569999996543
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1e-28 Score=180.32 Aligned_cols=205 Identities=15% Similarity=0.219 Sum_probs=170.4
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCC-CCEEEEEecCCeEEEE
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQ-GLVFAVAMEAGAIKLF 81 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~-~~~l~~~~~dg~v~i~ 81 (235)
...+.+......|.++.|-.||++|++|...|.|+|+|+.+...+..+..|..++ ..|+|+ +..|++|+.|+.+++|
T Consensus 59 ~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~ 138 (487)
T KOG0310|consen 59 SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYW 138 (487)
T ss_pred hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEE
Confidence 3445566677899999999999999999999999999987777888888888776 889994 5678888889999999
Q ss_pred eccCCCCCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679 82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 160 (235)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (235)
|+.+... ...+.+|...|.+.+|+|. +..+++|+.||.|++||.+... ....++ .|..+|..+.+-|.|..++
T Consensus 139 d~s~a~v----~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~el-nhg~pVe~vl~lpsgs~ia 212 (487)
T KOG0310|consen 139 DLSTAYV----QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVEL-NHGCPVESVLALPSGSLIA 212 (487)
T ss_pred EcCCcEE----EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEe-cCCCceeeEEEcCCCCEEE
Confidence 9988652 6678899999999999995 5578899999999999999874 222333 2456799999999999999
Q ss_pred EeCCCCcEEEEEcCCCce-eeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679 161 SGSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 161 ~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~ 216 (235)
+++.. .++|||+.+|.. +.....|...|+|+.+..++..|++++ +.+++|++..-
T Consensus 213 sAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 213 SAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred EcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce
Confidence 98865 699999985554 455555999999999999999999998 88999996543
No 73
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=6.8e-29 Score=182.84 Aligned_cols=205 Identities=23% Similarity=0.386 Sum_probs=161.9
Q ss_pred hhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcce-eeeeeeccC-------CceEEEcCCCCEEEEEecCCeEE
Q 026679 9 YFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNA-CQGILRLRG-------RPTVAFDQQGLVFAVAMEAGAIK 79 (235)
Q Consensus 9 ~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~-------~~~~~~~~~~~~l~~~~~dg~v~ 79 (235)
.-+||...++|.+|+|.. +.|+|++.||++|+||+...+ ....++... ...++|+++++.||+|+.||.|.
T Consensus 263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ 342 (641)
T KOG0772|consen 263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQ 342 (641)
T ss_pred ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCcee
Confidence 347999999999999975 679999999999999997643 344443221 23489999999999999999999
Q ss_pred EEeccCCCCCCceeEeecCCCc--ceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-eeeeeccCCCCCcceeeEEeCCC
Q 026679 80 LFDSRSYDKGPFDTFLVGGDTA--EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDG 156 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~ 156 (235)
+|+.......+. ...-..|.. .|+++.|++||++|++-+.|+++++||++..+ ++.....-....+-+.++|||+.
T Consensus 343 ~W~~~~~~v~p~-~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~ 421 (641)
T KOG0772|consen 343 IWDKGSRTVRPV-MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD 421 (641)
T ss_pred eeecCCcccccc-eEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc
Confidence 999866554333 233345665 89999999999999999999999999999754 34433333334556789999999
Q ss_pred cEEEEeCC------CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEe-eCC
Q 026679 157 QYVVSGSG------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFW-IPN 214 (235)
Q Consensus 157 ~~l~~~~~------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw-~~~ 214 (235)
++|++|+. .|.+.+||..+...+..+......|..+.|+|.-+.|.+++ |+++|| |.+
T Consensus 422 kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 422 KLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred eEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 99999864 57899999999999998887788999999999877776665 677666 443
No 74
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.5e-28 Score=176.82 Aligned_cols=206 Identities=19% Similarity=0.341 Sum_probs=166.3
Q ss_pred hhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcce-------eeeeeeccCCce--EEEcC-CCCEEEEEecCC
Q 026679 8 RYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNA-------CQGILRLRGRPT--VAFDQ-QGLVFAVAMEAG 76 (235)
Q Consensus 8 ~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~-------~~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg 76 (235)
..|.||.+.=.+++|++.. ..|++++.|++|++||+.... ....+..|...+ ++|++ +..+|++++.|+
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence 3688999988899999964 579999999999999997543 344566676655 89998 667899999999
Q ss_pred eEEEEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC
Q 026679 77 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 155 (235)
Q Consensus 77 ~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 155 (235)
.+.|||+++. ..........|...+.|++|+| ++..||+|+.|++|.+||+|+... ....+..|...|.++.|+|.
T Consensus 251 ~L~iwD~R~~--~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh 327 (422)
T KOG0264|consen 251 KLMIWDTRSN--TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPH 327 (422)
T ss_pred eEEEEEcCCC--CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCC
Confidence 9999999973 2233566778999999999999 566788889999999999998665 34456677788999999995
Q ss_pred -CcEEEEeCCCCcEEEEEcCCC--------------ceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCC
Q 026679 156 -GQYVVSGSGDGTLHAWNINTR--------------NEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPS 216 (235)
Q Consensus 156 -~~~l~~~~~dg~i~v~d~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~ 216 (235)
...|++++.|+.+.|||+..- +++..-.||...|..+.|+|+..+++++- +.+.||.+...
T Consensus 328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred CCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 567889999999999998631 22355568999999999999998877664 77999998643
No 75
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5e-27 Score=163.29 Aligned_cols=213 Identities=13% Similarity=0.191 Sum_probs=172.9
Q ss_pred hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeecc--CCceEEEcCCCCEEEEEec--CCeE
Q 026679 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR--GRPTVAFDQQGLVFAVAME--AGAI 78 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~--dg~v 78 (235)
.-++.+.|+.-...|+++.|+++|.++++++.|.++++||..+++..+++..+ +...++|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 34556677777889999999999999999999999999999999999999877 4556888777666666665 8899
Q ss_pred EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec-------------------
Q 026679 79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS------------------- 139 (235)
Q Consensus 79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~------------------- 139 (235)
+..++.+.+. ..-+.+|...|..++.+|-++.+++++.|++|++||++..++...+.
T Consensus 83 ryLsl~dNky----lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 83 RYLSLHDNKY----LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALA 158 (311)
T ss_pred EEEEeecCce----EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEe
Confidence 9999988775 77788999999999999999999999999999999998554422211
Q ss_pred -----------------------cC-CCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcc---eeEE
Q 026679 140 -----------------------LE-PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV---VACL 192 (235)
Q Consensus 140 -----------------------~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~---v~~~ 192 (235)
+. ......+.+.|||||++|+.++..+.+++.|.-+|..+..+..+... ....
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence 11 11244667888899998888888888888888888888888766432 2577
Q ss_pred EeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679 193 KWAPRRAMFVAAS--SVLSFWIPNPSSNS 219 (235)
Q Consensus 193 ~~~~~~~~l~~~~--~~i~iw~~~~~~~~ 219 (235)
.|+||++++++|+ |.+.+|+++++...
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 8999999999998 88999999876543
No 76
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3.8e-27 Score=182.32 Aligned_cols=201 Identities=15% Similarity=0.124 Sum_probs=158.2
Q ss_pred ccceeEEEeecCCCeeEEEeccceEEEEecCcceee-------------eeeeccCCce--EEEcC-CCCEEEEEecCCe
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ-------------GILRLRGRPT--VAFDQ-QGLVFAVAMEAGA 77 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~-------------~~~~~~~~~~--~~~~~-~~~~l~~~~~dg~ 77 (235)
-..|.....++++..+++++.+.....|+...+..+ ..+.+|...+ ++|+| ++++|++++.|+.
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 345666667777777888888887788875443221 1344555444 89999 8899999999999
Q ss_pred EEEEeccCCCCC---CceeEeecCCCcceeEEEEccCC-CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEe
Q 026679 78 IKLFDSRSYDKG---PFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 153 (235)
Q Consensus 78 v~i~d~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ 153 (235)
|++||+...... ......+.+|...|.+++|+|++ +.|++++.|+.|++||+.+++....+. .|...|.+++|+
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~--~h~~~V~sla~s 177 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK--CHSDQITSLEWN 177 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc--CCCCceEEEEEE
Confidence 999999764321 11245677899999999999975 689999999999999999988776554 455679999999
Q ss_pred CCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcc-eeEEEeecCCCEEEEcc------cceEEeeCCCC
Q 026679 154 PDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV-VACLKWAPRRAMFVAAS------SVLSFWIPNPS 216 (235)
Q Consensus 154 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~------~~i~iw~~~~~ 216 (235)
|+|++|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ +.+++||++..
T Consensus 178 pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 178 LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 99999999999999999999999999888888764 45778999887777653 56999999753
No 77
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=169.11 Aligned_cols=194 Identities=18% Similarity=0.307 Sum_probs=166.3
Q ss_pred hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEec
Q 026679 6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDS 83 (235)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~ 83 (235)
-+..|..|++.|.+++.+|+.++++||+.|..-.+|++.++.....+..|...+ +.|+.+|.+||+|+-+|.|++|+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 345789999999999999999999999999999999999999888888888655 889999999999999999999999
Q ss_pred cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC
Q 026679 84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 163 (235)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 163 (235)
.++.. ...+...-..+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.. |..++++-.|.|+|+.++++.
T Consensus 136 stg~~----~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G--h~~~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 136 STGGE----QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG--HNSPCTCGEFIPDGKRILTGY 209 (399)
T ss_pred ccCce----EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC--CCCCcccccccCCCceEEEEe
Confidence 98765 444444556788899999999999999999999999998766666654 556799999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeecCC-CcceeEEEeecCCCEEEEcc
Q 026679 164 GDGTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAAS 205 (235)
Q Consensus 164 ~dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 205 (235)
.||+|++|++.+++++..+... ..+..++.++..+..++.|+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~ 252 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN 252 (399)
T ss_pred cCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence 9999999999999999888633 23566777777776666665
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.4e-27 Score=173.26 Aligned_cols=196 Identities=21% Similarity=0.254 Sum_probs=165.1
Q ss_pred hhhhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeeeeccCC--ceEEEcC-CCCEEEEEecCCeE
Q 026679 3 DNRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQ-QGLVFAVAMEAGAI 78 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~-~~~~l~~~~~dg~v 78 (235)
+...++.+++|+.+|..+.|+|.+ ..|++|+.|+.+++||+.+......+.+|.. .+.+++| ++.++++|+.||.|
T Consensus 99 ~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 99 SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV 178 (487)
T ss_pred cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence 345788999999999999999965 6788999999999999998887657777774 4588988 55689999999999
Q ss_pred EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679 79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 158 (235)
Q Consensus 79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (235)
++||++.... ......|..+|..+.+-|.|..+++++ ...+++||+.+|........ .|...|+|+++..++..
T Consensus 179 rl~DtR~~~~----~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~r 252 (487)
T KOG0310|consen 179 RLWDTRSLTS----RVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDSTR 252 (487)
T ss_pred EEEEeccCCc----eeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhh-cccceEEEEEeecCCce
Confidence 9999998652 334457889999999999999888776 45799999996655433332 36677999999999999
Q ss_pred EEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679 159 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 205 (235)
|++|+-|+.+++||+.+.+.++.+. ..++|.+++.+|+++.++.|-
T Consensus 253 LlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 253 LLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred EeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEec
Confidence 9999999999999999999998887 568999999999999999986
No 79
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.3e-28 Score=173.64 Aligned_cols=211 Identities=19% Similarity=0.356 Sum_probs=171.9
Q ss_pred hhhhhhhhcccccceeEEEeecCC---CeeEEEeccceEEEEecCccee----eeeeeccCCce--EEEcCCCCEEEEEe
Q 026679 3 DNRILRYFKGHKERVISLCMSPVN---DSFMSGSLDHSVRIWDLRVNAC----QGILRLRGRPT--VAFDQQGLVFAVAM 73 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~d~~i~vwd~~~~~~----~~~~~~~~~~~--~~~~~~~~~l~~~~ 73 (235)
.|+....+.||.++|.+++|.-.. ..|++++.|.++++|.++.++. ++...+|...+ +...+++..+++|+
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec
Confidence 477888899999999988885433 3599999999999999887643 33344666554 88889999999999
Q ss_pred cCCeEEEEeccCCC---------------------CCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC
Q 026679 74 EAGAIKLFDSRSYD---------------------KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG 132 (235)
Q Consensus 74 ~dg~v~i~d~~~~~---------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 132 (235)
.|.++.+|+..+.. ........+.+|..+|.++.|++ ...+++++.|.+|+.||+.++
T Consensus 213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence 99999999933211 11223566789999999999998 567999999999999999999
Q ss_pred ceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCc---eeeeecCCCcceeEEEeecCCCE-EEEcc--c
Q 026679 133 EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN---EVACWNGNIGVVACLKWAPRRAM-FVAAS--S 206 (235)
Q Consensus 133 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~-l~~~~--~ 206 (235)
+....+... ....++..+|..++|++|+.|..|++||.+++. ..+++.+|.+.|.++.|+|...+ |++++ +
T Consensus 292 ~~~~~~~~~---ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 292 GLKSTLTTN---KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred cceeeeecC---cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence 888766544 458999999999999999999999999998753 35678899999999999997655 55565 8
Q ss_pred ceEEeeCCCCC
Q 026679 207 VLSFWIPNPSS 217 (235)
Q Consensus 207 ~i~iw~~~~~~ 217 (235)
++++||++...
T Consensus 369 t~klWDvRS~k 379 (423)
T KOG0313|consen 369 TVKLWDVRSTK 379 (423)
T ss_pred eEEEEEeccCC
Confidence 89999998765
No 80
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=6.7e-29 Score=172.68 Aligned_cols=215 Identities=17% Similarity=0.291 Sum_probs=177.6
Q ss_pred hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeee----eccCCceEEEcCCCCEEEEEecCCeEEEE
Q 026679 6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL----RLRGRPTVAFDQQGLVFAVAMEAGAIKLF 81 (235)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~v~i~ 81 (235)
++++|-.|.++|+++.|+|....|++|+.|++|+++|+......+.+ ..+...++.|+|.|.++++|.....+++|
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY 243 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY 243 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE
Confidence 56788899999999999999999999999999999999765433322 23456679999999999999999999999
Q ss_pred eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679 82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 161 (235)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 161 (235)
|+++.+.-.. ...-..|...|+++.+++.++..++++.||.|++||--+++++..+........|.+..|..+|+|+++
T Consensus 244 dv~T~Qcfvs-anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs 322 (430)
T KOG0640|consen 244 DVNTYQCFVS-ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS 322 (430)
T ss_pred eccceeEeee-cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee
Confidence 9998764211 113456889999999999999999999999999999999998887765545577999999999999999
Q ss_pred eCCCCcEEEEEcCCCceeeeecCCC-----cceeEEEeecCCCEEEEcc---cceEEeeCCCCCCCCC
Q 026679 162 GSGDGTLHAWNINTRNEVACWNGNI-----GVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNSTD 221 (235)
Q Consensus 162 ~~~dg~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~~~~ 221 (235)
.+.|..+++|.+.+++.+..+.+.. ..-+...|+....|++.-+ +.+.-||.++.....+
T Consensus 323 SG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l 390 (430)
T KOG0640|consen 323 SGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL 390 (430)
T ss_pred cCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh
Confidence 9999999999999999999886541 1234566888888888876 6789999877654443
No 81
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=8.1e-27 Score=181.65 Aligned_cols=181 Identities=9% Similarity=0.123 Sum_probs=147.1
Q ss_pred EeccceEEEEecCcceeeeeeeccCCce--EEEcCC-CCEEEEEecCCeEEEEeccCCCCC----CceeEeecCCCccee
Q 026679 32 GSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQ-GLVFAVAMEAGAIKLFDSRSYDKG----PFDTFLVGGDTAEVC 104 (235)
Q Consensus 32 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~----~~~~~~~~~~~~~v~ 104 (235)
|+.++.+++|+......+..+.+|...+ ++|+|+ +.+|++|+.|+.|++||+.+.... ......+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 5668899999987777777888887655 899996 789999999999999999764321 012234678899999
Q ss_pred EEEEccCCCeE-EEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec
Q 026679 105 DIKFSNDGKSM-LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN 183 (235)
Q Consensus 105 ~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 183 (235)
+++|+|++..+ ++++.|+.|++||+++++....+. +...|.+++|+|+|++|++++.|+.|++||+++++.+..+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~---~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN---MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe---cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 99999988764 688999999999999988765553 23569999999999999999999999999999999999999
Q ss_pred CCCcceeEE-----EeecCCCEEEEcc--c----ceEEeeCCC
Q 026679 184 GNIGVVACL-----KWAPRRAMFVAAS--S----VLSFWIPNP 215 (235)
Q Consensus 184 ~~~~~v~~~-----~~~~~~~~l~~~~--~----~i~iw~~~~ 215 (235)
+|.+.+... .|++++.+|++++ + .++|||++.
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 998754332 3458888888876 2 599999974
No 82
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.9e-27 Score=182.12 Aligned_cols=206 Identities=18% Similarity=0.263 Sum_probs=177.1
Q ss_pred hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCC
Q 026679 9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK 88 (235)
Q Consensus 9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 88 (235)
.+.||...|.+++++.+...+++|+. +.+++|+..+.++++++......+..|.|.+++++.|...|.+.+||+.....
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence 46789999999999998877777765 68999999999999999988777789999999999999999999999987664
Q ss_pred CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC-----CceeeeeccC-----CCCCcceeeEEeCCCcE
Q 026679 89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-----GEKRCGFSLE-----PSPNTNTEATFTPDGQY 158 (235)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~~-----~~~~~i~~~~~~~~~~~ 158 (235)
.-....|.+.+.+++.+||+..+++++.|.+|++||..- +...+.+.++ .-+..|.|+.+||||++
T Consensus 447 ----~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 447 ----VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred ----hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 444558999999999999999999999999999999742 2111111111 12256999999999999
Q ss_pred EEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679 159 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 219 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~ 219 (235)
|+++-.|.+++||-+.+.+....+.+|.-||.||..+||+..+++|+ .+++||-++-+...
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH 585 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH 585 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh
Confidence 99999999999999999999999999999999999999999999998 88999999876544
No 83
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=3.3e-29 Score=190.87 Aligned_cols=192 Identities=20% Similarity=0.297 Sum_probs=175.3
Q ss_pred hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccC
Q 026679 8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRS 85 (235)
Q Consensus 8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~ 85 (235)
..|.+|+.+|.++.|+++..+|++|+.+|+|++||++..+.++++.+|..++ +.|+|-+.+++.|+.|+.+.+||++.
T Consensus 64 ~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk 143 (825)
T KOG0267|consen 64 TSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK 143 (825)
T ss_pred heeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc
Confidence 3578999999999999999999999999999999999999999998887655 89999999999999999999999997
Q ss_pred CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679 86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 165 (235)
Q Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (235)
..+ .+...+|...+..+.|+|+|++++.+++|..+++||+..|+....|.. |.+.+..+.|+|..-+++.|+.|
T Consensus 144 ~Gc----~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d 217 (825)
T KOG0267|consen 144 KGC----SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSD 217 (825)
T ss_pred cCc----eeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc--ccccccccccCchhhhhccCCCC
Confidence 655 666777999999999999999999999999999999999998887664 44668899999999999999999
Q ss_pred CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679 166 GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205 (235)
Q Consensus 166 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 205 (235)
+++++||+++.+.+.........|.+..|+|++..+.+|.
T Consensus 218 ~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 218 RTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred ceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCc
Confidence 9999999999998888877788999999999999999987
No 84
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.4e-27 Score=187.79 Aligned_cols=210 Identities=16% Similarity=0.225 Sum_probs=172.3
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCc------------------ceeeeeeeccCCce--EEEcC
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV------------------NACQGILRLRGRPT--VAFDQ 64 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~------------------~~~~~~~~~~~~~~--~~~~~ 64 (235)
+.+.+...|.+.|+|+.|+|||++||+||.|+.|.||.... .+....+.+|...+ ++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 45666788999999999999999999999999999998762 13455667777555 99999
Q ss_pred CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee-------
Q 026679 65 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG------- 137 (235)
Q Consensus 65 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~------- 137 (235)
++.+|++++.|++|.+|+..+.+. ...+.+|.+.|..+.|.|-|++|++-+.|++|++|+..+....+.
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~----~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~ 215 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFEL----LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE 215 (942)
T ss_pred CccEEEEecccceEEEEcccccee----eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh
Confidence 999999999999999999999864 677889999999999999999999999999999999654322111
Q ss_pred -------------------------------------------eccCCCCCcceeeEEeCC-----Cc------------
Q 026679 138 -------------------------------------------FSLEPSPNTNTEATFTPD-----GQ------------ 157 (235)
Q Consensus 138 -------------------------------------------~~~~~~~~~i~~~~~~~~-----~~------------ 157 (235)
..+-+|..++.++.|+|. .+
T Consensus 216 ~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~ 295 (942)
T KOG0973|consen 216 SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYC 295 (942)
T ss_pred CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceE
Confidence 113355678888999872 11
Q ss_pred EEEEeCCCCcEEEEEcCCCceeeeecC-CCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679 158 YVVSGSGDGTLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 158 ~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~ 218 (235)
.+|+|+.|++|.||.....+++..... ....|..++|+|||..|.+++ |+|.+..++...+
T Consensus 296 i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 296 IAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred EEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 578999999999999988887765532 346899999999999999998 9999999976543
No 85
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.6e-26 Score=154.53 Aligned_cols=204 Identities=16% Similarity=0.255 Sum_probs=155.8
Q ss_pred hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcc------------------------------------------
Q 026679 9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN------------------------------------------ 46 (235)
Q Consensus 9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~------------------------------------------ 46 (235)
.-+.|.+.|.|.+|+|+|+++++|+.|.+|++.-++..
T Consensus 84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 34678999999999999999999999999998754321
Q ss_pred ----------eeeeeeeccCCceE-EEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeec---CCCcceeEEEEccCC
Q 026679 47 ----------ACQGILRLRGRPTV-AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG---GDTAEVCDIKFSNDG 112 (235)
Q Consensus 47 ----------~~~~~~~~~~~~~~-~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~ 112 (235)
+..+.+.+|...++ -++.++-++++|+.|.+|++||++-.......-.... -..+.|.+++..|.|
T Consensus 164 ~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg 243 (350)
T KOG0641|consen 164 KIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG 243 (350)
T ss_pred eEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc
Confidence 11111222233333 3456788999999999999999986543111111111 123679999999999
Q ss_pred CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCC----ceeeeecCCCcc
Q 026679 113 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR----NEVACWNGNIGV 188 (235)
Q Consensus 113 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~~~ 188 (235)
++|++|-.|....+||++.++.++.+. +|...|.++.|+|...|+++++.|..|++-|+... -++.....|...
T Consensus 244 rll~sg~~dssc~lydirg~r~iq~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk 321 (350)
T KOG0641|consen 244 RLLASGHADSSCMLYDIRGGRMIQRFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK 321 (350)
T ss_pred ceeeeccCCCceEEEEeeCCceeeeeC--CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc
Confidence 999999999999999999999988665 55567999999999999999999999999998532 223344568888
Q ss_pred eeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679 189 VACLKWAPRRAMFVAAS--SVLSFWIPN 214 (235)
Q Consensus 189 v~~~~~~~~~~~l~~~~--~~i~iw~~~ 214 (235)
+..+.|+|..-.+++.+ .+..+|-++
T Consensus 322 ~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 322 AIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEEecCccceeeeccCcceEEEeccC
Confidence 89999999887777776 789999765
No 86
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=2.2e-27 Score=172.00 Aligned_cols=204 Identities=15% Similarity=0.248 Sum_probs=161.8
Q ss_pred ccccceeEEEeecCC-CeeEEEeccceEEEEecCcce----------eeeeeeccCC--ceEEEcCC-CCEEEEEecCCe
Q 026679 12 GHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNA----------CQGILRLRGR--PTVAFDQQ-GLVFAVAMEAGA 77 (235)
Q Consensus 12 ~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~----------~~~~~~~~~~--~~~~~~~~-~~~l~~~~~dg~ 77 (235)
-|.+.|+.+.+-|.. ..+|+.+..+.+.|||..... +...+.+|.. ..++|++. .-.+++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 488999999999976 567788889999999986432 1124555654 33888884 457999999999
Q ss_pred EEEEeccCCCCC---CceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEe
Q 026679 78 IKLFDSRSYDKG---PFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 153 (235)
Q Consensus 78 v~i~d~~~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ 153 (235)
|.+||+...... ......+.+|...|..++|++ +...|++++.|+.+.+||+|++..........|...+.+++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 999999876542 234566789999999999999 5667888999999999999964333344556777889999999
Q ss_pred C-CCcEEEEeCCCCcEEEEEcCCC-ceeeeecCCCcceeEEEeecCCCE-EEEcc--cceEEeeCCC
Q 026679 154 P-DGQYVVSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAM-FVAAS--SVLSFWIPNP 215 (235)
Q Consensus 154 ~-~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~--~~i~iw~~~~ 215 (235)
| ++..||+|+.|++|++||+|+. +++.++.+|...|.++.|+|.... |++++ +.+.|||+..
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 9 5667789999999999999975 467889999999999999997655 45554 7799999964
No 87
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=161.96 Aligned_cols=207 Identities=17% Similarity=0.278 Sum_probs=158.7
Q ss_pred hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCccee-----e-eeeeccCCceEEEcCCCCEEEEEec-CCeE
Q 026679 6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC-----Q-GILRLRGRPTVAFDQQGLVFAVAME-AGAI 78 (235)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-----~-~~~~~~~~~~~~~~~~~~~l~~~~~-dg~v 78 (235)
.+..|++|.+.|++++|+.||+.|+|++.|++|++|+++.... + ..++......++|.||-+-+++... ...+
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 3567899999999999999999999999999999999976421 1 1222333344999999876665554 5578
Q ss_pred EEEeccCCCCCCc--eeE------eecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceee
Q 026679 79 KLFDSRSYDKGPF--DTF------LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA 150 (235)
Q Consensus 79 ~i~d~~~~~~~~~--~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~ 150 (235)
++|.+...+.+.. ... ....|.-.+..+-....+.++++++.|..|.+|+++ |+.+..+...... -...
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~--n~~a 234 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS--NYDA 234 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc--ccce
Confidence 8887654332211 111 112345566677777788999999999999999998 8877766554433 5568
Q ss_pred EEeCCCcEEEEeCCCCcEEEEEcC---CC-----ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679 151 TFTPDGQYVVSGSGDGTLHAWNIN---TR-----NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 151 ~~~~~~~~l~~~~~dg~i~v~d~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~ 215 (235)
+.||+|+++++++---.++||..- .| ..+..+++|.+.|..++|+++.+.+++.+ |..+|||.+-
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 999999999999998889999863 33 24567899999999999999999999998 8899999864
No 88
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.7e-27 Score=158.25 Aligned_cols=210 Identities=18% Similarity=0.244 Sum_probs=165.8
Q ss_pred hhhhhhcccccceeEEEeec--CCCeeEEEeccceEEEEecCcceeee--eeeccC--CceEEEcC--CCCEEEEEecCC
Q 026679 5 RILRYFKGHKERVISLCMSP--VNDSFMSGSLDHSVRIWDLRVNACQG--ILRLRG--RPTVAFDQ--QGLVFAVAMEAG 76 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~--~~~~~~~~--~~~~l~~~~~dg 76 (235)
+++.+|.||+++|+.++|.. -|.+||+++.||.|.||.-++++-.+ ....|. .++++|.| -|-.|++++.||
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG 126 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG 126 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCC
Confidence 57889999999999999965 68999999999999999988774322 233343 44588877 567899999999
Q ss_pred eEEEEeccCCCCCCceeEeecCCCcceeEEEEccC---C-----------CeEEEecCCCcEEEEEcCCCceeeeeccCC
Q 026679 77 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---G-----------KSMLLTTTNNNIYVLDAYGGEKRCGFSLEP 142 (235)
Q Consensus 77 ~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 142 (235)
.|.+.+.+... ..........|.-.|++++|.|. | +.|++|+.|..|++|+..+++-.....+..
T Consensus 127 ~vsvl~~~~~g-~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~ 205 (299)
T KOG1332|consen 127 KVSVLTYDSSG-GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG 205 (299)
T ss_pred cEEEEEEcCCC-CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh
Confidence 99999988762 22223445678889999999985 4 569999999999999998886666666788
Q ss_pred CCCcceeeEEeCCC----cEEEEeCCCCcEEEEEcCCCc--e-eeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679 143 SPNTNTEATFTPDG----QYVVSGSGDGTLHAWNINTRN--E-VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 213 (235)
Q Consensus 143 ~~~~i~~~~~~~~~----~~l~~~~~dg~i~v~d~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~ 213 (235)
|...++.++|.|.- .+|+++++||++.||..+... . ...++.....++.+.|++.|+.|+.++ +.+++|.-
T Consensus 206 H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 206 HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred cchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 99999999999963 579999999999999876221 1 122233456899999999999999987 55999976
Q ss_pred CC
Q 026679 214 NP 215 (235)
Q Consensus 214 ~~ 215 (235)
+.
T Consensus 286 ~~ 287 (299)
T KOG1332|consen 286 NV 287 (299)
T ss_pred CC
Confidence 53
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.8e-27 Score=178.58 Aligned_cols=208 Identities=15% Similarity=0.237 Sum_probs=178.6
Q ss_pred hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcc--eeeeeeeccCC--ceEEE-cCCCCEEEEEecCCeEEE
Q 026679 6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN--ACQGILRLRGR--PTVAF-DQQGLVFAVAMEAGAIKL 80 (235)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~--~~~~~-~~~~~~l~~~~~dg~v~i 80 (235)
.+..++.|++.|+.+....+++.|+++|.|-+|++|+...+ -++.++..|.. .++++ .++..++++|+-|+.|.+
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~Ifl 144 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFL 144 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEE
Confidence 47788999999999999999999999999999999999877 57777777774 44777 678899999999999999
Q ss_pred EeccCCCC------CCceeEeec-CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEe
Q 026679 81 FDSRSYDK------GPFDTFLVG-GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 153 (235)
Q Consensus 81 ~d~~~~~~------~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ 153 (235)
||++++.. .......+. ++..+|++++.++.|..++.|+..+.+++||.++++.+..+. +|...|..+..+
T Consensus 145 WDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr--GHTdNVr~ll~~ 222 (735)
T KOG0308|consen 145 WDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR--GHTDNVRVLLVN 222 (735)
T ss_pred EEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee--ccccceEEEEEc
Confidence 99997632 111122233 778899999999999999999999999999999998776555 666779999999
Q ss_pred CCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679 154 PDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 154 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~ 215 (235)
+||..+++++.||+|++||+...+++.++..|...|+++..+|+-..+.+|+ +.|..=++..
T Consensus 223 dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 223 DDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred CCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 9999999999999999999999999999999999999999999999999999 5566656655
No 90
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.8e-27 Score=182.71 Aligned_cols=198 Identities=19% Similarity=0.346 Sum_probs=163.8
Q ss_pred hhhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcC-CCCEEEEEecCCeEE
Q 026679 4 NRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIK 79 (235)
Q Consensus 4 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~ 79 (235)
++++..|..|+..++++.|++.. .+|++||.||+|++||++......++......+ +.|+| .+..|+++...|.++
T Consensus 123 nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lq 202 (839)
T KOG0269|consen 123 NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQ 202 (839)
T ss_pred chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEE
Confidence 67788999999999999999854 789999999999999999988887777655444 99999 678999999999999
Q ss_pred EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE-
Q 026679 80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY- 158 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~- 158 (235)
+||++.... ...++..|.++|.++.|+|++.+||+|+.|+.|++||+.+++.......+.- .++.++.|-|..++
T Consensus 203 lWDlRqp~r---~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-apv~rVkWRP~~~~h 278 (839)
T KOG0269|consen 203 LWDLRQPDR---CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-APVGRVKWRPARSYH 278 (839)
T ss_pred EeeccCchh---HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec-ceeeeeeeccCccch
Confidence 999998653 4567789999999999999999999999999999999987766555444432 67999999997665
Q ss_pred EEEeCC--CCcEEEEEcCCC-ceeeeecCCCcceeEEEeec-CCCEEEEcc
Q 026679 159 VVSGSG--DGTLHAWNINTR-NEVACWNGNIGVVACLKWAP-RRAMFVAAS 205 (235)
Q Consensus 159 l~~~~~--dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 205 (235)
|++++. |-.|+|||++.. -+..++..|...++.++|.. |...+.+++
T Consensus 279 LAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~s 329 (839)
T KOG0269|consen 279 LATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCS 329 (839)
T ss_pred hhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeec
Confidence 555543 778999999754 34567888999999999976 455666666
No 91
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.8e-27 Score=182.67 Aligned_cols=196 Identities=17% Similarity=0.336 Sum_probs=157.0
Q ss_pred eeEEEeec-CCCeeEEEeccceEEEEecCc---ceeeeeeeccCCce--EEEcC-CCCEEEEEecCCeEEEEeccCCCCC
Q 026679 17 VISLCMSP-VNDSFMSGSLDHSVRIWDLRV---NACQGILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKG 89 (235)
Q Consensus 17 v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~---~~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~ 89 (235)
+..++|.. +.++|||++..|.|.+||+.. .+.+..+..|...+ +.|++ ...+|++|+.||.|++||++..+.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S- 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS- 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-
Confidence 34567764 357899999999999999976 45556677776544 89988 567899999999999999998775
Q ss_pred CceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcE
Q 026679 90 PFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL 168 (235)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (235)
.....+....|+.++|+| .+..++++.+.|.+.+||+|.... ..+++..|.++|.++.|+|++.+||+|+.|+.|
T Consensus 169 ---~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v 244 (839)
T KOG0269|consen 169 ---KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV 244 (839)
T ss_pred ---cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh-HHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence 444556778899999999 678899999999999999997653 344667788999999999999999999999999
Q ss_pred EEEEcCCCce--eeeecCCCcceeEEEeecCCCE-EEEcc----cceEEeeCCCCCC
Q 026679 169 HAWNINTRNE--VACWNGNIGVVACLKWAPRRAM-FVAAS----SVLSFWIPNPSSN 218 (235)
Q Consensus 169 ~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~-l~~~~----~~i~iw~~~~~~~ 218 (235)
+|||..+.+. +.++. ...++.++.|-|...+ |++++ -.|+|||+...-+
T Consensus 245 kiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI 300 (839)
T KOG0269|consen 245 KIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI 300 (839)
T ss_pred EEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccc
Confidence 9999976554 33333 3468999999998765 45554 4499999976544
No 92
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.9e-26 Score=178.96 Aligned_cols=207 Identities=19% Similarity=0.347 Sum_probs=174.4
Q ss_pred chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEE
Q 026679 2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLF 81 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~ 81 (235)
.+|++...+.+|.+.|.++...+ ..+++|+.|.+|++|+++++..+..+.+|...+-+..-++.++++|+.|++|++|
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW 356 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVW 356 (537)
T ss_pred CCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEE
Confidence 57899999999999999998764 6788899999999999999999999998887776666669999999999999999
Q ss_pred eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC-ceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679 82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDGQYVV 160 (235)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (235)
|+.+++. ...+.+|...|.++.+.+. ..+++|+.|+.|++||+++. +++..+. .|...+..+. ..+++|+
T Consensus 357 ~~~~~~c----l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~--~h~~~v~~l~--~~~~~Lv 427 (537)
T KOG0274|consen 357 DPRTGKC----LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ--GHTSLVSSLL--LRDNFLV 427 (537)
T ss_pred Ehhhcee----eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc--CCcccccccc--cccceeE
Confidence 9998776 7788899999999988765 78999999999999999999 7666554 4444454444 4678999
Q ss_pred EeCCCCcEEEEEcCCCceeeeecC-CCcceeEEEeecCCCEEEEcc-cceEEeeCCCCCCCC
Q 026679 161 SGSGDGTLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNST 220 (235)
Q Consensus 161 ~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~~~~ 220 (235)
+++.|+.|++||..+++++..+.+ |.+.|..+++. +...++++. +.+++||+++.+...
T Consensus 428 s~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 428 SSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred eccccccEEEeecccCceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCchhh
Confidence 999999999999999999999998 66888888876 334444444 899999998765543
No 93
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=1.6e-26 Score=164.43 Aligned_cols=206 Identities=17% Similarity=0.243 Sum_probs=160.2
Q ss_pred cccccceeEEEeecCC--CeeEEEeccceEEEEecCc----------------ceeeeeeeccCCc--eEEEcC-CCCEE
Q 026679 11 KGHKERVISLCMSPVN--DSFMSGSLDHSVRIWDLRV----------------NACQGILRLRGRP--TVAFDQ-QGLVF 69 (235)
Q Consensus 11 ~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~----------------~~~~~~~~~~~~~--~~~~~~-~~~~l 69 (235)
-+|.+.++.+..++-+ .+.++-+..|.|+|||+.. .+++.++..|... .++|+| ....|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3577788887777754 4566777889999999752 2344555555533 389999 33458
Q ss_pred EEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcce
Q 026679 70 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT 148 (235)
Q Consensus 70 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~ 148 (235)
++|.--+.|++|...++.. ......+.+|...|-.++|+|. ...|++++.||+|++||+|.+.....+....|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W-~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSW-KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCce-eecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 8888889999999988553 3334455679999999999995 4578889999999999999985544445577888899
Q ss_pred eeEEeCCCcEEEEeCCCCcEEEEEcCC---CceeeeecCCCcceeEEEeecCCC-EEEEcc--cceEEeeCCCCC
Q 026679 149 EATFTPDGQYVVSGSGDGTLHAWNINT---RNEVACWNGNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 149 ~~~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~~i~iw~~~~~~ 217 (235)
.+.|+..-.+||+|+.||+++|||+++ ++++.+++.|..+|+++.|+|... .|++++ ..+.+||+....
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 999999888999999999999999985 677899999999999999999543 333333 669999997543
No 94
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.4e-27 Score=163.01 Aligned_cols=223 Identities=21% Similarity=0.338 Sum_probs=183.5
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc--eEEEcCCCCEEEEEecCCeEEEEe
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFD 82 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~v~i~d 82 (235)
++++.|.||.+.|+.++.......+.+++.|.+.+||.++++.++..+.+|... ++.|++.+.++++++.|++-.||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 578899999999999998877788999999999999999999999999998754 599999999999999999999996
Q ss_pred c------cCCC------------------------------CCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEE
Q 026679 83 S------RSYD------------------------------KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 126 (235)
Q Consensus 83 ~------~~~~------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 126 (235)
. .... ........+.+|...|.+..|-..|+.+++++.|.+..+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 2 1100 001123456688899999999999999999999999999
Q ss_pred EEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC-CceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679 127 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRAMFVAAS 205 (235)
Q Consensus 127 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 205 (235)
||+.+++.+..+..+.+ ..+.++-+|..+++++.+.|.+.++||.+. -..+..|++|...|++..|..+.+. ++|+
T Consensus 299 wDVEtge~v~~LtGHd~--ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~v-VSgS 375 (481)
T KOG0300|consen 299 WDVETGEVVNILTGHDS--ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRV-VSGS 375 (481)
T ss_pred eeeccCceeccccCcch--hccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCce-eecC
Confidence 99999999987776654 488899999999999999999999999984 3456788999999999999987655 4555
Q ss_pred --cceEEeeCCCC--CCCCCCCCCCCCCc
Q 026679 206 --SVLSFWIPNPS--SNSTDESTDPQATV 230 (235)
Q Consensus 206 --~~i~iw~~~~~--~~~~~~~~~~~~~i 230 (235)
.++++||++.. .+.++....|.+++
T Consensus 376 DDrTvKvWdLrNMRsplATIRtdS~~NRv 404 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIRTDSPANRV 404 (481)
T ss_pred CCceEEEeeeccccCcceeeecCCcccee
Confidence 78999999753 33444444444443
No 95
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=3.9e-28 Score=185.10 Aligned_cols=203 Identities=20% Similarity=0.357 Sum_probs=182.5
Q ss_pred hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccC
Q 026679 8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRS 85 (235)
Q Consensus 8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~ 85 (235)
+.+-.|...|.++..-..++.+++|+.|..+-+|.+.....+..+.+|...+ +.|+++..++++|..+|+|++||+..
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 4556799999999987678899999999999999998887777888887655 99999999999999999999999997
Q ss_pred CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679 86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 165 (235)
Q Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (235)
... ...+.+|...+.++.|+|-+.+.+.++.|+.+.+||.+...+.+.+.. |...+..+.|+|+|++++.+++|
T Consensus 102 Ak~----vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s--~~~vv~~l~lsP~Gr~v~~g~ed 175 (825)
T KOG0267|consen 102 AKI----VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS--HTRVVDVLRLSPDGRWVASGGED 175 (825)
T ss_pred hhh----hhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC--CcceeEEEeecCCCceeeccCCc
Confidence 664 557889999999999999999999999999999999998777776654 66778999999999999999999
Q ss_pred CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679 166 GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 166 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~ 216 (235)
..+++||+..|+....|+.|.+.+..+.|+|..-+++.|+ +++++||+++-
T Consensus 176 ~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 176 NTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred ceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee
Confidence 9999999999999999999999999999999999999998 78999999853
No 96
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.2e-26 Score=162.79 Aligned_cols=209 Identities=21% Similarity=0.349 Sum_probs=182.9
Q ss_pred Cchhhhhhhhc-ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCe
Q 026679 1 MYDNRILRYFK-GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGA 77 (235)
Q Consensus 1 l~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~ 77 (235)
+++|++++.|. +|+..|+|+.|+.|+..+++++.|.++++--++.|++++.+++|...+ ..|.++|..+++++.||+
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt 371 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT 371 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence 46899999998 899999999999999999999999999999999999999999998655 899999999999999999
Q ss_pred EEEEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccC-CCCCcceeeEEeCC
Q 026679 78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE-PSPNTNTEATFTPD 155 (235)
Q Consensus 78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~ 155 (235)
|++|+..+.++ ...+...+...+|.++..-| +...++++...+++++.++ .|+.+..+... ...+...+...+|.
T Consensus 372 vkvW~~KtteC--~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 372 VKVWHGKTTEC--LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPK 448 (508)
T ss_pred EEEecCcchhh--hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCC
Confidence 99999988765 33445556677888888777 5678999999999999997 46666666543 23355677889999
Q ss_pred CcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEee
Q 026679 156 GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 212 (235)
Q Consensus 156 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~ 212 (235)
|.++++.++|+.++.|...+|+...++..|+..+..++-+|..+.+++-+ |.+++|.
T Consensus 449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99999999999999999999999999999999999999999999999988 7799995
No 97
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.1e-25 Score=155.95 Aligned_cols=202 Identities=17% Similarity=0.235 Sum_probs=154.9
Q ss_pred ccccceeEEEeec-CCCeeEEEeccceEEEEecCc-ceeee-eeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCC
Q 026679 12 GHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRV-NACQG-ILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSY 86 (235)
Q Consensus 12 ~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~-~~~~~-~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~ 86 (235)
..++.|.+++||| ...+++++|+|++||+|+++. +.... ....+..++ ++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3567899999999 456677999999999999976 33332 233344444 899999999999999999999999997
Q ss_pred CCCCceeEeecCCCcceeEEEEccCCC--eEEEecCCCcEEEEEcCCCceeeeeccCCC---------------------
Q 026679 87 DKGPFDTFLVGGDTAEVCDIKFSNDGK--SMLLTTTNNNIYVLDAYGGEKRCGFSLEPS--------------------- 143 (235)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--------------------- 143 (235)
+ ......|..+|..+.|-+... .|++|+.|++|+.||.|...++..+.++..
T Consensus 105 Q-----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~ 179 (347)
T KOG0647|consen 105 Q-----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIA 179 (347)
T ss_pred C-----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEE
Confidence 6 466778999999999987655 799999999999999998766554433211
Q ss_pred ------------------CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCC--ceeeeecCCC---------cceeEEEe
Q 026679 144 ------------------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR--NEVACWNGNI---------GVVACLKW 194 (235)
Q Consensus 144 ------------------~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~---------~~v~~~~~ 194 (235)
+-.+++++..++....+.|+-+|.+.+..+..+ +.-..++.|. ..|.+|+|
T Consensus 180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence 134567777777777788888888888887765 3344555554 25788999
Q ss_pred ecCCCEEEEcc--cceEEeeCCCCCC
Q 026679 195 APRRAMFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 195 ~~~~~~l~~~~--~~i~iw~~~~~~~ 218 (235)
+|.-..|++++ |.+.+||-+....
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~k 285 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTK 285 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhh
Confidence 99877777776 8899999875443
No 98
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=163.21 Aligned_cols=201 Identities=12% Similarity=0.253 Sum_probs=171.6
Q ss_pred ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC--ceEEEcCCCCEEEEEecCCeEEEEeccCC-----
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLFDSRSY----- 86 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~v~i~d~~~~----- 86 (235)
.++|.+++-+|+|.+|+.|...|.+++|.+.+|..+..+..|-. .++.|+-||.+|++|+.||.|.+|++...
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 47899999999999999998999999999999999999888764 45999999999999999999999987431
Q ss_pred CCCCceeEeecCCCcceeEEEEccC--CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679 87 DKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 164 (235)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (235)
...+.....+..|.-+|+++...+. ..++++++.|.++++||+..+..+..+..+ ..+.+++.+|-++.+++|++
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp---~si~av~lDpae~~~yiGt~ 237 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP---SSIKAVALDPAERVVYIGTE 237 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC---CcceeEEEcccccEEEecCC
Confidence 1123346677789999999988764 357999999999999999999988877665 55899999999999999999
Q ss_pred CCcEEEEEcCCC----------------ceeeeecCCCc--ceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679 165 DGTLHAWNINTR----------------NEVACWNGNIG--VVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 165 dg~i~v~d~~~~----------------~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~ 217 (235)
+|.|.+.++... ..+..+.+|.+ .|+|++.+-||..|++|+ |.+.|||+.+.+
T Consensus 238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 999999887432 23455678877 999999999999999998 889999997654
No 99
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.6e-26 Score=163.71 Aligned_cols=207 Identities=16% Similarity=0.269 Sum_probs=164.7
Q ss_pred hhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679 6 ILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD 82 (235)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d 82 (235)
++..|.||.+.|.|++=+|.. ..+++|+.||.|++||+....+...++.|...+ +++.. ..+++++.|.+|+.|-
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 456789999999999999976 779999999999999999999999999998666 66554 6788888888888887
Q ss_pred ccCCCC------------------------C----------CceeEeecCCCcceeEEEEccCCC-eEEEecCCCcEEEE
Q 026679 83 SRSYDK------------------------G----------PFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVL 127 (235)
Q Consensus 83 ~~~~~~------------------------~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~ 127 (235)
+..... + ......+.-....+.++.|+|... .|+++..|+.|.+|
T Consensus 136 ~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLy 215 (433)
T KOG0268|consen 136 IDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLY 215 (433)
T ss_pred ccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEE
Confidence 433100 0 000111112234577888888544 56666699999999
Q ss_pred EcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCC-ceeeeecCCCcceeEEEeecCCCEEEEcc-
Q 026679 128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAMFVAAS- 205 (235)
Q Consensus 128 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 205 (235)
|++.+++++...+... -+.++|+|++--+.+|++|..++.||++.. +++....+|.+.|.+++|+|.|+-+++|+
T Consensus 216 D~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgsy 292 (433)
T KOG0268|consen 216 DLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSY 292 (433)
T ss_pred ecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccc
Confidence 9999999887776644 355899998888899999999999999864 56778889999999999999999999999
Q ss_pred -cceEEeeCCCCC
Q 026679 206 -SVLSFWIPNPSS 217 (235)
Q Consensus 206 -~~i~iw~~~~~~ 217 (235)
.+|+||..+.+.
T Consensus 293 DksIRIf~~~~~~ 305 (433)
T KOG0268|consen 293 DKSIRIFPVNHGH 305 (433)
T ss_pred cceEEEeecCCCc
Confidence 889999987553
No 100
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=8.4e-26 Score=164.24 Aligned_cols=198 Identities=16% Similarity=0.256 Sum_probs=168.3
Q ss_pred cccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCC
Q 026679 11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDK 88 (235)
Q Consensus 11 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 88 (235)
++|...|.+++.++||++|++|+.|..|.||+.++.+.++.+.+|...+ ++|-.....+++++.|+.+++|++.....
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 4899999999999999999999999999999999999999999988666 78888888899999999999999987664
Q ss_pred CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcE
Q 026679 89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL 168 (235)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (235)
...+.+|+..|..+....-++.+-+|+.|+++++|++.....+ .+ .++.+.+.|++|-.+ ..+++|+.+|.|
T Consensus 279 ----vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-if--rg~~~sidcv~~In~-~HfvsGSdnG~I 350 (479)
T KOG0299|consen 279 ----VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IF--RGGEGSIDCVAFIND-EHFVSGSDNGSI 350 (479)
T ss_pred ----HHHHhCCccceeeechhcccceEEeccccceeEEEecccccee-ee--eCCCCCeeeEEEecc-cceeeccCCceE
Confidence 5667899999999988888887777889999999999544332 23 344567899998755 578899999999
Q ss_pred EEEEcCCCceeeeec-CC-----------CcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679 169 HAWNINTRNEVACWN-GN-----------IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 169 ~v~d~~~~~~~~~~~-~~-----------~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~ 216 (235)
.+|++...+++++.. .| ...|++++..|...++++|+ |.+++|.++.+
T Consensus 351 aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 351 ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred EEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 999999888877653 22 12789999999999999998 88999999766
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=5.5e-26 Score=163.27 Aligned_cols=211 Identities=16% Similarity=0.180 Sum_probs=174.0
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD 82 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d 82 (235)
.++.+|.|-.++|+++.|.+++.++++++.|+.+++|++...+...++.+|...+ +.|......+++|+.|.++++||
T Consensus 210 ~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WD 289 (459)
T KOG0288|consen 210 ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWD 289 (459)
T ss_pred hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhh
Confidence 4677888888999999999999999999999999999999999999999998766 55555555599999999999999
Q ss_pred ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679 83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 162 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (235)
+....... ..-..+.+..+..+ ...++++..|+.|++||.++..+....... +.|+++..++++..|+++
T Consensus 290 l~k~~C~k-----t~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g---g~vtSl~ls~~g~~lLss 359 (459)
T KOG0288|consen 290 LQKAYCSK-----TVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG---GRVTSLDLSMDGLELLSS 359 (459)
T ss_pred hhhhheec-----cccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecC---cceeeEeeccCCeEEeee
Confidence 98754311 11122455566655 456788889999999999999988877765 369999999999999999
Q ss_pred CCCCcEEEEEcCCCceeeeecCC----CcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCCCCCCCC
Q 026679 163 SGDGTLHAWNINTRNEVACWNGN----IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDESTD 225 (235)
Q Consensus 163 ~~dg~i~v~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~~~~~~ 225 (235)
+.|..+.+.|+++.+....+... ....+.+.|+|++.|+++|+ |.++||++.++++....+..
T Consensus 360 sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s 428 (459)
T KOG0288|consen 360 SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS 428 (459)
T ss_pred cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC
Confidence 99999999999998887777532 23588999999999999998 88999999988876655433
No 102
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.3e-26 Score=152.27 Aligned_cols=202 Identities=16% Similarity=0.282 Sum_probs=165.7
Q ss_pred cccccceeEEEeecCCCeeEEEeccceEEEEecCcc---eeeeeeeccCCce--EEEcC--CCCEEEEEecCCeEEEEec
Q 026679 11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN---ACQGILRLRGRPT--VAFDQ--QGLVFAVAMEAGAIKLFDS 83 (235)
Q Consensus 11 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~~--~~~~~--~~~~l~~~~~dg~v~i~d~ 83 (235)
..|++.|..+...--|++|||++.|++|+|+..+.+ +.+..+.+|..++ ++|.. -|.+|++++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 468999998888888999999999999999999765 4677888999887 66654 8999999999999999998
Q ss_pred cCCCCCCceeEeecCCCcceeEEEEccC--CCeEEEecCCCcEEEEEcCCC-ceeeeeccCCCCCcceeeEEeCC---C-
Q 026679 84 RSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPD---G- 156 (235)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~i~~~~~~~~---~- 156 (235)
.++.-.. ......|...|++++|.|. |-.|++++.||.|.+.+.+.. ..........|+-.+++++|.|. |
T Consensus 88 ~~g~w~k--~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 88 ENGRWTK--AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred CCCchhh--hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 8764322 3445678899999999995 567899999999999998765 33333334567777999999986 4
Q ss_pred ----------cEEEEeCCCCcEEEEEcCCCc--eeeeecCCCcceeEEEeecCC----CEEEEcc--cceEEeeCC
Q 026679 157 ----------QYVVSGSGDGTLHAWNINTRN--EVACWNGNIGVVACLKWAPRR----AMFVAAS--SVLSFWIPN 214 (235)
Q Consensus 157 ----------~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~--~~i~iw~~~ 214 (235)
+.|++|+.|..|+||+..+++ ....+.+|...|+.++|.|.- .+|++++ +++.||..+
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 569999999999999998753 345588999999999999953 5788888 889999876
No 103
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=157.42 Aligned_cols=217 Identities=15% Similarity=0.167 Sum_probs=175.2
Q ss_pred CchhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecC------c-----------------------------
Q 026679 1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR------V----------------------------- 45 (235)
Q Consensus 1 l~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~------~----------------------------- 45 (235)
|++|+++..+.||.+.|++++|++.+.++++++.|++-.||... .
T Consensus 177 ~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~s 256 (481)
T KOG0300|consen 177 LESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKS 256 (481)
T ss_pred eccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccccc
Confidence 57899999999999999999999999999999999999999721 0
Q ss_pred -c----eeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEe
Q 026679 46 -N----ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 118 (235)
Q Consensus 46 -~----~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 118 (235)
+ .++..+.+|...+ ..|-..|+.+++++.|.+-.+||+++++. ...+.+|....+.++-+|..+++++.
T Consensus 257 D~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~----v~~LtGHd~ELtHcstHptQrLVvTs 332 (481)
T KOG0300|consen 257 DGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEV----VNILTGHDSELTHCSTHPTQRLVVTS 332 (481)
T ss_pred CCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCce----eccccCcchhccccccCCcceEEEEe
Confidence 0 0112223333333 44666889999999999999999999886 67788999999999999999999999
Q ss_pred cCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCce-eeeecCCCcceeEEEeecC
Q 026679 119 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAPR 197 (235)
Q Consensus 119 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~ 197 (235)
+.|.+.++||++.. ....-.+.+|...|+++.|..+. .+++|+.|.+|+|||+++.+. +.++. ..+++..++.+..
T Consensus 333 SrDtTFRLWDFRea-I~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g 409 (481)
T KOG0300|consen 333 SRDTTFRLWDFREA-IQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKG 409 (481)
T ss_pred ccCceeEeccchhh-cceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecC
Confidence 99999999999843 22333445677789999998765 578999999999999998654 55554 5678999999988
Q ss_pred CCEEEEcc--cceEEeeCCCCCCCCCCCC
Q 026679 198 RAMFVAAS--SVLSFWIPNPSSNSTDEST 224 (235)
Q Consensus 198 ~~~l~~~~--~~i~iw~~~~~~~~~~~~~ 224 (235)
+..|+.-- ..+++||+++..+..++-.
T Consensus 410 ~~iIAiPhDNRqvRlfDlnG~RlaRlPrt 438 (481)
T KOG0300|consen 410 HPIIAIPHDNRQVRLFDLNGNRLARLPRT 438 (481)
T ss_pred CceEEeccCCceEEEEecCCCccccCCcc
Confidence 87887775 6699999999888777643
No 104
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.3e-25 Score=161.42 Aligned_cols=208 Identities=16% Similarity=0.179 Sum_probs=164.8
Q ss_pred CchhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecC---------cceeeeeeeccCCce--EEE--cCCCC
Q 026679 1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR---------VNACQGILRLRGRPT--VAF--DQQGL 67 (235)
Q Consensus 1 l~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~---------~~~~~~~~~~~~~~~--~~~--~~~~~ 67 (235)
|.+|+++..+.+|=..|+|+.|+.||.+|+|||.||.|.+|.+. +.++...+..|..++ +.. .+...
T Consensus 110 lssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~ 189 (476)
T KOG0646|consen 110 LSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNA 189 (476)
T ss_pred eccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccc
Confidence 46899999999999999999999999999999999999999863 235667777777666 333 33457
Q ss_pred EEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc--------------
Q 026679 68 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-------------- 133 (235)
Q Consensus 68 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-------------- 133 (235)
++++++.|.++++||+..+.. ......+..+.+++.+|-++.+++|+.+|.|.+.++....
T Consensus 190 rl~TaS~D~t~k~wdlS~g~L-----Llti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~ 264 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSLGVL-----LLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEE 264 (476)
T ss_pred eEEEecCCceEEEEEecccee-----eEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccc
Confidence 899999999999999998753 2222345789999999999999999999999998875432
Q ss_pred --eeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---cce
Q 026679 134 --KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVL 208 (235)
Q Consensus 134 --~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i 208 (235)
....+..+.....|+|++++-||.+|++|+.||.++|||+.+.++++++....++|+.+.+.|-.+-.+.+. ..+
T Consensus 265 ~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~ 344 (476)
T KOG0646|consen 265 NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSL 344 (476)
T ss_pred cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccC
Confidence 122233333334899999999999999999999999999999999998886778999999977654444432 234
Q ss_pred EEeeC
Q 026679 209 SFWIP 213 (235)
Q Consensus 209 ~iw~~ 213 (235)
-.|++
T Consensus 345 ~~~~l 349 (476)
T KOG0646|consen 345 PNPHL 349 (476)
T ss_pred CchHh
Confidence 44444
No 105
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.3e-26 Score=171.76 Aligned_cols=203 Identities=15% Similarity=0.266 Sum_probs=164.7
Q ss_pred ccccee---EEEeec-CCCeeEEEeccceEEEEecCcce------eeeeeeccCCce--EEEcCCCCEEEEEecCCeEEE
Q 026679 13 HKERVI---SLCMSP-VNDSFMSGSLDHSVRIWDLRVNA------CQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKL 80 (235)
Q Consensus 13 h~~~v~---~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~------~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i 80 (235)
|...|. .+..+. .+++|+|||+||.|++|++.... ....++.|..-+ ++...+++.|++++.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444454 445544 45779999999999999986432 245556665443 677778899999999999999
Q ss_pred EeccCCCCCCceeEeecCCCcceeEEEE-ccCCCeEEEecCCCcEEEEEcCCCce--eeee------ccC-CCCCcceee
Q 026679 81 FDSRSYDKGPFDTFLVGGDTAEVCDIKF-SNDGKSMLLTTTNNNIYVLDAYGGEK--RCGF------SLE-PSPNTNTEA 150 (235)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~------~~~-~~~~~i~~~ 150 (235)
|+..... ......+..|...|.|+++ .++...+++|+-|+.|.+||+.++.. +..+ .+. ++...|.++
T Consensus 100 W~~~~~~--~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 100 WNAHKDN--TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred eecccCc--chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence 9988754 2335567789999999999 78888999999999999999997732 2211 122 556789999
Q ss_pred EEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 151 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~ 217 (235)
+.++.|..+++|+..+.|++||.++.+.+..+.+|...|..+..++||..+++++ ++|++||+....
T Consensus 178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr 246 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR 246 (735)
T ss_pred ecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc
Confidence 9999999999999999999999999999999999999999999999999999998 889999997654
No 106
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=2.5e-25 Score=176.47 Aligned_cols=202 Identities=16% Similarity=0.252 Sum_probs=161.6
Q ss_pred cccceeEEEeecCCCeeEEEe--ccceEEEEecCc------------ceeeeeeeccC--CceEEEcCCCCEEEEEecCC
Q 026679 13 HKERVISLCMSPVNDSFMSGS--LDHSVRIWDLRV------------NACQGILRLRG--RPTVAFDQQGLVFAVAMEAG 76 (235)
Q Consensus 13 h~~~v~~~~~~~~~~~l~s~~--~d~~i~vwd~~~------------~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg 76 (235)
+...|.++..+|++..++||+ .|+.++||+.+. .+.+.....|. +.|+.|+|||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 456799999999999999999 899999998642 11222333333 45688999999999999999
Q ss_pred eEEEEeccCCC----------CC----CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCC
Q 026679 77 AIKLFDSRSYD----------KG----PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP 142 (235)
Q Consensus 77 ~v~i~d~~~~~----------~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 142 (235)
.|.+|+..... .. ......+.+|...|..++|+|++.+|++++.|++|.+|+.++.+....+. .
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~--~ 169 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR--G 169 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee--c
Confidence 99999987300 00 01245567899999999999999999999999999999999997776655 4
Q ss_pred CCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC------CcceeEEEeecCCCEEEEcc------cceEE
Q 026679 143 SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN------IGVVACLKWAPRRAMFVAAS------SVLSF 210 (235)
Q Consensus 143 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~------~~i~i 210 (235)
|.+.|-.+.|.|-|+|||+-+.|++|+||++.+....+.+..+ ...+..+.|+|||.+|++.. ..+.|
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 5567999999999999999999999999998877676666544 33678999999999999984 34677
Q ss_pred eeCCCC
Q 026679 211 WIPNPS 216 (235)
Q Consensus 211 w~~~~~ 216 (235)
.+-++.
T Consensus 250 ieR~tW 255 (942)
T KOG0973|consen 250 IERGTW 255 (942)
T ss_pred EecCCc
Confidence 665443
No 107
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=169.89 Aligned_cols=201 Identities=14% Similarity=0.247 Sum_probs=164.3
Q ss_pred cccccceeEEEeecCCCeeEEEeccceEEEEecCcc-----------eeee-------------------eeecc-----
Q 026679 11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-----------ACQG-------------------ILRLR----- 55 (235)
Q Consensus 11 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-----------~~~~-------------------~~~~~----- 55 (235)
.+|+...+.++|.|+|++|++++.||.|++|+.... ..+. .++.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 368889999999999999999999999999986432 1111 11111
Q ss_pred --------CCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEE
Q 026679 56 --------GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 127 (235)
Q Consensus 56 --------~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 127 (235)
...+++++.+|++++.|+.|-.|++.+...... ...+.+|..+|.++.|+|++++|++.+.||.|++|
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~----~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ----EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch----heeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 123478888999999999999999999887665 67788999999999999999999999999999999
Q ss_pred EcCCCceeeeeccCC------CCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec--CCCcceeEEEeecCCC
Q 026679 128 DAYGGEKRCGFSLEP------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--GNIGVVACLKWAPRRA 199 (235)
Q Consensus 128 d~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~ 199 (235)
|+.++.....+..-. ....+..++|+|+|..++....|+.|.+|+..+++....+. .+...+..++|+|+|.
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence 999887655443211 12456779999998888888899999999999998887775 3445599999999999
Q ss_pred EEEEcc--cceEEeeCCC
Q 026679 200 MFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 200 ~l~~~~--~~i~iw~~~~ 215 (235)
|||+++ |.|.|||.++
T Consensus 246 YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 246 YIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEeeeccCCcEEEEeccc
Confidence 999998 8899999985
No 108
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.4e-25 Score=165.09 Aligned_cols=191 Identities=17% Similarity=0.344 Sum_probs=160.9
Q ss_pred EEEeecCCCeeEEEeccceEEEEecCcceeeeeeecc--CCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEee
Q 026679 19 SLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV 96 (235)
Q Consensus 19 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 96 (235)
-+.|+. .+.|+.|. ...|++|+..++........+ ...++.|+++|.+|++|..+|.|.|||..+.+. ...+
T Consensus 182 lldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~----~~~~ 255 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK----TRTL 255 (484)
T ss_pred Hhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc----cccc
Confidence 356773 44566654 457999999999877666663 345599999999999999999999999988665 4445
Q ss_pred cC-CCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC
Q 026679 97 GG-DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 175 (235)
Q Consensus 97 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 175 (235)
.. |...|.+++|. +..+.+|+.++.|..+|++..+.... .+..|...|..+.|++|+++||+|+.|+.+.|||...
T Consensus 256 ~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 256 RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS 332 (484)
T ss_pred cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCCCeeccCCCccceEeccCCC
Confidence 55 88999999998 56789999999999999999887666 4677778899999999999999999999999999988
Q ss_pred CceeeeecCCCcceeEEEeec-CCCEEEEcc----cceEEeeCCCCCC
Q 026679 176 RNEVACWNGNIGVVACLKWAP-RRAMFVAAS----SVLSFWIPNPSSN 218 (235)
Q Consensus 176 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~~i~iw~~~~~~~ 218 (235)
.+++..+..|.+.|..++|+| ...+||+|+ +.|++|+..++..
T Consensus 333 ~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~ 380 (484)
T KOG0305|consen 333 PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR 380 (484)
T ss_pred ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE
Confidence 899999999999999999999 567888887 5599999986543
No 109
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1e-23 Score=141.22 Aligned_cols=206 Identities=12% Similarity=0.164 Sum_probs=154.8
Q ss_pred cccceeEEEeecCCCeeEEEeccceEEEEecC------cce-----e-ee---eeeccC--CceEEEcCCCCEEEEEecC
Q 026679 13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLR------VNA-----C-QG---ILRLRG--RPTVAFDQQGLVFAVAMEA 75 (235)
Q Consensus 13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~------~~~-----~-~~---~~~~~~--~~~~~~~~~~~~l~~~~~d 75 (235)
.+..|.+++|+|.|.+.+.|+...+.+|-... .+. + .. .-+.|. +.+.+|+|+|+++++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 35789999999999999999999999987432 111 1 11 112222 3358999999999999999
Q ss_pred CeEEEEeccCCCCCCc-eeEeecCCCcceeEEEEcc--------------------------------------------
Q 026679 76 GAIKLFDSRSYDKGPF-DTFLVGGDTAEVCDIKFSN-------------------------------------------- 110 (235)
Q Consensus 76 g~v~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~~~-------------------------------------------- 110 (235)
.+|++...+....... ....+..|.+.|..++|..
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly 190 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY 190 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE
Confidence 9999876554222110 1122233444444444432
Q ss_pred --CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC-----CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec
Q 026679 111 --DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP-----NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN 183 (235)
Q Consensus 111 --~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 183 (235)
++-.+++|+.|.+|++||++-...+..+....+. ..|.+++..|.|++|++|-.|....+||++.++.++.+.
T Consensus 191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ 270 (350)
T KOG0641|consen 191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH 270 (350)
T ss_pred EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC
Confidence 3346778888999999999988777665433332 568899999999999999999999999999999999999
Q ss_pred CCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679 184 GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 184 ~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~ 218 (235)
.|...|.++.|+|.-.|+++++ ..|++=|+.+...
T Consensus 271 phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla 307 (350)
T KOG0641|consen 271 PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA 307 (350)
T ss_pred CCccceeEEEeCCCceEEEEecccceEEEeecccchh
Confidence 9999999999999999999998 6699988876543
No 110
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.3e-24 Score=150.93 Aligned_cols=194 Identities=16% Similarity=0.242 Sum_probs=157.5
Q ss_pred hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCC
Q 026679 9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK 88 (235)
Q Consensus 9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 88 (235)
.+..|..+|.|+.+++....+++||+|++|++||.+.......+.... .+.+.+-.++.|++|+.+..+.+||+++...
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEEeccCCEEEEeecCceEEEEEcccccc
Confidence 456799999999999988899999999999999998755555554443 5677788899999999999999999998775
Q ss_pred CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC----ceeeeeccCCC-------CCcceeeEEeCCCc
Q 026679 89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG----EKRCGFSLEPS-------PNTNTEATFTPDGQ 157 (235)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~-------~~~i~~~~~~~~~~ 157 (235)
.. ......-...++++++.|++.-+++++-||+|.+=.+... +....|+.|.. -.+|++++|+|--.
T Consensus 168 ~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 168 PF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred hh--hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 22 2222334467899999998888999999999988666554 22222332221 15799999999999
Q ss_pred EEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679 158 YVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205 (235)
Q Consensus 158 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 205 (235)
.|++|+.||.|.+||+.+.+.+.++......|..++|+.+|..||.++
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 999999999999999999999999987778899999999999999986
No 111
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.93 E-value=3e-24 Score=153.80 Aligned_cols=215 Identities=18% Similarity=0.249 Sum_probs=169.4
Q ss_pred hhcccccceeEEEeecC-CCeeEEEeccceEEEEecCcc-------eeeeeeeccCCce--EEEcCC-CCEEEEEecCCe
Q 026679 9 YFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVN-------ACQGILRLRGRPT--VAFDQQ-GLVFAVAMEAGA 77 (235)
Q Consensus 9 ~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~~--~~~~~~-~~~l~~~~~dg~ 77 (235)
.+.||+++|..++|+|- ...||+||.|.+|.||++..+ +++..+.+|...+ ++|+|. .+.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 35799999999999994 477999999999999998654 3466677887666 999994 578999999999
Q ss_pred EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679 78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 157 (235)
Q Consensus 78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (235)
|.+|++.+++. ...+. |...|.++.|+.||.+|++.+.|..|++||.++++.+..-..+... ....+.|-.+|.
T Consensus 156 v~iWnv~tgea----li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~-k~~Raifl~~g~ 229 (472)
T KOG0303|consen 156 VSIWNVGTGEA----LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA-KPARAIFLASGK 229 (472)
T ss_pred EEEEeccCCce----eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC-CcceeEEeccCc
Confidence 99999999875 44444 9999999999999999999999999999999999998877555442 345567888888
Q ss_pred EEEEeC---CCCcEEEEEcCCCcee---eeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCC-----CCCCCC
Q 026679 158 YVVSGS---GDGTLHAWNINTRNEV---ACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSS-----NSTDES 223 (235)
Q Consensus 158 ~l~~~~---~dg~i~v~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~-----~~~~~~ 223 (235)
.+.+|. .+..+.+||..+.+.- .++. ..+.|.---|.||...+..++ +.|+.|.+.... +.++.+
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 665553 3678999998765432 3333 344566667888988888876 669999997655 556777
Q ss_pred CCCCCCc
Q 026679 224 TDPQATV 230 (235)
Q Consensus 224 ~~~~~~i 230 (235)
.+|+..+
T Consensus 309 ~epQRG~ 315 (472)
T KOG0303|consen 309 KEPQRGM 315 (472)
T ss_pred CCccccc
Confidence 7777654
No 112
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.1e-24 Score=149.53 Aligned_cols=196 Identities=15% Similarity=0.251 Sum_probs=154.0
Q ss_pred hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCC--EEEEEecCCeEEEEecc
Q 026679 9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGL--VFAVAMEAGAIKLFDSR 84 (235)
Q Consensus 9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~--~l~~~~~dg~v~i~d~~ 84 (235)
....|.++|.+++|+.+|..+++|+.|+.+++||+.+++. ..+..|..++ +.|-+... .|++|+.|.+++.||.+
T Consensus 67 a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R 145 (347)
T KOG0647|consen 67 AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR 145 (347)
T ss_pred hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccC
Confidence 3456899999999999999999999999999999999954 4455555444 77776554 89999999999999998
Q ss_pred CCCCCC--------------------------ceeEeec-----------CCCcceeEEEEccCCCeEEEecCCCcEEEE
Q 026679 85 SYDKGP--------------------------FDTFLVG-----------GDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 127 (235)
Q Consensus 85 ~~~~~~--------------------------~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 127 (235)
...... +..+.+. ...-.+++++..+|.+..+.|+-+|.+.+.
T Consensus 146 ~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq 225 (347)
T KOG0647|consen 146 SSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQ 225 (347)
T ss_pred CCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEE
Confidence 643210 0011110 112457899999988888999999999999
Q ss_pred EcCCCceeee--eccCCC-------CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCC
Q 026679 128 DAYGGEKRCG--FSLEPS-------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR 198 (235)
Q Consensus 128 d~~~~~~~~~--~~~~~~-------~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 198 (235)
.+..+..... ++.|.. -..|++++|+|.-..|++++.||++.+||-.....+.+.+.|..+|++..|+.+|
T Consensus 226 ~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G 305 (347)
T KOG0647|consen 226 YIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNG 305 (347)
T ss_pred ecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCC
Confidence 8887633333 333321 2467889999998999999999999999998888888988999999999999999
Q ss_pred CEEEEcc
Q 026679 199 AMFVAAS 205 (235)
Q Consensus 199 ~~l~~~~ 205 (235)
.+++-+.
T Consensus 306 ~ifaYA~ 312 (347)
T KOG0647|consen 306 SIFAYAL 312 (347)
T ss_pred CEEEEEe
Confidence 9998774
No 113
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.9e-25 Score=157.31 Aligned_cols=210 Identities=18% Similarity=0.323 Sum_probs=159.7
Q ss_pred CchhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcc---------------------------eeee---
Q 026679 1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN---------------------------ACQG--- 50 (235)
Q Consensus 1 l~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~---------------------------~~~~--- 50 (235)
|.+.++...|++|.+.|..+++.. ..+++++.|.+|+.|.++.. +.+.
T Consensus 96 lsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD 173 (433)
T KOG0268|consen 96 LSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWD 173 (433)
T ss_pred hhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecc
Confidence 356678899999999999999986 67899999999999984321 1111
Q ss_pred --------eeec--cCCceEEEcCCC-CEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEec
Q 026679 51 --------ILRL--RGRPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 119 (235)
Q Consensus 51 --------~~~~--~~~~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 119 (235)
.+.- ....++.|+|.. ..|++|..|+.|.+||+++.......... -.-+.++|+|.+-.++++.
T Consensus 174 ~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-----mRTN~IswnPeafnF~~a~ 248 (433)
T KOG0268|consen 174 EQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT-----MRTNTICWNPEAFNFVAAN 248 (433)
T ss_pred cccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-----ccccceecCccccceeecc
Confidence 1111 123447788844 56778889999999999987753322222 2356789999888899999
Q ss_pred CCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec-CCCcceeEEEeecCC
Q 026679 120 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIGVVACLKWAPRR 198 (235)
Q Consensus 120 ~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~ 198 (235)
+|..++.||++..+.... ....|.+.|.++.|||.|+-+++|+.|.+|+||..+.+.....+. ..-..|.++.|+-|.
T Consensus 249 ED~nlY~~DmR~l~~p~~-v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 249 EDHNLYTYDMRNLSRPLN-VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS 327 (433)
T ss_pred ccccceehhhhhhcccch-hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc
Confidence 999999999987543221 234566789999999999999999999999999998877654442 123579999999999
Q ss_pred CEEEEcc--cceEEeeCCCCCC
Q 026679 199 AMFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 199 ~~l~~~~--~~i~iw~~~~~~~ 218 (235)
+++++|| +++++|.-+....
T Consensus 328 kyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 328 KYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred cEEEecCCCcceeeeecchhhh
Confidence 9999999 8899998865443
No 114
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.1e-23 Score=145.02 Aligned_cols=204 Identities=15% Similarity=0.293 Sum_probs=158.1
Q ss_pred cccccceeEEEeecCCCeeEEEeccceEEEEecCcc----eeeeeeeccCCce--EEEcC--CCCEEEEEecCCeEEEEe
Q 026679 11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN----ACQGILRLRGRPT--VAFDQ--QGLVFAVAMEAGAIKLFD 82 (235)
Q Consensus 11 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~~--~~~~~--~~~~l~~~~~dg~v~i~d 82 (235)
.+|.+-|.++.|.+.|+++|+|+.|++|+|||.+.. .+....+.|...+ +.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 369999999999999999999999999999996543 4666777887766 55544 689999999999999998
Q ss_pred ccCCCC-----CCceeEeecCCCcceeEEEEcc--CCCeEEEecCCCcEEEEEcCCCc----------------------
Q 026679 83 SRSYDK-----GPFDTFLVGGDTAEVCDIKFSN--DGKSMLLTTTNNNIYVLDAYGGE---------------------- 133 (235)
Q Consensus 83 ~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~---------------------- 133 (235)
-...+. .-.....+....+.|+++.|.| -|-.|++++.||.+++|+....-
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 632221 1123445566778999999999 47789999999999999862110
Q ss_pred -------------------------------------------eeeeeccCCCCCcceeeEEeCC----CcEEEEeCCCC
Q 026679 134 -------------------------------------------KRCGFSLEPSPNTNTEATFTPD----GQYVVSGSGDG 166 (235)
Q Consensus 134 -------------------------------------------~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg 166 (235)
....-++..+..+|+.++|.|+ -..||+++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 0111123456688999999995 35789999999
Q ss_pred cEEEEEcCCC--------------------ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679 167 TLHAWNINTR--------------------NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 167 ~i~v~d~~~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~ 215 (235)
|+||.++.. +.+..+..|.+.|+.+.|+-.|..|++.+ |.+++|..+-
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 999998731 23455678999999999999999999987 8899997653
No 115
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=8.8e-26 Score=152.82 Aligned_cols=202 Identities=17% Similarity=0.193 Sum_probs=176.1
Q ss_pred hhhcccccceeEEEeec---CCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679 8 RYFKGHKERVISLCMSP---VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD 82 (235)
Q Consensus 8 ~~~~~h~~~v~~~~~~~---~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d 82 (235)
....||+.+|..++|+| +|-+|++++.|+.-.+-+-++|.-+.++.+|...+ ..++.+....++++.|-+-++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 45679999999999986 67889999999999888888999999999998776 55666777888999999999999
Q ss_pred ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679 83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 162 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (235)
.-++.. .....|...|..++|+.|.++|++|+.+..+++||+...+... ....+|++.|..+.|....+.+++.
T Consensus 88 a~tgde-----lhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App-~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 88 AVTGDE-----LHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-KEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhh-----hhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc-hhhcCCCCcceeEEEeccCceEEee
Confidence 988774 2334577889999999999999999999999999998766432 3556788889999999999999999
Q ss_pred CCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCC
Q 026679 163 SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPS 216 (235)
Q Consensus 163 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~ 216 (235)
+.|+.|++||.+++..++++. ...+|+++..+++|++|..+. +.|++||.+.-
T Consensus 162 add~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf 215 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF 215 (334)
T ss_pred ccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc
Confidence 999999999999999999987 557899999999999999987 78999998753
No 116
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4e-24 Score=155.60 Aligned_cols=197 Identities=19% Similarity=0.267 Sum_probs=164.6
Q ss_pred chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcC--CCCEEEEEecCCeEE
Q 026679 2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQ--QGLVFAVAMEAGAIK 79 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~v~ 79 (235)
++.+.++.+++|.+.|.+++|-.....|++++.|++|++|+++....+.++.+|...++.++. -++.+-+|+.|++++
T Consensus 232 ~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~r 311 (479)
T KOG0299|consen 232 DTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVR 311 (479)
T ss_pred cccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeE
Confidence 467888999999999999999987788999999999999999999999999999877755544 567777788999999
Q ss_pred EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCC----------CCCccee
Q 026679 80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP----------SPNTNTE 149 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----------~~~~i~~ 149 (235)
+|++.... ...+.++.+.+-|++|-.+ .++++|+.+|.|.+|++...+++....... ++.+|++
T Consensus 312 lwKi~ees-----qlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wits 385 (479)
T KOG0299|consen 312 LWKIPEES-----QLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITS 385 (479)
T ss_pred EEeccccc-----eeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceee
Confidence 99995433 4556677888999999854 579999999999999999988877654321 1238899
Q ss_pred eEEeCCCcEEEEeCCCCcEEEEEcCCC----ceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679 150 ATFTPDGQYVVSGSGDGTLHAWNINTR----NEVACWNGNIGVVACLKWAPRRAMFVAAS 205 (235)
Q Consensus 150 ~~~~~~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 205 (235)
++..|...++++|+.+|.|++|.+.++ +++..+. -.+.|++++|+++|+.+++|-
T Consensus 386 la~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 386 LAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred eEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence 999999999999999999999999876 4455555 568899999999999887775
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=3.3e-24 Score=163.11 Aligned_cols=197 Identities=20% Similarity=0.248 Sum_probs=166.1
Q ss_pred hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEE
Q 026679 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKL 80 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i 80 (235)
+..++..|++|+..|.|++...++. +++||+|.++++|-. +++...+++|...+ ++.-|++ .+++|+.|.+|++
T Consensus 90 ~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIkl 165 (745)
T KOG0301|consen 90 QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKL 165 (745)
T ss_pred CCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeee
Confidence 4578889999999999999887776 999999999999964 56666688888776 5556666 8999999999999
Q ss_pred EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679 81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 160 (235)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (235)
|.-.+. ...+.+|..-|+.+++-+++. +++++.||.|++|++ +++.+. ..++|...+.++...+++..++
T Consensus 166 Wk~~~~------l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~--~~~ghtn~vYsis~~~~~~~Iv 235 (745)
T KOG0301|consen 166 WKGGTL------LKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLL--EMHGHTNFVYSISMALSDGLIV 235 (745)
T ss_pred ccCCch------hhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceee--eeeccceEEEEEEecCCCCeEE
Confidence 986432 445678999999999998764 899999999999998 666665 4456777799999888899999
Q ss_pred EeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCC
Q 026679 161 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP 215 (235)
Q Consensus 161 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~ 215 (235)
++++|+++++|+.. ++.+.+......|+++.+-++|..++.+| |.++||..+.
T Consensus 236 s~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 236 STGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 99999999999975 77777775556899999999999998888 9999998763
No 118
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=5.2e-25 Score=162.37 Aligned_cols=195 Identities=17% Similarity=0.243 Sum_probs=166.5
Q ss_pred ccceeEEEeecCCCeeEEEeccceEEEEecCcceeee--eeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG--ILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKG 89 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 89 (235)
.+.|.++...|||+.|++|+.-.++.|||+......- .+......| ++.+||.++.++++.||.|.|||+.+...
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~- 543 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL- 543 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee-
Confidence 4678899999999999999999999999997664432 233322334 89999999999999999999999998665
Q ss_pred CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEE
Q 026679 90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLH 169 (235)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 169 (235)
...+.+|...+.|+.+++||..|.+|+-|.+|+.||++.+..+..+.+. ..|.++..+|++.+|++|-+++.+.
T Consensus 544 ---VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~---SQIfSLg~cP~~dWlavGMens~ve 617 (705)
T KOG0639|consen 544 ---VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS---SQIFSLGYCPTGDWLAVGMENSNVE 617 (705)
T ss_pred ---eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh---hhheecccCCCccceeeecccCcEE
Confidence 7788899999999999999999999999999999999999887655443 5699999999999999999999999
Q ss_pred EEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679 170 AWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 170 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~ 216 (235)
|... ++.....+.-|++-|.++.|.+.|+++++.+ +-+..|...-+
T Consensus 618 vlh~-skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 618 VLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred EEec-CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence 9887 4555567777999999999999999999998 44888987543
No 119
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=4.5e-24 Score=147.83 Aligned_cols=202 Identities=16% Similarity=0.257 Sum_probs=154.5
Q ss_pred cccccceeEEEeec-CCCeeEEEeccceEEEEecCccee----------eeee-e----ccC--CceEEEcC-CCCEEEE
Q 026679 11 KGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNAC----------QGIL-R----LRG--RPTVAFDQ-QGLVFAV 71 (235)
Q Consensus 11 ~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~----------~~~~-~----~~~--~~~~~~~~-~~~~l~~ 71 (235)
+.|.+.|+++...+ .|+++++|+.||.|.+||++.-.. ...+ + .|. +..+.|-| |..+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46889999999988 578999999999999999975320 1111 1 111 22366777 6778999
Q ss_pred EecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccC---CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcce
Q 026679 72 AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT 148 (235)
Q Consensus 72 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~ 148 (235)
++.|.++++||..+.+. ......++.|.+-+++|- ..++++|..+-.|++.|+.+|...+.+. +|...|.
T Consensus 120 sSFDhtlKVWDtnTlQ~-----a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls--GHr~~vl 192 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQE-----AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS--GHRDGVL 192 (397)
T ss_pred ccccceEEEeeccccee-----eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec--cccCceE
Confidence 99999999999998764 222234567888888883 3467888889999999999999877655 5556799
Q ss_pred eeEEeCCCcE-EEEeCCCCcEEEEEcCCC-cee--------------eeecCCCcceeEEEeecCCCEEEEcc--cceEE
Q 026679 149 EATFTPDGQY-VVSGSGDGTLHAWNINTR-NEV--------------ACWNGNIGVVACLKWAPRRAMFVAAS--SVLSF 210 (235)
Q Consensus 149 ~~~~~~~~~~-l~~~~~dg~i~v~d~~~~-~~~--------------~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~i 210 (235)
++.|+|...+ |++|+.||.|++||++.. .+. ..-..|.+.+.+++|+.++.++++.+ ..+++
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 9999998776 578999999999999753 111 11235778999999999999999998 66999
Q ss_pred eeCCCCCCC
Q 026679 211 WIPNPSSNS 219 (235)
Q Consensus 211 w~~~~~~~~ 219 (235)
|+...+...
T Consensus 273 wn~~~G~nt 281 (397)
T KOG4283|consen 273 WNMESGRNT 281 (397)
T ss_pred eecccCccc
Confidence 999766543
No 120
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=6e-25 Score=168.29 Aligned_cols=200 Identities=17% Similarity=0.247 Sum_probs=168.5
Q ss_pred cccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcC---CCCEEEEEecCCeEEEEeccCCC
Q 026679 13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ---QGLVFAVAMEAGAIKLFDSRSYD 87 (235)
Q Consensus 13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~---~~~~l~~~~~dg~v~i~d~~~~~ 87 (235)
....+.+++.+|+|++||+|..-|+++||++..-+....+..|...+ +.++. ..++|++++.|.-|.+||+...-
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 34579999999999999999999999999999988888888888766 55553 45789999999999999986421
Q ss_pred CCCceeEeecCC-------------------------------------------------CcceeEEEEccCCCeEEEe
Q 026679 88 KGPFDTFLVGGD-------------------------------------------------TAEVCDIKFSNDGKSMLLT 118 (235)
Q Consensus 88 ~~~~~~~~~~~~-------------------------------------------------~~~v~~~~~~~~~~~l~~~ 118 (235)
. ....+.+| ...++.++..|..++++++
T Consensus 538 ~---l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 538 D---LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred c---hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence 1 01111111 2346677888888899999
Q ss_pred cCCCcEEEEEcCCCceeeeeccCC-CCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecC
Q 026679 119 TTNNNIYVLDAYGGEKRCGFSLEP-SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR 197 (235)
Q Consensus 119 ~~d~~i~~~d~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 197 (235)
+.|..|++||+.+++..+.|+... +.+....+...|.|.||++...|.++.++|.-+++++.++.+|...|+.+.|.+|
T Consensus 615 cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND 694 (1080)
T ss_pred ecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeeccc
Confidence 999999999999999999887654 4477888999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcc--cceEEeeCCC
Q 026679 198 RAMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 198 ~~~l~~~~--~~i~iw~~~~ 215 (235)
.+.|++.+ |.|.||.+..
T Consensus 695 CkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 695 CKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chhheeecCCceEEEEECch
Confidence 99999887 7799999864
No 121
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=4.1e-23 Score=143.47 Aligned_cols=195 Identities=14% Similarity=0.226 Sum_probs=148.6
Q ss_pred cccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC-ceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCc
Q 026679 13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF 91 (235)
Q Consensus 13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 91 (235)
....|+++.|+|.++.|+.+++||++++||+........++.... ..++|.+ ...+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~---- 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN---- 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc----
Confidence 467899999999999999999999999999988866555554332 2366665 6679999999999999999876
Q ss_pred eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEE
Q 026679 92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW 171 (235)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~ 171 (235)
...+..|..++.++..++....+++|+.|++|++||.+.......+... ..|.++.. .|+.|++|+.+..+.+|
T Consensus 87 -~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~---kkVy~~~v--~g~~LvVg~~~r~v~iy 160 (323)
T KOG1036|consen 87 -EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG---KKVYCMDV--SGNRLVVGTSDRKVLIY 160 (323)
T ss_pred -ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC---ceEEEEec--cCCEEEEeecCceEEEE
Confidence 4667789999999999998888999999999999999874443322211 24555444 55677777777778888
Q ss_pred EcCCCce------------------------------------------------eeeecCCC---------cceeEEEe
Q 026679 172 NINTRNE------------------------------------------------VACWNGNI---------GVVACLKW 194 (235)
Q Consensus 172 d~~~~~~------------------------------------------------~~~~~~~~---------~~v~~~~~ 194 (235)
|+++... ...++.|. -+|.+|+|
T Consensus 161 DLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 161 DLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred EcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 8765321 11233342 37899999
Q ss_pred ecCCCEEEEcc--cceEEeeCCCCCC
Q 026679 195 APRRAMFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 195 ~~~~~~l~~~~--~~i~iw~~~~~~~ 218 (235)
+|-...+++|+ |.+.+||+...+.
T Consensus 241 hp~~~tfaTgGsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 241 HPIHGTFATGGSDGIVNIWDLFNRKR 266 (323)
T ss_pred ccccceEEecCCCceEEEccCcchhh
Confidence 99999999998 7799999976543
No 122
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.9e-25 Score=157.37 Aligned_cols=169 Identities=18% Similarity=0.348 Sum_probs=131.7
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeecc---CCceEEEcCCCCEEEEEecCCeEEEE
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR---GRPTVAFDQQGLVFAVAMEAGAIKLF 81 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~v~i~ 81 (235)
++.+++.+|..+|..+.||||.++|++|+.|..+++||+.+|.....+... ...+++|.|||..+++|+.|+.+..|
T Consensus 260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~w 339 (519)
T KOG0293|consen 260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMW 339 (519)
T ss_pred eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEe
Confidence 456788999999999999999999999999999999999999988877654 24459999999999999999999999
Q ss_pred eccCCCCCCc--------eeEe-----------------------------ecCCCcceeEEEEccCCC-----------
Q 026679 82 DSRSYDKGPF--------DTFL-----------------------------VGGDTAEVCDIKFSNDGK----------- 113 (235)
Q Consensus 82 d~~~~~~~~~--------~~~~-----------------------------~~~~~~~v~~~~~~~~~~----------- 113 (235)
|+........ .-.. +.....++++++.+.+++
T Consensus 340 dlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei 419 (519)
T KOG0293|consen 340 DLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEI 419 (519)
T ss_pred cCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCee
Confidence 8865221000 0000 001234555665555554
Q ss_pred ----------------------------------eEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcE
Q 026679 114 ----------------------------------SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQY 158 (235)
Q Consensus 114 ----------------------------------~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 158 (235)
++++|++|+.|++|+..+++++..+..| ...|++++|+| +..+
T Consensus 420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH--s~~vNcVswNP~~p~m 497 (519)
T KOG0293|consen 420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH--SKTVNCVSWNPADPEM 497 (519)
T ss_pred EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCC--cceeeEEecCCCCHHH
Confidence 6777888899999999999888776654 46699999999 5667
Q ss_pred EEEeCCCCcEEEEEcCC
Q 026679 159 VVSGSGDGTLHAWNINT 175 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~~ 175 (235)
+|+++.||+|+||....
T Consensus 498 ~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 498 FASASDDGTIRIWGPSD 514 (519)
T ss_pred hhccCCCCeEEEecCCc
Confidence 89999999999998753
No 123
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.6e-23 Score=145.50 Aligned_cols=199 Identities=14% Similarity=0.211 Sum_probs=158.9
Q ss_pred ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679 12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKG 89 (235)
Q Consensus 12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 89 (235)
.|.-.|..+-...++.+|++++.|..|.+|+++ |+.+..+......- .+.+|+|+++++++....|++|.+--.+.+
T Consensus 185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG 263 (420)
T KOG2096|consen 185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG 263 (420)
T ss_pred hcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc
Confidence 466777788887788999999999999999998 88888877665433 899999999999999999999987433221
Q ss_pred ----CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC-------Cceeeee--ccCCCCCcceeeEEeCCC
Q 026679 90 ----PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-------GEKRCGF--SLEPSPNTNTEATFTPDG 156 (235)
Q Consensus 90 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-------~~~~~~~--~~~~~~~~i~~~~~~~~~ 156 (235)
....+.+.+|.+.|..++|+++.+.+++.+.||.+++||..- .+.++.. .++...+....++++|+|
T Consensus 264 ~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g 343 (420)
T KOG2096|consen 264 TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG 343 (420)
T ss_pred chhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC
Confidence 234677899999999999999999999999999999999742 1222222 122222344579999999
Q ss_pred cEEEEeCCCCcEEEEEcCCCceeeeec-CCCcceeEEEeecCCCEEEEcc-cceEEee
Q 026679 157 QYVVSGSGDGTLHAWNINTRNEVACWN-GNIGVVACLKWAPRRAMFVAAS-SVLSFWI 212 (235)
Q Consensus 157 ~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~ 212 (235)
+.|+.+.. ..|++|..++++....++ .|...|.+|+|+++|+++++++ ..+++..
T Consensus 344 ~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 344 DSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred cEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 99887654 369999999988776664 6889999999999999999998 6688876
No 124
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=8e-24 Score=150.77 Aligned_cols=205 Identities=17% Similarity=0.293 Sum_probs=153.9
Q ss_pred hhhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCccee---eeeeeccCCce--EEEcC-CCCEEEEEecCC
Q 026679 4 NRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNAC---QGILRLRGRPT--VAFDQ-QGLVFAVAMEAG 76 (235)
Q Consensus 4 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg 76 (235)
.+++.++.+|...=..++|||-. ..|++|..-+.|++|...++.- ...+.+|...+ ++|+| ....|++|+.||
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg 280 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG 280 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc
Confidence 45677889999999999999943 4588998889999999887642 22344455554 99999 457899999999
Q ss_pred eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC---CceeeeeccCCCCCcceeeEEe
Q 026679 77 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG---GEKRCGFSLEPSPNTNTEATFT 153 (235)
Q Consensus 77 ~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---~~~~~~~~~~~~~~~i~~~~~~ 153 (235)
+|+|||++.....+. .....|.+.|+.+.|+..-.+|++|+.||++++||+|. ++++..++.| ..+|+++.|+
T Consensus 281 sIrIWDiRs~~~~~~--~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H--k~pItsieW~ 356 (440)
T KOG0302|consen 281 SIRIWDIRSGPKKAA--VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH--KAPITSIEWH 356 (440)
T ss_pred eEEEEEecCCCccce--eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec--cCCeeEEEec
Confidence 999999998754443 33478999999999999888999999999999999986 4455566554 4669999999
Q ss_pred C-CCcEEEEeCCCCcEEEEEcCCCce----------------eeeecCC--CcceeEEEeecCCC-EEEEcc-cceEEee
Q 026679 154 P-DGQYVVSGSGDGTLHAWNINTRNE----------------VACWNGN--IGVVACLKWAPRRA-MFVAAS-SVLSFWI 212 (235)
Q Consensus 154 ~-~~~~l~~~~~dg~i~v~d~~~~~~----------------~~~~~~~--~~~v~~~~~~~~~~-~l~~~~-~~i~iw~ 212 (235)
| +...|++++.|..|.+||+....- .+.+..| ...+..+.|++.-. ++++.+ ..+.||.
T Consensus 357 p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 357 PHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred cccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 9 456788899999999999853211 0111223 24688899998643 444444 5566664
No 125
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=3.3e-22 Score=148.22 Aligned_cols=209 Identities=12% Similarity=0.111 Sum_probs=151.6
Q ss_pred hhhhhhhhcccccceeEEEeecCCCeeEE-EeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCC-eEE
Q 026679 3 DNRILRYFKGHKERVISLCMSPVNDSFMS-GSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAG-AIK 79 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg-~v~ 79 (235)
+++.+..+..+.. +..++|+|+++.+++ ++.|+.+++||+++.+.+..+.... ...++++|++..++++..++ .+.
T Consensus 62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAH 140 (300)
T ss_pred CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEE
Confidence 3445555555443 567899999987654 4568999999999888777766433 44599999999999988765 466
Q ss_pred EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEec-CCCcEEEEEcCCCceeeeeccCCC-----CCcceeeEEe
Q 026679 80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSLEPS-----PNTNTEATFT 153 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~-----~~~i~~~~~~ 153 (235)
.||..+.+. .... ........++|+|+++.|++++ .++.|++||+.+++....+..... ......++|+
T Consensus 141 ~~d~~~~~~----~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 215 (300)
T TIGR03866 141 FIDTKTYEI----VDNV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLT 215 (300)
T ss_pred EEeCCCCeE----EEEE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEEC
Confidence 778876442 1111 1223457789999999886554 589999999999877665543211 1123568899
Q ss_pred CCCcEEEE-eCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCCC
Q 026679 154 PDGQYVVS-GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSN 218 (235)
Q Consensus 154 ~~~~~l~~-~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~ 218 (235)
|+++++++ .+.++.+.+||+++++.+..+. +...+.+++|+|++.+|++++ +.|++||+++.+.
T Consensus 216 ~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 216 KDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 99998654 4556789999999888776554 445789999999999998763 7899999988664
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=2.4e-24 Score=158.91 Aligned_cols=199 Identities=16% Similarity=0.199 Sum_probs=158.1
Q ss_pred ccccceeEEEeecCCCeeEEEeccceEEEEecCcc---eeeeeeecc----CCceEEEcCCCCEEEEEecCCeEEEEecc
Q 026679 12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN---ACQGILRLR----GRPTVAFDQQGLVFAVAMEAGAIKLFDSR 84 (235)
Q Consensus 12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~----~~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 84 (235)
.|.+-|.++.++...++++||+. |.|+|||+... .++..+..- -...+.+.|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 58888999999988899999986 78999999643 223333222 24458899999999999999999999998
Q ss_pred CCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679 85 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 164 (235)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (235)
...... ...+....-....++.+||.+..++++.||.|.+||+.+...+..+.. |...+.|+.+++||..|.+|+-
T Consensus 496 apTpri--kaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG--htDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 496 APTPRI--KAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG--HTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred CCCcch--hhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccC--CCCCceeEEecCCCceeecCCC
Confidence 765411 112222234567889999999999999999999999999888876654 5566999999999999999999
Q ss_pred CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcccceEEeeCCCC
Q 026679 165 DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPS 216 (235)
Q Consensus 165 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~ 216 (235)
|.+++.||+++++.+.... ..+.|.++..+|++.+++.|-.+-.+|-+.+.
T Consensus 572 DntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred ccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC
Confidence 9999999999998876654 45789999999999999999744445544433
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.2e-23 Score=150.05 Aligned_cols=198 Identities=17% Similarity=0.256 Sum_probs=163.3
Q ss_pred ccceeEEEeecCCCeeEEEeccceEEEEecCc--ceeeeeeeccCCc--eEEEcCCCC-EEEEEecCCeEEEEeccCCCC
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRV--NACQGILRLRGRP--TVAFDQQGL-VFAVAMEAGAIKLFDSRSYDK 88 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~--~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~ 88 (235)
.+.|+++.|+|....|++++.|+++++|.++. +..++.+.....+ ..+|.|+|. .+++++.....+.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 36899999999999999999999999998854 3455555555544 489999998 899999999999999988765
Q ss_pred CCceeEeecCC-CcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCc
Q 026679 89 GPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 167 (235)
Q Consensus 89 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (235)
.+... ..++ ...+..+..+|++++|+..+..|.|.+....+++.+..+++. +.+..++|+.+++.|++++.+|.
T Consensus 293 ~k~~~--~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie---G~v~~~~fsSdsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 293 TKLKP--PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE---GVVSDFTFSSDSKELLASGGTGE 367 (514)
T ss_pred ccccC--CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec---cEEeeEEEecCCcEEEEEcCCce
Confidence 33221 1222 346778899999999999999999999999999999888776 45899999999999999999999
Q ss_pred EEEEEcCCCceeeeecCCCc-ceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679 168 LHAWNINTRNEVACWNGNIG-VVACLKWAPRRAMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 168 i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~ 216 (235)
|++||++...+++.+....+ .-++++.++++.++|+|+ |.+.|||.++.
T Consensus 368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 368 VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC 419 (514)
T ss_pred EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence 99999999999888864322 235677789999999998 88999997654
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.7e-23 Score=144.45 Aligned_cols=211 Identities=20% Similarity=0.355 Sum_probs=162.4
Q ss_pred hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC--------------------------
Q 026679 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-------------------------- 56 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-------------------------- 56 (235)
+...-+.+.+|..+|++++||++|+.|+|+|.|..|.+||+..|.+.+.+....
T Consensus 54 T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~v 133 (405)
T KOG1273|consen 54 TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVV 133 (405)
T ss_pred ccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEE
Confidence 445667889999999999999999999999999999999998887666554320
Q ss_pred ----------------------CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCe
Q 026679 57 ----------------------RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS 114 (235)
Q Consensus 57 ----------------------~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 114 (235)
.....|++.|+++++|...|.+.++|..+.+........ . ...|..+.++..|+.
T Consensus 134 i~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit--s-~~~IK~I~~s~~g~~ 210 (405)
T KOG1273|consen 134 IDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT--S-VQAIKQIIVSRKGRF 210 (405)
T ss_pred EEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec--h-heeeeEEEEeccCcE
Confidence 000235667899999999999999999987652221111 1 367889999999999
Q ss_pred EEEecCCCcEEEEEcCC-------Ccee--eeeccCCCCCcceeeEEeCCCcEEEEeCC-CCcEEEEEcCCCceeeeecC
Q 026679 115 MLLTTTNNNIYVLDAYG-------GEKR--CGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINTRNEVACWNG 184 (235)
Q Consensus 115 l~~~~~d~~i~~~d~~~-------~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~ 184 (235)
|+.-+.|..|+.|+++. ++.. +.+.---.+..-.+++|+.+|.|++.++. ...++||....|.+++.+.+
T Consensus 211 liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG 290 (405)
T KOG1273|consen 211 LIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG 290 (405)
T ss_pred EEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC
Confidence 99999999999999862 1111 11111112233567899999999987764 46799999999999999988
Q ss_pred CC-cceeEEEeecCCCEEEEcc-cceEEeeCCCC
Q 026679 185 NI-GVVACLKWAPRRAMFVAAS-SVLSFWIPNPS 216 (235)
Q Consensus 185 ~~-~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~ 216 (235)
.. .....+.|+|-...+++-. |.+++|.....
T Consensus 291 ~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 291 TKGEELLDVNWHPVRPIIASIASGVVYIWAVVQV 324 (405)
T ss_pred CchhheeecccccceeeeeeccCCceEEEEeecc
Confidence 77 5778899999999888876 99999987543
No 129
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.5e-23 Score=152.10 Aligned_cols=200 Identities=18% Similarity=0.328 Sum_probs=153.8
Q ss_pred cccccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcC-CCCEEEEEecCCeEEEEeccCC
Q 026679 11 KGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLFDSRSY 86 (235)
Q Consensus 11 ~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~d~~~~ 86 (235)
.+|+..|.+++|+..- +.||+||.|.+|++||+.++++..++..++..+ +.|+| ....|++|+.|++|.+.|.+..
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 4799999999998864 679999999999999999999999998776544 99999 5688999999999999999964
Q ss_pred CCCCceeEeecCCCcceeEEEEccCC-CeEEEecCCCcEEEEEcCCC-ceeeeeccCCCCCcceeeEEeCC-CcEEEEeC
Q 026679 87 DKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPD-GQYVVSGS 163 (235)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~ 163 (235)
..... ... ..+.|-.++|.|.. ..++++..||+|+-+|+|.. +++ +.++.|...|.++++++. ..++++++
T Consensus 320 ~~s~~-~wk---~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~v--wt~~AHd~~ISgl~~n~~~p~~l~t~s 393 (463)
T KOG0270|consen 320 SNSGK-EWK---FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPV--WTLKAHDDEISGLSVNIQTPGLLSTAS 393 (463)
T ss_pred cccCc-eEE---eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCce--eEEEeccCCcceEEecCCCCcceeecc
Confidence 33111 222 24678899999954 45777889999999999986 444 455667778999999985 45788999
Q ss_pred CCCcEEEEEcCCCcee--eeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCC
Q 026679 164 GDGTLHAWNINTRNEV--ACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPS 216 (235)
Q Consensus 164 ~dg~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~ 216 (235)
.|+.+++|++...... ..-.-.-+...|.++.|+-.++++.+ +.++|||+.+.
T Consensus 394 ~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 394 TDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 9999999998654432 22111224567888888776655544 45999998654
No 130
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=3.2e-23 Score=143.64 Aligned_cols=164 Identities=18% Similarity=0.284 Sum_probs=135.6
Q ss_pred cccccceeEEEeec-CCCeeEEEeccceEEEEecCcceeeeeeeccCCc-eEEEcC---CCCEEEEEecCCeEEEEeccC
Q 026679 11 KGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQ---QGLVFAVAMEAGAIKLFDSRS 85 (235)
Q Consensus 11 ~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~---~~~~l~~~~~dg~v~i~d~~~ 85 (235)
.+|.-.|.++.|-| |...+.+++.|.+++|||..+-+....++.++.. .-+++| ...++++|..+-.|++.|+..
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S 177 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS 177 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence 46888999999999 5578899999999999999998888888776643 366777 346788889999999999999
Q ss_pred CCCCCceeEeecCCCcceeEEEEccCCCe-EEEecCCCcEEEEEcCCC-ceeeee-----------c-cCCCCCcceeeE
Q 026679 86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKS-MLLTTTNNNIYVLDAYGG-EKRCGF-----------S-LEPSPNTNTEAT 151 (235)
Q Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~-~~~~~~-----------~-~~~~~~~i~~~~ 151 (235)
+.. ...+.+|...|.++.|+|..++ |++|+.||.|++||++.. .+...+ + ...|.+.+..++
T Consensus 178 Gs~----sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla 253 (397)
T KOG4283|consen 178 GSF----SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA 253 (397)
T ss_pred Ccc----eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence 876 7889999999999999998776 667889999999999854 222111 1 234568899999
Q ss_pred EeCCCcEEEEeCCCCcEEEEEcCCCce
Q 026679 152 FTPDGQYVVSGSGDGTLHAWNINTRNE 178 (235)
Q Consensus 152 ~~~~~~~l~~~~~dg~i~v~d~~~~~~ 178 (235)
|+.++.++++++.|..+++|+..+|+.
T Consensus 254 ~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 254 WTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ecccchhhhhccCccceEEeecccCcc
Confidence 999999999999999999999887653
No 131
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.7e-23 Score=160.84 Aligned_cols=188 Identities=19% Similarity=0.319 Sum_probs=156.7
Q ss_pred ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679 12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKG 89 (235)
Q Consensus 12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 89 (235)
..+-++.+++|+.+|+++|.||.|-.|++-++.+......+.+|..++ +.++|++++||+.+.||.|++||+.++...
T Consensus 94 Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 94 RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS 173 (933)
T ss_pred eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhh
Confidence 345689999999999999999999999999999999999999998776 889999999999999999999999976542
Q ss_pred CceeEee---c-CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679 90 PFDTFLV---G-GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 165 (235)
Q Consensus 90 ~~~~~~~---~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (235)
....... . .....+..++|+|++..+++.+.|+.|++|+..+.+....+....+...+..+.|+|+|+|||+++.|
T Consensus 174 ~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~ 253 (933)
T KOG1274|consen 174 KTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD 253 (933)
T ss_pred hhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccC
Confidence 1111100 0 11456778999999989999999999999999999988888877776779999999999999999999
Q ss_pred CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEE
Q 026679 166 GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA 203 (235)
Q Consensus 166 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 203 (235)
|.|.|||..+-.. ......|.+++|.|+...+-.
T Consensus 254 g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 254 GQILVWNVDTHER----HEFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred CcEEEEecccchh----ccccceeEEEecCCCCCeeEE
Confidence 9999999987222 223468999999998765543
No 132
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.2e-22 Score=150.91 Aligned_cols=200 Identities=14% Similarity=0.264 Sum_probs=165.1
Q ss_pred ccceeEEEeecCCCeeEEEeccceEEEEecCcce-eeeeeeccCCc---eEEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-CQGILRLRGRP---TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG 89 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~---~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 89 (235)
..+|.+|+++.+.+.||.+-.||.|.+|++..+- +...+.++... .++|. ++..|++.+.+|.|.-||+.+.+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~- 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ- 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce-
Confidence 4789999999999999999999999999998764 44556665533 38999 555688888999999999998876
Q ss_pred CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEE
Q 026679 90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLH 169 (235)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 169 (235)
........+.+.+++.+|.+..++.|++||.+..++...++......+...++.+.++.|+|++..|+.|+.||.|+
T Consensus 103 ---~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 103 ---KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred ---eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 66677778899999999999999999999988888888888877777777778899999999999999999999999
Q ss_pred EEEcCCCceeeeec--------CCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679 170 AWNINTRNEVACWN--------GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 219 (235)
Q Consensus 170 v~d~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~ 219 (235)
+||...+..+.... ....-|+++.|-.++ .|++|+ |.+++||...+++.
T Consensus 180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLI 238 (691)
T ss_pred EEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchh
Confidence 99999988776221 123357788887665 556665 99999999876544
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=4.9e-23 Score=159.79 Aligned_cols=193 Identities=16% Similarity=0.250 Sum_probs=163.8
Q ss_pred ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeee---eccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCC
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL---RLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDK 88 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 88 (235)
...+++++.++.|++.+.|...|.|-+||+++|-....+ ..|...+ ++.+.-++.+++++.+|.+.+||......
T Consensus 448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l 527 (910)
T KOG1539|consen 448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL 527 (910)
T ss_pred CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce
Confidence 467899999999999999999999999999999888887 3555555 77777788899999999999999987552
Q ss_pred CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcE
Q 026679 89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL 168 (235)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (235)
...+ .-...+.++..+.....++.+..|-.|.++|..+.+.++.+..+. ..|++++|||||++|++++.|++|
T Consensus 528 ----~~~l-~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~--nritd~~FS~DgrWlisasmD~tI 600 (910)
T KOG1539|consen 528 ----KKSL-RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHG--NRITDMTFSPDGRWLISASMDSTI 600 (910)
T ss_pred ----eeee-ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccc--cceeeeEeCCCCcEEEEeecCCcE
Confidence 1111 223567788888888889999999999999999999888776554 569999999999999999999999
Q ss_pred EEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCC
Q 026679 169 HAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPN 214 (235)
Q Consensus 169 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~ 214 (235)
++||+.++.++..+. -..++.++.|+|+|.+|++.. ..|++|.-.
T Consensus 601 r~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 601 RTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred EEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 999999999988775 457899999999999999997 459999643
No 134
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=5.5e-22 Score=147.02 Aligned_cols=208 Identities=15% Similarity=0.118 Sum_probs=151.1
Q ss_pred chhhhhhhhcccccceeEEEeecCCCee-EEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEE-ecCCeE
Q 026679 2 YDNRILRYFKGHKERVISLCMSPVNDSF-MSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVA-MEAGAI 78 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~dg~v 78 (235)
.+++.++.+.+|.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+. ...++++|+++.++++ ..++.+
T Consensus 19 ~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l 97 (300)
T TIGR03866 19 ATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLV 97 (300)
T ss_pred CCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeE
Confidence 35666777776644 6789999999876 567788999999999888776665443 3448899999877655 568999
Q ss_pred EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCC-cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679 79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 157 (235)
Q Consensus 79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (235)
++||+++.+. .... .....+.+++|+|+++.++++..++ .+.+||..+++........ ..+..++|+|+++
T Consensus 98 ~~~d~~~~~~----~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~ 169 (300)
T TIGR03866 98 TVIDIETRKV----LAEI-PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD---QRPRFAEFTADGK 169 (300)
T ss_pred EEEECCCCeE----EeEe-eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC---CCccEEEECCCCC
Confidence 9999987442 2222 2223467899999999999888765 4677899887765543322 2356799999999
Q ss_pred EEEEe-CCCCcEEEEEcCCCceeeeecCCC-------cceeEEEeecCCCEEEEc--c-cceEEeeCCCCCC
Q 026679 158 YVVSG-SGDGTLHAWNINTRNEVACWNGNI-------GVVACLKWAPRRAMFVAA--S-SVLSFWIPNPSSN 218 (235)
Q Consensus 158 ~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~--~-~~i~iw~~~~~~~ 218 (235)
+|+++ ..++.|++||+++++.+..+..+. .....++|+|++++++.+ + +.+.+||.++.+.
T Consensus 170 ~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~ 241 (300)
T TIGR03866 170 ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV 241 (300)
T ss_pred EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 88654 468999999999988766654221 123568899999986544 2 5699999876544
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.4e-22 Score=138.33 Aligned_cols=192 Identities=15% Similarity=0.225 Sum_probs=149.9
Q ss_pred eeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeE
Q 026679 17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF 94 (235)
Q Consensus 17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 94 (235)
-.|+.|++.|.+||.|..||.|.|||+.+...-+.+..|..++ ++|+++|+.|++++.|..+.+||+..+.. ....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~--l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP--LKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc--eeEE
Confidence 6799999999999999999999999999998888887776554 99999999999999999999999998774 2222
Q ss_pred eecCCCcceeEEEEccCCC-eEEEecCCCcEEEEEcCCCceeeeeccCCC---CCcceeeEEeCCCcEEEEeCCCCcEEE
Q 026679 95 LVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPS---PNTNTEATFTPDGQYVVSGSGDGTLHA 170 (235)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~v 170 (235)
...++|..+.|+|... ..++.-.+..-.+.++..+... .+..... .....+..|.+.|+++++|...|.+.+
T Consensus 104 ---rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv 179 (405)
T KOG1273|consen 104 ---RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV 179 (405)
T ss_pred ---EccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEE
Confidence 2357899999999543 3333333444556665543221 1111111 122334568999999999999999999
Q ss_pred EEcCCCceeeeecCCC-cceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679 171 WNINTRNEVACWNGNI-GVVACLKWAPRRAMFVAAS--SVLSFWIPN 214 (235)
Q Consensus 171 ~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~--~~i~iw~~~ 214 (235)
||..+.+++..++... ..|..+.++..|++++..+ ..|+.|+++
T Consensus 180 ~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 180 YDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred EecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 9999999998887665 7899999999999999887 679999876
No 136
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=4.7e-22 Score=146.69 Aligned_cols=189 Identities=16% Similarity=0.258 Sum_probs=157.8
Q ss_pred hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc---eEEEcCCCC-EEEEEecCCeEE
Q 026679 4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP---TVAFDQQGL-VFAVAMEAGAIK 79 (235)
Q Consensus 4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~-~l~~~~~dg~v~ 79 (235)
..+.+.+++|...|+++.++....+||+++..|.|.|..+.++.....+...... .+.++|..+ +|.+++.+|.|.
T Consensus 111 kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 111 KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence 3466778999999999999999999999999999999999998887777766433 378999665 566788999999
Q ss_pred EEeccCCCCCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679 80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 158 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (235)
+||+..... .......|..+...++|+|. ...|++.+.|..|.+||.+.......+... .+...++|+++|.+
T Consensus 191 lwDv~g~sp---~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 191 LWDVQGMSP---IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS---HPLSTVAFSECGTY 264 (673)
T ss_pred EEeccCCCc---ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec---CCcceeeecCCceE
Confidence 999987654 23345678899999999994 556778899999999999977766555543 44788999999999
Q ss_pred EEEeCCCCcEEEEEcCC-CceeeeecCCCcceeEEEeecCC
Q 026679 159 VVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRR 198 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~ 198 (235)
|+.|+..|.|..||++. ..++..+..|...|++++|-|.-
T Consensus 265 L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 265 LCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999999999985 55788888999999999998864
No 137
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1e-21 Score=137.17 Aligned_cols=172 Identities=17% Similarity=0.245 Sum_probs=132.1
Q ss_pred chhhhhhhhcccccceeEEEeecCCC--eeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCe
Q 026679 2 YDNRILRYFKGHKERVISLCMSPVND--SFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGA 77 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~ 77 (235)
.+.+.+..+-.|.+.|+++.|.++-. +|++|+.||.|.+|+.....++..++.|...+ ++++|.+++.++.+.|+.
T Consensus 71 ~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~ 150 (362)
T KOG0294|consen 71 RKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQV 150 (362)
T ss_pred cchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCce
Confidence 34556667778999999999999764 89999999999999999999999999988666 999999999999999999
Q ss_pred EEEEeccCCCCCCceeEeec-----------------------------------CCCcceeEEEEccCCCeEEEecCCC
Q 026679 78 IKLFDSRSYDKGPFDTFLVG-----------------------------------GDTAEVCDIKFSNDGKSMLLTTTNN 122 (235)
Q Consensus 78 v~i~d~~~~~~~~~~~~~~~-----------------------------------~~~~~v~~~~~~~~~~~l~~~~~d~ 122 (235)
++.||+-+++.......... ..+..+.++.|. ++..|++|.+|+
T Consensus 151 lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 151 LRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNE 229 (362)
T ss_pred eeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCc
Confidence 99999977653211110000 001123333333 445688888889
Q ss_pred cEEEEEcCCCceeeeeccCCCCCcceeeEE--eCCCcEEEEeCCCCcEEEEEcCCC
Q 026679 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATF--TPDGQYVVSGSGDGTLHAWNINTR 176 (235)
Q Consensus 123 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~v~d~~~~ 176 (235)
.|.+||..+..+...+. .|+..|-.+.+ .|++.+|++++.||.|+|||++..
T Consensus 230 ~i~~~D~ds~~~~~~~~--AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 230 WISLKDTDSDTPLTEFL--AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEeccCCCccceeee--cchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99999988876666554 45566877774 567889999999999999999765
No 138
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=3.1e-22 Score=152.55 Aligned_cols=208 Identities=17% Similarity=0.239 Sum_probs=165.6
Q ss_pred hhhhcccccceeEEEeecCCCeeEEEecc-----ceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEE
Q 026679 7 LRYFKGHKERVISLCMSPVNDSFMSGSLD-----HSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK 79 (235)
Q Consensus 7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~ 79 (235)
++.+-||.-.|.+++.+|+++++|++... ..|++|+..+......+..|.-.+ ++|+||+++|++.+.|+++.
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence 45678999999999999999999998764 359999999988888899998666 99999999999999999999
Q ss_pred EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC--ceeeeeccCCCCCcceeeEEeCC--
Q 026679 80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRCGFSLEPSPNTNTEATFTPD-- 155 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~i~~~~~~~~-- 155 (235)
+|.................|..-|.++.|+|++.++++++.|..|++|..... +.+..+.......+++.+++.|-
T Consensus 598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~ 677 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDH 677 (764)
T ss_pred eeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccc
Confidence 99986655444444457789999999999999999999999999999999877 54544444456678999999872
Q ss_pred ---CcEEEEeCCCCcEEEEEcCCCc------------eeeeecCCCcceeEEEeecC----------CCEEEEcc--cce
Q 026679 156 ---GQYVVSGSGDGTLHAWNINTRN------------EVACWNGNIGVVACLKWAPR----------RAMFVAAS--SVL 208 (235)
Q Consensus 156 ---~~~l~~~~~dg~i~v~d~~~~~------------~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~--~~i 208 (235)
+..+++|-+.|.|.+|....-. ......+|...|..+.|.|. ...|++|+ .++
T Consensus 678 ~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~v 757 (764)
T KOG1063|consen 678 NEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESV 757 (764)
T ss_pred ccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeeccccee
Confidence 3378899999999999965111 11122356778999999975 23456666 668
Q ss_pred EEeeCC
Q 026679 209 SFWIPN 214 (235)
Q Consensus 209 ~iw~~~ 214 (235)
++++++
T Consensus 758 ri~nv~ 763 (764)
T KOG1063|consen 758 RIFNVD 763 (764)
T ss_pred EEeecc
Confidence 888764
No 139
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.8e-22 Score=145.58 Aligned_cols=208 Identities=17% Similarity=0.245 Sum_probs=167.1
Q ss_pred hhhhhhhcccccceeEEEeecCCC-eeEEEeccceEEEEecCcceeeeeeeccC-----CceEEEcCCCCEEEEEecCCe
Q 026679 4 NRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRG-----RPTVAFDQQGLVFAVAMEAGA 77 (235)
Q Consensus 4 ~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~dg~ 77 (235)
+..++.+.--..+|.+.+|.|+|. .+++++....++.||+.+.+..+.-...+ .....++|++++|+..+..|.
T Consensus 247 N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~ 326 (514)
T KOG2055|consen 247 NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH 326 (514)
T ss_pred ChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCce
Confidence 344555555667999999999998 89999999999999998876554433222 223788999999999999999
Q ss_pred EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679 78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 157 (235)
Q Consensus 78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (235)
|.+....+++. +..++ ..+.|..+.|+.+++.|++++.+|.|++||++...++..+.-.+.- .-+.++.++++.
T Consensus 327 I~lLhakT~el--i~s~K---ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v-~gts~~~S~ng~ 400 (514)
T KOG2055|consen 327 IHLLHAKTKEL--ITSFK---IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV-HGTSLCISLNGS 400 (514)
T ss_pred EEeehhhhhhh--hheee---eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc-ceeeeeecCCCc
Confidence 99998888664 12222 3468999999999999999999999999999999888887755432 346688889999
Q ss_pred EEEEeCCCCcEEEEEcCC------CceeeeecCCCcceeEEEeecCCCEEEEcc----cceEEeeCCCCC
Q 026679 158 YVVSGSGDGTLHAWNINT------RNEVACWNGNIGVVACLKWAPRRAMFVAAS----SVLSFWIPNPSS 217 (235)
Q Consensus 158 ~l~~~~~dg~i~v~d~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~i~iw~~~~~~ 217 (235)
|||+|+..|.|.|||..+ .+++..+..-...|++|+|+|+.++|+.+| ..+++-.+.+..
T Consensus 401 ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T 470 (514)
T KOG2055|consen 401 YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT 470 (514)
T ss_pred eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence 999999999999999753 456677766678899999999999999998 448887775543
No 140
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=2.6e-22 Score=146.31 Aligned_cols=207 Identities=15% Similarity=0.227 Sum_probs=160.1
Q ss_pred hhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeeeeccCCce----EEEcCCCCEEEEEecCCeEEEE
Q 026679 7 LRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAFDQQGLVFAVAMEAGAIKLF 81 (235)
Q Consensus 7 ~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~dg~v~i~ 81 (235)
+..+..|+++|.++.|+|.. ..+++.|.||+|+.-|++.......+....... +.++.+...++.+..-|...+|
T Consensus 227 v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~i 306 (498)
T KOG4328|consen 227 VYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVI 306 (498)
T ss_pred eEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEE
Confidence 44567899999999999965 789999999999999998876555555433222 6677777888888888899999
Q ss_pred eccCCCCCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeee--eccCCCCCcceeeEEeCCCcE
Q 026679 82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCG--FSLEPSPNTNTEATFTPDGQY 158 (235)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~ 158 (235)
|.++... ....+.-|...|++++++|- ..+|++++.|++.++||++.-..... +..-.|...|.+..|||.+-.
T Consensus 307 D~R~~~s---~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt 383 (498)
T KOG4328|consen 307 DLRTDGS---EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT 383 (498)
T ss_pred EeecCCc---cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc
Confidence 9998664 23344557779999999994 56789999999999999987544442 444567788999999998777
Q ss_pred EEEeCCCCcEEEEEcC----CCceeeeecCCCc------ceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679 159 VVSGSGDGTLHAWNIN----TRNEVACWNGNIG------VVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~----~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~ 217 (235)
|++.+.|..|+|||.. ...+...+. |.. ......|.|+..++++|- ..|-|++-+.++
T Consensus 384 l~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 384 LLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred eEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 9999999999999983 334444443 321 344668999999999997 668899887765
No 141
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=8.4e-23 Score=163.21 Aligned_cols=210 Identities=17% Similarity=0.238 Sum_probs=162.6
Q ss_pred hhhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeee----eccCCceEEEcC-CCCEEEEEecCCe
Q 026679 4 NRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGIL----RLRGRPTVAFDQ-QGLVFAVAMEAGA 77 (235)
Q Consensus 4 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~----~~~~~~~~~~~~-~~~~l~~~~~dg~ 77 (235)
...+.+++.|++.|..+.|++.. ++||+|+.||.|.|||+...+.-... ....+.+++|+. ....|++++.+|.
T Consensus 106 ~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~ 185 (1049)
T KOG0307|consen 106 EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR 185 (1049)
T ss_pred hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC
Confidence 35678889999999999999975 59999999999999999875543333 223345588876 4567889999999
Q ss_pred EEEEeccCCCCCCceeEeecCCCcceeEEEEccCC-CeEEEecCCC---cEEEEEcCCCc-eeeeeccCCCCCcceeeEE
Q 026679 78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNN---NIYVLDAYGGE-KRCGFSLEPSPNTNTEATF 152 (235)
Q Consensus 78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~---~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~ 152 (235)
+.|||++..+. ...+........+..++|+|+. ..+++++.|. .|.+||+|.-. ..+++ ..|...|.++.|
T Consensus 186 ~~iWDlr~~~p--ii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~--~~H~~GilslsW 261 (1049)
T KOG0307|consen 186 AVIWDLRKKKP--IIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL--EGHQRGILSLSW 261 (1049)
T ss_pred ceeccccCCCc--ccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh--cccccceeeecc
Confidence 99999998653 2222323333457899999975 4566666644 49999998644 34444 455667999999
Q ss_pred eCCC-cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCC-EEEEcc--cceEEeeCCCCC
Q 026679 153 TPDG-QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 153 ~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~~i~iw~~~~~~ 217 (235)
++.+ ++|++++.|+.|.+|+.++++.+..+......+..+.|+|... .+++++ |.|.||.+.+..
T Consensus 262 c~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 262 CPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9965 8999999999999999999999999988888999999999877 444555 889999987654
No 142
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=9.8e-22 Score=142.74 Aligned_cols=186 Identities=14% Similarity=0.223 Sum_probs=141.7
Q ss_pred CCeeEEEeccceEEEEecCcceee---ee------------------eeccCCce--EEEcC-CCCEEEEEecCCeEEEE
Q 026679 26 NDSFMSGSLDHSVRIWDLRVNACQ---GI------------------LRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLF 81 (235)
Q Consensus 26 ~~~l~s~~~d~~i~vwd~~~~~~~---~~------------------~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~ 81 (235)
|+++|.|..|..|.|||+.-...+ .. ..+|...+ ++|+. -.+.|++|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 579999999999999998632100 00 01222222 44444 34689999999999999
Q ss_pred eccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCC-ceeeeeccCCCCCcceeeEEeCC-CcE
Q 026679 82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPD-GQY 158 (235)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~ 158 (235)
|+.++++ ...+..|...|.++.|+| ....|++|+.|++|.+.|.|.. ..-..++.. +.|..++|.|. ...
T Consensus 272 D~~~g~p----~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~---g~VEkv~w~~~se~~ 344 (463)
T KOG0270|consen 272 DVDTGKP----KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD---GEVEKVAWDPHSENS 344 (463)
T ss_pred EcCCCCc----ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec---cceEEEEecCCCcee
Confidence 9999886 556667899999999999 5778999999999999999952 222233333 45888999995 456
Q ss_pred EEEeCCCCcEEEEEcCCC-ceeeeecCCCcceeEEEeecCCCE-EEEcc--cceEEeeCCCCCC
Q 026679 159 VVSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAM-FVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~--~~i~iw~~~~~~~ 218 (235)
+++++.||.++-+|+|+. +++.+++.|.++|.+|++++.-.. +++++ +.+++|++.....
T Consensus 345 f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred EEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 778889999999999975 899999999999999999986544 55555 7799999976544
No 143
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=9.4e-22 Score=149.96 Aligned_cols=193 Identities=15% Similarity=0.254 Sum_probs=163.6
Q ss_pred hhcccccceeE-EEeec-CCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcC-CCCEEEEEecCCeEEEEeccC
Q 026679 9 YFKGHKERVIS-LCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQ-QGLVFAVAMEAGAIKLFDSRS 85 (235)
Q Consensus 9 ~~~~h~~~v~~-~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~v~i~d~~~ 85 (235)
.+.+|.+-|.+ +++.+ ++..+++|+.|.++.+|......+...+++|..++++.+. ....+++|+.|.++++|-...
T Consensus 52 ~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~ 131 (745)
T KOG0301|consen 52 AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE 131 (745)
T ss_pred ecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh
Confidence 36677777776 77775 4456999999999999999999999999999998877764 333489999999999998765
Q ss_pred CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679 86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 165 (235)
Q Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (235)
.. ..+.+|+..|.+++.-|+. .+++|+.|.+|++|.- ++..+.+.. |...|+.+++-|++ .+++++.|
T Consensus 132 l~------~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~g--HtD~VRgL~vl~~~-~flScsND 199 (745)
T KOG0301|consen 132 LV------YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSG--HTDCVRGLAVLDDS-HFLSCSND 199 (745)
T ss_pred hh------cccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhcc--chhheeeeEEecCC-CeEeecCC
Confidence 33 3478999999999999987 7999999999999974 666666654 66779999998875 46789999
Q ss_pred CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679 166 GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 214 (235)
Q Consensus 166 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~ 214 (235)
|.|+.|++ +++.+.++.+|...|+++...+++..+++++ ++++||+..
T Consensus 200 g~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 200 GSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 99999999 8999999999999999999888888888887 889999876
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=8.9e-21 Score=144.29 Aligned_cols=204 Identities=15% Similarity=0.205 Sum_probs=164.1
Q ss_pred hhccc-ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccC
Q 026679 9 YFKGH-KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRS 85 (235)
Q Consensus 9 ~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~ 85 (235)
.+.++ .+.|.+++|++ +..|++.+.+|.|.-||+.+.+....+...+..+ ++.+|.+..++.|+.||.+..++...
T Consensus 63 vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p 141 (691)
T KOG2048|consen 63 VIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGP 141 (691)
T ss_pred EEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCC
Confidence 34554 46899999995 6678899999999999999999988888777665 89999999999999999777777766
Q ss_pred CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc-----CC-CCCcceeeEEeCCCcEE
Q 026679 86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-----EP-SPNTNTEATFTPDGQYV 159 (235)
Q Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~-~~~~i~~~~~~~~~~~l 159 (235)
... .....+....+.+.+++|+|++..++.|+.||.|++||...++....... .. .+.-|.++.|-.+ ..|
T Consensus 142 ~~I--~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI 218 (691)
T KOG2048|consen 142 DKI--TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STI 218 (691)
T ss_pred ceE--EEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcE
Confidence 443 12233444568899999999999999999999999999999887763222 22 2233555555544 578
Q ss_pred EEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679 160 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 160 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~ 216 (235)
++|...|.|.+||...+.++..+..|.+.|.+++..+++.++.+++ +.+.-|...+.
T Consensus 219 ~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 219 ASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred EEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 9999999999999999999999999999999999999999998888 66666666554
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=7.7e-22 Score=143.85 Aligned_cols=206 Identities=17% Similarity=0.244 Sum_probs=157.0
Q ss_pred hhhhhhcccccceeEEEeecCC--CeeEEEeccceEEEEecCcc----eeeeeeeccCCce--EEEcC-CCCEEEEEecC
Q 026679 5 RILRYFKGHKERVISLCMSPVN--DSFMSGSLDHSVRIWDLRVN----ACQGILRLRGRPT--VAFDQ-QGLVFAVAMEA 75 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~d 75 (235)
......+-|.++|++++|+|.. +++|+|..-|.|-+||+.+. ..+..+..|..++ +.|+| +...+++.+.|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 3445567789999999999965 57899999999999999532 2334445555444 99999 55789999999
Q ss_pred CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce-eeeeccCCCCCcceeeEEeC
Q 026679 76 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-RCGFSLEPSPNTNTEATFTP 154 (235)
Q Consensus 76 g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~i~~~~~~~ 154 (235)
|+|++-|+++..... ..........+..+.|+.+...++++..=|...+||++++.. ...+.++ ...|..++++|
T Consensus 257 GtiR~~D~~~~i~e~--v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh--~kKI~sv~~NP 332 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEE--VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH--KKKITSVALNP 332 (498)
T ss_pred ceeeeeeecchhhHH--HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhh--hcccceeecCC
Confidence 999999998754322 222223445678889998888888888878999999998765 3333444 34699999999
Q ss_pred C-CcEEEEeCCCCcEEEEEcCCCceee----eecCCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679 155 D-GQYVVSGSGDGTLHAWNINTRNEVA----CWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 214 (235)
Q Consensus 155 ~-~~~l~~~~~dg~i~v~d~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~ 214 (235)
- ..+||+++.|++.+|||++...... ....|...|.+..|+|.+-.|++.+ ..|+|||..
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 4 5678999999999999998643322 2345889999999999887788887 779999984
No 146
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=9.5e-22 Score=146.71 Aligned_cols=209 Identities=13% Similarity=0.223 Sum_probs=170.7
Q ss_pred hhcccccceeEEEeecCCCeeEEEeccceEEEEecCc--------ceeeeeeeccCCce--EEEcCCCCEEEEEecCCeE
Q 026679 9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV--------NACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAI 78 (235)
Q Consensus 9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~--------~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v 78 (235)
++..|.+.|+.+.|.|....|++++.||++++|+++. -+++.++.+|..++ +++.+++..+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 4567889999999999999999999999999999932 24677888888776 7788899999999999999
Q ss_pred EEEeccCCC------CCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec-------------
Q 026679 79 KLFDSRSYD------KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS------------- 139 (235)
Q Consensus 79 ~i~d~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~------------- 139 (235)
+.|++.... ......-.+.+|...++.+++++....|++++.||+++.|+...... ..+.
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence 999765211 11223445678999999999999999999999999999999754433 1110
Q ss_pred -------------------------------------cCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee
Q 026679 140 -------------------------------------LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 182 (235)
Q Consensus 140 -------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 182 (235)
.......+..+.++|.+.+.+++.+|+.|+++|..+++.++..
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence 0001134566788898999999999999999999999999999
Q ss_pred cCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679 183 NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 183 ~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~ 218 (235)
..|...++++++.|+|.+|++++ +.+++|.++....
T Consensus 528 ~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 528 VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred eeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 99999999999999999999998 7799999866543
No 147
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=2.2e-21 Score=150.70 Aligned_cols=153 Identities=14% Similarity=0.154 Sum_probs=132.0
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEee---cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceee
Q 026679 60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV---GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC 136 (235)
Q Consensus 60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 136 (235)
++.++.|++.+.|...|.|-+|+++.+-. ...+ ..|..+|+.++...-++.+++++.+|.+.+||........
T Consensus 454 v~vs~CGNF~~IG~S~G~Id~fNmQSGi~----r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~ 529 (910)
T KOG1539|consen 454 VCVSFCGNFVFIGYSKGTIDRFNMQSGIH----RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK 529 (910)
T ss_pred EEEeccCceEEEeccCCeEEEEEcccCee----ecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee
Confidence 66677788888888888999998887643 2333 4788999999999888999999999999999999888776
Q ss_pred eeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679 137 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 214 (235)
Q Consensus 137 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~ 214 (235)
.+... ..+.++..+.....++.+..|-.|+++|..+.+.+..+.+|...|++++|||||++|++++ ++|++||+.
T Consensus 530 ~l~l~---~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 530 SLRLG---SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred eeccC---CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 66654 3478888888888999999999999999999999999999999999999999999999998 889999998
Q ss_pred CCCCC
Q 026679 215 PSSNS 219 (235)
Q Consensus 215 ~~~~~ 219 (235)
++.+.
T Consensus 607 t~~lI 611 (910)
T KOG1539|consen 607 TGTLI 611 (910)
T ss_pred Cccee
Confidence 76543
No 148
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=4.2e-21 Score=134.69 Aligned_cols=199 Identities=19% Similarity=0.369 Sum_probs=148.4
Q ss_pred hhhhhhhhcc--cccc---eeEEEeecCCCeeEEEeccceEEEEec-Ccceeeeee---ec-----cC-CceEEEcC-CC
Q 026679 3 DNRILRYFKG--HKER---VISLCMSPVNDSFMSGSLDHSVRIWDL-RVNACQGIL---RL-----RG-RPTVAFDQ-QG 66 (235)
Q Consensus 3 ~~~~~~~~~~--h~~~---v~~~~~~~~~~~l~s~~~d~~i~vwd~-~~~~~~~~~---~~-----~~-~~~~~~~~-~~ 66 (235)
+|++-..+++ |... -.+++|+|||..|++|- ...|+++|+ +.|+.-..+ .. .+ ..+++++| +.
T Consensus 142 tG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~ 220 (406)
T KOG2919|consen 142 TGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDS 220 (406)
T ss_pred ccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCC
Confidence 3444444543 4443 45899999999999875 578999999 555422211 11 11 23489999 55
Q ss_pred CEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcCCCc-eeeeeccCCCC
Q 026679 67 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGE-KRCGFSLEPSP 144 (235)
Q Consensus 67 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~-~~~~~~~~~~~ 144 (235)
+.+++++....+-||.-..... ...+.+|.+.|+.++|.++|+.|++|.. +..|..||+|... ++..+..+..
T Consensus 221 ~~~a~gsY~q~~giy~~~~~~p----l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~- 295 (406)
T KOG2919|consen 221 KTLAVGSYGQRVGIYNDDGRRP----LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVG- 295 (406)
T ss_pred cceeeecccceeeeEecCCCCc----eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhcc-
Confidence 6899999988888887665554 6667799999999999999999999986 7789999998654 3332222221
Q ss_pred Cccee--eEEeCCCcEEEEeCCCCcEEEEEcCC-CceeeeecCCCcceeEEEeecCCCEEEEcccc
Q 026679 145 NTNTE--ATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRAMFVAASSV 207 (235)
Q Consensus 145 ~~i~~--~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 207 (235)
..-.. ....|++++|++|+.||.|++||+++ +..+..+..+...+..++++|--.++++++|.
T Consensus 296 ~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 296 DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 02223 44568999999999999999999998 77788888899999999999998999998876
No 149
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=3.7e-21 Score=145.61 Aligned_cols=212 Identities=17% Similarity=0.245 Sum_probs=152.0
Q ss_pred hhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeee--eeccCCce--EEEcC-CCCEEEEEecCCeEEEE
Q 026679 7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGI--LRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLF 81 (235)
Q Consensus 7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~ 81 (235)
++.+..|.+.|..+.|.|....|++++.|.++++||+++.++... +.+|...+ ++|.| +...|++|+.||.+.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 455678999999999999667899999999999999999887766 66776544 99999 55789999999999999
Q ss_pred eccCCCCC------------------Cc-----eeEeecCCCcceeE---EEEccCCCeEEEecC-CCcEEEEEcCCCce
Q 026679 82 DSRSYDKG------------------PF-----DTFLVGGDTAEVCD---IKFSNDGKSMLLTTT-NNNIYVLDAYGGEK 134 (235)
Q Consensus 82 d~~~~~~~------------------~~-----~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~ 134 (235)
|++-.... +. .......+...+.+ +.+..|...|++++. |+.|++||++....
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 98753210 00 01111223334444 455668888999888 99999999987544
Q ss_pred eee------eccCCC---CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCc--eeeeecCCCc--ceeEEEeecCCCEE
Q 026679 135 RCG------FSLEPS---PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN--EVACWNGNIG--VVACLKWAPRRAMF 201 (235)
Q Consensus 135 ~~~------~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~l 201 (235)
... ...+.+ ...+.++.....|.+|++.+.|+.|++|++.+.. ++..+.++.. ....-..+|++.++
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence 322 122222 2446778888888999888889999999997543 3455554422 11222458999999
Q ss_pred EEcc--cceEEeeCCCCCC
Q 026679 202 VAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 202 ~~~~--~~i~iw~~~~~~~ 218 (235)
++|+ ...++|.++....
T Consensus 333 ~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred eccCCCcceeeeeecCccC
Confidence 9998 7799999876543
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=1e-21 Score=144.91 Aligned_cols=194 Identities=14% Similarity=0.210 Sum_probs=155.6
Q ss_pred eEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEe
Q 026679 18 ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL 95 (235)
Q Consensus 18 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 95 (235)
.|++......++++|+..+.|+|||++...+.+.++.|...+ +.++....+||+++..|.|.+..+.+... ...
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~----tt~ 158 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK----TTT 158 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc----ccc
Confidence 344444445789999999999999999877888888887655 88888999999999999999999988664 222
Q ss_pred ec-CCCcceeEEEEccCCCe-EEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC-CcEEEEeCCCCcEEEEE
Q 026679 96 VG-GDTAEVCDIKFSNDGKS-MLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD-GQYVVSGSGDGTLHAWN 172 (235)
Q Consensus 96 ~~-~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d 172 (235)
+. +....|+-+.|+|..+. |.+++.+|.|.+||+....+...+ ...|..+...++|+|. ..+|++.+.|..|.+||
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~-~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA-SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch-hhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 22 22345778999997665 556889999999999776665543 3567788999999995 55678899999999999
Q ss_pred cCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679 173 INTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~ 217 (235)
.+..+....+. ...+...++|.++|.+|++|. |.+..||++..+
T Consensus 238 ~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 238 IRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred cccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 98777766665 456899999999999999998 889999998654
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=7.7e-22 Score=138.47 Aligned_cols=210 Identities=17% Similarity=0.263 Sum_probs=154.2
Q ss_pred chhhhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeeeec---cCCce--EEEcCCCCEEEEEecC
Q 026679 2 YDNRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRL---RGRPT--VAFDQQGLVFAVAMEA 75 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~~--~~~~~~~~~l~~~~~d 75 (235)
.++++...+.+|...|+.+.++|+. ++++++|.|.+||+||+++..++..+-+ |...+ +.|+++|.++++++.|
T Consensus 123 ~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD 202 (385)
T KOG1034|consen 123 VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMD 202 (385)
T ss_pred chhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCc
Confidence 4678888999999999999999976 7899999999999999999999988754 44444 8899999999999999
Q ss_pred CeEEEEeccCCCCC----------------C-------ceeE-eecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcC-
Q 026679 76 GAIKLFDSRSYDKG----------------P-------FDTF-LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY- 130 (235)
Q Consensus 76 g~v~i~d~~~~~~~----------------~-------~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~- 130 (235)
.++++|++...+.. + ...+ ...-|...|-|+.|- |+++++-+-++.|..|...
T Consensus 203 hslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgk 280 (385)
T KOG1034|consen 203 HSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGK 280 (385)
T ss_pred ceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecch
Confidence 99999999832210 0 0011 223456667777775 5788888889999999872
Q ss_pred CCce-------------eeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCcee--eeec--CCCcceeEEE
Q 026679 131 GGEK-------------RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV--ACWN--GNIGVVACLK 193 (235)
Q Consensus 131 ~~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~--~~~~~v~~~~ 193 (235)
-++. ...+..+...-+-...+|.|-+++|+.|...|.+++||+++.++. .++. .....|...+
T Consensus 281 l~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~s 360 (385)
T KOG1034|consen 281 LEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTS 360 (385)
T ss_pred hhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeee
Confidence 1111 122222222222334566778899999999999999999877663 2222 1245799999
Q ss_pred eecCCCEEEEcccceEEeeC
Q 026679 194 WAPRRAMFVAASSVLSFWIP 213 (235)
Q Consensus 194 ~~~~~~~l~~~~~~i~iw~~ 213 (235)
|+.|+.+|+....+..||.+
T Consensus 361 fS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 361 FSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred ecccCcEEEEEeCCCcEEEE
Confidence 99999999888755555544
No 152
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=2.4e-21 Score=147.81 Aligned_cols=207 Identities=19% Similarity=0.298 Sum_probs=160.1
Q ss_pred hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcce----ee--eeeeccCCceEEEcCCCCEEEEEecCCeEEEE
Q 026679 8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA----CQ--GILRLRGRPTVAFDQQGLVFAVAMEAGAIKLF 81 (235)
Q Consensus 8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~ 81 (235)
..+.||.+.|++++|+|.|++|++.|.|.+-|++-.-..+ .+ ..+.++...++++-+....|++|.....+++|
T Consensus 355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF 434 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVF 434 (764)
T ss_pred cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeee
Confidence 3467999999999999999999999999999998654111 11 12334456678887777788899888999999
Q ss_pred eccC-------------------------------------------CC------------------CCC----------
Q 026679 82 DSRS-------------------------------------------YD------------------KGP---------- 90 (235)
Q Consensus 82 d~~~-------------------------------------------~~------------------~~~---------- 90 (235)
+... +. .+|
T Consensus 435 ~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tL 514 (764)
T KOG1063|consen 435 EAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTL 514 (764)
T ss_pred cCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhcc
Confidence 7542 00 000
Q ss_pred -ceeEeecCCCcceeEEEEccCCCeEEEecCC-----CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679 91 -FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 164 (235)
Q Consensus 91 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (235)
....++.+|...|.+++.+|+++.+++++.. ..|++|+..+....+.+ ..|.-.|+.++|||||++|++.+.
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L--~~HsLTVT~l~FSpdg~~LLsvsR 592 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL--EGHSLTVTRLAFSPDGRYLLSVSR 592 (764)
T ss_pred chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee--cccceEEEEEEECCCCcEEEEeec
Confidence 0012334688899999999999999998864 35999998887766644 455567999999999999999999
Q ss_pred CCcEEEEEcCCCce----eeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679 165 DGTLHAWNINTRNE----VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 165 dg~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~ 216 (235)
|.++.+|....... ....+.|..-|++..|+|++.+++++| ..+++|.....
T Consensus 593 DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 593 DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 99999999754322 233678999999999999999999999 67999988655
No 153
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=5.7e-21 Score=144.61 Aligned_cols=214 Identities=20% Similarity=0.309 Sum_probs=151.4
Q ss_pred hhhhhhh--hcccccceeEEEeecCC-CeeEEEeccceEEEEecCccee--------------------e-------eee
Q 026679 3 DNRILRY--FKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNAC--------------------Q-------GIL 52 (235)
Q Consensus 3 ~~~~~~~--~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~--------------------~-------~~~ 52 (235)
+++++.. +.||...|.+++|.|.. ..|++|+.||.|.|||++.... . ...
T Consensus 131 ~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~ 210 (720)
T KOG0321|consen 131 TSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW 210 (720)
T ss_pred cceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence 4455555 88999999999999966 5789999999999999863220 0 000
Q ss_pred eccCCc--e---EEEcCCCCEEEEEec-CCeEEEEeccCCCC----CCceeEeecCC---CcceeEEEEccCCCeEEEec
Q 026679 53 RLRGRP--T---VAFDQQGLVFAVAME-AGAIKLFDSRSYDK----GPFDTFLVGGD---TAEVCDIKFSNDGKSMLLTT 119 (235)
Q Consensus 53 ~~~~~~--~---~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~----~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~ 119 (235)
..+... . +.+..|...|++++. |+.|++||++.... .+.....+..+ ...+.++.....|.+|++.+
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC 290 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC 290 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence 111111 1 556678889999888 99999999987543 22222233333 34567788888889999999
Q ss_pred CCCcEEEEEcCCCceeeeeccCCC--CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCc-eeeeecCCCcceeEEEeec
Q 026679 120 TNNNIYVLDAYGGEKRCGFSLEPS--PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN-EVACWNGNIGVVACLKWAP 196 (235)
Q Consensus 120 ~d~~i~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~ 196 (235)
.|+.|++|++.+..........++ ...-..-..+|++.+|++|+.|...++|.+.+.+ ....+.+|...|++++|.|
T Consensus 291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence 999999999987654333222222 2222334578999999999999999999998754 3566789999999999988
Q ss_pred CC-CEEEEcc--cceEEeeCCCC
Q 026679 197 RR-AMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 197 ~~-~~l~~~~--~~i~iw~~~~~ 216 (235)
.. .-+++++ ..+++|++...
T Consensus 371 S~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 371 SATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ccCCCceeeccCcceEEEeccCc
Confidence 32 3344445 66999999543
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=6.6e-22 Score=158.19 Aligned_cols=203 Identities=15% Similarity=0.278 Sum_probs=155.1
Q ss_pred ccceeEEEeecCCCe----eEEEeccceEEEEecCc---c---eeeeeeeccCCce--EEEcCC-CCEEEEEecCCeEEE
Q 026679 14 KERVISLCMSPVNDS----FMSGSLDHSVRIWDLRV---N---ACQGILRLRGRPT--VAFDQQ-GLVFAVAMEAGAIKL 80 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~----l~s~~~d~~i~vwd~~~---~---~~~~~~~~~~~~~--~~~~~~-~~~l~~~~~dg~v~i 80 (235)
......++|.+.+.. ||.|..||.|.+||... + ..+.....|...+ +.|++. +++|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 356788999987755 88899999999999865 2 2344455566555 899995 459999999999999
Q ss_pred EeccCCCCCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC-cE
Q 026679 81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG-QY 158 (235)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 158 (235)
||+.+.+.....- .....+.|.+++|+.. ...|++++.+|.+.+||++..+.+..+........+..++|+|+. ..
T Consensus 144 WDlnn~~tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred eccCCcCCCCCCC--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 9999865422111 2234578999999874 456778888999999999999877766666555567889999975 45
Q ss_pred EEEeCCC---CcEEEEEcCC-CceeeeecCCCcceeEEEeecCC-CEEEEcc--cceEEeeCCCCCC
Q 026679 159 VVSGSGD---GTLHAWNINT-RNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 159 l~~~~~d---g~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~~i~iw~~~~~~~ 218 (235)
|+++++| -.|.+||+|. ..++.++++|...|.++.|++.+ +++++++ +.+.+|+.++++.
T Consensus 222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv 288 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV 288 (1049)
T ss_pred eeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE
Confidence 5555554 3599999985 45677888999999999999966 7777777 6799999988654
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.8e-20 Score=132.23 Aligned_cols=189 Identities=15% Similarity=0.200 Sum_probs=145.5
Q ss_pred CeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcC--CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCC-c
Q 026679 27 DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT-A 101 (235)
Q Consensus 27 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-~ 101 (235)
..+|++-..|.|++||..+++.+..++.+.... +.|.. ....+.+|+.||+|++||++.....+ .+....+. .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a--~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA--RISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh--heeccCCCCC
Confidence 458888889999999999999999998887554 77766 56789999999999999999876533 33344444 5
Q ss_pred ceeEEEEccCCCeEEEecC----CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEEEEeCCCCcEEEEEcCCC
Q 026679 102 EVCDIKFSNDGKSMLLTTT----NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINTR 176 (235)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~ 176 (235)
+..+++....++.+++|.. +-.|.+||+|..+.....-...|...|+++.|+| +.++|++|+.||.+.+||++..
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 6677777767777877764 6779999999987733333466778899999999 5789999999999999999754
Q ss_pred ce---eeeecCCCcceeEEEeecCC--CEEEEcc-cceEEeeCCCCC
Q 026679 177 NE---VACWNGNIGVVACLKWAPRR--AMFVAAS-SVLSFWIPNPSS 217 (235)
Q Consensus 177 ~~---~~~~~~~~~~v~~~~~~~~~--~~l~~~~-~~i~iw~~~~~~ 217 (235)
.. +...-.|...|..+.|..++ +...... ++..+|+++...
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 32 22333477889999999887 4333333 999999997665
No 156
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.1e-20 Score=136.57 Aligned_cols=195 Identities=11% Similarity=0.124 Sum_probs=143.3
Q ss_pred eEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc--eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEe
Q 026679 18 ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL 95 (235)
Q Consensus 18 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 95 (235)
.+++|+++|..+++++.||++|||+......+.....+... .+.|+|||+.|++-+.| ..++|+.+++.. .....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~--~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA--LARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch--hhhcC
Confidence 78999999999999999999999997776666655555544 49999999999999999 999999998743 11111
Q ss_pred ecCCCcceeEEEEccCC---CeEE--EecCCCcEEEEEcCCCce---eeeeccCCCCCcceeeEEeCCCcEEEEeCCCCc
Q 026679 96 VGGDTAEVCDIKFSNDG---KSML--LTTTNNNIYVLDAYGGEK---RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 167 (235)
Q Consensus 96 ~~~~~~~v~~~~~~~~~---~~l~--~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (235)
-...+.....+.|+.|+ .+++ .....+.|..||+...+. .+..+.-.....|++++.+++|++++.|+.||.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 12333445667787766 3222 233456677776644322 111111122246999999999999999999999
Q ss_pred EEEEEcCCCceeeee-cCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679 168 LHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 168 i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~ 215 (235)
|.|++..+.+.++.. +.|...|+.+.|+|+.+++++.+ ....+..+..
T Consensus 305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999888877655 47889999999999999998876 4466665543
No 157
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=9.8e-21 Score=145.53 Aligned_cols=203 Identities=18% Similarity=0.274 Sum_probs=155.3
Q ss_pred ccccceeEEEeecC-----------CCeeEEEeccceEEEEecCcceeeeeeec--------------------------
Q 026679 12 GHKERVISLCMSPV-----------NDSFMSGSLDHSVRIWDLRVNACQGILRL-------------------------- 54 (235)
Q Consensus 12 ~h~~~v~~~~~~~~-----------~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-------------------------- 54 (235)
-|+..|+.+.--|. ...|+|++.|++||+||++.+..-..+..
T Consensus 367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~ 446 (1080)
T KOG1408|consen 367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG 446 (1080)
T ss_pred eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence 47777777766551 23589999999999999875211111100
Q ss_pred -------------cCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc---CCCeEEEe
Q 026679 55 -------------RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN---DGKSMLLT 118 (235)
Q Consensus 55 -------------~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~ 118 (235)
.+..+++++|+|++|++|..-|++++|++.+.+. ...+..|...|.|+.++. ..++|+++
T Consensus 447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~----~~~~eAHesEilcLeyS~p~~~~kLLASa 522 (1080)
T KOG1408|consen 447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY----TCFMEAHESEILCLEYSFPVLTNKLLASA 522 (1080)
T ss_pred cccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh----hhheecccceeEEEeecCchhhhHhhhhc
Confidence 0234589999999999999999999999998765 667889999999999985 34678999
Q ss_pred cCCCcEEEEEcCCCceeeeeccCC-------------------------------------------------CCCccee
Q 026679 119 TTNNNIYVLDAYGGEKRCGFSLEP-------------------------------------------------SPNTNTE 149 (235)
Q Consensus 119 ~~d~~i~~~d~~~~~~~~~~~~~~-------------------------------------------------~~~~i~~ 149 (235)
+.|.-|++||+...-.+. ..+.. ....+..
T Consensus 523 srdRlIHV~Dv~rny~l~-qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYD 601 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNYDLV-QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYD 601 (1080)
T ss_pred cCCceEEEEecccccchh-hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEE
Confidence 999999999985321100 00111 1145667
Q ss_pred eEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecC---CCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679 150 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG---NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 219 (235)
Q Consensus 150 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~ 219 (235)
|+..|..+++++++.|..|+|||+.+++..+.|++ |.+..-.+...|.|.|+++.. .++.++|+-+++..
T Consensus 602 m~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv 676 (1080)
T KOG1408|consen 602 MAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV 676 (1080)
T ss_pred eeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh
Confidence 78888888999999999999999999999999874 567788899999999999987 78999999776544
No 158
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2.4e-20 Score=140.43 Aligned_cols=205 Identities=16% Similarity=0.280 Sum_probs=158.4
Q ss_pred hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCC--EEEEEecCCeEEEEecc
Q 026679 8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGL--VFAVAMEAGAIKLFDSR 84 (235)
Q Consensus 8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~--~l~~~~~dg~v~i~d~~ 84 (235)
..++||++.|.++...|.|.+|++|+.||+|+||.+.++.++..+.... +.+++|+|.+. +||++.... +.+-+..
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~ 472 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPI 472 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCcc
Confidence 4578999999999999999999999999999999999999999998776 55699999664 444444333 4443321
Q ss_pred CC---------------------------------CCCCceeEeecCCCcceeEEEEccCCCeEEEecC---CCcEEEEE
Q 026679 85 SY---------------------------------DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLD 128 (235)
Q Consensus 85 ~~---------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d 128 (235)
-+ +...........|...|..+.|+..|.+|++... ...|.+++
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 11 0001112233457788999999999999999765 35699999
Q ss_pred cCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--c
Q 026679 129 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--S 206 (235)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~ 206 (235)
+........|. ...+.+.++.|+|...+|++++.. .|++||+...+.+..+......|..++.+|.|.-|+.++ +
T Consensus 553 LSK~~sQ~PF~--kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 553 LSKRKSQSPFR--KSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred cccccccCchh--hcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 98766554443 344669999999999999888765 699999998888888776777899999999999999998 6
Q ss_pred ceEEeeCCCC
Q 026679 207 VLSFWIPNPS 216 (235)
Q Consensus 207 ~i~iw~~~~~ 216 (235)
.+..+|++..
T Consensus 630 k~~WfDldls 639 (733)
T KOG0650|consen 630 KMCWFDLDLS 639 (733)
T ss_pred eeEEEEcccC
Confidence 6888888754
No 159
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=8.3e-20 Score=135.09 Aligned_cols=158 Identities=21% Similarity=0.366 Sum_probs=128.6
Q ss_pred hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeee-ccCCceEEEcCCCCEEEEEecCCeEEEEeccCC
Q 026679 8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR-LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSY 86 (235)
Q Consensus 8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 86 (235)
....+|.+..+.++.+|+.+.++|++.|+.+++|+ ..+.+.... .....++.|+|.| .++.|...|...+.|.++.
T Consensus 362 ~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~ 438 (626)
T KOG2106|consen 362 LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ 438 (626)
T ss_pred EEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccc
Confidence 34568999999999999999999999999999999 444444433 3445679999999 9999999999999999884
Q ss_pred CCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC
Q 026679 87 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 166 (235)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (235)
.. ........++++++|+|+|.+|+.|+.|+.|++|-+..+..........+..+|+.+.|++|+++|.+-+.|-
T Consensus 439 ~l-----v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~ 513 (626)
T KOG2106|consen 439 DL-----VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDY 513 (626)
T ss_pred ee-----EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCce
Confidence 42 3333337899999999999999999999999999987654433333333337899999999999999999999
Q ss_pred cEEEEEc
Q 026679 167 TLHAWNI 173 (235)
Q Consensus 167 ~i~v~d~ 173 (235)
.|..|..
T Consensus 514 eiLyW~~ 520 (626)
T KOG2106|consen 514 EILYWKP 520 (626)
T ss_pred EEEEEcc
Confidence 9999953
No 160
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=6.2e-21 Score=130.31 Aligned_cols=144 Identities=15% Similarity=0.221 Sum_probs=114.8
Q ss_pred EEEEEecCCeEEEEeccCCCCCC------ceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC--cee--ee
Q 026679 68 VFAVAMEAGAIKLFDSRSYDKGP------FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKR--CG 137 (235)
Q Consensus 68 ~l~~~~~dg~v~i~d~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~--~~ 137 (235)
++++|.++|.+.+||+.++...- ........|..+|.++.+.+.-..=+.++.+..+..|++... ... ..
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 46778889999999999863210 112334467889999999986666677888888999988643 221 12
Q ss_pred eccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679 138 FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 213 (235)
Q Consensus 138 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~ 213 (235)
..+. ...+..+.+-||++.+|+++.|+.|+||..++.+++..++-|...|.+++|+|+...+++++ ..|.+|++
T Consensus 247 ~~lk--npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITLK--NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEec--CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 2222 23478899999999999999999999999999999999999999999999999999999998 66999985
No 161
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.4e-20 Score=130.27 Aligned_cols=212 Identities=15% Similarity=0.236 Sum_probs=148.7
Q ss_pred chhhhhhhhcccccceeEEEeecC--CCeeEEEeccceEEEEecCcceeeeeeeccCCc---eEEE--cCCCCEEEEEec
Q 026679 2 YDNRILRYFKGHKERVISLCMSPV--NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP---TVAF--DQQGLVFAVAME 74 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~--~~~~~~l~~~~~ 74 (235)
.+++.++.|++|...++.+.|..+ ...+.+|+.||+|++||++.......+.....+ ..++ .-.++.+++|..
T Consensus 58 ~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE 137 (376)
T KOG1188|consen 58 GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTE 137 (376)
T ss_pred cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccc
Confidence 467899999999999999999873 467999999999999999987666555433322 2444 446778888753
Q ss_pred ----CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCcee-eeeccCCCCCcce
Q 026679 75 ----AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKR-CGFSLEPSPNTNT 148 (235)
Q Consensus 75 ----dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~ 148 (235)
+-.+.+||++..+.. .......|...|+++.|+| +.+.|++|+.||-|.+||+.....- .....-.+...|.
T Consensus 138 ~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~ 215 (376)
T KOG1188|consen 138 LTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIH 215 (376)
T ss_pred cccCceEEEEEEeccccch--hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceee
Confidence 678999999986641 2333467889999999999 6788999999999999998754211 1111112334467
Q ss_pred eeEEeCCC-cEEEEeCCCCcEEEEEcCCCce-------------------------------------------------
Q 026679 149 EATFTPDG-QYVVSGSGDGTLHAWNINTRNE------------------------------------------------- 178 (235)
Q Consensus 149 ~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~------------------------------------------------- 178 (235)
++.|..++ +.|.+-+......+|+++.+..
T Consensus 216 ~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~ 295 (376)
T KOG1188|consen 216 LIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFP 295 (376)
T ss_pred eeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEE
Confidence 77776655 3355555566666676654321
Q ss_pred ------------eeeecC-CCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679 179 ------------VACWNG-NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 179 ------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~ 215 (235)
+..+.+ |...|+++.|...+.++.+|+ |.+.+|..+.
T Consensus 296 ~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 296 LVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred eeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 122233 445677777877888999998 7899998543
No 162
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=3.7e-19 Score=131.71 Aligned_cols=199 Identities=15% Similarity=0.242 Sum_probs=152.9
Q ss_pred hhcccc-cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccC
Q 026679 9 YFKGHK-ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRS 85 (235)
Q Consensus 9 ~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~ 85 (235)
.|+.++ ..|.|++|.++|. ++||..+|.|.||+..+.+..+....|...+ ++.-.+|.++- |+.|+.|..||-.-
T Consensus 240 ~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y 317 (626)
T KOG2106|consen 240 IFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNY 317 (626)
T ss_pred ccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccc
Confidence 344433 6799999999875 8899999999999998887777666777555 66666776555 99999999998321
Q ss_pred CCCC------------------------------------CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEc
Q 026679 86 YDKG------------------------------------PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 129 (235)
Q Consensus 86 ~~~~------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 129 (235)
.+.. ........+|......++.+|+.+.+++++.|+.+++|+
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~- 396 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN- 396 (626)
T ss_pred cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-
Confidence 1100 001122335667788899999999999999999999999
Q ss_pred CCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cc
Q 026679 130 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SV 207 (235)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~ 207 (235)
..++....... .++.++.|+|.| .+|.|+..|...+.|..+...+..-.. ..+++.++|+|+|.+|+.|+ +.
T Consensus 397 -~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 397 -DHKLEWTKIIE---DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNH 470 (626)
T ss_pred -CCceeEEEEec---CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCe
Confidence 44444333332 458899999999 999999999999999988666555444 78999999999999999999 66
Q ss_pred eEEeeCCCC
Q 026679 208 LSFWIPNPS 216 (235)
Q Consensus 208 i~iw~~~~~ 216 (235)
|+||.++..
T Consensus 471 iyiy~Vs~~ 479 (626)
T KOG2106|consen 471 IYIYRVSAN 479 (626)
T ss_pred EEEEEECCC
Confidence 999988643
No 163
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=5.1e-20 Score=132.62 Aligned_cols=122 Identities=13% Similarity=0.153 Sum_probs=101.4
Q ss_pred hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecC--------c--------ceeeeeeeccCCce--EEEcCCCC
Q 026679 6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR--------V--------NACQGILRLRGRPT--VAFDQQGL 67 (235)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~--------~--------~~~~~~~~~~~~~~--~~~~~~~~ 67 (235)
.+..|..|.+.|+++.|+|+|+.||+|+.+|.|.+|... + ......+.+|...+ ++|+|++.
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~ 136 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN 136 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc
Confidence 456788999999999999999999999999999999765 2 11233344444444 99999999
Q ss_pred EEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC
Q 026679 68 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 131 (235)
Q Consensus 68 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 131 (235)
.+++++-|..+++||+..++. ......|...+..++|.|-++++++-+.|...+.+.+..
T Consensus 137 ~l~s~s~dns~~l~Dv~~G~l----~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 137 FLVSGSVDNSVRLWDVHAGQL----LAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred eeeeeeccceEEEEEecccee----EeeccccccccceeecchhhhhhhhhccCcccceeeeee
Confidence 999999999999999998876 667788999999999999999999988888766666543
No 164
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=127.72 Aligned_cols=198 Identities=18% Similarity=0.260 Sum_probs=148.6
Q ss_pred ceeEEEeecCCCeeEEEeccceEEEEecCcc------------eeeeeeeccC-Cce--EEE-------cCCCCEEEEEe
Q 026679 16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVN------------ACQGILRLRG-RPT--VAF-------DQQGLVFAVAM 73 (235)
Q Consensus 16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~------------~~~~~~~~~~-~~~--~~~-------~~~~~~l~~~~ 73 (235)
-...+.|+|||..|++-+.|..+.+|++... +....++... ..+ .+| .|+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 3456899999999999999999999997421 0111122111 222 333 36778999999
Q ss_pred cCCeEEEEeccCCCCCCceeEeecCCCc---ceeEEEEccCCCeEEEecCCCcEEEEEc-CCCceeeeeccCCC-----C
Q 026679 74 EAGAIKLFDSRSYDKGPFDTFLVGGDTA---EVCDIKFSNDGKSMLLTTTNNNIYVLDA-YGGEKRCGFSLEPS-----P 144 (235)
Q Consensus 74 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d~~i~~~d~-~~~~~~~~~~~~~~-----~ 144 (235)
.+.-|++||.-+++... .+....|.. ...+++|+|||.+|++| ....|++||+ |.|.....+....+ .
T Consensus 131 r~~PIh~wdaftG~lra--Sy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRA--SYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred ccCceeeeecccccccc--chhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccc
Confidence 99999999999887522 222223333 34589999999988865 5678999999 66654433332222 4
Q ss_pred CcceeeEEeC-CCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCC
Q 026679 145 NTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPS 216 (235)
Q Consensus 145 ~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~ 216 (235)
+-+.+++|+| +...+++|+....+-+|.-..+.++..+-+|.+.|+.+.|.++|+.|.+|+ ..|-.||++..
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 6788999999 455899999999999998889999999999999999999999999999998 44999999754
No 165
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=2.8e-19 Score=138.35 Aligned_cols=202 Identities=16% Similarity=0.189 Sum_probs=136.1
Q ss_pred hhhhcccccceeEEEeecCCCeeEEEecc---ceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEe-cCCeEEEE
Q 026679 7 LRYFKGHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAM-EAGAIKLF 81 (235)
Q Consensus 7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~-~dg~v~i~ 81 (235)
.+.+..|...+.+.+|+|+|+.|+.++.+ ..|++||+.+++......... ....+|+|+|+.|+.+. .+|.+.+|
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 275 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIY 275 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEE
Confidence 45566788889999999999999887654 369999998876433322222 23489999999888765 67876666
Q ss_pred --eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEec-CCCcEEEEEcCCCc-eeeeeccCCCCCcceeeEEeCCCc
Q 026679 82 --DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDGQ 157 (235)
Q Consensus 82 --d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~ 157 (235)
|+.+.. ...+..+...+....|+|||+.|+..+ .++...+|++.... ..... .+.. ....|+|+|+
T Consensus 276 ~~d~~~~~-----~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l---~~~~--~~~~~SpDG~ 345 (429)
T PRK01742 276 VMGANGGT-----PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV---GGRG--YSAQISADGK 345 (429)
T ss_pred EEECCCCC-----eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---cCCC--CCccCCCCCC
Confidence 554433 233444556678899999999877665 46777888764322 12222 1222 3478999999
Q ss_pred EEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEee---CCCCCCCCC
Q 026679 158 YVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI---PNPSSNSTD 221 (235)
Q Consensus 158 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~---~~~~~~~~~ 221 (235)
+|+..+.++ +.+||+.+++.......+ ....+.|+|+|++|+.++ +...+|. .++.....+
T Consensus 346 ~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 346 TLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred EEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 998887765 666999888754322222 345678999999999886 5555554 444444444
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=3e-19 Score=136.67 Aligned_cols=211 Identities=16% Similarity=0.254 Sum_probs=161.4
Q ss_pred chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcc--------eeeeeeecc------------------
Q 026679 2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN--------ACQGILRLR------------------ 55 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--------~~~~~~~~~------------------ 55 (235)
.+|.+++.+++|.+.|.|++|+.||+.+|+|+.|..|.+|+.+-. ..++.....
T Consensus 41 ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS 120 (1081)
T KOG1538|consen 41 SDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWS 120 (1081)
T ss_pred CCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccC
Confidence 468899999999999999999999999999999999999986421 111111110
Q ss_pred -----------C--CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCC-----CeEEE
Q 026679 56 -----------G--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-----KSMLL 117 (235)
Q Consensus 56 -----------~--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~ 117 (235)
. ..+++|..||.+++.|-.+|+|.+-+..... ........+.+++|.+++|+|.. ..+++
T Consensus 121 ~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe--k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 121 PEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE--KVKIERPGGSNSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred hhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCc--ceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence 0 1137889999999999999999987654332 22333445678899999999953 46777
Q ss_pred ecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecC
Q 026679 118 TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR 197 (235)
Q Consensus 118 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 197 (235)
.....++.+|.+.....-+...+. -...|+.+.|+|.+++.|+.|+.+.+|. +.|-.+.++......|+.++..|+
T Consensus 199 ~DW~qTLSFy~LsG~~Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PN 274 (1081)
T KOG1538|consen 199 ADWGQTLSFYQLSGKQIGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPN 274 (1081)
T ss_pred EeccceeEEEEecceeecccccCC---CCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccC
Confidence 888888888887543322222222 2356789999999999999999999997 577777777767789999999999
Q ss_pred CCEEEEcc--cceEEeeCCCCCC
Q 026679 198 RAMFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 198 ~~~l~~~~--~~i~iw~~~~~~~ 218 (235)
+++++.|+ |++..|++-..+.
T Consensus 275 sQ~v~~GCqDGTiACyNl~fSTV 297 (1081)
T KOG1538|consen 275 SQYVVVGCQDGTIACYNLIFSTV 297 (1081)
T ss_pred CceEEEEEccCeeehhhhHHhHh
Confidence 99999998 8899998765443
No 167
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.84 E-value=9.4e-18 Score=119.81 Aligned_cols=197 Identities=12% Similarity=0.213 Sum_probs=145.3
Q ss_pred ceeEEEeecCCCeeEEEeccc--eEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCcee
Q 026679 16 RVISLCMSPVNDSFMSGSLDH--SVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT 93 (235)
Q Consensus 16 ~v~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 93 (235)
.|.-+-|+ ..++|..+.+. .+++.+++.+..+..+..+. .++++--+-+.|+++-.+. |+|||+++.+.... .
T Consensus 48 ~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt-~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhT-I 122 (391)
T KOG2110|consen 48 SIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPT-SILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHT-I 122 (391)
T ss_pred EEEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEecCC-ceEEEEEccceEEEEEccc-EEEEecccceeehh-h
Confidence 34455555 34555555443 48888887777766665543 2344444556777777664 99999998775111 1
Q ss_pred EeecCCCcceeEEEEccCCCeEEEec--CCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCc-EEE
Q 026679 94 FLVGGDTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT-LHA 170 (235)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~v 170 (235)
.....+...+.++++++.+.+++.-+ ..|.|.+||+.+-+....+. .|.+.+.+++|+++|.+||++++.|+ |||
T Consensus 123 ~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRV 200 (391)
T KOG2110|consen 123 ETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRV 200 (391)
T ss_pred hccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEE
Confidence 12224556677777777777888754 37899999999888776655 67788999999999999999999997 889
Q ss_pred EEcCCCceeeeecCC--CcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679 171 WNINTRNEVACWNGN--IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 219 (235)
Q Consensus 171 ~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~ 219 (235)
+.+.+|+.+.++..- ...|.+++|+|++.+|++.+ ++|.++.++.....
T Consensus 201 f~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~ 253 (391)
T KOG2110|consen 201 FSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNN 253 (391)
T ss_pred EEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccC
Confidence 999999999998643 34789999999999999888 78999999766533
No 168
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.2e-18 Score=118.17 Aligned_cols=202 Identities=14% Similarity=0.152 Sum_probs=149.1
Q ss_pred hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCccee---------------eeeeeccCCceEEEcCCCCEEEEE
Q 026679 8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC---------------QGILRLRGRPTVAFDQQGLVFAVA 72 (235)
Q Consensus 8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~~~ 72 (235)
-..++|.++|..++|. ..+|++|+ ||.|+=|..+.... ....+.+.++.+.+.|..+-++.+
T Consensus 56 v~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A 132 (325)
T KOG0649|consen 56 VPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA 132 (325)
T ss_pred eeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe
Confidence 3458999999999998 45777776 59999887643211 112334456668889988777777
Q ss_pred ecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC--------
Q 026679 73 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP-------- 144 (235)
Q Consensus 73 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-------- 144 (235)
+.|+.++-||+++++. ...+.+|...+.++.--.....+++|++||++++||.++++.++.+....++
T Consensus 133 gGD~~~y~~dlE~G~i----~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g 208 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDGRI----QREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG 208 (325)
T ss_pred cCCeEEEEEEecCCEE----EEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC
Confidence 8999999999999875 7788999999999988555556999999999999999999988877654433
Q ss_pred CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEc-ccceEEeeCCCCCCCCC
Q 026679 145 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA-SSVLSFWIPNPSSNSTD 221 (235)
Q Consensus 145 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~i~iw~~~~~~~~~~ 221 (235)
..|.++ .-+..+|++|+. ..+.+|.++..++...+. -..++..+.|..| ..++.| ++.+.-|.+.+......
T Consensus 209 ~wigal--a~~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~Gvl~a~i 281 (325)
T KOG0649|consen 209 KWIGAL--AVNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVHLVDFVDD-CVLIGGEGNHVQSYTLNGVLQANI 281 (325)
T ss_pred ceeEEE--eccCceEEecCC-CceeEEeccCCCceEEEe-cccceeEeeeecc-eEEEeccccceeeeeeccEEEEec
Confidence 234444 445668887765 468999999999888876 4467888888654 344444 35688888776443333
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=9.3e-19 Score=121.32 Aligned_cols=204 Identities=14% Similarity=0.211 Sum_probs=149.8
Q ss_pred hhhhhhhc-ccccceeEEEeecCCCeeEEEeccceEEEEecCccee-eeeeeccC-------CceEEEcC--CCCEEEEE
Q 026679 4 NRILRYFK-GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC-QGILRLRG-------RPTVAFDQ--QGLVFAVA 72 (235)
Q Consensus 4 ~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~-------~~~~~~~~--~~~~l~~~ 72 (235)
-+++..+. .+-+.|.|+.|.|++..+++-. |..|.+|+++.... ...+.... ...-+|+| +++.+++.
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence 35566665 4667999999999998888876 78899999987765 33333221 22367888 66666554
Q ss_pred ecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCC-eEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeE
Q 026679 73 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT 151 (235)
Q Consensus 73 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~ 151 (235)
.|+++..||+++... .......|...|..+.|+|+.+ +|+++++||.|++||.|.-+. ....+++|...+.++.
T Consensus 191 -~d~tl~~~D~RT~~~---~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~-pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 191 -SDSTLQFWDLRTMKK---NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF-PVQELPGHSHWVWAVR 265 (370)
T ss_pred -CCCcEEEEEccchhh---hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc-cccccCCCceEEEEEE
Confidence 578999999998664 1222346777899999999765 577889999999999987553 2446677888999999
Q ss_pred EeCC-CcEEEEeCCCCcEEEEEcCCC-----------------------------ceeeeecCCCcceeEEEeecCCCEE
Q 026679 152 FTPD-GQYVVSGSGDGTLHAWNINTR-----------------------------NEVACWNGNIGVVACLKWAPRRAMF 201 (235)
Q Consensus 152 ~~~~-~~~l~~~~~dg~i~v~d~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l 201 (235)
|+|. .++|++|+.|..+.+|....- ..+.++..|...|++++|+.-..++
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI 345 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence 9994 677889999999999875321 1234566789999999999877766
Q ss_pred EEc-c--cceEEeeC
Q 026679 202 VAA-S--SVLSFWIP 213 (235)
Q Consensus 202 ~~~-~--~~i~iw~~ 213 (235)
.++ + |.+.|=.+
T Consensus 346 FASLSYDGRviIs~V 360 (370)
T KOG1007|consen 346 FASLSYDGRVIISSV 360 (370)
T ss_pred EEEeccCceEEeecC
Confidence 554 4 55555443
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=1e-19 Score=131.11 Aligned_cols=191 Identities=16% Similarity=0.247 Sum_probs=146.8
Q ss_pred ccceeEEEeecCCC-eeEEEeccceEEEEecCccee---------eeeeeccC--CceEEEcCCCCEEEEEecCCeEEEE
Q 026679 14 KERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNAC---------QGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLF 81 (235)
Q Consensus 14 ~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~---------~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v~i~ 81 (235)
..+|..+.|.++.. .++||+.|..|++|.+..+.. ...+..|. ++++.|+|+|++|++|+.+|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 36899999999775 999999999999998865422 22334444 4559999999999999999999999
Q ss_pred eccCC------------CCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCccee
Q 026679 82 DSRSY------------DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE 149 (235)
Q Consensus 82 d~~~~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~ 149 (235)
-...- +........+.+|...+..++|+|++.++++++.|..+++||+..|+....+..+ ...+..
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh--~~yvqg 170 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH--EHYVQG 170 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc--ccccce
Confidence 76611 1112234556789999999999999999999999999999999999988766544 455999
Q ss_pred eEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec--------C-----------C----CcceeEEEeecCCCEEEEccc
Q 026679 150 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--------G-----------N----IGVVACLKWAPRRAMFVAASS 206 (235)
Q Consensus 150 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--------~-----------~----~~~v~~~~~~~~~~~l~~~~~ 206 (235)
++|.|-++++++-+.|...+.+++...+.+.... . | ..-...++|+|+|.++++.+|
T Consensus 171 vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 171 VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred eecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 9999999999999988877777765433221111 0 1 123467889999999998863
No 171
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.83 E-value=5.7e-19 Score=122.45 Aligned_cols=204 Identities=15% Similarity=0.187 Sum_probs=149.4
Q ss_pred ccccceeEEEeecCC-----CeeEEEeccceEEEEecCcce----eeeeeeccC-------CceEEEcC-CCCEEEEEec
Q 026679 12 GHKERVISLCMSPVN-----DSFMSGSLDHSVRIWDLRVNA----CQGILRLRG-------RPTVAFDQ-QGLVFAVAME 74 (235)
Q Consensus 12 ~h~~~v~~~~~~~~~-----~~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~-------~~~~~~~~-~~~~l~~~~~ 74 (235)
.|.-+++.+.|.|+. .+|||++ ..+|+|.+...+ +...+..+. ..+..|+. +.+++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 578899999999975 3466654 379999986321 111121111 22355655 6688999999
Q ss_pred CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCC-CeEEEecCCCcEEEEEcCCCceeeee-ccCCCCCcceeeEE
Q 026679 75 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATF 152 (235)
Q Consensus 75 dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~i~~~~~ 152 (235)
|-+..+||++++.. ......+..|...|..++|...+ +.+++.+.||.+++||+|..+.-..+ +......+...++|
T Consensus 172 DTTCTiWdie~~~~-~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 172 DTTCTIWDIETGVS-GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred cCeEEEEEEeeccc-cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999998632 22345677899999999999855 46888999999999999987654333 33332467888999
Q ss_pred eC-CCcEEEEeCCC-CcEEEEEcCC-CceeeeecCCCcceeEEEeecCC-CEEEEcc--cceEEeeCCCCCC
Q 026679 153 TP-DGQYVVSGSGD-GTLHAWNINT-RNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 153 ~~-~~~~l~~~~~d-g~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~~i~iw~~~~~~~ 218 (235)
++ |-+++|+-..| ..|.+.|++. ..++..+++|.+.|.+++|.|.. ..|++++ ...-+||+.....
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 88 55677776554 5699999985 56788999999999999999964 5677776 5599999976443
No 172
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.4e-19 Score=135.46 Aligned_cols=213 Identities=17% Similarity=0.178 Sum_probs=155.2
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeee-ccCCce--EEEcC--CCCEEEEEecCCeEE
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR-LRGRPT--VAFDQ--QGLVFAVAMEAGAIK 79 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~--~~~~~--~~~~l~~~~~dg~v~ 79 (235)
.+.++|.||++.|+|+.|+.+|.+|++||.|-.+.|||.-..+.++.+. +|..++ +.|-| +.+.+++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 4567889999999999999999999999999999999998888777775 344444 78888 667899999999999
Q ss_pred EEeccCCCCC------CceeEeecCCCcceeEEEEccCC-CeEEEecCCCcEEEEEcCCCceeee--------eccCCCC
Q 026679 80 LFDSRSYDKG------PFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCG--------FSLEPSP 144 (235)
Q Consensus 80 i~d~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~--------~~~~~~~ 144 (235)
+||+...+.. .........|...|..++-.|++ ..+.++++||+|+-||++....-.. .......
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 9999863321 12234456788899999999988 7899999999999999986422110 0111112
Q ss_pred CcceeeEEeCC-CcEEEEeCCCCcEEEEEcCC--------Cc----------eeeee-cCCC-----------cceeEEE
Q 026679 145 NTNTEATFTPD-GQYVVSGSGDGTLHAWNINT--------RN----------EVACW-NGNI-----------GVVACLK 193 (235)
Q Consensus 145 ~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~--------~~----------~~~~~-~~~~-----------~~v~~~~ 193 (235)
-...++.++|. ..+|++|+.|-..++||.+. +. ++.-+ .+|. ..++-+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 33567889994 56889999999999999532 11 11111 1221 1256788
Q ss_pred eecCCCEEEEc-c-cceEEeeCCCCC
Q 026679 194 WAPRRAMFVAA-S-SVLSFWIPNPSS 217 (235)
Q Consensus 194 ~~~~~~~l~~~-~-~~i~iw~~~~~~ 217 (235)
|+|+|.-|+.. + ..+++++++..+
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 99998655544 4 559999987543
No 173
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=1.3e-17 Score=128.89 Aligned_cols=205 Identities=17% Similarity=0.206 Sum_probs=139.0
Q ss_pred hhhcccccceeEEEeecCCCeeEEEec---cceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEE-ecCC--eEEE
Q 026679 8 RYFKGHKERVISLCMSPVNDSFMSGSL---DHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVA-MEAG--AIKL 80 (235)
Q Consensus 8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~dg--~v~i 80 (235)
+.+..+...+.+.+|+|||+.|+..+. +..+.+|++.+++......... ....+|+|||+.|+.. ..+| .|.+
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 444456678899999999998886543 4579999998876544433333 2348999999988765 3444 5888
Q ss_pred EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC-C--cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679 81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-N--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 157 (235)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (235)
||+.++.. ..+..+...+....|+|||+.|+..+.+ + .|+.+|+.+++... +.... .......|+|||+
T Consensus 272 ~d~~tg~~-----~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~--~~~~~~~~SpDG~ 343 (429)
T PRK03629 272 MDLASGQI-----RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEG--SQNQDADVSSDGK 343 (429)
T ss_pred EECCCCCE-----EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-eecCC--CCccCEEECCCCC
Confidence 99877543 2233334567789999999988877654 3 46666776665432 22222 2355689999999
Q ss_pred EEEEeCCC---CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--c---ceEEeeCCCCCCCCCC
Q 026679 158 YVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--S---VLSFWIPNPSSNSTDE 222 (235)
Q Consensus 158 ~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~---~i~iw~~~~~~~~~~~ 222 (235)
+|+..+.+ ..|.+||+.+++.. .+... .......|+|||++|+.++ + .+.++++++.....+.
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 414 (429)
T ss_pred EEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECc
Confidence 99876543 35888999877643 33321 2345678999999998886 2 3778888776655554
No 174
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=3.3e-19 Score=135.72 Aligned_cols=197 Identities=16% Similarity=0.203 Sum_probs=141.7
Q ss_pred cceeEEEeec-CCCeeEEEeccceEEEEecCcc-------eeeeeeeccCC--ceEEEcC-CCCEEEEEecCCeEEEEec
Q 026679 15 ERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVN-------ACQGILRLRGR--PTVAFDQ-QGLVFAVAMEAGAIKLFDS 83 (235)
Q Consensus 15 ~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~--~~~~~~~-~~~~l~~~~~dg~v~i~d~ 83 (235)
..|+.+.|.| |...||.++.||.|++|.+..+ .....+..|.. ..+.|+| -...|++++.|.+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 5799999999 6688999999999999998654 23444555554 4499999 5678999999999999999
Q ss_pred cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCcee-eeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679 84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR-CGFSLEPSPNTNTEATFTPDGQYVVSG 162 (235)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (235)
.+... ...+.+|...|..++|+|+|+.+++.+.||+|++|..++++.. +.-..... ..-..+.|.-+|+++++.
T Consensus 708 ~~~~~----~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg-tRgARi~wacdgr~viv~ 782 (1012)
T KOG1445|consen 708 ANAKL----YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVG-TRGARILWACDGRIVIVV 782 (1012)
T ss_pred hhhhh----hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCcc-CcceeEEEEecCcEEEEe
Confidence 99876 6678899999999999999999999999999999999876543 22121111 334568899999999887
Q ss_pred CCC----CcEEEEEcCCC--ceeeeecCC-CcceeEEEeecCCCEEEEcc-cc--eEEeeCCCC
Q 026679 163 SGD----GTLHAWNINTR--NEVACWNGN-IGVVACLKWAPRRAMFVAAS-SV--LSFWIPNPS 216 (235)
Q Consensus 163 ~~d----g~i~v~d~~~~--~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~~--i~iw~~~~~ 216 (235)
+.| ..|.+||..+. ..+.+..-. ...+.--.+.+|...|...+ |+ +.+|.+-..
T Consensus 783 Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 783 GFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred cccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 765 45888887643 333322111 11122223455666655554 44 777776443
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=5.1e-19 Score=127.29 Aligned_cols=162 Identities=14% Similarity=0.186 Sum_probs=133.1
Q ss_pred eeeccCCce--EEEcC-CCCEEEEEecCCeEEEEeccCCCCCC---ceeEeecCCCcceeEEEEccC-CCeEEEecCCCc
Q 026679 51 ILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGP---FDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNN 123 (235)
Q Consensus 51 ~~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~ 123 (235)
.+.+|..++ ++|+| +...+|+|+.|.+|.+|++....... .....+.+|...|..++|+|. .+.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 344566666 88999 77889999999999999987644321 235667899999999999995 567889999999
Q ss_pred EEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCc-ceeEEEeecCCCEEE
Q 026679 124 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG-VVACLKWAPRRAMFV 202 (235)
Q Consensus 124 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~ 202 (235)
|.+|++.+++.+..+. |+..|.++.|+-||.+|++.+.|..|+|||.++++.+..-.+|.+ .-..+.|-.++.++.
T Consensus 156 v~iWnv~tgeali~l~---hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD---HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred EEEEeccCCceeeecC---CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 9999999999776544 778899999999999999999999999999999999988888865 556677888998555
Q ss_pred Ecc-----cceEEeeCCC
Q 026679 203 AAS-----SVLSFWIPNP 215 (235)
Q Consensus 203 ~~~-----~~i~iw~~~~ 215 (235)
+|- ..+-+||.+.
T Consensus 233 TGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNN 250 (472)
T ss_pred eccccccccceeccCccc
Confidence 552 4599998764
No 176
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.82 E-value=3.4e-18 Score=138.30 Aligned_cols=218 Identities=20% Similarity=0.276 Sum_probs=160.9
Q ss_pred hhhhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcc-------eeeeeeeccC--CceEEEcCCCCEEEEE
Q 026679 3 DNRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVN-------ACQGILRLRG--RPTVAFDQQGLVFAVA 72 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~--~~~~~~~~~~~~l~~~ 72 (235)
+|.++..+..|+..|..++.++.. .+|+|||.||+|++||.+.- +...++...+ ..++...+.+..+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 477889999999999999998765 89999999999999998642 2223333222 3347888899999999
Q ss_pred ecCCeEEEEeccCCCCCCce-----eEeecCCCcceeEEEEcc-CCC-eEEEecCCCcEEEEEcCCCceeeeeccCCCCC
Q 026679 73 MEAGAIKLFDSRSYDKGPFD-----TFLVGGDTAEVCDIKFSN-DGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN 145 (235)
Q Consensus 73 ~~dg~v~i~d~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~-~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 145 (235)
+.||.|++.++......... ..........|..-++.. .+. .++.+..-+.|..||.+........+.....+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 99999999998763221110 111111122233334433 233 67888889999999999888777777777778
Q ss_pred cceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec-CCCcceeEEEeecCC---CEEEEcc----cceEEeeCCCCC
Q 026679 146 TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIGVVACLKWAPRR---AMFVAAS----SVLSFWIPNPSS 217 (235)
Q Consensus 146 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~---~~l~~~~----~~i~iw~~~~~~ 217 (235)
.|++++.+|.+++++.|+..|.+.+||++=+.++..+. .+..+|..+..+|-. ...++++ +.+.+|++.++.
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 89999999999999999999999999999888888775 334678888877733 4555554 559999998775
Q ss_pred CCC
Q 026679 218 NST 220 (235)
Q Consensus 218 ~~~ 220 (235)
.+.
T Consensus 1277 ~~~ 1279 (1431)
T KOG1240|consen 1277 RQT 1279 (1431)
T ss_pred ceE
Confidence 543
No 177
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=1.3e-17 Score=129.26 Aligned_cols=207 Identities=20% Similarity=0.260 Sum_probs=140.8
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEecc---ceEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEE-EecCC--e
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAV-AMEAG--A 77 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~-~~~dg--~ 77 (235)
...+.+..|...+.+.+|+|||+.|+..+.+ ..|++||+.+++........... ..+|+|+|+.++. .+.+| .
T Consensus 194 ~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 194 YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 3344566677789999999999998887643 46999999887665443333333 4899999987764 45555 5
Q ss_pred EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CCc--EEEEEcCCCceeeeeccCCCCCcceeeEEeC
Q 026679 78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNN--IYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 154 (235)
Q Consensus 78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 154 (235)
|++||+.+++. ..+..+.......+|+|||+.|+..+. ++. |+++|+.+++... +.... ......+|+|
T Consensus 274 Iy~~d~~~g~~-----~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g--~~~~~~~~Sp 345 (433)
T PRK04922 274 IYVMDLGSRQL-----TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQG--NYNARASVSP 345 (433)
T ss_pred EEEEECCCCCe-----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCC--CCccCEEECC
Confidence 88899877553 223334444567899999998887764 444 7777877765433 22222 2244689999
Q ss_pred CCcEEEEeCCCC---cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-----cceEEeeCCCCCCCCC
Q 026679 155 DGQYVVSGSGDG---TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNSTD 221 (235)
Q Consensus 155 ~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~iw~~~~~~~~~~ 221 (235)
+|++|+..+.++ .|.+||+.+++.. .+. +........|+|||++++..+ +.+.+++.++.....+
T Consensus 346 DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 346 DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRL 418 (433)
T ss_pred CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEc
Confidence 999998765432 5999999877654 333 223455679999999888765 3477778776544433
No 178
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=1.5e-18 Score=129.58 Aligned_cols=182 Identities=15% Similarity=0.209 Sum_probs=139.1
Q ss_pred hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec--cCCceEEEcCCCCEEEEEecCCeEEE
Q 026679 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL--RGRPTVAFDQQGLVFAVAMEAGAIKL 80 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~v~i 80 (235)
.++..+.+.+|.+.|.|-.|+|+|.-|++++.||.|++|. ++|-...++.. ..+.+++|.|+.+.++.+.. +.+.+
T Consensus 93 ~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~I 170 (737)
T KOG1524|consen 93 SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISI 170 (737)
T ss_pred cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEE
Confidence 4677788999999999999999999999999999999998 45544444332 33556999998877666544 35555
Q ss_pred EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679 81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 160 (235)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (235)
=.+..... ......|++-|.++.|++..+.+++|++|-..++||.. |..+ +....|..+|++++|.|+ +.++
T Consensus 171 KpL~~n~k----~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~L--f~S~~~ey~ITSva~npd-~~~~ 242 (737)
T KOG1524|consen 171 KPLAANSK----IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANL--FTSAAEEYAITSVAFNPE-KDYL 242 (737)
T ss_pred eecccccc----eeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Cccc--ccCChhccceeeeeeccc-ccee
Confidence 45544333 66788999999999999999999999999999999964 4444 345566678999999999 5555
Q ss_pred EeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEccc
Q 026679 161 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 206 (235)
Q Consensus 161 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 206 (235)
.++.+ +++ --+...+.|..++|++||..++.|.+
T Consensus 243 v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 243 LWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred eeeee-eee-----------ecCCCccceEEEEEcCCCceeecccc
Confidence 55432 233 11234578999999999999998873
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=6.2e-18 Score=117.30 Aligned_cols=204 Identities=17% Similarity=0.240 Sum_probs=147.7
Q ss_pred hhhcccccceeEEEeecCC-CeeEEEecc-------ceEEEEecCcce---------eeeeee---ccCCceEEEcCCCC
Q 026679 8 RYFKGHKERVISLCMSPVN-DSFMSGSLD-------HSVRIWDLRVNA---------CQGILR---LRGRPTVAFDQQGL 67 (235)
Q Consensus 8 ~~~~~h~~~v~~~~~~~~~-~~l~s~~~d-------~~i~vwd~~~~~---------~~~~~~---~~~~~~~~~~~~~~ 67 (235)
+.|..|.+.|+.++-+|-. +.|+|+..+ ..+.||.+.... ++..+. .....++.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 4567788999999999955 566666542 246799886432 222232 12346799999999
Q ss_pred EEEEEecCCeEEEEeccCCCCCCcee--EeecCCCcceeEEEEcc--CCCeEEEecCCCcEEEEEcCCCceeeeeccCCC
Q 026679 68 VFAVAMEAGAIKLFDSRSYDKGPFDT--FLVGGDTAEVCDIKFSN--DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS 143 (235)
Q Consensus 68 ~l~~~~~dg~v~i~d~~~~~~~~~~~--~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 143 (235)
.+++-. |..|.+|++.......... .....+....++-+|+| +|+.+++ ..|+++..||+|+.+....+. ..|
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~-dAH 213 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIE-DAH 213 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchh-hhh
Confidence 888776 7899999998766421111 11122456678889999 6776655 568899999999877665544 345
Q ss_pred CCcceeeEEeCCCc-EEEEeCCCCcEEEEEcCC-CceeeeecCCCcceeEEEeecC-CCEEEEcc--cceEEeeCC
Q 026679 144 PNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPR-RAMFVAAS--SVLSFWIPN 214 (235)
Q Consensus 144 ~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~--~~i~iw~~~ 214 (235)
...+..+.|+|+.+ +|++|+.||.|++||.+. ..++.++.+|...|+++.|+|. .+++++++ ..+.+|...
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 56799999999865 568899999999999985 5678899999999999999995 45566666 447777654
No 180
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.2e-17 Score=129.46 Aligned_cols=212 Identities=16% Similarity=0.198 Sum_probs=165.7
Q ss_pred chhhhhhhhcccccceeEEEeecCC---CeeEEEeccceEEEEecCcceeeeeeecc-----------------------
Q 026679 2 YDNRILRYFKGHKERVISLCMSPVN---DSFMSGSLDHSVRIWDLRVNACQGILRLR----------------------- 55 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~d~~i~vwd~~~~~~~~~~~~~----------------------- 55 (235)
.+|+++..+.+|..+++.+.+.|.. .++++++.||.|++||...+..++++..+
T Consensus 45 ~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~ 124 (792)
T KOG1963|consen 45 ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSV 124 (792)
T ss_pred chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeec
Confidence 5889999999999999999998864 35779999999999997765544433211
Q ss_pred --------------------------------------------------------------------------------
Q 026679 56 -------------------------------------------------------------------------------- 55 (235)
Q Consensus 56 -------------------------------------------------------------------------------- 55 (235)
T Consensus 125 ~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~H 204 (792)
T KOG1963|consen 125 EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHH 204 (792)
T ss_pred ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhh
Confidence
Q ss_pred --CCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc
Q 026679 56 --GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE 133 (235)
Q Consensus 56 --~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 133 (235)
...+.+++|++++++++..||.|.+|.--..+........+.-|...|.+++|+++|.+|++|+..+.+.+|.+.+++
T Consensus 205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred cccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 123478999999999999999999997544222233345566788999999999999999999999999999999988
Q ss_pred eeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC-----------CcceeEEEeecCCCEEE
Q 026679 134 KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-----------IGVVACLKWAPRRAMFV 202 (235)
Q Consensus 134 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~ 202 (235)
.. -++.-.++|..+.++||+.+.+...+|+.|.+....+.....++.+- .+-.+.++++|.-+.++
T Consensus 285 kq---fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 285 KQ---FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred cc---cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 33 23444577999999999999999999999999998776655544332 33467788999555555
Q ss_pred Ecc--cceEEeeCCCC
Q 026679 203 AAS--SVLSFWIPNPS 216 (235)
Q Consensus 203 ~~~--~~i~iw~~~~~ 216 (235)
-.+ +.+.+||+-+.
T Consensus 362 ln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTD 377 (792)
T ss_pred ecCCCceEEEEecccc
Confidence 554 88999998654
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=5.1e-18 Score=115.09 Aligned_cols=198 Identities=16% Similarity=0.222 Sum_probs=144.1
Q ss_pred ccceeEEEeecCCCeeEEEeccceEEEEecCcc----------eeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEE
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN----------ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLF 81 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~----------~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~ 81 (235)
...|.+-+|+|.+++|++|+.+|.|.+..+..- ..+...+.|..++ ++|. ..+|++|+. |.|+-|
T Consensus 10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw 86 (325)
T KOG0649|consen 10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGW 86 (325)
T ss_pred HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEe
Confidence 356778899999999999999999999987531 2333345666666 5665 455666654 999999
Q ss_pred eccCCCC----CCceeEeecC-----CCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEE
Q 026679 82 DSRSYDK----GPFDTFLVGG-----DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 152 (235)
Q Consensus 82 d~~~~~~----~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~ 152 (235)
..+.... .+........ .--.|+++...|..+.+++++.|+.++.||+++|+....++. |...+.++.-
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG--HtDYvH~vv~ 164 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG--HTDYVHSVVG 164 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC--Ccceeeeeee
Confidence 8765432 1111111111 123578899999888888888999999999999998887765 5566888888
Q ss_pred eCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC----------CcceeEEEeecCCCEEEEcc-cceEEeeCCCCCC
Q 026679 153 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN----------IGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSN 218 (235)
Q Consensus 153 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~~ 218 (235)
-.....+++|++||++++||.++++.+..+... ...|.+++ -+..++++|+ ..+.+|.+...+.
T Consensus 165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrsse~ 239 (325)
T KOG0649|consen 165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSSES 239 (325)
T ss_pred cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCCCc
Confidence 666667899999999999999999988776422 12344444 4667888888 6699999976543
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=8.5e-18 Score=116.68 Aligned_cols=196 Identities=15% Similarity=0.256 Sum_probs=144.6
Q ss_pred ccccceeEEEeec-CCCeeEEEeccceEEEEecCccee---eeeeeccCCce--EEEcCCC-CEEEEEecCCeEEEEecc
Q 026679 12 GHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNAC---QGILRLRGRPT--VAFDQQG-LVFAVAMEAGAIKLFDSR 84 (235)
Q Consensus 12 ~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~~--~~~~~~~-~~l~~~~~dg~v~i~d~~ 84 (235)
.+..++++..|+. +-+++.++|-|-+..|||++++.. ...+-.|...+ ++|...+ ..|++.+.||.+++||++
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 3567999999987 457899999999999999998732 44455666555 8888854 689999999999999999
Q ss_pred CCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecC-CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEEEE
Q 026679 85 SYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVS 161 (235)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 161 (235)
..+... ....-.....+...++|++ |.+++++-.. ...|.+.|+|.... ....+..|.+.|+.++|.| ....|++
T Consensus 228 ~leHST-IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t-pva~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 228 SLEHST-IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT-PVARLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred ccccce-EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc-ceehhhcCcccccceEecCCCCceeee
Confidence 866411 1121122245777899988 5667776554 45699999987543 2345667778899999999 5678999
Q ss_pred eCCCCcEEEEEcCCCce------eeeecCCCcceeEEEeec-CCCEEEEcc-cceEE
Q 026679 162 GSGDGTLHAWNINTRNE------VACWNGNIGVVACLKWAP-RRAMFVAAS-SVLSF 210 (235)
Q Consensus 162 ~~~dg~i~v~d~~~~~~------~~~~~~~~~~v~~~~~~~-~~~~l~~~~-~~i~i 210 (235)
++.|....+||+...-. +..+. ..+.|..+.|++ ...+++.+. +.+.+
T Consensus 306 aGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~kklei 361 (364)
T KOG0290|consen 306 AGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGKKLEI 361 (364)
T ss_pred cCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecCeeeE
Confidence 99999999999975322 22333 457899999996 567787776 44444
No 183
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=3.9e-17 Score=126.81 Aligned_cols=208 Identities=17% Similarity=0.183 Sum_probs=141.0
Q ss_pred hhhhhhhcccccceeEEEeecCCCeeEEEec---cceEEEEecCcceeeeeeeccCC-ceEEEcCCCCEEE-EEecCCe-
Q 026679 4 NRILRYFKGHKERVISLCMSPVNDSFMSGSL---DHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFA-VAMEAGA- 77 (235)
Q Consensus 4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~~~dg~- 77 (235)
|...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.......... ...+|+|+|+.|+ +.+.++.
T Consensus 191 g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 191 GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 3444556678889999999999998887764 46899999988866443333322 3489999998776 4455554
Q ss_pred -EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-C--CcEEEEEcCCCceeeeeccCCCCCcceeeEEe
Q 026679 78 -IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N--NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 153 (235)
Q Consensus 78 -v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ 153 (235)
|.+||+.++.. ..+..+........|+|||+.++..+. + ..|+++|+.+++.... ... ...+....|+
T Consensus 271 ~Iy~~d~~~~~~-----~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l-t~~--~~~~~~~~~S 342 (435)
T PRK05137 271 DIYTMDLRSGTT-----TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI-SFG--GGRYSTPVWS 342 (435)
T ss_pred eEEEEECCCCce-----EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe-ecC--CCcccCeEEC
Confidence 66778776542 233344555677899999999887764 3 3688889876655433 222 2335668899
Q ss_pred CCCcEEEEeCCC---CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---c-----ceEEeeCCCCCCCCC
Q 026679 154 PDGQYVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---S-----VLSFWIPNPSSNSTD 221 (235)
Q Consensus 154 ~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~-----~i~iw~~~~~~~~~~ 221 (235)
|+|++|+....+ ..|.+||+..+.. ..+. ....+..+.|+|||+.|+..+ + .+.++++++.....+
T Consensus 343 pdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 343 PRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREV 419 (435)
T ss_pred CCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEc
Confidence 999999876543 3688889755443 3333 223567889999999987654 1 366777766554443
No 184
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.81 E-value=1e-17 Score=115.45 Aligned_cols=153 Identities=16% Similarity=0.407 Sum_probs=109.7
Q ss_pred EEEcCCCCEEEEEec----------CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEe--cCCCcEEEE
Q 026679 60 VAFDQQGLVFAVAME----------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT--TTNNNIYVL 127 (235)
Q Consensus 60 ~~~~~~~~~l~~~~~----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~~~ 127 (235)
+.|+|+|+.|++-.. -+...+|.++..+. +.....+. ..++|.+++|+|+|+.+++. ..++.|.+|
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 777888876665433 23566666654432 22233222 33569999999999987654 357799999
Q ss_pred EcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC---CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEc
Q 026679 128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG---DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA 204 (235)
Q Consensus 128 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 204 (235)
|++ ++.+..+ .. ..+..+.|+|+|++|++++. .|.|.+||.++.+.+.... | ..+..++|+|+|++++++
T Consensus 89 d~~-~~~i~~~--~~--~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 89 DVK-GKKIFSF--GT--QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATA 161 (194)
T ss_pred cCc-ccEeEee--cC--CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEE
Confidence 996 4444433 22 44778999999999998864 4679999999888887765 3 347899999999999998
Q ss_pred c--------cceEEeeCCCCCCCCC
Q 026679 205 S--------SVLSFWIPNPSSNSTD 221 (235)
Q Consensus 205 ~--------~~i~iw~~~~~~~~~~ 221 (235)
. +.++||++.+..+...
T Consensus 162 ~t~~r~~~dng~~Iw~~~G~~l~~~ 186 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQGRLLYKK 186 (194)
T ss_pred EeccceeccccEEEEEecCeEeEec
Confidence 5 4489999987755443
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=6e-17 Score=121.72 Aligned_cols=199 Identities=14% Similarity=0.147 Sum_probs=132.8
Q ss_pred ceeEEEeecCCCeeEEEec-cceEEEEecCcc-e---eeeeeecc-CCceEEEcCCCCEEEEEe-cCCeEEEEeccCCCC
Q 026679 16 RVISLCMSPVNDSFMSGSL-DHSVRIWDLRVN-A---CQGILRLR-GRPTVAFDQQGLVFAVAM-EAGAIKLFDSRSYDK 88 (235)
Q Consensus 16 ~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~-~---~~~~~~~~-~~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~ 88 (235)
....++|+|++++|++++. ++.|.+|++++. . ....+... ....++++|+++++++++ .++.|.+||+.+...
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 4568999999998887764 889999999643 2 22222222 233478999998886555 569999999976321
Q ss_pred CC-c--eeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcCC--Cce--eeeeccCC----CCCcceeeEEeCCC
Q 026679 89 GP-F--DTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYG--GEK--RCGFSLEP----SPNTNTEATFTPDG 156 (235)
Q Consensus 89 ~~-~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~--~~~--~~~~~~~~----~~~~i~~~~~~~~~ 156 (235)
.. . ..... ........++|+|+|++++++.. ++.|.+|++.. ++. ...+.... .......+.++|++
T Consensus 161 l~~~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 10 0 01111 11234678999999999988876 89999999973 332 22222111 11223468899999
Q ss_pred cEEEEeCC-CCcEEEEEcCCCceeeeecCC---CcceeEEEeecCCCEEEEcc---cceEEeeCCC
Q 026679 157 QYVVSGSG-DGTLHAWNINTRNEVACWNGN---IGVVACLKWAPRRAMFVAAS---SVLSFWIPNP 215 (235)
Q Consensus 157 ~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~ 215 (235)
++|+++.. ++.|.+|++........+.++ ......+.++|+|++|+++. +.+.+|+++.
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 99988854 788999998643322222212 23456899999999999876 6799998753
No 186
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=1.7e-18 Score=121.84 Aligned_cols=203 Identities=15% Similarity=0.212 Sum_probs=150.7
Q ss_pred cccceeEEEeecC----CCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCC-CCEEEEEecCCeEEEEeccC
Q 026679 13 HKERVISLCMSPV----NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQ-GLVFAVAMEAGAIKLFDSRS 85 (235)
Q Consensus 13 h~~~v~~~~~~~~----~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~-~~~l~~~~~dg~v~i~d~~~ 85 (235)
|.+....++|+-+ ..++|.++.-|.|+|.|+.++++...+.+|+..+ +.++|+ .+++++++.|..|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 6777788888764 3478999999999999999999999999988665 999995 47899999999999999998
Q ss_pred CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeee--------------------------c
Q 026679 86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF--------------------------S 139 (235)
Q Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--------------------------~ 139 (235)
..... ..--..+|...|.++.|+++|.++++++.|.++.+|++...+....+ .
T Consensus 168 ~~Cv~-VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 168 DVCVA-VFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CeEEE-EecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 76511 11124579999999999999999999999999999999743221111 1
Q ss_pred cCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEc-CCCce-------------eeeecCCCcceeEEE--eecCCCEEEE
Q 026679 140 LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI-NTRNE-------------VACWNGNIGVVACLK--WAPRRAMFVA 203 (235)
Q Consensus 140 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~-~~~~~-------------~~~~~~~~~~v~~~~--~~~~~~~l~~ 203 (235)
...|...|-|+.| -|+++++-+-++.|..|.. +-++. +.++.-....|+-+. |.|-++.|+.
T Consensus 247 ~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 247 TDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred cccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 1223345555555 3578999888999999987 21111 223333344555554 4566888888
Q ss_pred cc--cceEEeeCCCCCC
Q 026679 204 AS--SVLSFWIPNPSSN 218 (235)
Q Consensus 204 ~~--~~i~iw~~~~~~~ 218 (235)
|. |.+.+||++....
T Consensus 325 gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEP 341 (385)
T ss_pred ccCCCcEEEEECCCCCC
Confidence 87 8999999976543
No 187
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=3.9e-17 Score=126.35 Aligned_cols=206 Identities=19% Similarity=0.235 Sum_probs=134.7
Q ss_pred hhhhhhhcccccceeEEEeecCCCeeEEEecc---ceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEE-EecCCeE
Q 026679 4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAV-AMEAGAI 78 (235)
Q Consensus 4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~-~~~dg~v 78 (235)
|+..+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++......... ....+|+|+|+.|+. .+.+|..
T Consensus 185 G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 264 (427)
T PRK02889 185 GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNS 264 (427)
T ss_pred CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCc
Confidence 33344555677889999999999998877643 359999998887654433333 234899999988764 5677877
Q ss_pred EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEE--EcCCCceeeeeccCCCCCcceeeEEeCC
Q 026679 79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVL--DAYGGEKRCGFSLEPSPNTNTEATFTPD 155 (235)
Q Consensus 79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~--d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 155 (235)
.+|.+...... ...+..+........|+|||+.|+..+. ++...+| ++.+++... +.... .......|+|+
T Consensus 265 ~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g--~~~~~~~~SpD 338 (427)
T PRK02889 265 QIYTVNADGSG---LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTG--SYNTSPRISPD 338 (427)
T ss_pred eEEEEECCCCC---cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCC--CCcCceEECCC
Confidence 77765432211 2223334445567889999998887654 4555555 444444332 22222 22345789999
Q ss_pred CcEEEEeCCCC---cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---c--ceEEeeCCCCC
Q 026679 156 GQYVVSGSGDG---TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---S--VLSFWIPNPSS 217 (235)
Q Consensus 156 ~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~--~i~iw~~~~~~ 217 (235)
|++|+..+.++ .|.+||+.+++... +... .......|+|||+.|+.++ + .+.+.+.++..
T Consensus 339 G~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 339 GKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred CCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 99998766544 59999998876543 3222 3346789999999998876 2 25555665443
No 188
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=1e-19 Score=141.91 Aligned_cols=206 Identities=17% Similarity=0.240 Sum_probs=157.2
Q ss_pred hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEE
Q 026679 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKL 80 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i 80 (235)
.-+.++.+.+|.++|.|..|...|.++++|+.|..++||.+++..+.....+|...+ ++.+.+..++++++.|..|++
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 346788899999999999999999999999999999999999999999999998766 888888899999999999999
Q ss_pred EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee--------------ecc------
Q 026679 81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG--------------FSL------ 140 (235)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--------------~~~------ 140 (235)
|-+..+.. ...+.+|.+.|++++|+|-. +.+.||++++||.+-.-.... ..+
T Consensus 259 Wrl~~~~p----vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~ 330 (1113)
T KOG0644|consen 259 WRLPDGAP----VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDR 330 (1113)
T ss_pred EecCCCch----HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccc
Confidence 99998765 56678999999999999954 678899999999871100000 000
Q ss_pred --------CCCCCcceeeEEeCCCcEEE-----------EeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEE
Q 026679 141 --------EPSPNTNTEATFTPDGQYVV-----------SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMF 201 (235)
Q Consensus 141 --------~~~~~~i~~~~~~~~~~~l~-----------~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 201 (235)
.........++|...+-.++ ++-.+..+.+|++.+|..++.+.+|...+..+.++|-...+
T Consensus 331 f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri 410 (1113)
T KOG0644|consen 331 FLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRI 410 (1113)
T ss_pred cccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHh
Confidence 00001111222222222222 33345568899999999999999999999999999966655
Q ss_pred E-Ecc--cceEEeeCCCC
Q 026679 202 V-AAS--SVLSFWIPNPS 216 (235)
Q Consensus 202 ~-~~~--~~i~iw~~~~~ 216 (235)
+ +++ |...|||+-.+
T Consensus 411 ~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 411 AMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred hhhccCCCceEeeecccC
Confidence 4 444 78999998543
No 189
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6.6e-18 Score=121.97 Aligned_cols=216 Identities=13% Similarity=0.119 Sum_probs=157.8
Q ss_pred hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCc------ceeeeeeeccC---CceEEEcCCCCEEEEEecCC
Q 026679 6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV------NACQGILRLRG---RPTVAFDQQGLVFAVAMEAG 76 (235)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~------~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg 76 (235)
+.+.+.+|.+.|.++.|+.++++|++|+.|..+++|+++. .+++.....+. +-+++|......+++|..++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 4566789999999999999999999999999999999863 34444443332 33488999999999999999
Q ss_pred eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-eeeeeccCCCCCcceeeEEeCC
Q 026679 77 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPD 155 (235)
Q Consensus 77 ~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~ 155 (235)
+|.+.|+++.+. +..+......+.|+.+..+|..+.|++.+.++.|.+||.+..+ ....+-....+.....+.|+|.
T Consensus 128 ~VI~HDiEt~qs--i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 128 TVIKHDIETKQS--IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eeEeeeccccee--eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 999999998653 2223333344689999999999999999999999999998765 3333333334455777899995
Q ss_pred -CcEEEEeCCCCcEEEEEcCCCc-eeeeecCC------CcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCCCCCC
Q 026679 156 -GQYVVSGSGDGTLHAWNINTRN-EVACWNGN------IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 223 (235)
Q Consensus 156 -~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~------~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~~~~ 223 (235)
..+|++.+..+-+-+||.+... .+....+. ...-.+..|+|+|..+++-- ..-.+||+....+..++.
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 5677888888889999987543 22222111 12335778999999888775 334556666554444443
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=1.9e-16 Score=119.04 Aligned_cols=206 Identities=14% Similarity=0.189 Sum_probs=135.9
Q ss_pred hhhhcccccceeEEEeecCCCeeEEEe-ccceEEEEecCc-cee--eeeeeccCCce-EEEcCCCCEEEEEec-CCeEEE
Q 026679 7 LRYFKGHKERVISLCMSPVNDSFMSGS-LDHSVRIWDLRV-NAC--QGILRLRGRPT-VAFDQQGLVFAVAME-AGAIKL 80 (235)
Q Consensus 7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~-~~~--~~~~~~~~~~~-~~~~~~~~~l~~~~~-dg~v~i 80 (235)
++.++ +.+....++++|++++|++++ .++.|.+|+++. +.. .........+. ++++|+++.+++++. ++.+.+
T Consensus 28 ~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v 106 (330)
T PRK11028 28 LQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSV 106 (330)
T ss_pred eeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEE
Confidence 34443 235577889999999887664 578899999863 332 22233222334 999999998888764 889999
Q ss_pred EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEec-CCCcEEEEEcCCCceeee-----eccCCCCCcceeeEEeC
Q 026679 81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCG-----FSLEPSPNTNTEATFTP 154 (235)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~-----~~~~~~~~~i~~~~~~~ 154 (235)
|++.+........... .+......++++|+++++++++ .++.|.+||+.+...+.. ...... .....+.|+|
T Consensus 107 ~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~p 184 (330)
T PRK11028 107 SPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHP 184 (330)
T ss_pred EEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECC
Confidence 9997432111111111 2223466788999999886655 569999999976332211 111112 3357799999
Q ss_pred CCcEEEEeCC-CCcEEEEEcCC--Cc--eeeeecCC------CcceeEEEeecCCCEEEEcc---cceEEeeCCC
Q 026679 155 DGQYVVSGSG-DGTLHAWNINT--RN--EVACWNGN------IGVVACLKWAPRRAMFVAAS---SVLSFWIPNP 215 (235)
Q Consensus 155 ~~~~l~~~~~-dg~i~v~d~~~--~~--~~~~~~~~------~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~ 215 (235)
+|++++++.+ ++.|.+|++.. ++ .+..+..+ ......+.++|++++++++. +.|.+|+++.
T Consensus 185 dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 185 NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 9999988876 89999999973 22 23333211 11233688999999999885 6799999854
No 191
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.79 E-value=1.4e-16 Score=122.99 Aligned_cols=206 Identities=27% Similarity=0.487 Sum_probs=160.5
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEec-cceEEEEecCcceeeeeeeccCCce--EEEcCCCC-EEEEEecCCeEEE
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSL-DHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGL-VFAVAMEAGAIKL 80 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~-~l~~~~~dg~v~i 80 (235)
.....+..|...|.+++|+|++..+++++. |+.+++|+...+.....+..+...+ ++++|++. .+++++.|+.+++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 455667889999999999999998888885 9999999999888888887765443 88999988 5555589999999
Q ss_pred EeccCCCCCCceeE-eecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce-eeeeccCCCCCcceeeEEeCCCcE
Q 026679 81 FDSRSYDKGPFDTF-LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-RCGFSLEPSPNTNTEATFTPDGQY 158 (235)
Q Consensus 81 ~d~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ 158 (235)
||...... .. ....|.... ...|+|++..+++++.|+.+++|+.+.... .... ..|...+.++.|.|++..
T Consensus 226 wd~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~ 298 (466)
T COG2319 226 WDLSTGKL----LRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSVLSVAFSPDGKL 298 (466)
T ss_pred EECCCCcE----EeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccEEEEEECCCCCE
Confidence 98774332 22 455666664 338999998888999999999999987665 3333 445677999999998888
Q ss_pred EEEeCCCCcEEEEEcCCCceeeeec--CCCcceeEEEeecCCCEEEEc-c--cceEEeeCCCCC
Q 026679 159 VVSGSGDGTLHAWNINTRNEVACWN--GNIGVVACLKWAPRRAMFVAA-S--SVLSFWIPNPSS 217 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~-~--~~i~iw~~~~~~ 217 (235)
+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ . +.+.+|+.....
T Consensus 299 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 299 LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 8889889889999998887766665 787789999994332455555 3 668889887655
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.79 E-value=2.6e-17 Score=115.60 Aligned_cols=203 Identities=13% Similarity=0.102 Sum_probs=159.2
Q ss_pred ccccceeEEEeecCCCeeEEEeccceEEEEecCcc---eeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccC-
Q 026679 12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN---ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRS- 85 (235)
Q Consensus 12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~- 85 (235)
--.++|+|.+|++|+..+|.+-....|.||..... +..+++..|...+ ++|+|..+.|++|+.|..-++|....
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 34579999999999999999999999999987654 4567777776544 99999999999999999999999843
Q ss_pred CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce--eeeeccCCCCCcceeeEEeCCCcEEEEeC
Q 026679 86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK--RCGFSLEPSPNTNTEATFTPDGQYVVSGS 163 (235)
Q Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 163 (235)
+...+ ...+..++...+++.|+|.++.+++|+....|.+|-++..+. +...........|+++.|+|++-+|++|+
T Consensus 88 ~~Wkp--tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 88 GTWKP--TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred Ceecc--ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 33222 444556788999999999999999999999999887765432 22222344557799999999999999999
Q ss_pred CCCcEEEEEcC-----C-------------CceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679 164 GDGTLHAWNIN-----T-------------RNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 164 ~dg~i~v~d~~-----~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~ 216 (235)
.|+..+||..- . |+++.++....+.+..+.|+|+|..|+-.+ +.+.+=|....
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 99999998742 1 233444444567899999999999999887 66777776554
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=5.5e-17 Score=115.92 Aligned_cols=154 Identities=18% Similarity=0.312 Sum_probs=125.0
Q ss_pred cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC---CceEEEcCCC--CEEEEEe--cCCeEEEEeccCCC
Q 026679 15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG---RPTVAFDQQG--LVFAVAM--EAGAIKLFDSRSYD 87 (235)
Q Consensus 15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~--~~l~~~~--~dg~v~i~d~~~~~ 87 (235)
.+|.++.++. ++|+.+=.+ .|+|||+++.+.++++..-. ...++++++. .+++.-+ ..|.|.+||..+.+
T Consensus 88 t~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~ 164 (391)
T KOG2110|consen 88 TSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ 164 (391)
T ss_pred CceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce
Confidence 4566666653 556666554 49999999999988886542 2346776644 4666533 47999999998866
Q ss_pred CCCceeEeecCCCcceeEEEEccCCCeEEEecCCCc-EEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC
Q 026679 88 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN-IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 166 (235)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (235)
. ......|.+.+.+++|+++|.+||++++.|+ |++|.+.+|+.+.++........|.+++|+|++++|++.+..+
T Consensus 165 ~----v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 165 P----VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE 240 (391)
T ss_pred e----eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC
Confidence 5 5666799999999999999999999999887 7999999999999888766677899999999999999999999
Q ss_pred cEEEEEcCC
Q 026679 167 TLHAWNINT 175 (235)
Q Consensus 167 ~i~v~d~~~ 175 (235)
+|++|.+..
T Consensus 241 TVHiFKL~~ 249 (391)
T KOG2110|consen 241 TVHIFKLEK 249 (391)
T ss_pred eEEEEEecc
Confidence 999999863
No 194
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=4.1e-16 Score=120.43 Aligned_cols=203 Identities=24% Similarity=0.451 Sum_probs=161.3
Q ss_pred hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcce-eeeeeeccC---CceEEE-cCCCC-EEEEEec-CCeEEEE
Q 026679 9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-CQGILRLRG---RPTVAF-DQQGL-VFAVAME-AGAIKLF 81 (235)
Q Consensus 9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~---~~~~~~-~~~~~-~l~~~~~-dg~v~i~ 81 (235)
.+..|...+.++.+.+.+..++.++.|+.+.+|+...+. ....+.... ...+.+ .+++. .++..+. ++.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456799999999999999999999999999999998876 556665532 223444 77777 5555444 9999999
Q ss_pred eccC-CCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc-E
Q 026679 82 DSRS-YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-Y 158 (235)
Q Consensus 82 d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 158 (235)
+... .. .......|...+..++|+|++..++.++. ++.+++|++..+.....+.. |...+.+++|+|++. .
T Consensus 140 ~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~ 213 (466)
T COG2319 140 DLSTPGK----LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG--HTDPVSSLAFSPDGGLL 213 (466)
T ss_pred EecCCCe----EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc--CCCceEEEEEcCCcceE
Confidence 9987 32 25667788899999999999998888886 99999999998766665554 557799999999998 5
Q ss_pred EEEeCCCCcEEEEEcCCCceee-eecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679 159 VVSGSGDGTLHAWNINTRNEVA-CWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~ 218 (235)
+++++.|+.|++||...+.... .+..|.... -..|+|++.++++++ +.+++|+......
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 5555999999999998788777 678887765 348999998887676 7799999976543
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.78 E-value=1.8e-17 Score=116.34 Aligned_cols=199 Identities=14% Similarity=0.134 Sum_probs=150.3
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecC-cce--eeeeeeccC--CceEEEcCCCCEEEEEecCCeEE
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR-VNA--CQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIK 79 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~--~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v~ 79 (235)
+..++++.|...|++++|+|..+.|++|+.|..-++|... .+. +...+...+ ..++.|+|.++.|++|+....|.
T Consensus 46 ~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~is 125 (361)
T KOG1523|consen 46 EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLIS 125 (361)
T ss_pred eeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEE
Confidence 4567889999999999999999999999999999999983 332 222333222 45599999999999999999999
Q ss_pred EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC------------------CceeeeeccC
Q 026679 80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG------------------GEKRCGFSLE 141 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~------------------~~~~~~~~~~ 141 (235)
+|-.+..+.--........+.+.|.+++|+|++-+|++|+.|+..++|...- |+...+ ..
T Consensus 126 Vcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E--~~ 203 (361)
T KOG1523|consen 126 VCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE--AS 203 (361)
T ss_pred EEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh--hc
Confidence 9988775543222333445678899999999999999999999999997521 111111 22
Q ss_pred CCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCc-eeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679 142 PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN-EVACWNGNIGVVACLKWAPRRAMFVAAS 205 (235)
Q Consensus 142 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 205 (235)
...+.+..+.|+|+|..|+-.+.|..+.+-|..... .+.......-+..++.|-.+...+++|-
T Consensus 204 ~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~ 268 (361)
T KOG1523|consen 204 SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGY 268 (361)
T ss_pred cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCC
Confidence 345789999999999999999999999999986554 3333333336778888877666655553
No 196
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=6.6e-18 Score=126.50 Aligned_cols=180 Identities=16% Similarity=0.303 Sum_probs=140.5
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcc----------eeeeeeeccCCce--EEEcCCCCEEEEE
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN----------ACQGILRLRGRPT--VAFDQQGLVFAVA 72 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~----------~~~~~~~~~~~~~--~~~~~~~~~l~~~ 72 (235)
+++.+|++|.++|.|+++.+++..+++|+.||+|+.|++... .....+.+|...+ +++++....|+++
T Consensus 335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc 414 (577)
T KOG0642|consen 335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC 414 (577)
T ss_pred eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee
Confidence 567789999999999999999999999999999999976421 2334556666555 8899988899999
Q ss_pred ecCCeEEEEeccCCCCC--C------c-eeEeec---------------------------------C-----CCcceeE
Q 026679 73 MEAGAIKLFDSRSYDKG--P------F-DTFLVG---------------------------------G-----DTAEVCD 105 (235)
Q Consensus 73 ~~dg~v~i~d~~~~~~~--~------~-~~~~~~---------------------------------~-----~~~~v~~ 105 (235)
+.||++++|+....... . . ..+... . ....+..
T Consensus 415 s~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~ 494 (577)
T KOG0642|consen 415 SSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINK 494 (577)
T ss_pred cCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccce
Confidence 99999999997654320 0 0 000000 0 0123556
Q ss_pred EEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC
Q 026679 106 IKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN 185 (235)
Q Consensus 106 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 185 (235)
+.++|.....+++..|+.|+++|..+++.+.... .|...++++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus 495 vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~--a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 495 VVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV--AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred EEecCCCCeeEecccCCceecccccccccchhee--eccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 7788888889999999999999999999887655 45567999999999999999999999999999887777666655
Q ss_pred C
Q 026679 186 I 186 (235)
Q Consensus 186 ~ 186 (235)
.
T Consensus 573 r 573 (577)
T KOG0642|consen 573 R 573 (577)
T ss_pred c
Confidence 4
No 197
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=3.2e-17 Score=131.20 Aligned_cols=195 Identities=17% Similarity=0.287 Sum_probs=146.2
Q ss_pred EEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcC---CCCEEEEEecCCeEEEEeccCCCCCCceeE
Q 026679 19 SLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQ---QGLVFAVAMEAGAIKLFDSRSYDKGPFDTF 94 (235)
Q Consensus 19 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~---~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 94 (235)
-+.|.....+|++++.-..|+|||.........+......+ -++++ .|+.+++|..||.+++||.+..... ....
T Consensus 1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~ 1248 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-SLVC 1248 (1387)
T ss_pred eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-ccce
Confidence 35677666667777768899999998888888777666544 34443 5799999999999999999875542 2344
Q ss_pred eecCCCcc--eeEEEEccCCC-eEEEecCCCcEEEEEcCCCceeeeeccCCC--CC-cceeeEEeCCCcEEEEeCCCCcE
Q 026679 95 LVGGDTAE--VCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPS--PN-TNTEATFTPDGQYVVSGSGDGTL 168 (235)
Q Consensus 95 ~~~~~~~~--v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~-~i~~~~~~~~~~~l~~~~~dg~i 168 (235)
....|... |..+.+.+.|- .|++|+.+|.|++||++.......+....+ .+ ..+++..++....+|+|+. +.|
T Consensus 1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLI 1327 (1387)
T ss_pred eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceE
Confidence 55567666 99999988654 499999999999999998533222222221 13 4899999999999999998 899
Q ss_pred EEEEcCCCceeeeecCC-------CcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679 169 HAWNINTRNEVACWNGN-------IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 169 ~v~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~ 216 (235)
+||++ .|+.+..++.+ .+.+.|++|+|...++++|+ +.+.||..+..
T Consensus 1328 kIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1328 KIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred EEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 99998 45555554432 34679999999988888887 66999987544
No 198
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=9.3e-17 Score=114.73 Aligned_cols=196 Identities=17% Similarity=0.262 Sum_probs=142.5
Q ss_pred cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec---cCCceEEEcCC-CCEEEEEecCCeEEEEeccCCCC--
Q 026679 15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL---RGRPTVAFDQQ-GLVFAVAMEAGAIKLFDSRSYDK-- 88 (235)
Q Consensus 15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~-- 88 (235)
-.+..++|++.-..+|++..|-.|++||-.. .+...++. .+..+++|-|. +..|++|+.. -|.+|.......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 4577899998666789999999999999655 44444433 34567999994 4677777765 588997653211
Q ss_pred --------CCceeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEE
Q 026679 89 --------GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV 159 (235)
Q Consensus 89 --------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 159 (235)
.........+| .+|++++|.+||..+++++. +..|.+||..++..+.... ...+.++-+.|||||.+|
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~--~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP--KGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc--cCCCceeeEEEcCCCCEE
Confidence 11122233334 68999999999999999876 6789999999988765442 233557889999999999
Q ss_pred EEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCC
Q 026679 160 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP 215 (235)
Q Consensus 160 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~ 215 (235)
++++-|+..++|+....-......-..+.|....|+|+|++|+.+. +.-++|.+..
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f 310 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTF 310 (445)
T ss_pred EEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEee
Confidence 9999999999996543322223333445999999999999887765 7777887654
No 199
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=9.8e-17 Score=112.22 Aligned_cols=160 Identities=17% Similarity=0.216 Sum_probs=122.9
Q ss_pred CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc--CCCeEEEecCCCcEEEEEcCC---
Q 026679 57 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLLTTTNNNIYVLDAYG--- 131 (235)
Q Consensus 57 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~--- 131 (235)
+.++.|.+.|+.+++|+.|++++|||.+.....-........|.+.|..+.|.+ -|+.+++++.|+++.+|.-..
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~ 95 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE 95 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc
Confidence 345899999999999999999999998766654455667788999999999976 589999999999999998521
Q ss_pred ----CceeeeeccCCCCCcceeeEEeCC--CcEEEEeCCCCcEEEEEcCCC-----------------------------
Q 026679 132 ----GEKRCGFSLEPSPNTNTEATFTPD--GQYVVSGSGDGTLHAWNINTR----------------------------- 176 (235)
Q Consensus 132 ----~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~----------------------------- 176 (235)
.+-+....+......|+.+.|.|. |-.|++++.||.++||+..+.
T Consensus 96 ~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cv 175 (361)
T KOG2445|consen 96 EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCV 175 (361)
T ss_pred ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEE
Confidence 122333445556678999999994 778899999999999985421
Q ss_pred --------------------------------------ceeeeecCCCcceeEEEeecC----CCEEEEcccc-eEEeeC
Q 026679 177 --------------------------------------NEVACWNGNIGVVACLKWAPR----RAMFVAASSV-LSFWIP 213 (235)
Q Consensus 177 --------------------------------------~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~~-i~iw~~ 213 (235)
..+.++.+|..+|+.|+|.|+ ...|++++++ |+||.+
T Consensus 176 sWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v 255 (361)
T KOG2445|consen 176 SWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKV 255 (361)
T ss_pred eeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEE
Confidence 012223467788999999995 3577788755 999998
Q ss_pred CCC
Q 026679 214 NPS 216 (235)
Q Consensus 214 ~~~ 216 (235)
...
T Consensus 256 ~~~ 258 (361)
T KOG2445|consen 256 KVA 258 (361)
T ss_pred eec
Confidence 753
No 200
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=1.2e-17 Score=127.30 Aligned_cols=204 Identities=16% Similarity=0.202 Sum_probs=147.9
Q ss_pred hhhhhhcccccceeEEEeec-CCCeeEEEeccceEEEEecCcceeeee-----eeccC---CceEEEcCCCCEEEEEecC
Q 026679 5 RILRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGI-----LRLRG---RPTVAFDQQGLVFAVAMEA 75 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~-----~~~~~---~~~~~~~~~~~~l~~~~~d 75 (235)
+-+..+.+|.+.|+.+.|+| +..+||+||.|..|+||.+..+..... .-++. ..++.|+|...-|+..+..
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~ 149 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH 149 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence 34556789999999999999 457899999999999999974432221 11222 2348899977767777788
Q ss_pred CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC-CceeeeeccCCCCCcceeeEEeC
Q 026679 76 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEATFTP 154 (235)
Q Consensus 76 g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~i~~~~~~~ 154 (235)
|++++||+.+.+. ...+.+|...|.++.|+.||..|++++.|..|++||.+. ++.++....|... .-..+.|.-
T Consensus 150 g~v~i~D~stqk~----~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~-rdsRv~w~G 224 (1012)
T KOG1445|consen 150 GSVYITDISTQKT----AVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGM-RDSRVLWAG 224 (1012)
T ss_pred ceEEEEEcccCce----eecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccc-hhheeeecc
Confidence 9999999998776 778889999999999999999999999999999999986 4555555444432 334577766
Q ss_pred CCcEEEEeCCC----CcEEEEEcCCC-ceeeeecC-CCcceeEEEeecCCCEEEEcc-cceEEeeC
Q 026679 155 DGQYVVSGSGD----GTLHAWNINTR-NEVACWNG-NIGVVACLKWAPRRAMFVAAS-SVLSFWIP 213 (235)
Q Consensus 155 ~~~~l~~~~~d----g~i~v~d~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~ 213 (235)
+-..|++.+-+ ..+++||.+.. ..++++.- ....|.---+.||.++|+.++ |+-+++-+
T Consensus 225 n~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~l 290 (1012)
T KOG1445|consen 225 NWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFML 290 (1012)
T ss_pred chhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEE
Confidence 55556555433 56899998763 34444432 223455567899998888887 55444433
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=8e-17 Score=123.64 Aligned_cols=199 Identities=13% Similarity=0.143 Sum_probs=148.3
Q ss_pred ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCC----
Q 026679 16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKG---- 89 (235)
Q Consensus 16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~---- 89 (235)
.|..++|-|||..|+.+.. ..+.+||...|..++.+++|...+ ++|+.+|+.+++|+.|..|.+|+..-....
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH 92 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH 92 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence 7999999999987776654 468999999999999999998655 999999999999999999999986431110
Q ss_pred ----CceeEee-------------------------cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc
Q 026679 90 ----PFDTFLV-------------------------GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL 140 (235)
Q Consensus 90 ----~~~~~~~-------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 140 (235)
....+.. ......+.+++|..||.+++.|-.+|+|.+-+....+....-..
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rp 172 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERP 172 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCC
Confidence 0000000 01124577889999999999999999999987544444444444
Q ss_pred CCCCCcceeeEEeCCC-----cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679 141 EPSPNTNTEATFTPDG-----QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 213 (235)
Q Consensus 141 ~~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~ 213 (235)
.+...+|.+++|+|.. ..+++.....++.+|.+ +|+.+..-..-.-...|+.+.|+|.+++.|+ +.+++|.-
T Consensus 173 gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 173 GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR 251 (1081)
T ss_pred CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee
Confidence 4566889999999963 46777777778888877 5655543333445668999999999999987 66888765
Q ss_pred CCC
Q 026679 214 NPS 216 (235)
Q Consensus 214 ~~~ 216 (235)
++-
T Consensus 252 ~Gv 254 (1081)
T KOG1538|consen 252 DGV 254 (1081)
T ss_pred cCe
Confidence 553
No 202
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2.2e-17 Score=124.77 Aligned_cols=194 Identities=15% Similarity=0.191 Sum_probs=151.9
Q ss_pred cccccceeEEEeecCCCeeEEEecc---ceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecCCeEEEEeccC
Q 026679 11 KGHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRS 85 (235)
Q Consensus 11 ~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 85 (235)
-.|..+|..+.|+..|.+|++...+ ..|.|.++.......-+.... ...+.|+|...+|++++. ..|++||+..
T Consensus 518 I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~k 596 (733)
T KOG0650|consen 518 IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSK 596 (733)
T ss_pred EecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhH
Confidence 3588999999999999999988664 468899987766555553333 334899999988888876 5899999976
Q ss_pred CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-eeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679 86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 164 (235)
Q Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (235)
... ...+......|..++.+|.|..|+.++.|+.+..||+.-.. +.+.+. .|...+++++|++.-.++++|+.
T Consensus 597 qel----vKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr--~H~~avr~Va~H~ryPLfas~sd 670 (733)
T KOG0650|consen 597 QEL----VKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR--LHEKAVRSVAFHKRYPLFASGSD 670 (733)
T ss_pred HHH----HHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh--hhhhhhhhhhhccccceeeeecC
Confidence 443 33344455678999999999999999999999999997653 333333 45567999999999999999999
Q ss_pred CCcEEEEEcCC---------CceeeeecCCCcc----eeEEEeecCCCEEEEcc--cceEEe
Q 026679 165 DGTLHAWNINT---------RNEVACWNGNIGV----VACLKWAPRRAMFVAAS--SVLSFW 211 (235)
Q Consensus 165 dg~i~v~d~~~---------~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~--~~i~iw 211 (235)
||.+.|+.-.- --++..+.+|... |....|+|...+|.+++ |+|++|
T Consensus 671 Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 671 DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 99999986431 1235667788654 88999999999999988 789998
No 203
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.76 E-value=4.4e-16 Score=107.30 Aligned_cols=153 Identities=21% Similarity=0.339 Sum_probs=106.8
Q ss_pred eEEEeecCCCeeEEEec----------cceEEEEecCc-ceeeeeeecc---CCceEEEcCCCCEEEEEe--cCCeEEEE
Q 026679 18 ISLCMSPVNDSFMSGSL----------DHSVRIWDLRV-NACQGILRLR---GRPTVAFDQQGLVFAVAM--EAGAIKLF 81 (235)
Q Consensus 18 ~~~~~~~~~~~l~s~~~----------d~~i~vwd~~~-~~~~~~~~~~---~~~~~~~~~~~~~l~~~~--~dg~v~i~ 81 (235)
..+.|+|+|+.|+.-.. -+...+|.++. +.....+... .+..++|+|+++.|++.. .++.+.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987654322 23455555532 2334444332 244599999999876653 56799999
Q ss_pred eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC---CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679 82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 158 (235)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (235)
|++. + ....+ ....+..+.|+|+|++|++++. .|.|.+||.++.+.+.... + ..++.++|+|+|++
T Consensus 89 d~~~-~----~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~-~~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 89 DVKG-K----KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---H-SDATDVEWSPDGRY 157 (194)
T ss_pred cCcc-c----EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---c-CcEEEEEEcCCCCE
Confidence 9962 1 12333 3456788999999999999874 4679999999887775543 2 23788999999999
Q ss_pred EEEeCC------CCcEEEEEcCCCceeeee
Q 026679 159 VVSGSG------DGTLHAWNINTRNEVACW 182 (235)
Q Consensus 159 l~~~~~------dg~i~v~d~~~~~~~~~~ 182 (235)
|+++.. |+.++||+. +|+.+...
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred EEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 998864 678999998 57666544
No 204
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.76 E-value=3.4e-17 Score=122.31 Aligned_cols=165 Identities=19% Similarity=0.276 Sum_probs=121.6
Q ss_pred ccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCce
Q 026679 14 KERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD 92 (235)
Q Consensus 14 ~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 92 (235)
+..|+|+.|-|.+ ..++.+-.+|.++++|.+. ......+.....+++..+.....-+.. +. .+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~------~~~~t~p~~~~~k~~~~f~i~t~ksk~------~r--NP-- 282 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI------VCGATAPSYQALKDGDQFAILTSKSKK------TR--NP-- 282 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccc------cccCCCCcccccCCCCeeEEeeeeccc------cC--Cc--
Confidence 3689999999965 5667777899999998621 111122334444566655544321110 00 11
Q ss_pred eEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEE
Q 026679 93 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172 (235)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d 172 (235)
.....--...|..++|+|||++||+.+.||.+++||..+.+.+..++ ..-+...|++|||||+||++|++|--|.||.
T Consensus 283 v~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk--SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 283 VARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK--SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred cceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH--hhccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 11122223478999999999999999999999999998877665443 3335689999999999999999999999999
Q ss_pred cCCCceeeeecCCCcceeEEEeec
Q 026679 173 INTRNEVACWNGNIGVVACLKWAP 196 (235)
Q Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~~ 196 (235)
+...+.+..-++|.+.|..++|.|
T Consensus 361 f~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 361 FEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccceEEEeccccccceeeEeecc
Confidence 999999999999999999999984
No 205
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=2.4e-16 Score=113.51 Aligned_cols=196 Identities=12% Similarity=0.229 Sum_probs=147.2
Q ss_pred cccceeEEEeecCCCeeEEEeccceEEEEecCcce----eeeeeecc-CCceEEEcCC-CCEEEEEecC--CeEEEEecc
Q 026679 13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA----CQGILRLR-GRPTVAFDQQ-GLVFAVAMEA--GAIKLFDSR 84 (235)
Q Consensus 13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~~~-~~~~~~~~~~-~~~l~~~~~d--g~v~i~d~~ 84 (235)
.+++|..++.. ...|++|-.+|.+.+|..+.+. ....+..+ +...+.-++. ..++++|+.. ..+.+||++
T Consensus 104 ~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 104 GTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred ccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 34455555544 3478888899999999987442 22223322 2333555554 4566668888 889999998
Q ss_pred CCCCCCceeEeecC---------CCcceeEEEEccC--CCeEEEecCCCcEEEEEcCCCc-eeeeeccCCCCCcceeeEE
Q 026679 85 SYDKGPFDTFLVGG---------DTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATF 152 (235)
Q Consensus 85 ~~~~~~~~~~~~~~---------~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~ 152 (235)
+.+. .+.... -+-.++++.|-+. ...|++++.-+.+++||.+.++ ++..+.. ...+++++..
T Consensus 182 ~~~q----iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~--~E~~is~~~l 255 (412)
T KOG3881|consen 182 QSKQ----IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF--LENPISSTGL 255 (412)
T ss_pred ccee----eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc--ccCcceeeee
Confidence 7632 221111 1234567888887 7889999999999999998654 4444444 3466999999
Q ss_pred eCCCcEEEEeCCCCcEEEEEcCCCceeee-ecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679 153 TPDGQYVVSGSGDGTLHAWNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 153 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~ 216 (235)
.|+++++++|...|.+..||++.++.... +++..+.|++|..+|..+++++++ ..++|+|+++.
T Consensus 256 ~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 256 TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 99999999999999999999999998877 888899999999999999999999 77999999884
No 206
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=2.6e-16 Score=122.33 Aligned_cols=203 Identities=17% Similarity=0.228 Sum_probs=148.9
Q ss_pred cccccceeEEEeecCCC--eeEEEeccceEEEEecCccee-ee-----e--------eeccCCceEEEcC-CCCEEEEEe
Q 026679 11 KGHKERVISLCMSPVND--SFMSGSLDHSVRIWDLRVNAC-QG-----I--------LRLRGRPTVAFDQ-QGLVFAVAM 73 (235)
Q Consensus 11 ~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vwd~~~~~~-~~-----~--------~~~~~~~~~~~~~-~~~~l~~~~ 73 (235)
..|..+++.+.|..+.. -+++++.||.|..|+++.-.. .. . -......+++|.+ +...|++|+
T Consensus 288 ~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT 367 (555)
T KOG1587|consen 288 VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT 367 (555)
T ss_pred ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc
Confidence 35889999999987544 499999999999998764322 10 0 1112234488888 567899999
Q ss_pred cCCeEEEEeccCCCCCC----ceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcC-CCceeeeeccCCCCCcce
Q 026679 74 EAGAIKLFDSRSYDKGP----FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY-GGEKRCGFSLEPSPNTNT 148 (235)
Q Consensus 74 ~dg~v~i~d~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~i~ 148 (235)
.+|.|.--+-....... ........|.++|..+.++|=+..++..+.|.++++|... ...++. ....+...++
T Consensus 368 e~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~--~~~~~~~~v~ 445 (555)
T KOG1587|consen 368 EEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL--SLDSSPDYVT 445 (555)
T ss_pred CCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcch--hhhhccceee
Confidence 99999885544433322 1223455678999999999977766666669999999976 444443 3444555699
Q ss_pred eeEEeCCC-cEEEEeCCCCcEEEEEcCC--CceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679 149 EATFTPDG-QYVVSGSGDGTLHAWNINT--RNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 149 ~~~~~~~~-~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~ 215 (235)
+++|||.. ..++++..||.|.+||+.. ..++...+.+....+.+.|+++|+.|+.|+ |++.+|++..
T Consensus 446 ~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 446 DVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 99999964 5678888899999999964 344555555566778899999999999998 9999999864
No 207
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=3.6e-16 Score=121.55 Aligned_cols=206 Identities=17% Similarity=0.216 Sum_probs=145.1
Q ss_pred ccceeEEEeecC-CCeeEEEeccceEEEEecCccee--eeee----eccCCce--EEEcC--CCCEEEEEecCCeEEEEe
Q 026679 14 KERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVNAC--QGIL----RLRGRPT--VAFDQ--QGLVFAVAMEAGAIKLFD 82 (235)
Q Consensus 14 ~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~--~~~~----~~~~~~~--~~~~~--~~~~l~~~~~dg~v~i~d 82 (235)
...|+|++|+|. ..+++.|..+|.|.+||++.+.. ...+ ..|..++ +.|.. .+.-|++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 468999999995 57888999999999999987755 2222 2333444 55554 335599999999999999
Q ss_pred ccCCCCCCcee----Ee----ecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceee------eeccCCCCCcc
Q 026679 83 SRSYDKGPFDT----FL----VGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRC------GFSLEPSPNTN 147 (235)
Q Consensus 83 ~~~~~~~~~~~----~~----~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~------~~~~~~~~~~i 147 (235)
++....+.... .. .......+++++|.+ +...+++|+++|.|..-+....+... ......|.++|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 87654311110 00 012234688899988 56789999999998874433322211 11233456889
Q ss_pred eeeEEeCCCcEEEEeCCCCcEEEEEcC-CCceeeeecCCCcceeEEEeecCCCEEEEc-c--cceEEeeCCCCCCC
Q 026679 148 TEATFTPDGQYVVSGSGDGTLHAWNIN-TRNEVACWNGNIGVVACLKWAPRRAMFVAA-S--SVLSFWIPNPSSNS 219 (235)
Q Consensus 148 ~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~--~~i~iw~~~~~~~~ 219 (235)
..+.++|-+..++..+.|..+++|... ...++..+..+...+++++|||....+... . |++.+||+......
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~ 477 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE 477 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC
Confidence 999999977666555559999999988 777888888888889999999977554444 3 88999999655433
No 208
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.74 E-value=1.6e-15 Score=117.72 Aligned_cols=203 Identities=21% Similarity=0.337 Sum_probs=136.2
Q ss_pred hhhhcccccceeEEEeecCCCeeEEEecc---ceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEE-ecCC--eEE
Q 026679 7 LRYFKGHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVA-MEAG--AIK 79 (235)
Q Consensus 7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~dg--~v~ 79 (235)
.+.+..+...+...+|+|+|++|+.++.+ ..|++||+.+++......... ....+|+|+++.|+.. +.++ .|.
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 34455566678899999999998877654 479999998876544433332 2348999999877654 4444 588
Q ss_pred EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC-C--cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC
Q 026679 80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-N--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG 156 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 156 (235)
+||+.+... ..+..+........|+|+|+.|+..+.. + .|+++|+.+++... +... ........|+|+|
T Consensus 262 ~~d~~~~~~-----~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~--~~~~~~~~~spdg 333 (417)
T TIGR02800 262 VMDLDGKQL-----TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFR--GGYNASPSWSPDG 333 (417)
T ss_pred EEECCCCCE-----EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC--CCCccCeEECCCC
Confidence 888876542 2222333445567899999988776543 3 58888887766432 2222 2346678999999
Q ss_pred cEEEEeCCCC---cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-----cceEEeeCCCCCCC
Q 026679 157 QYVVSGSGDG---TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNS 219 (235)
Q Consensus 157 ~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~iw~~~~~~~~ 219 (235)
++|+.++.++ .|.+||+.++... .+... .......|+|++++|+..+ ..+.+.+.++....
T Consensus 334 ~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~ 402 (417)
T TIGR02800 334 DLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRA 402 (417)
T ss_pred CEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceee
Confidence 9998887765 7899998775543 23222 2345668999999988876 23666666554433
No 209
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=3.7e-15 Score=115.95 Aligned_cols=205 Identities=19% Similarity=0.218 Sum_probs=135.8
Q ss_pred hhhhcccccceeEEEeecCCCeeEEEecc---ceEEEEecCcceeeeeeeccCC-ceEEEcCCCCEEEEE-ecCC--eEE
Q 026679 7 LRYFKGHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAVA-MEAG--AIK 79 (235)
Q Consensus 7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~~dg--~v~ 79 (235)
.+.+..+...+....|+|||+.|+..+.+ ..|.+||+.+++.......... ....|+|+|+.|+.. ..+| .|.
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 34455667788999999999988776543 3689999988865544333322 248999999988754 4444 678
Q ss_pred EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-C--CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC
Q 026679 80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N--NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG 156 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 156 (235)
++|+.++.. ..+..+........|+|||+.++..+. + ..|+++|+.+++.... .... .......|+|+|
T Consensus 271 ~~d~~~~~~-----~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~--~~~~~~~~Spdg 342 (430)
T PRK00178 271 VMDLASRQL-----SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVG--NYNARPRLSADG 342 (430)
T ss_pred EEECCCCCe-----EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCC--CCccceEECCCC
Confidence 888877543 223334445667889999998877664 3 3588888877765432 2222 223457899999
Q ss_pred cEEEEeCCC-C--cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-----cceEEeeCCCCCCCCC
Q 026679 157 QYVVSGSGD-G--TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNSTD 221 (235)
Q Consensus 157 ~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~iw~~~~~~~~~~ 221 (235)
++|+..+.+ + .|.++|+.+++.. .+. .........|+|+|+.++.++ ..+.+++.++.....+
T Consensus 343 ~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 343 KTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPL 413 (430)
T ss_pred CEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 999876543 3 5888999877643 232 122233568999999998775 2367777765544333
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=3.9e-16 Score=125.15 Aligned_cols=205 Identities=15% Similarity=0.180 Sum_probs=143.4
Q ss_pred cceeEEEeecC--CCeeEEEeccceEEEEecC-c----ceeeeeeec---------cCCceEEEcCCCCEEEEEecCCeE
Q 026679 15 ERVISLCMSPV--NDSFMSGSLDHSVRIWDLR-V----NACQGILRL---------RGRPTVAFDQQGLVFAVAMEAGAI 78 (235)
Q Consensus 15 ~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~-~----~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~dg~v 78 (235)
..|+.+.+-.+ ..++++|+.||.||||+-- + .+.+..+.. .....+.|......|++++.-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 57888888663 4689999999999999742 2 122222211 012237788777777777778999
Q ss_pred EEEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCce---eeeeccCCCCCcceeeEEeC
Q 026679 79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEK---RCGFSLEPSPNTNTEATFTP 154 (235)
Q Consensus 79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~i~~~~~~~ 154 (235)
+|||...... ..-...+...-++++.-+- .|+.+++|..||.|++||.+.... +..++.+....+|..+.+.+
T Consensus 1190 RIWDa~~E~~---~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1190 RIWDAHKEQV---VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred EEEeccccee---EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec
Confidence 9999987553 1111122334566554433 478999999999999999986543 34444444444599999998
Q ss_pred CCc-EEEEeCCCCcEEEEEcCCCceeee--ecCCC--c-ceeEEEeecCCCEEEEcc-cceEEeeCCCCCCCCCC
Q 026679 155 DGQ-YVVSGSGDGTLHAWNINTRNEVAC--WNGNI--G-VVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNSTDE 222 (235)
Q Consensus 155 ~~~-~l~~~~~dg~i~v~d~~~~~~~~~--~~~~~--~-~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~~~~~~ 222 (235)
.|- .|++|+.+|.|++||++....... +..|. + ..+++..+++...+++|+ +.++||++.+..+..+.
T Consensus 1267 ~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1267 QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccc
Confidence 665 499999999999999987433222 22232 3 589999999999999999 88999999987766554
No 211
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.74 E-value=8.1e-17 Score=120.52 Aligned_cols=179 Identities=12% Similarity=0.184 Sum_probs=139.6
Q ss_pred CeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCccee
Q 026679 27 DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 104 (235)
Q Consensus 27 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~ 104 (235)
..|+.++.||.+.+-+ +.++..+.+..|...+ -.|+|+|.-|+++++||.|++|.-..+- ...+-....+|+
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML-----RStl~Q~~~~v~ 149 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML-----RSTVVQNEESIR 149 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH-----HHHHhhcCceeE
Confidence 4688889999998887 5677777777777544 7899999999999999999999865432 223334557899
Q ss_pred EEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecC
Q 026679 105 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG 184 (235)
Q Consensus 105 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 184 (235)
|++|.|+.+.++.+. .+.+.+=.+.....+ +....|.+-|.++.|+|..+.+++|++|-..+|||. .|..+..-..
T Consensus 150 c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~--i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~ 225 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQ-GGHISIKPLAANSKI--IRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAA 225 (737)
T ss_pred EEEECCCCCceEEec-CCeEEEeecccccce--eEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCCh
Confidence 999999988777654 445666666554433 455667788999999999999999999999999996 6778888888
Q ss_pred CCcceeEEEeecCCCEEEEcc-cceEEeeCCCC
Q 026679 185 NIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPS 216 (235)
Q Consensus 185 ~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~ 216 (235)
|+.+|++++|.|+ ..++.++ +++++=.++.+
T Consensus 226 ~ey~ITSva~npd-~~~~v~S~nt~R~~~p~~G 257 (737)
T KOG1524|consen 226 EEYAITSVAFNPE-KDYLLWSYNTARFSSPRVG 257 (737)
T ss_pred hccceeeeeeccc-cceeeeeeeeeeecCCCcc
Confidence 9999999999999 6666666 66664444433
No 212
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=4.8e-17 Score=117.96 Aligned_cols=159 Identities=15% Similarity=0.150 Sum_probs=121.2
Q ss_pred ceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee
Q 026679 58 PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG 137 (235)
Q Consensus 58 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 137 (235)
.+++++++|..+++++.||.+++|+...... ......|...|.++.|+|||+.|++.+.| ..++|+..++..+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t----~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT----ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh----hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 3589999999999999999999999766554 55566788999999999999999999999 899999999977776
Q ss_pred eccCCCCCcceeeEEeCCC---c--EEEEeCCCCcEEEEEcCCCce-----eeeecCCCcceeEEEeecCCCEEEEcc--
Q 026679 138 FSLEPSPNTNTEATFTPDG---Q--YVVSGSGDGTLHAWNINTRNE-----VACWNGNIGVVACLKWAPRRAMFVAAS-- 205 (235)
Q Consensus 138 ~~~~~~~~~i~~~~~~~~~---~--~l~~~~~dg~i~v~d~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~-- 205 (235)
......+.....+.|+.++ . .++....-+.|+.||+..... ..........|++++.+++|++++.|+
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 6645555667778898877 2 333334456677776643221 111112235799999999999999998
Q ss_pred cceEEeeCCCCCCCCC
Q 026679 206 SVLSFWIPNPSSNSTD 221 (235)
Q Consensus 206 ~~i~iw~~~~~~~~~~ 221 (235)
|++-|++...-+...+
T Consensus 303 GsVai~~~~~lq~~~~ 318 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQY 318 (398)
T ss_pred CcEEEEEeceeeeeEe
Confidence 8899999876554443
No 213
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=1.8e-17 Score=129.74 Aligned_cols=206 Identities=17% Similarity=0.209 Sum_probs=147.6
Q ss_pred CchhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeE
Q 026679 1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAI 78 (235)
Q Consensus 1 l~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v 78 (235)
++++.++..++||++.|+.++.+.+..+++++|.|..|++|.+.++.++..+.+|...+ ++|+|-. +.+.||++
T Consensus 219 ~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~ 294 (1113)
T KOG0644|consen 219 METARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTC 294 (1113)
T ss_pred ccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCce
Confidence 46788999999999999999999988899999999999999999999999999998655 8899854 77889999
Q ss_pred EEEeccC-CCCCCceeEeecCCCcceeE--------------------------EEEccCCCeEEEe-----------cC
Q 026679 79 KLFDSRS-YDKGPFDTFLVGGDTAEVCD--------------------------IKFSNDGKSMLLT-----------TT 120 (235)
Q Consensus 79 ~i~d~~~-~~~~~~~~~~~~~~~~~v~~--------------------------~~~~~~~~~l~~~-----------~~ 120 (235)
++||.+- ........... .....+.+ ++|....-.+++. -.
T Consensus 295 ~~wd~r~~~~~y~prp~~~-~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~ 373 (1113)
T KOG0644|consen 295 RIWDARLEPRIYVPRPLKF-TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARN 373 (1113)
T ss_pred EeccccccccccCCCCCCc-ccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeee
Confidence 9999871 11000000000 00011222 2222222222222 22
Q ss_pred CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc-EEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCC
Q 026679 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA 199 (235)
Q Consensus 121 d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 199 (235)
+-.+.+|++.+++..+....+. ..+..+.++|-.. ...+++.||...|||+-.|.++..+....+.+..-+|+++|.
T Consensus 374 ~~~~~vwnl~~g~l~H~l~ghs--d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgt 451 (1113)
T KOG0644|consen 374 DHRLCVWNLYTGQLLHNLMGHS--DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGT 451 (1113)
T ss_pred eeEeeeeecccchhhhhhcccc--cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCc
Confidence 4457778888887776655544 4477799999544 456889999999999998888776653346677789999999
Q ss_pred EEEEcc--cceEEeeC
Q 026679 200 MFVAAS--SVLSFWIP 213 (235)
Q Consensus 200 ~l~~~~--~~i~iw~~ 213 (235)
.++... |.+.|...
T Consensus 452 s~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 452 SIALSDDHGQLYILGT 467 (1113)
T ss_pred eEecCCCCCceEEecc
Confidence 998887 66777655
No 214
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=9.4e-15 Score=113.61 Aligned_cols=202 Identities=17% Similarity=0.221 Sum_probs=129.9
Q ss_pred hcccccceeEEEeecCCCeeEEEecc-c--eEEEEecCcceeeeeeeccCC-ceEEEcCCCCEEEE-EecCCe--EEEEe
Q 026679 10 FKGHKERVISLCMSPVNDSFMSGSLD-H--SVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAV-AMEAGA--IKLFD 82 (235)
Q Consensus 10 ~~~h~~~v~~~~~~~~~~~l~s~~~d-~--~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~-~~~dg~--v~i~d 82 (235)
+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++.......... ...+|+|+|+.|+. ...+|. |.++|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 33445567889999999988876543 2 588899988765443333322 34899999998765 455664 77778
Q ss_pred ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-C--CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEE
Q 026679 83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N--NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV 159 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 159 (235)
+.+++. ..+..+.......+|+|||+.++..+. + ..|+++|+.+++.... ..... .....+|+|||++|
T Consensus 293 l~tg~~-----~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~--~~~~~~~SpDG~~l 364 (448)
T PRK04792 293 IATKAL-----TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGE--QNLGGSITPDGRSM 364 (448)
T ss_pred CCCCCe-----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCC--CCcCeeECCCCCEE
Confidence 766542 223334445667899999998877654 3 3577778877765432 22222 23457899999998
Q ss_pred EEeCC-CC--cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-----cceEEeeCCCCCCCCC
Q 026679 160 VSGSG-DG--TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNSTD 221 (235)
Q Consensus 160 ~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~iw~~~~~~~~~~ 221 (235)
+..+. ++ .|.++|+.+++.. .+... .......|+|+|+.|+..+ ..+.+++.++.....+
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l 432 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARL 432 (448)
T ss_pred EEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 77654 33 4666788777643 23222 1223458999999988765 2377777766554444
No 215
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.72 E-value=3.9e-15 Score=112.46 Aligned_cols=186 Identities=13% Similarity=0.195 Sum_probs=150.0
Q ss_pred cCCCeeEEEeccceEEEEecCcceeeeeeeccC---Cce--EEE--------------------cCCCCEEEEEecCCeE
Q 026679 24 PVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG---RPT--VAF--------------------DQQGLVFAVAMEAGAI 78 (235)
Q Consensus 24 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---~~~--~~~--------------------~~~~~~l~~~~~dg~v 78 (235)
|...++|....||.+++||...++....+.... ..+ ..| +.+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 445789999999999999999887766654321 111 222 1234567888889999
Q ss_pred EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679 79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 158 (235)
Q Consensus 79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (235)
.+|+...++. ........|.+.|.++.++.+-..|.+++.|+.+..|+....+..+.+.... ..+.+++.+|||..
T Consensus 83 ~~ys~~~g~i--t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~--~~~~sl~is~D~~~ 158 (541)
T KOG4547|consen 83 LLYSVAGGEI--TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK--PLVSSLCISPDGKI 158 (541)
T ss_pred EEEEecCCeE--EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC--CccceEEEcCCCCE
Confidence 9999988764 2233446799999999999999999999999999999999998888776554 44888999999999
Q ss_pred EEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecC-----CCEEEEcc---cceEEeeCCC
Q 026679 159 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR-----RAMFVAAS---SVLSFWIPNP 215 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~---~~i~iw~~~~ 215 (235)
|++++. .|.+||+++++.+..+.+|.++|.+++|..+ |.+++++. ..+.+|-.+.
T Consensus 159 l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 159 LLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 998874 6999999999999999999999999999887 78888776 5588888765
No 216
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.3e-15 Score=108.25 Aligned_cols=208 Identities=15% Similarity=0.239 Sum_probs=149.4
Q ss_pred hhhhhhc-ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC----ceEEEcCCCCEEEEEecCCeEE
Q 026679 5 RILRYFK-GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR----PTVAFDQQGLVFAVAMEAGAIK 79 (235)
Q Consensus 5 ~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~dg~v~ 79 (235)
+++.... .|...|.|++|.....++++|..+++|..-|+++.+.+..+..... .-+..+|..+.|++.+.++.|.
T Consensus 95 KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~ 174 (609)
T KOG4227|consen 95 KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVS 174 (609)
T ss_pred CCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEE
Confidence 3344333 3568999999999889999999999999999999988887765542 2278899999999999999999
Q ss_pred EEeccCCCCCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCcee-----------------------
Q 026679 80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKR----------------------- 135 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~----------------------- 135 (235)
+||.+.... +...+...........+.|+|. ..+|++.+..+-+.+||.+.....
T Consensus 175 ~~D~Rd~~~-~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~ 253 (609)
T KOG4227|consen 175 FIDNRDRQN-PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS 253 (609)
T ss_pred EEeccCCCC-CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeC
Confidence 999987652 2223334444566778889984 566777788888899997532110
Q ss_pred -------------------------eeeccC-CC-----CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCC--------
Q 026679 136 -------------------------CGFSLE-PS-----PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR-------- 176 (235)
Q Consensus 136 -------------------------~~~~~~-~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-------- 176 (235)
..++.. .. ...+.+++|..+- -+++|+.+-.|++|.+...
T Consensus 254 ~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~ 332 (609)
T KOG4227|consen 254 PSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQ 332 (609)
T ss_pred CCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccc
Confidence 000000 00 0223345554433 4889999999999998531
Q ss_pred ---------------ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679 177 ---------------NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 214 (235)
Q Consensus 177 ---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~ 214 (235)
+.+..+++|.+.+..+.|+|...+|++++ +.+++|...
T Consensus 333 IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 333 IGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred cCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 12455789999999999999988888887 779999753
No 217
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=7e-17 Score=119.32 Aligned_cols=119 Identities=23% Similarity=0.467 Sum_probs=94.8
Q ss_pred CcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc------------eee-eeccCCCCCcceeeEE-eCCCcEEEEeCCC
Q 026679 100 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE------------KRC-GFSLEPSPNTNTEATF-TPDGQYVVSGSGD 165 (235)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~------------~~~-~~~~~~~~~~i~~~~~-~~~~~~l~~~~~d 165 (235)
.-.|++++++.++.-|+++..|-.|+++.-.-+. ..+ .++.|.....|..+-| -|...|+++|+.-
T Consensus 336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC 415 (559)
T KOG1334|consen 336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC 415 (559)
T ss_pred cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc
Confidence 3468999999888888888889999999543221 111 2455555555666654 6788999999999
Q ss_pred CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679 166 GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 166 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~ 218 (235)
|.|.||+-.+++.+..+.+....|.||.=+|.-..|++++ .+|+||...+...
T Consensus 416 GhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 416 GHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred ceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcccc
Confidence 9999999999999998888777999999999999999998 8899998855443
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=6.9e-15 Score=103.50 Aligned_cols=178 Identities=11% Similarity=0.217 Sum_probs=128.0
Q ss_pred ceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCe
Q 026679 36 HSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS 114 (235)
Q Consensus 36 ~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 114 (235)
..|.|||-...+++..+.... +..+.+.++ .+++.. .+.|.+|.....- ...........+..+.+++-..+...
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~-k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNP-KLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCCh-hheeeeecccCCCceEeecCCCCceE
Confidence 469999966666776666544 333555544 455543 4689999887422 12223333333445555544444455
Q ss_pred EEEe-cCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCc-EEEEEcCCCceeeeecCC--Cccee
Q 026679 115 MLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT-LHAWNINTRNEVACWNGN--IGVVA 190 (235)
Q Consensus 115 l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~~~--~~~v~ 190 (235)
|+.- -.-|.|++-|+...+.-.......|...|.+++++.+|..+|+++..|+ |+|||..+|+.+.++..- ...|.
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 5553 3479999999987665333455677788999999999999999999998 899999999999988632 35899
Q ss_pred EEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679 191 CLKWAPRRAMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 191 ~~~~~~~~~~l~~~~--~~i~iw~~~~~~ 217 (235)
+|+|+|++.+|+++| |++.|+.++...
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 999999999999998 999999987644
No 219
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.4e-15 Score=113.54 Aligned_cols=208 Identities=12% Similarity=0.215 Sum_probs=148.1
Q ss_pred hhhhhcccccceeEEEeecCCCe-eEEEeccceEEEEecCcceeee----------------------------eeeccC
Q 026679 6 ILRYFKGHKERVISLCMSPVNDS-FMSGSLDHSVRIWDLRVNACQG----------------------------ILRLRG 56 (235)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~i~vwd~~~~~~~~----------------------------~~~~~~ 56 (235)
+++.| .|...-+.|..+|||++ +|+|..--.|++||+.+-.... .+..|.
T Consensus 44 LiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa 122 (703)
T KOG2321|consen 44 LIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA 122 (703)
T ss_pred HHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehh
Confidence 34444 36778889999999998 5677778899999986432111 011111
Q ss_pred ---------Cc----eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCc
Q 026679 57 ---------RP----TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN 123 (235)
Q Consensus 57 ---------~~----~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 123 (235)
++ -++++.-..-|++++....|+-++++.+.. ...+......++++..++-..+|++|+.+|.
T Consensus 123 k~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf----L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 123 KYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF----LNPFETDSGELNVVSINEEHGLLACGTEDGV 198 (703)
T ss_pred hcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccc----ccccccccccceeeeecCccceEEecccCce
Confidence 01 133333222345555556788888877654 3333344578999999998889999999999
Q ss_pred EEEEEcCCCceeeeeccCC----CC-----CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec-CCCcceeEEE
Q 026679 124 IYVLDAYGGEKRCGFSLEP----SP-----NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIGVVACLK 193 (235)
Q Consensus 124 i~~~d~~~~~~~~~~~~~~----~~-----~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~ 193 (235)
|..||.+....+..+.... ++ ..|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-. +..-+|..+.
T Consensus 199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~ 278 (703)
T KOG2321|consen 199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLD 278 (703)
T ss_pred EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeec
Confidence 9999999877665544322 22 348999999999999999999999999999988875543 2245899999
Q ss_pred eecC--CCEEEEcc-cceEEeeCCCCCC
Q 026679 194 WAPR--RAMFVAAS-SVLSFWIPNPSSN 218 (235)
Q Consensus 194 ~~~~--~~~l~~~~-~~i~iw~~~~~~~ 218 (235)
|.+. ...+++.+ ..++|||-.+++.
T Consensus 279 ~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 279 WQDTDQQNKVVSMDKRILKIWDECTGKP 306 (703)
T ss_pred ccccCCCceEEecchHHhhhcccccCCc
Confidence 9875 67788888 7799999876654
No 220
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=6.8e-17 Score=118.75 Aligned_cols=204 Identities=12% Similarity=0.153 Sum_probs=166.3
Q ss_pred eEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEee
Q 026679 18 ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV 96 (235)
Q Consensus 18 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 96 (235)
..+.++.+|++++.|+..|.|-.+|..+++....+.... +..+.|-.+..++|++- ...+++||-..-+ ...+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtE-----lHCl 206 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTE-----LHCL 206 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcE-----Eeeh
Confidence 567888899999999999999999999999888877654 34478887777777764 4689999865433 2222
Q ss_pred cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCC
Q 026679 97 GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR 176 (235)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 176 (235)
. ....|..+.|-|..-+|++++..|.+..-|+.+|+.+..+.... +.+..|+-+|-+..+-+|...|+|.+|.....
T Consensus 207 k-~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~--G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 207 K-RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA--GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred h-hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC--CccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 2 23578889999998889999999999999999999988776544 55777899999999999999999999999999
Q ss_pred ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC-CCCCCCCCCCCCCc
Q 026679 177 NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS-SNSTDESTDPQATV 230 (235)
Q Consensus 177 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~-~~~~~~~~~~~~~i 230 (235)
+++..+..|.++|.+|++.++|+|+++++ ..++|||+..- ++.+.....|...+
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~l 340 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNL 340 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccc
Confidence 99988989999999999999999999998 77999999754 44444444444443
No 221
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.2e-15 Score=118.25 Aligned_cols=170 Identities=18% Similarity=0.266 Sum_probs=118.7
Q ss_pred eeEEEeecCCCeeEEEe-ccceEEEE--ecCcceeeeeeeccC-CceEEEcCCCCEEEEEe-cCCeEEEEeccCCCCCCc
Q 026679 17 VISLCMSPVNDSFMSGS-LDHSVRIW--DLRVNACQGILRLRG-RPTVAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPF 91 (235)
Q Consensus 17 v~~~~~~~~~~~l~s~~-~d~~i~vw--d~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~ 91 (235)
...++|+|||+.|+.++ .+|.+.|| |+.++.......... .....|+|+|+.|+..+ .+|...+|++.......
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~- 328 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA- 328 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-
Confidence 34689999999887764 67766555 665555433322222 23499999999777655 57888999876533211
Q ss_pred eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEE
Q 026679 92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW 171 (235)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~ 171 (235)
. .. .+.. ....|+|+|+++++.+.++ +.+||+.+++...... . . ....+.|+|+|++|+.++.++...+|
T Consensus 329 -~-~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~-~--~~~~~~~sPdG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 329 -S-LV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-T-F--LDESPSISPNGIMIIYSSTQGLGKVL 398 (429)
T ss_pred -E-Ee-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-C-C--CCCCceECCCCCEEEEEEcCCCceEE
Confidence 1 11 2222 4578999999998887755 6669998887543221 1 1 23567899999999999989888888
Q ss_pred Ec--CCCceeeeecCCCcceeEEEeecC
Q 026679 172 NI--NTRNEVACWNGNIGVVACLKWAPR 197 (235)
Q Consensus 172 d~--~~~~~~~~~~~~~~~v~~~~~~~~ 197 (235)
++ .+++.+..+..|.+.+...+|+|-
T Consensus 399 ~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 399 QLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEECCCCceEEccCCCCCCCCcccCCC
Confidence 75 368888888888888999999984
No 222
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.1e-14 Score=112.38 Aligned_cols=210 Identities=15% Similarity=0.164 Sum_probs=129.4
Q ss_pred hhcccccceeEEEeecCCCe--e-EEEeccc--eEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEEEec-CC----e
Q 026679 9 YFKGHKERVISLCMSPVNDS--F-MSGSLDH--SVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAME-AG----A 77 (235)
Q Consensus 9 ~~~~h~~~v~~~~~~~~~~~--l-~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~-dg----~ 77 (235)
.+......+.+-+|+|||+. + ++...++ .|.+.++..++........... ..+|+|||+.|+..+. +| .
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence 34444556677899999975 2 2443333 5777888877655554444433 3899999988887653 23 3
Q ss_pred EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEec-CCCc--EEEEEcCC-CceeeeeccCCCCCcceeeEEe
Q 026679 78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNN--IYVLDAYG-GEKRCGFSLEPSPNTNTEATFT 153 (235)
Q Consensus 78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~--i~~~d~~~-~~~~~~~~~~~~~~~i~~~~~~ 153 (235)
+..|++..+..... ..............+|+|||+.|+..+ .+|. |+++++.. +.....+.. ....+....|+
T Consensus 259 ~~~~~~~~g~~g~~-~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~--~~~~~~~p~wS 335 (428)
T PRK01029 259 IQSFSLETGAIGKP-RRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK--KYRNSSCPAWS 335 (428)
T ss_pred EEEeecccCCCCcc-eEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc--CCCCccceeEC
Confidence 44466654321111 111222223345689999999888765 3564 44445432 222222222 22346678999
Q ss_pred CCCcEEEEeCCC---CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-----cceEEeeCCCCCCCCCC
Q 026679 154 PDGQYVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNSTDE 222 (235)
Q Consensus 154 ~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~iw~~~~~~~~~~~ 222 (235)
|||++|+..+.+ ..|.+||+.+++... +......+....|+|||+.|+... ..+.++++++++...+.
T Consensus 336 PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 336 PDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 999998876543 469999998887643 332334567899999999887543 45888888776554443
No 223
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=5.5e-15 Score=116.24 Aligned_cols=207 Identities=15% Similarity=0.267 Sum_probs=143.3
Q ss_pred hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccC
Q 026679 8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRS 85 (235)
Q Consensus 8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~ 85 (235)
+.|.-|..+|.+++|+++|.+|++|+..+.+.+|.+.+++ .+.++.-+.++ +.++||+...+....|..|.+....+
T Consensus 245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred eEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence 4466788999999999999999999999999999999988 44444444444 89999999999999999999988755
Q ss_pred CCCCCceeEe-------ecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec-------------------
Q 026679 86 YDKGPFDTFL-------VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS------------------- 139 (235)
Q Consensus 86 ~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~------------------- 139 (235)
.......... .....+-.+.++++|..+.++..+..|.|.+||+.+.+.+..+.
T Consensus 324 l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~ita 403 (792)
T KOG1963|consen 324 LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITA 403 (792)
T ss_pred hhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeee
Confidence 4321110000 11123445667788866667777788888888875443322211
Q ss_pred -----------------------------------------------cCCCCCcceeeEE-eCCCc-EEEEeCCCCcEEE
Q 026679 140 -----------------------------------------------LEPSPNTNTEATF-TPDGQ-YVVSGSGDGTLHA 170 (235)
Q Consensus 140 -----------------------------------------------~~~~~~~i~~~~~-~~~~~-~l~~~~~dg~i~v 170 (235)
..+|...+...++ +|... .+++++.||.+++
T Consensus 404 v~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~Ki 483 (792)
T KOG1963|consen 404 VARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKI 483 (792)
T ss_pred ehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEE
Confidence 1122222222223 23222 7888999999999
Q ss_pred EEcCCCc----------eeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCC
Q 026679 171 WNINTRN----------EVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP 215 (235)
Q Consensus 171 ~d~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~ 215 (235)
|-+.+.+ +...-.-|..++..++|+.||..|+.+- +.|.+||+.+
T Consensus 484 W~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 484 WVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 9984322 2222223678999999999999988886 8899999987
No 224
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=1.2e-15 Score=114.23 Aligned_cols=200 Identities=18% Similarity=0.300 Sum_probs=134.0
Q ss_pred eEEEeecCCCeeEEEeccceEEEEecCcceee------eeeeccCCceEEE-----cCCCCEEEEEecCCeEEEEeccCC
Q 026679 18 ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ------GILRLRGRPTVAF-----DQQGLVFAVAMEAGAIKLFDSRSY 86 (235)
Q Consensus 18 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~------~~~~~~~~~~~~~-----~~~~~~l~~~~~dg~v~i~d~~~~ 86 (235)
+...++-.|.+|+-.- ...+++|+.+.+... ..++.....+-+| .|.+--+++|-..|.+.+.|....
T Consensus 127 ~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~ 205 (636)
T KOG2394|consen 127 TNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF 205 (636)
T ss_pred eeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh
Confidence 3344444455544322 235888887643211 1222222233333 346677899999999999997763
Q ss_pred CCCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCC--------------Cceeeee------------c
Q 026679 87 DKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYG--------------GEKRCGF------------S 139 (235)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~--------------~~~~~~~------------~ 139 (235)
+...+......-....|+++.|-|. ...++++-.+|.+++||..- +...... .
T Consensus 206 ~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~ 285 (636)
T KOG2394|consen 206 EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVAR 285 (636)
T ss_pred HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccce
Confidence 3211111222223478999999994 44566677899999997631 1111111 1
Q ss_pred cCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679 140 LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 140 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~ 217 (235)
.+...+.|...+|+|||++||+.+.||.++|||..+.+++..++..-+...|++|+|||+||++|+ .-+.||.+...+
T Consensus 286 w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 286 WHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred eEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccce
Confidence 112235788899999999999999999999999999998888877778899999999999999999 339999997654
Q ss_pred C
Q 026679 218 N 218 (235)
Q Consensus 218 ~ 218 (235)
+
T Consensus 366 V 366 (636)
T KOG2394|consen 366 V 366 (636)
T ss_pred E
Confidence 3
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=8.6e-15 Score=113.33 Aligned_cols=172 Identities=17% Similarity=0.202 Sum_probs=117.8
Q ss_pred ceeEEEeecCCCeeEEE-eccc--eEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecC-CeEEEE--eccCCCC
Q 026679 16 RVISLCMSPVNDSFMSG-SLDH--SVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEA-GAIKLF--DSRSYDK 88 (235)
Q Consensus 16 ~v~~~~~~~~~~~l~s~-~~d~--~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d-g~v~i~--d~~~~~~ 88 (235)
.+....|+|||+.|+.. +.+| .|++||+++++......... .....|+|+|+.|+..+.+ +...+| |+.+++.
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 34568999999987754 4444 58899998877655544433 2348999999988777654 444555 5554332
Q ss_pred CCceeEeecCCCcceeEEEEccCCCeEEEecCC---CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679 89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 165 (235)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (235)
..+...........|+|||++++..+.+ ..|.+||+.+++... +... .......|+|||++|+.++.+
T Consensus 324 -----~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~---~~~~~p~~SpDG~~i~~~s~~ 394 (429)
T PRK03629 324 -----QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT---FLDETPSIAPNGTMVIYSSSQ 394 (429)
T ss_pred -----EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC---CCCCCceECCCCCEEEEEEcC
Confidence 1222233345678899999998876543 358899998876543 2211 123457899999999988876
Q ss_pred Cc---EEEEEcCCCceeeeecCCCcceeEEEeecC
Q 026679 166 GT---LHAWNINTRNEVACWNGNIGVVACLKWAPR 197 (235)
Q Consensus 166 g~---i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 197 (235)
+. +.++++ +++....+..|.+.+...+|+|-
T Consensus 395 ~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 395 GMGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 54 677777 56666777778888999999873
No 226
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=9.3e-17 Score=118.04 Aligned_cols=189 Identities=13% Similarity=0.150 Sum_probs=151.3
Q ss_pred cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCcee
Q 026679 15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT 93 (235)
Q Consensus 15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 93 (235)
..|.++.|-.+.+++|.+ ....++||| ..|..++.++.+... -+.|-|..-+|++++..|.++--|+.+++. .
T Consensus 171 Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl----V 244 (545)
T KOG1272|consen 171 ETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL----V 244 (545)
T ss_pred hhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhh----h
Confidence 467777777766666665 456899999 567777777766543 499999999999999999999999999875 3
Q ss_pred EeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 173 (235)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~ 173 (235)
..+....+.+..++-+|-...+-+|..+|+|.+|.....+++..+ -.|.++|.++++.++|+|+++.+.|..++|||+
T Consensus 245 a~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi--LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 245 ASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI--LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred HHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH--HhcCCCcceEEECCCCcEEeecccccceeEeee
Confidence 333334466777888888888889999999999999888877544 456678999999999999999999999999999
Q ss_pred CCCceeeeecCCCcceeEEEeecCCCEEEEcccceEEee
Q 026679 174 NTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWI 212 (235)
Q Consensus 174 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw~ 212 (235)
++...+.++.. ..+...+++|..|.+.++-+..+.||.
T Consensus 323 R~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 323 RNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred ccccccceeec-CCCccccccccccceeeecCCeeeeeh
Confidence 99887777754 456788999987766555567799995
No 227
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.68 E-value=3.4e-15 Score=105.76 Aligned_cols=184 Identities=17% Similarity=0.182 Sum_probs=126.6
Q ss_pred EEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEE-EEecCCeEEEEeccCCCCCCceeEee
Q 026679 19 SLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDTFLV 96 (235)
Q Consensus 19 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~dg~v~i~d~~~~~~~~~~~~~~ 96 (235)
-.+|||+|+++|+++.. .+.|-|.++-+..+.+..-. +.-+.|..+..+++ ....++.|.+|++...+. ..+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew----~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW----YCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeeccee----EEEe
Confidence 35799999999999876 78888888777666554433 33388888776655 456788999999987664 6667
Q ss_pred cCCCcceeEEEEccCCCeEEEe-cCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC----------
Q 026679 97 GGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD---------- 165 (235)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------- 165 (235)
.....++..++|+|||+.++.. .-+-+|.+|.+.+.+.... +... ..+..++|+|||++.+..+..
T Consensus 88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK--~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPK--TNVKGYAFHPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccc--cCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence 7778889999999999776655 4588999999988765533 2222 235778999999988766531
Q ss_pred --------------------------CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEe
Q 026679 166 --------------------------GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFW 211 (235)
Q Consensus 166 --------------------------g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw 211 (235)
..+.|||.--.-.+..+. ..-.+..++|+|.+++|+.|+ +.++|.
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhh
Confidence 223444422111111111 123577788888888888887 445554
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.68 E-value=4.1e-14 Score=106.82 Aligned_cols=216 Identities=17% Similarity=0.192 Sum_probs=136.8
Q ss_pred hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEe-cCCeEEE
Q 026679 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAM-EAGAIKL 80 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~-~dg~v~i 80 (235)
+++.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+..++....+. ++++++|++++++. .++.+.+
T Consensus 25 t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 25 TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSV 104 (369)
T ss_dssp T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEE
T ss_pred CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeE
Confidence 456667776554444557899999999999999999999999999999988766544 99999999988775 5899999
Q ss_pred EeccCCCCCCc--------------------------eeEeec---------------------CCCcceeEEEEccCCC
Q 026679 81 FDSRSYDKGPF--------------------------DTFLVG---------------------GDTAEVCDIKFSNDGK 113 (235)
Q Consensus 81 ~d~~~~~~~~~--------------------------~~~~~~---------------------~~~~~v~~~~~~~~~~ 113 (235)
+|.++.+.... ....+. ..........|+|+++
T Consensus 105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgr 184 (369)
T PF02239_consen 105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGR 184 (369)
T ss_dssp EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSS
T ss_pred eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccc
Confidence 99876432100 000000 0112344678899998
Q ss_pred eEEEe-cCCCcEEEEEcCCCceeeeeccCC---------------------------------------C----------
Q 026679 114 SMLLT-TTNNNIYVLDAYGGEKRCGFSLEP---------------------------------------S---------- 143 (235)
Q Consensus 114 ~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~---------------------------------------~---------- 143 (235)
+++++ ..++.|.++|..+++......... +
T Consensus 185 y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~ 264 (369)
T PF02239_consen 185 YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKT 264 (369)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEE
T ss_pred eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEE
Confidence 87664 446678888887665543221000 0
Q ss_pred ---CCcceeeEEeCCCcEEEEe----CCCCcEEEEEcCCCceeeeecCC-CcceeEEEeecCCCEEEEcc---c-ceEEe
Q 026679 144 ---PNTNTEATFTPDGQYVVSG----SGDGTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAAS---S-VLSFW 211 (235)
Q Consensus 144 ---~~~i~~~~~~~~~~~l~~~----~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~---~-~i~iw 211 (235)
.+.-.-+..+|+++++.+. ...+.|.++|.++.+.+..+... ...+..+.|+++|+.+..+. + .|.+|
T Consensus 265 I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~ 344 (369)
T PF02239_consen 265 IPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVY 344 (369)
T ss_dssp EE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEE
T ss_pred EECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEE
Confidence 0111335679999999887 44588999999999877777532 23588999999999887775 3 69999
Q ss_pred eCCCCCC
Q 026679 212 IPNPSSN 218 (235)
Q Consensus 212 ~~~~~~~ 218 (235)
|..+.+.
T Consensus 345 D~~Tl~~ 351 (369)
T PF02239_consen 345 DAKTLKE 351 (369)
T ss_dssp ETTTTEE
T ss_pred ECCCcEE
Confidence 9877543
No 229
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.68 E-value=1e-15 Score=105.13 Aligned_cols=158 Identities=13% Similarity=0.143 Sum_probs=114.7
Q ss_pred ccceeEEEeec-CCC--eeEEEeccceEEEEecCcceeeeee----------eccCCce--EEEcCCCCEEEEEecCCeE
Q 026679 14 KERVISLCMSP-VND--SFMSGSLDHSVRIWDLRVNACQGIL----------RLRGRPT--VAFDQQGLVFAVAMEAGAI 78 (235)
Q Consensus 14 ~~~v~~~~~~~-~~~--~l~s~~~d~~i~vwd~~~~~~~~~~----------~~~~~~~--~~~~~~~~~l~~~~~dg~v 78 (235)
.+.+.|..+.. ++. ++++|-.+|.+.+||+.++..+-.+ ..+..++ +.+.+.-..=++|+.+..+
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl 229 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL 229 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence 35666666533 333 4677888999999999887433222 2333333 5555554555677777788
Q ss_pred EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679 79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 158 (235)
Q Consensus 79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (235)
..|++..............-.+-.+..+..-||++.+++++.|++|++|..++.+++..++.|. ..|++++|+|+...
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs--agvn~vAfspd~~l 307 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS--AGVNAVAFSPDCEL 307 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh--cceeEEEeCCCCch
Confidence 8888765422111111112223457888999999999999999999999999999998877665 66999999999999
Q ss_pred EEEeCCCCcEEEEEc
Q 026679 159 VVSGSGDGTLHAWNI 173 (235)
Q Consensus 159 l~~~~~dg~i~v~d~ 173 (235)
+|+++.|+.|.+|++
T Consensus 308 mAaaskD~rISLWkL 322 (323)
T KOG0322|consen 308 MAAASKDARISLWKL 322 (323)
T ss_pred hhhccCCceEEeeec
Confidence 999999999999986
No 230
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=3.5e-14 Score=99.99 Aligned_cols=158 Identities=11% Similarity=0.247 Sum_probs=122.8
Q ss_pred cccceeEEEeecCCCeeEEEeccceEEEEecC-cceeeeeeeccCCc--eEEEcCCC--CEEEE-EecCCeEEEEeccCC
Q 026679 13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLR-VNACQGILRLRGRP--TVAFDQQG--LVFAV-AMEAGAIKLFDSRSY 86 (235)
Q Consensus 13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~--~~~~~~~~--~~l~~-~~~dg~v~i~d~~~~ 86 (235)
...+|.++.+.++ +++..- ++.|+||... +.+.++.+.....+ .+++.|.. .+|+. |-.-|.|++-|+...
T Consensus 93 f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 93 FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence 3467888888753 455443 5789999987 45666666544422 35566632 33333 345699999999876
Q ss_pred CCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCc-EEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679 87 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN-IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 165 (235)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (235)
... .......|.+.|.|++.+.+|..+|+++..|+ |++||..+|+.++++........|.+++|||+..+|+++++.
T Consensus 170 ~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK 247 (346)
T KOG2111|consen 170 KPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK 247 (346)
T ss_pred CcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence 543 23456689999999999999999999999887 899999999999998877777889999999999999999999
Q ss_pred CcEEEEEcCC
Q 026679 166 GTLHAWNINT 175 (235)
Q Consensus 166 g~i~v~d~~~ 175 (235)
|+++||.++.
T Consensus 248 gTlHiF~l~~ 257 (346)
T KOG2111|consen 248 GTLHIFSLRD 257 (346)
T ss_pred CeEEEEEeec
Confidence 9999999875
No 231
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=4.1e-14 Score=101.44 Aligned_cols=198 Identities=14% Similarity=0.132 Sum_probs=127.7
Q ss_pred cccccceeEEEeecCCCeeEEEec-cceEEEEecCcceeeeeee-c-cCCceEEEcCCCCEEEEEecCCeEEEEeccCCC
Q 026679 11 KGHKERVISLCMSPVNDSFMSGSL-DHSVRIWDLRVNACQGILR-L-RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYD 87 (235)
Q Consensus 11 ~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 87 (235)
.|| .+|++|+|.+||..+++++. |..|.|||..++..+.... . .+...+.|+||+.+|+++.-|+..++|+....-
T Consensus 193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~w 271 (445)
T KOG2139|consen 193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW 271 (445)
T ss_pred CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccc
Confidence 456 79999999999999998875 6789999999988766652 2 334459999999999999999999999654322
Q ss_pred CCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce----e------e---e-----eccCCC----CC
Q 026679 88 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK----R------C---G-----FSLEPS----PN 145 (235)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----~------~---~-----~~~~~~----~~ 145 (235)
. .....-..+.|...+|+|.|+.|+..+.. .-.+|.+.-.+. . . . ...... .+
T Consensus 272 t----~erw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cg 346 (445)
T KOG2139|consen 272 T----KERWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCG 346 (445)
T ss_pred e----ecceeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccC
Confidence 1 11111223489999999999987765542 223343321100 0 0 0 000111 25
Q ss_pred cceeeEEeCCCcEEEEeCCCC--------cEEEEEcCCCceeeeec-C--CCcceeEEEeec---CCCEEEEc-c-cceE
Q 026679 146 TNTEATFTPDGQYVVSGSGDG--------TLHAWNINTRNEVACWN-G--NIGVVACLKWAP---RRAMFVAA-S-SVLS 209 (235)
Q Consensus 146 ~i~~~~~~~~~~~l~~~~~dg--------~i~v~d~~~~~~~~~~~-~--~~~~v~~~~~~~---~~~~l~~~-~-~~i~ 209 (235)
.+.+++|.|.|.+|++.-..+ .|..||.+....+.-.. + .......|.|+| ++.+|..+ + |.+.
T Consensus 347 eaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq 426 (445)
T KOG2139|consen 347 EAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQ 426 (445)
T ss_pred ccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceE
Confidence 688999999999999865433 37778876554432221 1 122356677776 45565554 2 6666
Q ss_pred EeeCC
Q 026679 210 FWIPN 214 (235)
Q Consensus 210 iw~~~ 214 (235)
-|.+.
T Consensus 427 ~ypl~ 431 (445)
T KOG2139|consen 427 RYPLT 431 (445)
T ss_pred eeeeE
Confidence 66654
No 232
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.65 E-value=1.3e-14 Score=116.18 Aligned_cols=193 Identities=16% Similarity=0.186 Sum_probs=155.2
Q ss_pred eeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce------EEEcCCCCEEEEEecCCeEEEEeccCCCCCC
Q 026679 17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT------VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP 90 (235)
Q Consensus 17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~ 90 (235)
|....+..+...++.+..+..+.+||...+.....+....... +..+++.-++++|+.-+.+.+|+....+. +
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~-p 168 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK-P 168 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC-c
Confidence 3444444556778888888999999998777666665544321 45677788899999999999999984332 2
Q ss_pred ceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEE
Q 026679 91 FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA 170 (235)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v 170 (235)
..+.+|.+.+..+.++-||+++++.++|.++++|++.+.+... ...-+|...+..+.|.|+ .++++++|.+.++
T Consensus 169 ---~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 169 ---IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLPN--RIITVGEDCTCRV 242 (967)
T ss_pred ---ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-cccccccceeEEEEeccc--eeEEeccceEEEE
Confidence 2577999999999999999999999999999999999988765 234467788999999998 9999999999999
Q ss_pred EEcCCCceeeeecCCCc-ceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679 171 WNINTRNEVACWNGNIG-VVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 171 ~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~ 217 (235)
|+. +++.+..+..|.. .|..++..++...+++++ +.+++|++....
T Consensus 243 W~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 243 WGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred Eec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 976 5666668887754 799999999988888887 789999987643
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=2.3e-13 Score=105.92 Aligned_cols=173 Identities=20% Similarity=0.261 Sum_probs=117.5
Q ss_pred ceEEEEecCcceeeeeeeccCC--ceEEEcCCCCEEEEEec---CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc
Q 026679 36 HSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAME---AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN 110 (235)
Q Consensus 36 ~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~---dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 110 (235)
..|.++|.+.... ..+..+.. ...+|+|+|+.|+..+. +..|.+||+.+++. ..+..+...+...+|+|
T Consensus 182 ~~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-----~~l~~~~g~~~~~~~SP 255 (435)
T PRK05137 182 KRLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-----ELVGNFPGMTFAPRFSP 255 (435)
T ss_pred eEEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-----EEeecCCCcccCcEECC
Confidence 4788888754443 33433333 33899999998888764 46899999987653 22334455677889999
Q ss_pred CCCeEEE-ecCCC--cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-C--CcEEEEEcCCCceeeeecC
Q 026679 111 DGKSMLL-TTTNN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-D--GTLHAWNINTRNEVACWNG 184 (235)
Q Consensus 111 ~~~~l~~-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~i~v~d~~~~~~~~~~~~ 184 (235)
||+.|+. .+.++ .|++||+.+++.... ..+........|+|||+.|+..+. + ..|+++|+..++.. .+..
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~L---t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~ 331 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGTTTRL---TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF 331 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCceEEc---cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec
Confidence 9998764 44444 488889888765432 223344567899999999887653 3 36888898665543 3433
Q ss_pred CCcceeEEEeecCCCEEEEcc---c--ceEEeeCCCCCC
Q 026679 185 NIGVVACLKWAPRRAMFVAAS---S--VLSFWIPNPSSN 218 (235)
Q Consensus 185 ~~~~v~~~~~~~~~~~l~~~~---~--~i~iw~~~~~~~ 218 (235)
+...+....|+|+|+.|+..+ + .+.+|++++...
T Consensus 332 ~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~ 370 (435)
T PRK05137 332 GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE 370 (435)
T ss_pred CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence 445567789999999998764 2 477788765443
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=4.3e-14 Score=102.05 Aligned_cols=174 Identities=14% Similarity=0.176 Sum_probs=131.5
Q ss_pred EEEeecCC-CeeEEEecc--ceEEEEecCcceeeeeeeccC-------Cce----EEEcCC--CCEEEEEecCCeEEEEe
Q 026679 19 SLCMSPVN-DSFMSGSLD--HSVRIWDLRVNACQGILRLRG-------RPT----VAFDQQ--GLVFAVAMEAGAIKLFD 82 (235)
Q Consensus 19 ~~~~~~~~-~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~-------~~~----~~~~~~--~~~l~~~~~dg~v~i~d 82 (235)
.|.-++.. ..+++|+.. ..+++||++..+.+..-+... +++ +.|-+. ...|++++.-+.+++||
T Consensus 153 ~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YD 232 (412)
T KOG3881|consen 153 DVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYD 232 (412)
T ss_pred eeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEec
Confidence 33334433 456779988 889999998875444332211 112 667776 78999999999999999
Q ss_pred ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679 83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 162 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (235)
.+.+.. |... +.-...+++++...|+++.++++...+.+..||++.++.... .+.+..+.++++..+|.+++|+++
T Consensus 233 t~~qRR-PV~~--fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~-~~kg~tGsirsih~hp~~~~las~ 308 (412)
T KOG3881|consen 233 TRHQRR-PVAQ--FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC-GLKGITGSIRSIHCHPTHPVLASC 308 (412)
T ss_pred CcccCc-ceeE--eccccCcceeeeecCCCcEEEEecccchhheecccCceeecc-ccCCccCCcceEEEcCCCceEEee
Confidence 996553 3333 334467899999999999999999999999999999887654 345566789999999999999999
Q ss_pred CCCCcEEEEEcCCCceeeeecCCCcceeEEEeecC
Q 026679 163 SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR 197 (235)
Q Consensus 163 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 197 (235)
+-|..++|+|+++.+++.... -.+.+++|-+.++
T Consensus 309 GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 309 GLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred ccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 999999999999977665543 3456777777664
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=5.6e-13 Score=100.73 Aligned_cols=187 Identities=15% Similarity=0.111 Sum_probs=128.1
Q ss_pred Cee-EEEeccceEEEEecCcceeeeeeeccCC-ce-EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcce
Q 026679 27 DSF-MSGSLDHSVRIWDLRVNACQGILRLRGR-PT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV 103 (235)
Q Consensus 27 ~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v 103 (235)
+++ ++-..++.|.+.|..+.+.+..+..... .. +.++||++++++++.||.|.++|+.+.+. ..... .....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~----v~~i~-~G~~~ 80 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV----VATIK-VGGNP 80 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE----EEEEE--SSEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE----EEEEe-cCCCc
Confidence 444 4566789999999999999999987543 23 78999999999999999999999998763 22222 23456
Q ss_pred eEEEEccCCCeEEEec-CCCcEEEEEcCCCceeeeeccCC-----CCCcceeeEEeCCCcE-EEEeCCCCcEEEEEcCCC
Q 026679 104 CDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSLEP-----SPNTNTEATFTPDGQY-VVSGSGDGTLHAWNINTR 176 (235)
Q Consensus 104 ~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~-l~~~~~dg~i~v~d~~~~ 176 (235)
.++++++||++++++. ..+.+.++|.++.+.++.+.... ....+..+..+|.... +++--+.+.|.+.|..+.
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 7899999999998776 58999999999999888765432 2245677888888774 455555688988898766
Q ss_pred ceee-eecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCCC
Q 026679 177 NEVA-CWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSN 218 (235)
Q Consensus 177 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~ 218 (235)
+.+. .............|+|++++++.+. +.+-++|.++.++
T Consensus 161 ~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 161 KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred cccceeeecccccccccccCcccceeeecccccceeEEEeeccceE
Confidence 5432 2222345678899999999988764 6688888876544
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.5e-13 Score=106.88 Aligned_cols=177 Identities=20% Similarity=0.127 Sum_probs=116.4
Q ss_pred ceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecC---CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccC
Q 026679 36 HSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 111 (235)
Q Consensus 36 ~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 111 (235)
..|.+||.............. ....+|+|+|+.|+..+.+ ..+.+||+.+++. ..+..........+|+||
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-----~~l~~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-----ELVASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-----EEeccCCCCccCceECCC
Confidence 468899986444433333222 2348999999998887643 4699999977553 122223344557899999
Q ss_pred CCeEEEe-cCCC--cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CCc--EEEEEcCCCceeeeecCC
Q 026679 112 GKSMLLT-TTNN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGT--LHAWNINTRNEVACWNGN 185 (235)
Q Consensus 112 ~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~v~d~~~~~~~~~~~~~ 185 (235)
|+.++.. +.++ .|++||+.+++.... . .+.......+|+|||++|+..+. +|. |+++|+.+++.. .+..+
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~l-t--~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~ 334 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLTRL-T--NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQ 334 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeEEC-c--cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecC
Confidence 9987643 4444 599999988775432 2 22233467899999998887654 444 777777666543 23223
Q ss_pred CcceeEEEeecCCCEEEEcc---c--ceEEeeCCCCCCCCC
Q 026679 186 IGVVACLKWAPRRAMFVAAS---S--VLSFWIPNPSSNSTD 221 (235)
Q Consensus 186 ~~~v~~~~~~~~~~~l~~~~---~--~i~iw~~~~~~~~~~ 221 (235)
......++|+|+|++|+..+ + .+.+|++.++....+
T Consensus 335 g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L 375 (433)
T PRK04922 335 GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTL 375 (433)
T ss_pred CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEEC
Confidence 33455789999999998764 2 488999877654433
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=4.3e-13 Score=104.04 Aligned_cols=176 Identities=15% Similarity=0.117 Sum_probs=109.4
Q ss_pred ceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecC---CeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc
Q 026679 36 HSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN 110 (235)
Q Consensus 36 ~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 110 (235)
..|.++|... .....+..+. ....+|+|+|+.|+..+.+ ..|.+||+.+++. ..+..........+|+|
T Consensus 176 ~~L~~~D~dG-~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-----~~l~~~~g~~~~~~~SP 249 (427)
T PRK02889 176 YQLQISDADG-QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-----RVVANFKGSNSAPAWSP 249 (427)
T ss_pred cEEEEECCCC-CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-----EEeecCCCCccceEECC
Confidence 4577777643 3323332332 3348999999998887643 4699999987653 12222334556889999
Q ss_pred CCCeEEE-ecCCCcEEEE--EcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CCcEEEEEc--CCCceeeeecC
Q 026679 111 DGKSMLL-TTTNNNIYVL--DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNI--NTRNEVACWNG 184 (235)
Q Consensus 111 ~~~~l~~-~~~d~~i~~~--d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~--~~~~~~~~~~~ 184 (235)
||+.|+. .+.++...+| |+..+... .+. .+........|+|||+.|+..+. +|...+|.+ .+++.. .+..
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt--~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~ 325 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGSGLR-RLT--QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTF 325 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCcE-ECC--CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEec
Confidence 9998875 5667765555 55544432 222 22234566889999998876554 455555554 444432 2222
Q ss_pred CCcceeEEEeecCCCEEEEcc--c---ceEEeeCCCCCCCCC
Q 026679 185 NIGVVACLKWAPRRAMFVAAS--S---VLSFWIPNPSSNSTD 221 (235)
Q Consensus 185 ~~~~v~~~~~~~~~~~l~~~~--~---~i~iw~~~~~~~~~~ 221 (235)
........+|+|+|++|+..+ + .+.+|++.++....+
T Consensus 326 ~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l 367 (427)
T PRK02889 326 TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL 367 (427)
T ss_pred CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc
Confidence 223345678999999998765 2 489999877654443
No 238
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.59 E-value=2.1e-13 Score=97.34 Aligned_cols=202 Identities=13% Similarity=0.193 Sum_probs=139.5
Q ss_pred ccceeEEEeecCCCeeEEEeccceEEEEecCcce-----eeeeeeccC--------------CceEEEcCCC--CEEEEE
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-----CQGILRLRG--------------RPTVAFDQQG--LVFAVA 72 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~~--------------~~~~~~~~~~--~~l~~~ 72 (235)
...|.++.|...|.+||+|..+|.|.++.-+... ....++.|. +..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3578899999999999999999999999643221 222233332 1227787754 568888
Q ss_pred ecCCeEEEEeccCCCCCC------------------ce--------------eEeecCCCcceeEEEEccCCCeEEEecC
Q 026679 73 MEAGAIKLFDSRSYDKGP------------------FD--------------TFLVGGDTAEVCDIKFSNDGKSMLLTTT 120 (235)
Q Consensus 73 ~~dg~v~i~d~~~~~~~~------------------~~--------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 120 (235)
+.|.++++|.++...... .. ......|...|.++.++.|++.++++ +
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 899999999887543221 00 01112467788999999999877655 5
Q ss_pred CCcEEEEEcCCCc-eeeeeccCCC-----CCcceeeEEeC-CCcEEEEeCCCCcEEEEEcCCCce------eee------
Q 026679 121 NNNIYVLDAYGGE-KRCGFSLEPS-----PNTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNE------VAC------ 181 (235)
Q Consensus 121 d~~i~~~d~~~~~-~~~~~~~~~~-----~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~------~~~------ 181 (235)
|=.|.+|++.--. ........++ ..-|++..|+| ..+.++..+..|+|++-|++...+ +..
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 7789999986432 2222222222 25578889999 467788888999999999984321 111
Q ss_pred ----ecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCC
Q 026679 182 ----WNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPS 216 (235)
Q Consensus 182 ----~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~ 216 (235)
+..--..|..+.|+++|+++++-+ -++++||++..
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme 303 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNME 303 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEecccc
Confidence 111134688999999999999999 89999999654
No 239
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.59 E-value=1.6e-14 Score=121.48 Aligned_cols=195 Identities=19% Similarity=0.268 Sum_probs=152.3
Q ss_pred cccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC---ceEEEcCCCCEEEEEecCCeEEEEeccCCC
Q 026679 11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR---PTVAFDQQGLVFAVAMEAGAIKLFDSRSYD 87 (235)
Q Consensus 11 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 87 (235)
+.|-..|.++.-+|...+.+||+.||.+++|....++.+..++..+. ..+.|+.+|+.+..+..||.+.+|.+..
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-- 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-- 2282 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--
Confidence 34556788888899889999999999999999988888877765443 2288999999999999999999999872
Q ss_pred CCCceeEeecCCCcceeEEEEccCCCeEEEec---CCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679 88 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT---TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 164 (235)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (235)
........|......+.|-. ..+++++ .++.+.+||.--.....-.. ..|.+.++++++-|..+.|++|+.
T Consensus 2283 ---k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2283 ---KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred ---cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCC
Confidence 23566677888888888875 4566654 47889999965432222222 556677999999999999999999
Q ss_pred CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC-CCCCCCC
Q 026679 165 DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS-SNSTDES 223 (235)
Q Consensus 165 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~-~~~~~~~ 223 (235)
+|.|++||++..+.+++++. +. ...++++++ |+++||++..- .+..++.
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 99999999999888888764 44 567888887 99999999754 3344443
No 240
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=3.5e-12 Score=98.12 Aligned_cols=195 Identities=14% Similarity=0.122 Sum_probs=127.4
Q ss_pred ceeEEEeecCCCe-eEEEec---cceEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEEEe-cC--CeEEEEeccCCC
Q 026679 16 RVISLCMSPVNDS-FMSGSL---DHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAM-EA--GAIKLFDSRSYD 87 (235)
Q Consensus 16 ~v~~~~~~~~~~~-l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~-~d--g~v~i~d~~~~~ 87 (235)
.+....|+|||+. ++..+. +..|.++|+.+++........... ...|+|||+.++... .+ ..|.++|+.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 6678999999984 554443 356899999888776665544433 378999998776543 33 467777876654
Q ss_pred CCCceeEeecCCCcceeEEEEccCCCeEEEecCC-C--cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679 88 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-N--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG 164 (235)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (235)
. ..+..+........|+|||+.|+..+.. + .|+++|+.+++..+... ... ....|+|+|++|+....
T Consensus 269 ~-----~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~----~~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 269 L-----TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK----NNSSVSTYKNYIVYSSR 338 (419)
T ss_pred E-----EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC----cCceECCCCCEEEEEEc
Confidence 2 1222222223456799999988877642 2 68888988777643322 221 12489999999876654
Q ss_pred C---------CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-----cceEEeeCCCCCCCCCC
Q 026679 165 D---------GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNSTDE 222 (235)
Q Consensus 165 d---------g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~iw~~~~~~~~~~~ 222 (235)
. ..|.+.|+.++... .+... .......|+|||+.|+... ..+.+.++++.....++
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence 3 36888898777643 33322 2334689999999887764 33777777776555444
No 241
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.58 E-value=6.1e-12 Score=94.99 Aligned_cols=198 Identities=17% Similarity=0.241 Sum_probs=129.4
Q ss_pred ceeEEEeecCCCeeEEEec-cceEEEEecCc-ceeeee---eec------------cCCceEEEcCCCCEEEEEec-CCe
Q 026679 16 RVISLCMSPVNDSFMSGSL-DHSVRIWDLRV-NACQGI---LRL------------RGRPTVAFDQQGLVFAVAME-AGA 77 (235)
Q Consensus 16 ~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~-~~~~~~---~~~------------~~~~~~~~~~~~~~l~~~~~-dg~ 77 (235)
.-..++++|++++|+++.. +|.|.++++.. +..... +.. .....+.++|+++++++... ...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~ 167 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADR 167 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTE
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCE
Confidence 4456889999999888864 89999999976 332222 211 01124899999998887653 458
Q ss_pred EEEEeccCCCCC--CceeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcC--CCceee--eeccC---C-CCCc
Q 026679 78 IKLFDSRSYDKG--PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAY--GGEKRC--GFSLE---P-SPNT 146 (235)
Q Consensus 78 v~i~d~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~--~~~~~~--~~~~~---~-~~~~ 146 (235)
|.+|++...... ..... ........+.+.|+|+++++++..+ ++.|.++++. ++.... ..... . ....
T Consensus 168 v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 168 VYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 999999775521 11111 2234456789999999998876654 7889999988 443222 11111 1 1124
Q ss_pred ceeeEEeCCCcEEEEeC-CCCcEEEEEcC--CCc--eeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCC
Q 026679 147 NTEATFTPDGQYVVSGS-GDGTLHAWNIN--TRN--EVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPN 214 (235)
Q Consensus 147 i~~~~~~~~~~~l~~~~-~dg~i~v~d~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~ 214 (235)
...++++|||++|+++. ..+.|.+|++. +++ .+..+.......+.++++|+|++|+++. +.|.+|+++
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 67899999999987765 46789999993 233 2333433344589999999999999986 679999875
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.58 E-value=2.6e-12 Score=99.82 Aligned_cols=174 Identities=18% Similarity=0.203 Sum_probs=115.7
Q ss_pred ceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecC---CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccC
Q 026679 36 HSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 111 (235)
Q Consensus 36 ~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 111 (235)
..|.++|.............. ....+|+|+|+.++.+..+ ..|++||+.++.. .....+...+..++|+||
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-----~~~~~~~~~~~~~~~spD 244 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-----EKVASFPGMNGAPAFSPD 244 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-----EEeecCCCCccceEECCC
Confidence 358888875444433333222 2337899999999887654 4799999987543 122233455667899999
Q ss_pred CCeEEEe-cCC--CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CC--cEEEEEcCCCceeeeecCC
Q 026679 112 GKSMLLT-TTN--NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNGN 185 (235)
Q Consensus 112 ~~~l~~~-~~d--~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~ 185 (235)
|+.|+.. +.+ ..|++||+.+++...... +........|+|+|+.|+..+. ++ .|+++|+.+++.. .+..+
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~---~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~ 320 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN---GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR 320 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCCEEECCC---CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC
Confidence 9977654 333 359999998776543322 2233456789999998876654 33 5888888766543 34334
Q ss_pred CcceeEEEeecCCCEEEEcc--c---ceEEeeCCCCCC
Q 026679 186 IGVVACLKWAPRRAMFVAAS--S---VLSFWIPNPSSN 218 (235)
Q Consensus 186 ~~~v~~~~~~~~~~~l~~~~--~---~i~iw~~~~~~~ 218 (235)
...+..+.|+|++++++.++ + .+.+|++.+...
T Consensus 321 ~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 321 GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 55677889999999998876 2 588888876543
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.8e-13 Score=103.67 Aligned_cols=170 Identities=15% Similarity=0.287 Sum_probs=135.2
Q ss_pred CchhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-------------CceEEEcCCCC
Q 026679 1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-------------RPTVAFDQQGL 67 (235)
Q Consensus 1 l~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 67 (235)
|+.|+.+..|.--.+.++++..++...+|++|+.+|.|..||.+.......+.... +..+.|+.+|-
T Consensus 162 LEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL 241 (703)
T KOG2321|consen 162 LEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL 241 (703)
T ss_pred ccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce
Confidence 57889999999888999999999998999999999999999998877666554321 33488998999
Q ss_pred EEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCc
Q 026679 68 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT 146 (235)
Q Consensus 68 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 146 (235)
.+++|..+|.+.+||+++.+. ....-.+..-+|..+.|.+. +..-+.......+++||-.+|+....+... ..
T Consensus 242 ~~aVGts~G~v~iyDLRa~~p---l~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt---~~ 315 (703)
T KOG2321|consen 242 HVAVGTSTGSVLIYDLRASKP---LLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT---SD 315 (703)
T ss_pred eEEeeccCCcEEEEEcccCCc---eeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecccc---CC
Confidence 999999999999999998764 22233344567889999774 233444556678999999999988766543 34
Q ss_pred ceeeEEeCCCcEEEEeCCCCcEEEEEcCCC
Q 026679 147 NTEATFTPDGQYVVSGSGDGTLHAWNINTR 176 (235)
Q Consensus 147 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 176 (235)
+..+++-|++-+++++.+++.+..|=+...
T Consensus 316 lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 316 LNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred cCceeeecCCceEEEecCCCcceeEEcccc
Confidence 888999999999999999988887776553
No 244
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.54 E-value=1.1e-12 Score=93.28 Aligned_cols=203 Identities=15% Similarity=0.251 Sum_probs=133.3
Q ss_pred hhcccccceeEEEeecCCCe-eEEEeccceEEEEecCcceeeeee-eccCCceEEEcCCCCEEEEEecC-----------
Q 026679 9 YFKGHKERVISLCMSPVNDS-FMSGSLDHSVRIWDLRVNACQGIL-RLRGRPTVAFDQQGLVFAVAMEA----------- 75 (235)
Q Consensus 9 ~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d----------- 75 (235)
.++.-..++.+++|||+|+. |.+...|-.|.||.+.+.+....- ..+....++|+|+|++.+.++.-
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC 165 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence 34455678999999999954 667778999999999876654332 22334458888888887766532
Q ss_pred -------------------------CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcC
Q 026679 76 -------------------------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 130 (235)
Q Consensus 76 -------------------------g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 130 (235)
..+.+||.--.-. .. ...-.-.+..++|+|-+++|++|+.|+.+++.+--
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk----v~-aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK----VY-AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe----ee-eeeeccceeEEEeccccceEEeeccchhhhhhcee
Confidence 1233333211100 00 11112457889999999999999999998886642
Q ss_pred CCceee------------------------------------------------------------eec----cCCCCCc
Q 026679 131 GGEKRC------------------------------------------------------------GFS----LEPSPNT 146 (235)
Q Consensus 131 ~~~~~~------------------------------------------------------------~~~----~~~~~~~ 146 (235)
+.+... ..+ .......
T Consensus 241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g 320 (447)
T KOG4497|consen 241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG 320 (447)
T ss_pred eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence 211100 000 0011234
Q ss_pred ceeeEEeCCCcEEEEeCC--CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679 147 NTEATFTPDGQYVVSGSG--DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 147 i~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~ 217 (235)
+..++|++|..++++-.+ -+.+.+||++..+....+. ...+|....|+|....|+.+. ..+++|.+....
T Consensus 321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence 566899999999988755 3569999998877655554 567899999999887777665 458888876643
No 245
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.54 E-value=1.8e-11 Score=90.94 Aligned_cols=195 Identities=12% Similarity=0.120 Sum_probs=131.7
Q ss_pred eecCCCeeEEEec----------cceEEEEecCcceeeeeeeccCC---------ceEEEcCCCCEEEEEe-c-CCeEEE
Q 026679 22 MSPVNDSFMSGSL----------DHSVRIWDLRVNACQGILRLRGR---------PTVAFDQQGLVFAVAM-E-AGAIKL 80 (235)
Q Consensus 22 ~~~~~~~l~s~~~----------d~~i~vwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~-~-dg~v~i 80 (235)
++||++.|+.+.. +..|.+||..+.+.+..+..... ..++++|+|+++++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999988776654 78999999999999988875432 2489999999999876 3 688999
Q ss_pred EeccCCCCCC-------ceeEee----------cCC----------CcceeEE--------------EEcc-CCCeEEEe
Q 026679 81 FDSRSYDKGP-------FDTFLV----------GGD----------TAEVCDI--------------KFSN-DGKSMLLT 118 (235)
Q Consensus 81 ~d~~~~~~~~-------~~~~~~----------~~~----------~~~v~~~--------------~~~~-~~~~l~~~ 118 (235)
.|+.+.+... ...+.. .+. ....... .|.+ +|+++++.
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 9987644210 000000 000 0001111 2234 77766666
Q ss_pred cCCCcEEEEEcCCCc-----eeeeeccC-----CCCCcceeeEEeCCCcEEEEeC----------CCCcEEEEEcCCCce
Q 026679 119 TTNNNIYVLDAYGGE-----KRCGFSLE-----PSPNTNTEATFTPDGQYVVSGS----------GDGTLHAWNINTRNE 178 (235)
Q Consensus 119 ~~d~~i~~~d~~~~~-----~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~v~d~~~~~~ 178 (235)
.. |.|.+.|+.... ....+... -.++.+.-++++|+++.+++.. ..+.|.++|..+++.
T Consensus 213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv 291 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR 291 (352)
T ss_pred cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence 65 999999965432 22222111 1233445599999999888742 124799999999999
Q ss_pred eeeecCCCcceeEEEeecCCC-EEEEcc---cceEEeeCCCCCC
Q 026679 179 VACWNGNIGVVACLKWAPRRA-MFVAAS---SVLSFWIPNPSSN 218 (235)
Q Consensus 179 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~---~~i~iw~~~~~~~ 218 (235)
+..+.. ...+..++++||++ +|++.. +++.++|..+.+.
T Consensus 292 i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 292 LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 988873 45889999999999 777665 7799999977643
No 246
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.54 E-value=7.6e-13 Score=94.43 Aligned_cols=217 Identities=17% Similarity=0.174 Sum_probs=158.8
Q ss_pred hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecC-cceeee---eeeccCCceEEEcCCCCEEEEEecCCeEE
Q 026679 4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR-VNACQG---ILRLRGRPTVAFDQQGLVFAVAMEAGAIK 79 (235)
Q Consensus 4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~v~ 79 (235)
..+++.++||.+.|+....-|...-+++.+.|.+++||--+ .++.-. ........++.+.++...|++|-..|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 35778899999999999888888889999999999999543 333322 22333445588999999999999999999
Q ss_pred EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC----------------------------
Q 026679 80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG---------------------------- 131 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---------------------------- 131 (235)
-+.+...-...........|...+..+-|+...+.+++.+.|..+..--.+.
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~ 173 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH 173 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence 8877654333333444556777777777777667777766665432221111
Q ss_pred -----------CceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCce-eeeecCCCcceeEEEeecCCC
Q 026679 132 -----------GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAPRRA 199 (235)
Q Consensus 132 -----------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~ 199 (235)
..+.......+|.+.+.+++|.|....|.+|..|..+.+||+.-.+- ...+.+|...|..+...+.-+
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~ 253 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR 253 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe
Confidence 11112233456678899999999999999999999999999964433 456788999999999888888
Q ss_pred EEEEcc--cceEEeeCCCCCCCC
Q 026679 200 MFVAAS--SVLSFWIPNPSSNST 220 (235)
Q Consensus 200 ~l~~~~--~~i~iw~~~~~~~~~ 220 (235)
.+.+++ +.|.+|+++.....+
T Consensus 254 ~l~S~~edg~i~~w~mn~~r~et 276 (404)
T KOG1409|consen 254 QLISCGEDGGIVVWNMNVKRVET 276 (404)
T ss_pred eeeeccCCCeEEEEeccceeecC
Confidence 888887 779999998765443
No 247
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=5.7e-11 Score=85.64 Aligned_cols=202 Identities=16% Similarity=0.244 Sum_probs=137.7
Q ss_pred ccccceeEEEeecCCCeeEEEecc---ceEEEEecCc--ceeee--eeeccC-Cce-EEEcCCCCEEEEEec-CCeEEEE
Q 026679 12 GHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLRV--NACQG--ILRLRG-RPT-VAFDQQGLVFAVAME-AGAIKLF 81 (235)
Q Consensus 12 ~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~--~~~~~--~~~~~~-~~~-~~~~~~~~~l~~~~~-dg~v~i~ 81 (235)
.+.+..+-|+|+|++++|+++..+ |.|..|.++. |+... ...... .++ +++++++++++++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 456778899999999999888654 6777777764 43322 222222 224 999999999888875 6899999
Q ss_pred eccCCCCCCceeEeecCCCcc----------eeEEEEccCCCeEEEecC-CCcEEEEEcCCCceeeee--ccCCCCCcce
Q 026679 82 DSRSYDKGPFDTFLVGGDTAE----------VCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGF--SLEPSPNTNT 148 (235)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~--~~~~~~~~i~ 148 (235)
-++...... .......|... +....+.|++++|++.+- -..|.+|++..++..... ..... ...+
T Consensus 117 p~~~dG~l~-~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G-~GPR 194 (346)
T COG2706 117 PLQADGSLQ-PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG-AGPR 194 (346)
T ss_pred EcccCCccc-cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC-CCcc
Confidence 987632111 11122223333 778889999999888764 456999999977654322 22222 3458
Q ss_pred eeEEeCCCcEEEEeCC-CCcEEEEEcCCC-ceeeeecCC---------CcceeEEEeecCCCEEEEcc---cceEEeeCC
Q 026679 149 EATFTPDGQYVVSGSG-DGTLHAWNINTR-NEVACWNGN---------IGVVACLKWAPRRAMFVAAS---SVLSFWIPN 214 (235)
Q Consensus 149 ~~~~~~~~~~l~~~~~-dg~i~v~d~~~~-~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~ 214 (235)
.+.|+|++++..+.++ +++|.+|..... ..+..++.+ ......|..+|||++|.++. ..|.++.++
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 8999999999876665 889999998763 222333211 23567889999999999997 557777765
Q ss_pred C
Q 026679 215 P 215 (235)
Q Consensus 215 ~ 215 (235)
.
T Consensus 275 ~ 275 (346)
T COG2706 275 P 275 (346)
T ss_pred C
Confidence 3
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.52 E-value=5.1e-11 Score=90.04 Aligned_cols=199 Identities=16% Similarity=0.207 Sum_probs=130.7
Q ss_pred ceeEEEeecCCCeeEEEec----cceEEEEecCcc--e--eeeeee-ccCCce-EEEcCCCCEEEEEec-CCeEEEEecc
Q 026679 16 RVISLCMSPVNDSFMSGSL----DHSVRIWDLRVN--A--CQGILR-LRGRPT-VAFDQQGLVFAVAME-AGAIKLFDSR 84 (235)
Q Consensus 16 ~v~~~~~~~~~~~l~s~~~----d~~i~vwd~~~~--~--~~~~~~-~~~~~~-~~~~~~~~~l~~~~~-dg~v~i~d~~ 84 (235)
....++++|++++|++... ++.|..|++... + .+.... ....++ ++++|++++|+++.. +|.+.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 3456888999999988876 568999988764 3 333333 233445 999999999988874 8999999998
Q ss_pred CCCCCCceeEee----------cCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcCCCc--ee--eeeccCCCCCccee
Q 026679 85 SYDKGPFDTFLV----------GGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGE--KR--CGFSLEPSPNTNTE 149 (235)
Q Consensus 85 ~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~--~~--~~~~~~~~~~~i~~ 149 (235)
............ ........++.++|+++++++... ...|.+|++.... .. ..+..... ...+.
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G-~GPRh 196 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG-SGPRH 196 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT-SSEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC-CCCcE
Confidence 742211111111 112345678999999998887654 4579999997655 32 22333333 34688
Q ss_pred eEEeCCCcEEEEe-CCCCcEEEEEcC--CCce--eeeecC----C--CcceeEEEeecCCCEEEEcc---cceEEeeCCC
Q 026679 150 ATFTPDGQYVVSG-SGDGTLHAWNIN--TRNE--VACWNG----N--IGVVACLKWAPRRAMFVAAS---SVLSFWIPNP 215 (235)
Q Consensus 150 ~~~~~~~~~l~~~-~~dg~i~v~d~~--~~~~--~~~~~~----~--~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~ 215 (235)
+.|+|+++++++. -.++.|.++++. ++.. +..+.. . ......|.++|||++|.++. +.|.+|+++.
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 9999999988655 457889999988 3322 222211 1 12578899999999999886 6699999853
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.5e-11 Score=95.89 Aligned_cols=175 Identities=14% Similarity=0.071 Sum_probs=112.3
Q ss_pred eEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecC---CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCC
Q 026679 37 SVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 112 (235)
Q Consensus 37 ~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 112 (235)
.|.++|.+.+.......... .....|+|+|+.|+..+.+ ..|.+||+.+++. ..+...........|+|||
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-----~~l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-----EQITNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-----EEccCCCCCcCCeEECCCC
Confidence 47778876554433333322 2337999999998876643 3688899987653 1222223345568999999
Q ss_pred CeEEEe-cCCC--cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CC--cEEEEEcCCCceeeeecCCC
Q 026679 113 KSMLLT-TTNN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNGNI 186 (235)
Q Consensus 113 ~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~ 186 (235)
+.|+.. ..++ .|+++|+.+++.... . .+........|+|||+.|+..+. +| .|+++|+.+++... +....
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~l-t--~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~ 330 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSRV-T--NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVG 330 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEEc-c--cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCC
Confidence 988754 3444 688899988765432 2 22234566899999998876553 33 57788887776432 22122
Q ss_pred cceeEEEeecCCCEEEEcc---c--ceEEeeCCCCCCCC
Q 026679 187 GVVACLKWAPRRAMFVAAS---S--VLSFWIPNPSSNST 220 (235)
Q Consensus 187 ~~v~~~~~~~~~~~l~~~~---~--~i~iw~~~~~~~~~ 220 (235)
.......|+|+|++|+..+ + .+.+||+.++....
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~ 369 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI 369 (430)
T ss_pred CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE
Confidence 2344678999999998775 2 37788887765443
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.2e-11 Score=95.75 Aligned_cols=179 Identities=16% Similarity=0.178 Sum_probs=111.4
Q ss_pred cceeEEEeecCCCeeEEEec-----cceEEEEecCcc---eeeeeeecc-C-CceEEEcCCCCEEEEEe-cCCeEEEEec
Q 026679 15 ERVISLCMSPVNDSFMSGSL-----DHSVRIWDLRVN---ACQGILRLR-G-RPTVAFDQQGLVFAVAM-EAGAIKLFDS 83 (235)
Q Consensus 15 ~~v~~~~~~~~~~~l~s~~~-----d~~i~vwd~~~~---~~~~~~~~~-~-~~~~~~~~~~~~l~~~~-~dg~v~i~d~ 83 (235)
+.....+|+|||+.|+..+. |..+..|++..+ ......... . ....+|+|||+.|+..+ .+|...+|.+
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 34456799999988776542 333445776643 333333322 1 23489999999877665 4665566644
Q ss_pred cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC---CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679 84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 160 (235)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (235)
....... ....+......+....|+|||+.|+..+.+ ..|.+||+.+++....... ...+....|+|||++|+
T Consensus 311 ~~~~~g~-~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~---~~~~~~p~wSpDG~~L~ 386 (428)
T PRK01029 311 QIDPEGQ-SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS---PENKESPSWAIDSLHLV 386 (428)
T ss_pred ECccccc-ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC---CCCccceEECCCCCEEE
Confidence 3211000 112222333456788999999998876543 4699999988876543221 23456789999999887
Q ss_pred EeCC---CCcEEEEEcCCCceeeeecCCCcceeEEEeecCC
Q 026679 161 SGSG---DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR 198 (235)
Q Consensus 161 ~~~~---dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 198 (235)
.... ...|+++|+.+++...... ..+.+...+|+|..
T Consensus 387 f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 387 YSAGNSNESELYLISLITKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred EEECCCCCceEEEEECCCCCEEEeec-CCCcccCceecCCC
Confidence 5432 3568899997776544333 44566778888753
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=3.1e-11 Score=94.12 Aligned_cols=174 Identities=17% Similarity=0.095 Sum_probs=108.2
Q ss_pred eEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecC-C--eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCC
Q 026679 37 SVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEA-G--AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 112 (235)
Q Consensus 37 ~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d-g--~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 112 (235)
.+.++|.............. .....|+|||+.|+..+.+ + .|.++|+.+++. ..+..........+|+|||
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-----~~lt~~~g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-----EKVTSFPGINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-----EEecCCCCCcCCeeECCCC
Confidence 57777865544333333222 2348999999988876543 3 588888877543 1111222334468999999
Q ss_pred CeEEEe-cCCCc--EEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CC--cEEEEEcCCCceeeeecCCC
Q 026679 113 KSMLLT-TTNNN--IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNGNI 186 (235)
Q Consensus 113 ~~l~~~-~~d~~--i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~ 186 (235)
+.|+.. +.++. |+++|+.+++..... .+........|+|||++|+..+. ++ .|+++|+.+++... +....
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~lt---~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g 349 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTRIT---RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEG 349 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEECc---cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCC
Confidence 988764 44554 888898877654322 22234567899999998876553 33 47777887776433 22122
Q ss_pred cceeEEEeecCCCEEEEcc---c--ceEEeeCCCCCCC
Q 026679 187 GVVACLKWAPRRAMFVAAS---S--VLSFWIPNPSSNS 219 (235)
Q Consensus 187 ~~v~~~~~~~~~~~l~~~~---~--~i~iw~~~~~~~~ 219 (235)
......+|+|||++|+..+ + .+.+++++++...
T Consensus 350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ 387 (448)
T ss_pred CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE
Confidence 2334578999999988765 3 3555676665443
No 252
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.48 E-value=5e-12 Score=103.51 Aligned_cols=176 Identities=14% Similarity=0.212 Sum_probs=122.8
Q ss_pred EecCcceeeeeeeccCCce--EEEcC-CCCEEEEEecCCeEEEEeccCCCCCC-c--eeEeecCCCcceeEEEEccCCCe
Q 026679 41 WDLRVNACQGILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGP-F--DTFLVGGDTAEVCDIKFSNDGKS 114 (235)
Q Consensus 41 wd~~~~~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~-~--~~~~~~~~~~~v~~~~~~~~~~~ 114 (235)
|+. .|..+..+..|...+ ++.++ ++.+|++|+.||+|++|+.+...... . ...........+.++...+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 554 455666666665444 55544 66999999999999999998755431 1 12233335678899999999999
Q ss_pred EEEecCCCcEEEEEcCCCc-------eeeeeccCCCCCcceee-EEeC-CCc-EEEEeCCCCcEEEEEcCCCceeeeec-
Q 026679 115 MLLTTTNNNIYVLDAYGGE-------KRCGFSLEPSPNTNTEA-TFTP-DGQ-YVVSGSGDGTLHAWNINTRNEVACWN- 183 (235)
Q Consensus 115 l~~~~~d~~i~~~d~~~~~-------~~~~~~~~~~~~~i~~~-~~~~-~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~- 183 (235)
+|+++.||.|.+.++.... .......+.. +.+.+| +|.. .+. .|+.+...+.|..||++.......++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~-g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKD-GVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCC-CceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 9999999999999986521 1111122222 333333 3332 233 77888888999999998877655544
Q ss_pred -CCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679 184 -GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 184 -~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~ 218 (235)
...+.|++++.+|.+.+++.|. |.+.+||++-...
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~ 1229 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP 1229 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecCce
Confidence 2347899999999999999997 8899999986543
No 253
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=5.2e-11 Score=90.20 Aligned_cols=195 Identities=15% Similarity=0.274 Sum_probs=132.5
Q ss_pred cccceeEEEeecCC--CeeEE-----EeccceEEEEecCcceeee-----eeeccCCceEEEcCCCCE-EEEEe--cC--
Q 026679 13 HKERVISLCMSPVN--DSFMS-----GSLDHSVRIWDLRVNACQG-----ILRLRGRPTVAFDQQGLV-FAVAM--EA-- 75 (235)
Q Consensus 13 h~~~v~~~~~~~~~--~~l~s-----~~~d~~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~-l~~~~--~d-- 75 (235)
|...|+.+.+||.+ ..+|+ .+.-+.|+||......... .+-......+.|++-|.- |+..+ -|
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 66788999999864 33443 3556689999876332221 122222233788886653 33222 22
Q ss_pred -------CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEE--ecCCCcEEEEEcCCCceeeeeccCCCCCc
Q 026679 76 -------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL--TTTNNNIYVLDAYGGEKRCGFSLEPSPNT 146 (235)
Q Consensus 76 -------g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 146 (235)
.++++.++..... ... ....++|.++.|+|+++.+++ |-.-..+.+||++. ..+.. +.. ++
T Consensus 244 n~SYYGEq~Lyll~t~g~s~----~V~-L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~d--f~e--gp 313 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESV----SVP-LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFD--FPE--GP 313 (566)
T ss_pred CccccccceEEEEEecCceE----EEe-cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEe--CCC--CC
Confidence 3677777763221 222 234689999999999987765 44577899999864 44433 222 44
Q ss_pred ceeeEEeCCCcEEEEeCC---CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--------cceEEeeCCC
Q 026679 147 NTEATFTPDGQYVVSGSG---DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--------SVLSFWIPNP 215 (235)
Q Consensus 147 i~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~~i~iw~~~~ 215 (235)
-+++-|+|.|++|+.++- .|.|-|||+.+.+++..+..... +-..|+|||++++++. +.++||++.+
T Consensus 314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred ccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 677999999999987654 58899999999988888875543 5579999999999986 5599999988
Q ss_pred CCCC
Q 026679 216 SSNS 219 (235)
Q Consensus 216 ~~~~ 219 (235)
..+.
T Consensus 392 ~~l~ 395 (566)
T KOG2315|consen 392 SLLH 395 (566)
T ss_pred ceee
Confidence 6543
No 254
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=5.7e-13 Score=95.19 Aligned_cols=167 Identities=10% Similarity=0.071 Sum_probs=126.0
Q ss_pred EEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEc
Q 026679 30 MSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS 109 (235)
Q Consensus 30 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 109 (235)
++.+.+..|-+-|++++..........+-...|...++++..|+.+|.|..+|++.............-|.+.|+++..-
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L 307 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL 307 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh
Confidence 45556677888888877554444333344477888899999999999999999998755444444555688999999877
Q ss_pred c-CCCeEEEecCCCcEEEEEcCCCce---eeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC
Q 026679 110 N-DGKSMLLTTTNNNIYVLDAYGGEK---RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN 185 (235)
Q Consensus 110 ~-~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 185 (235)
. ++.+|.+.+.+|.|++||++.-+. +..+..|.....-.-+...+....+++++.|...++|.++.+..+.+++-.
T Consensus 308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 6 788899999999999999997666 666776655544445666778888999999999999999999998887633
Q ss_pred C----cceeEEEeec
Q 026679 186 I----GVVACLKWAP 196 (235)
Q Consensus 186 ~----~~v~~~~~~~ 196 (235)
. ..+.+++|..
T Consensus 388 ~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 388 YSASEVDIPSVAFDS 402 (425)
T ss_pred Cccccccccceehhc
Confidence 2 2455666643
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.45 E-value=6.7e-12 Score=95.32 Aligned_cols=158 Identities=13% Similarity=0.116 Sum_probs=126.9
Q ss_pred CCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEc------c--------------CCCeEEEecCCCc
Q 026679 64 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS------N--------------DGKSMLLTTTNNN 123 (235)
Q Consensus 64 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~------~--------------~~~~l~~~~~d~~ 123 (235)
|...++|....||.+++||....+...... ....-.+...+..|. | +-..++-|...|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~-p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFA-PIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeec-cchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 456789999999999999998765411110 011111223333331 1 2236777888999
Q ss_pred EEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEE
Q 026679 124 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA 203 (235)
Q Consensus 124 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 203 (235)
|.+|++..++....+....|.+.+.++.++.+-..|.+++.|+.+..|+....+.+..++.....+.+++.+||+..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 99999999999999998899999999999999999999999999999999999999999988889999999999999999
Q ss_pred cccceEEeeCCCCCCCCCC
Q 026679 204 ASSVLSFWIPNPSSNSTDE 222 (235)
Q Consensus 204 ~~~~i~iw~~~~~~~~~~~ 222 (235)
+++.|++|++++.+.....
T Consensus 162 as~~ik~~~~~~kevv~~f 180 (541)
T KOG4547|consen 162 ASRQIKVLDIETKEVVITF 180 (541)
T ss_pred ccceEEEEEccCceEEEEe
Confidence 9999999999987765443
No 256
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.44 E-value=9.7e-12 Score=87.11 Aligned_cols=191 Identities=12% Similarity=0.114 Sum_probs=134.5
Q ss_pred eeEEEeecCCCeeEEEeccceEEEEecCcceeee--eeeccCCce--EEEcC-CCCEEEEEecCCeEEEEeccCCCCCCc
Q 026679 17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG--ILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPF 91 (235)
Q Consensus 17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~ 91 (235)
-.++.|++.+..++++-.+|.+.+-+........ ..+.|...+ ..|+. +.+++.+|+.|+.+..||++.+.. .
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~--~ 201 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT--F 201 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc--e
Confidence 3567888888889999999999866655554443 677777665 56654 557899999999999999994432 1
Q ss_pred eeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCC-CceeeeeccCCCCCcceeeEEeCC--CcEEEEeCCCCc
Q 026679 92 DTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEATFTPD--GQYVVSGSGDGT 167 (235)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~ 167 (235)
.-.....|...|.++.-+| .+.++++|+.|-.|++||.|+ ++++..-... +.|..+..+|. ++.|+++-.+|
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~---GGVWRi~~~p~~~~~lL~~CMh~G- 277 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG---GGVWRIKHHPEIFHRLLAACMHNG- 277 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc---cceEEEEecchhhhHHHHHHHhcC-
Confidence 1222456788899998876 678999999999999999994 5555433322 66899999994 34555555555
Q ss_pred EEEEEcCCCc-----eeeeecCCCcceeEEEeecCCCEEEEcc---cceE-EeeC
Q 026679 168 LHAWNINTRN-----EVACWNGNIGVVACLKWAPRRAMFVAAS---SVLS-FWIP 213 (235)
Q Consensus 168 i~v~d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~-iw~~ 213 (235)
.+|-+...+. .....+.|.+-.+.-.|.....++++++ +.++ +|-.
T Consensus 278 ~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 278 AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeee
Confidence 5677765432 2334466777777778866667788877 3333 6654
No 257
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=5e-13 Score=101.41 Aligned_cols=201 Identities=18% Similarity=0.311 Sum_probs=137.8
Q ss_pred hhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCc-------ceeeeeeeccCCce--EEEcCCCCEEEEEecCCe
Q 026679 7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV-------NACQGILRLRGRPT--VAFDQQGLVFAVAMEAGA 77 (235)
Q Consensus 7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-------~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~ 77 (235)
+..+.||+..|..++--.+.+-+++++.|++|++|.++. ..+..+++.|..++ +.|-.+.+.++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 456789999999998877788899999999999999863 23666677776555 7777777776654 789
Q ss_pred EEEEeccCCCCCCceeEeecCCCcceeEEEEcc--CCCeEEEe-cCCCcEEEEEcCCCceeeeeccC---CCCCcceeeE
Q 026679 78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLE---PSPNTNTEAT 151 (235)
Q Consensus 78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~---~~~~~i~~~~ 151 (235)
+.+||.--+..... .......+.+..+..-| +...++++ +...+|+++|.+..+....++.. .....+++++
T Consensus 806 iHlWDPFigr~Laq--~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQ--MEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred ceeecccccchhHh--hhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 99999765443111 11111122333333333 34444454 56889999999998877766543 2235588999
Q ss_pred EeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEE-ee
Q 026679 152 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSF-WI 212 (235)
Q Consensus 152 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~i-w~ 212 (235)
..|.|++++++-.+|.|.+.|.++|+.+..+.........++ .|..+.++... .++.+ |.
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeeh
Confidence 999999999999999999999999998887765544444443 23334444333 33444 54
No 258
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.43 E-value=2.7e-11 Score=86.75 Aligned_cols=201 Identities=13% Similarity=0.241 Sum_probs=135.3
Q ss_pred cceeEEEeecCC--CeeEEEeccceEEEEecCcceeee--------------------eee----------------ccC
Q 026679 15 ERVISLCMSPVN--DSFMSGSLDHSVRIWDLRVNACQG--------------------ILR----------------LRG 56 (235)
Q Consensus 15 ~~v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~~~~~--------------------~~~----------------~~~ 56 (235)
.+|..+.|.+++ ..++....|.+|++|.+....... .+. .|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 578889999876 457778899999999875321111 010 011
Q ss_pred --CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCC-----CcceeEEEEcc-CCCeEEEecCCCcEEEEE
Q 026679 57 --RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-----TAEVCDIKFSN-DGKSMLLTTTNNNIYVLD 128 (235)
Q Consensus 57 --~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d 128 (235)
.+++.++.|.+.++++ .|-.|.+|+++-... .........+ ..-|++..|+| ..+.++..+..|+|++-|
T Consensus 165 yhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~-sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSA-DDLRINLWNLEIIDQ-SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eEeeeeeecCccceEeec-cceeeeeccccccCC-ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 2236777788877776 456899999875442 2222223332 35688899999 467788889999999999
Q ss_pred cCCCcee----eeeccCCC----------CCcceeeEEeCCCcEEEEeCCCCcEEEEEc-CCCceeeeecCCCc------
Q 026679 129 AYGGEKR----CGFSLEPS----------PNTNTEATFTPDGQYVVSGSGDGTLHAWNI-NTRNEVACWNGNIG------ 187 (235)
Q Consensus 129 ~~~~~~~----~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~~------ 187 (235)
+|..... +.+..... -..|..+.|+++|+|+++-..- +|++||+ ...+++.+++.|..
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc 321 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLC 321 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHH
Confidence 9843211 11111111 1567889999999999987644 7999999 46677777766621
Q ss_pred ------c---eeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679 188 ------V---VACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 188 ------~---v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~ 218 (235)
. =..++|+.++.++++|+ +.+++++...+..
T Consensus 322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 322 SLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred HHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 1 24578999999999999 6699999655443
No 259
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=2.2e-12 Score=97.50 Aligned_cols=122 Identities=19% Similarity=0.335 Sum_probs=103.4
Q ss_pred EeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC--CCcEEEEeCCCCcEEEE
Q 026679 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP--DGQYVVSGSGDGTLHAW 171 (235)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~v~ 171 (235)
..+.+|.+-|.++.|+.+|.+|++|++|-.+.+||.-..+.+..+. .+|...|.++.|-| +.+.+++|..|..|+++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-cccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 4567899999999999999999999999999999998887777665 46778899999999 56788999999999999
Q ss_pred EcCC----------CceeeeecCCCcceeEEEeecCC-CEEEEcc--cceEEeeCCCC
Q 026679 172 NINT----------RNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 172 d~~~----------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~~i~iw~~~~~ 216 (235)
|+.. .+....+..|...|..|+-.|++ ..+.+++ |+++-||+...
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 9974 23445567788999999999998 5666666 89999999764
No 260
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.41 E-value=1.1e-11 Score=90.07 Aligned_cols=162 Identities=20% Similarity=0.227 Sum_probs=114.3
Q ss_pred eeEEEeecCCCeeEEEeccceEEEEecCccee----eeeeeccCCc-eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCc
Q 026679 17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC----QGILRLRGRP-TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF 91 (235)
Q Consensus 17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~----~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 91 (235)
...+..++.++++|.+..+....++++..... .......... .+.+..+......+..-|.++-+|+-.... .
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~ 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--G 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc--c
Confidence 34456677888999888888877777654432 2233333322 266666666666665555555555443221 1
Q ss_pred eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEE
Q 026679 92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW 171 (235)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~ 171 (235)
.....-+|-+.++.++|+||+++++++..|..|++-....-..+..+-+ +|...|..++.-++ ..|++++.|+++++|
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl-GH~eFVS~isl~~~-~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL-GHKEFVSTISLTDN-YLLLSGSGDKTLRLW 220 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc-ccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence 1334558889999999999999999999999999988776666655543 46677888988765 458999999999999
Q ss_pred EcCCCceeeee
Q 026679 172 NINTRNEVACW 182 (235)
Q Consensus 172 d~~~~~~~~~~ 182 (235)
|+.+|+.+.++
T Consensus 221 d~~sgk~L~t~ 231 (390)
T KOG3914|consen 221 DITSGKLLDTC 231 (390)
T ss_pred ecccCCccccc
Confidence 99999887664
No 261
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.40 E-value=7.6e-11 Score=82.73 Aligned_cols=199 Identities=11% Similarity=0.043 Sum_probs=134.7
Q ss_pred cceeEEEeec---CCC-eeEEEeccceEEEEecCcceeeeeeeccC--------CceEEEcCCCCEEEEEecCCeEEEEe
Q 026679 15 ERVISLCMSP---VND-SFMSGSLDHSVRIWDLRVNACQGILRLRG--------RPTVAFDQQGLVFAVAMEAGAIKLFD 82 (235)
Q Consensus 15 ~~v~~~~~~~---~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~dg~v~i~d 82 (235)
..+..+.|.- +|. .++-+..+|.|.++..........+..-. ..++.|++.+..++++..+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 4566666653 344 45666778888888765443333332211 12378889999999999999998555
Q ss_pred ccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCc-eeeeeccCCCCCcceeeEEeC-CCcEE
Q 026679 83 SRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTP-DGQYV 159 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l 159 (235)
...... ......+.|.....-..|+. +.+.+.+|++|+.+..||+|..+ .+. .....|...|.++.-+| .+.++
T Consensus 150 ~t~~~l--e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~-~n~kvH~~GV~SI~ss~~~~~~I 226 (339)
T KOG0280|consen 150 ETEMVL--EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW-HNSKVHTSGVVSIYSSPPKPTYI 226 (339)
T ss_pred cceeee--eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee-ecceeeecceEEEecCCCCCceE
Confidence 443322 11235677888888888876 45788999999999999999433 222 12344556688887776 67899
Q ss_pred EEeCCCCcEEEEEcCC-CceeeeecCCCcceeEEEeecCCC--EEEEcc-cceEEeeCCCCC
Q 026679 160 VSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRA--MFVAAS-SVLSFWIPNPSS 217 (235)
Q Consensus 160 ~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~-~~i~iw~~~~~~ 217 (235)
++|+.|-.|++||.++ ++++..-+ -.+.|+.+.++|.-. .|+++- +..+|-+.+...
T Consensus 227 ~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 227 ATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred EEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccc
Confidence 9999999999999994 66665544 347899999999533 333332 556776665443
No 262
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.4e-10 Score=88.09 Aligned_cols=202 Identities=15% Similarity=0.247 Sum_probs=128.0
Q ss_pred cceeEEEeecCCCeeEEEecc-----------ceEEEEecCcceeeeeeeccC-----CceEEEcCCCCEEEEEecCCeE
Q 026679 15 ERVISLCMSPVNDSFMSGSLD-----------HSVRIWDLRVNACQGILRLRG-----RPTVAFDQQGLVFAVAMEAGAI 78 (235)
Q Consensus 15 ~~v~~~~~~~~~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~dg~v 78 (235)
..|.-+.|||+.++|+|-+.. ..++|||+.+|...+.+.... -+...||.|++++|.-..+ .|
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-si 328 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SI 328 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eE
Confidence 358889999999999987641 579999999998888877632 1237788888877766553 45
Q ss_pred EEEeccCCC-----------------------------------------------------------------------
Q 026679 79 KLFDSRSYD----------------------------------------------------------------------- 87 (235)
Q Consensus 79 ~i~d~~~~~----------------------------------------------------------------------- 87 (235)
.||+.....
T Consensus 329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 555433200
Q ss_pred ---------C---CC---ceeEeec---------CCCcceeEEEEccCCCeEEEecC---CCcEEEEEcCCCceeeeecc
Q 026679 88 ---------K---GP---FDTFLVG---------GDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSL 140 (235)
Q Consensus 88 ---------~---~~---~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~ 140 (235)
. .. ...+.+. .-...|..++|-|.|+.+++-+. ..++.+|-+.+......+..
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 0 00 0000000 11245667888888888776554 45688887763211111111
Q ss_pred CCCCCcceeeEEeCCCcEEEEe---CCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--------cceE
Q 026679 141 EPSPNTNTEATFTPDGQYVVSG---SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--------SVLS 209 (235)
Q Consensus 141 ~~~~~~i~~~~~~~~~~~l~~~---~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~~i~ 209 (235)
.-.....+.+.|+|.|++++.+ +..|.+.++|.........-.......+.+.|.|.|+|+++++ ..-+
T Consensus 489 ~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYr 568 (698)
T KOG2314|consen 489 ELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYR 568 (698)
T ss_pred hhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceE
Confidence 1112346789999999998765 4578899999874232222111224568899999999999987 2378
Q ss_pred EeeCCCCC
Q 026679 210 FWIPNPSS 217 (235)
Q Consensus 210 iw~~~~~~ 217 (235)
+|++.+..
T Consensus 569 i~tfqGrl 576 (698)
T KOG2314|consen 569 IFTFQGRL 576 (698)
T ss_pred EEEeecHH
Confidence 88887754
No 263
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.39 E-value=9.6e-10 Score=93.61 Aligned_cols=202 Identities=17% Similarity=0.162 Sum_probs=129.9
Q ss_pred ceeEEEeecCCCeeEEEe-ccceEEEEecCcceeeeeeecc------------------CCc-eEEEcC-CCCEEEEEec
Q 026679 16 RVISLCMSPVNDSFMSGS-LDHSVRIWDLRVNACQGILRLR------------------GRP-TVAFDQ-QGLVFAVAME 74 (235)
Q Consensus 16 ~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~------------------~~~-~~~~~~-~~~~l~~~~~ 74 (235)
.-..+++.++++.|+.+. ..+.|+++|..++.. .++... ..+ .++++| ++.++++...
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 357889998887665554 456799999876543 222110 112 389999 5666677777
Q ss_pred CCeEEEEeccCCCCCCc----eeEeec------CCCcceeEEEEccCCCeEE-EecCCCcEEEEEcCCCceeeeec----
Q 026679 75 AGAIKLFDSRSYDKGPF----DTFLVG------GDTAEVCDIKFSNDGKSML-LTTTNNNIYVLDAYGGEKRCGFS---- 139 (235)
Q Consensus 75 dg~v~i~d~~~~~~~~~----~~~~~~------~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~---- 139 (235)
++.|++||..++..... ...... ..-.....++++|+++.|+ +-..++.|++||+.++.......
T Consensus 704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 89999999866432000 000000 0112456799999998554 45567899999998765321110
Q ss_pred -------cCC--------CCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec-------------CCCcceeE
Q 026679 140 -------LEP--------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-------------GNIGVVAC 191 (235)
Q Consensus 140 -------~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-------------~~~~~v~~ 191 (235)
... .-.....++++++|+.+++-..++.|++||..++....... +.-.....
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence 000 01124678999999988888999999999997765542221 11235788
Q ss_pred EEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679 192 LKWAPRRAMFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 192 ~~~~~~~~~l~~~~--~~i~iw~~~~~~~ 218 (235)
++++++|+++++.+ +.|++|++++...
T Consensus 864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 864 LALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99999998777665 6699999987654
No 264
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.38 E-value=8.2e-11 Score=84.28 Aligned_cols=166 Identities=16% Similarity=0.262 Sum_probs=121.7
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEecCCeEEEEec
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDS 83 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~ 83 (235)
...+.+..|...|..+-|+...+++++.+.|..+.---.+.+..+..+....... +.+.-. +...|...|.+..-.+
T Consensus 105 ~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~ 182 (404)
T KOG1409|consen 105 TFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKL 182 (404)
T ss_pred chhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEE
Confidence 3566777899999999999888999999999876433334444443333222111 112111 5667777787777666
Q ss_pred cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC
Q 026679 84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 163 (235)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 163 (235)
..... .....+.+|...+.+++|.|....|+++..|..+.+||+...+.. .+.+..|...+..+..-+--+.+.+++
T Consensus 183 ~~~~~--~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-~~el~gh~~kV~~l~~~~~t~~l~S~~ 259 (404)
T KOG1409|consen 183 EQNGC--QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-AYELQGHNDKVQALSYAQHTRQLISCG 259 (404)
T ss_pred eecCC--ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-eeeeccchhhhhhhhhhhhheeeeecc
Confidence 54433 235667899999999999999999999999999999999655443 345566667788888888888999999
Q ss_pred CCCcEEEEEcCC
Q 026679 164 GDGTLHAWNINT 175 (235)
Q Consensus 164 ~dg~i~v~d~~~ 175 (235)
+||.|.+|+.+.
T Consensus 260 edg~i~~w~mn~ 271 (404)
T KOG1409|consen 260 EDGGIVVWNMNV 271 (404)
T ss_pred CCCeEEEEeccc
Confidence 999999999864
No 265
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.38 E-value=2.6e-10 Score=85.27 Aligned_cols=172 Identities=12% Similarity=0.120 Sum_probs=130.1
Q ss_pred CCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCC-eEEEEeccCCCCCCceeEeecCCCcce
Q 026679 25 VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAG-AIKLFDSRSYDKGPFDTFLVGGDTAEV 103 (235)
Q Consensus 25 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~v 103 (235)
+|.+++..|. |...+.+...+..++.-+...+.-..+..+++-++.|..|| .+-++|.++++. ......-+.|
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-----kr~e~~lg~I 404 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-----KRIEKDLGNI 404 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-----EEeeCCccce
Confidence 5778888876 67778777666655554444444466667777899999999 899999988763 3444556789
Q ss_pred eEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC----cEEEEEcCCCcee
Q 026679 104 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG----TLHAWNINTRNEV 179 (235)
Q Consensus 104 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~v~d~~~~~~~ 179 (235)
.++..+|+|++++++.....+.++|+.+++....- ....+-|+.+.|+|+++++|-+--+| .|++||+.+++..
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~id--kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID--KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec--ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 99999999999999999999999999999865432 23346799999999999999887665 4999999877765
Q ss_pred eeecCCCcceeEEEeecCCCEEEEcc
Q 026679 180 ACWNGNIGVVACLKWAPRRAMFVAAS 205 (235)
Q Consensus 180 ~~~~~~~~~v~~~~~~~~~~~l~~~~ 205 (235)
..-. ..+.=.+-+|.|++++|.--+
T Consensus 483 ~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 483 DVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EecC-CcccccCcccCCCCcEEEEEe
Confidence 4332 334445678899999886554
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=4.6e-10 Score=81.04 Aligned_cols=180 Identities=13% Similarity=0.209 Sum_probs=119.7
Q ss_pred cceEEEEecCcce----eeeeeeccCCc-eEEEcCCCCEEEEEecC---CeEEEEeccCC--CCCCceeEeecCCCccee
Q 026679 35 DHSVRIWDLRVNA----CQGILRLRGRP-TVAFDQQGLVFAVAMEA---GAIKLFDSRSY--DKGPFDTFLVGGDTAEVC 104 (235)
Q Consensus 35 d~~i~vwd~~~~~----~~~~~~~~~~~-~~~~~~~~~~l~~~~~d---g~v~i~d~~~~--~~~~~~~~~~~~~~~~v~ 104 (235)
++-|++|++.+.. ..........+ -++++|+++.|.++..+ |.|..|.+... .......... ...+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~--~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL--PGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc--CCCCCe
Confidence 4669999987432 22222233333 39999999999888654 77888777653 2211111111 123347
Q ss_pred EEEEccCCCeEEEecC-CCcEEEEEcCC-CceeeeeccCCCCCc----------ceeeEEeCCCcEEEEeCC-CCcEEEE
Q 026679 105 DIKFSNDGKSMLLTTT-NNNIYVLDAYG-GEKRCGFSLEPSPNT----------NTEATFTPDGQYVVSGSG-DGTLHAW 171 (235)
Q Consensus 105 ~~~~~~~~~~l~~~~~-d~~i~~~d~~~-~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~~~-dg~i~v~ 171 (235)
.++++++|++++++.. .|.|.++-++. |..........|.+. +....+.|++++|++... --.|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 8999999999888765 68899999865 333222122222222 677899999999988753 2369999
Q ss_pred EcCCCceeeeec---CCCcceeEEEeecCCCEEEEcc---cceEEeeCCCC
Q 026679 172 NINTRNEVACWN---GNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPS 216 (235)
Q Consensus 172 d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~ 216 (235)
++..++....-. ......+.|.|+|++++..... ++|.+|.++..
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 998776532221 2345678999999999988886 88999999774
No 267
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=3.2e-11 Score=95.01 Aligned_cols=183 Identities=10% Similarity=0.093 Sum_probs=135.6
Q ss_pred cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeE
Q 026679 15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF 94 (235)
Q Consensus 15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 94 (235)
..++|++++ +++|+-|..+|.|++.+.... . .....+... ..+|+++++|+.||.|.+..+-+.+. .
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~-----~ 106 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDE-----I 106 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc----ccCCceEEEecCCCcEEEeeccCCcc-----c
Confidence 466777777 689999999999999987433 2 222222111 56899999999999999998877664 1
Q ss_pred eecCCCcceeEEEEccC-----CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEE
Q 026679 95 LVGGDTAEVCDIKFSND-----GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLH 169 (235)
Q Consensus 95 ~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 169 (235)
.......++.+++++|+ .+.+++|+..| +.++.-+--+......++...++|.++.| .|+++|.++.+| |+
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VK 182 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cE
Confidence 22233468999999997 56799999988 88876432222222345667788999999 677999999888 89
Q ss_pred EEEcCCCceeeeecCCCc------ceeEEEeecCCCEEEEcccceEEeeCC
Q 026679 170 AWNINTRNEVACWNGNIG------VVACLKWAPRRAMFVAASSVLSFWIPN 214 (235)
Q Consensus 170 v~d~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~~~i~iw~~~ 214 (235)
|||+.+++.+..++.... ....+.|.++.++++.-+.+|+|..++
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 999998888776653322 345788998888888888889999887
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.36 E-value=9.1e-10 Score=82.44 Aligned_cols=142 Identities=16% Similarity=0.178 Sum_probs=106.4
Q ss_pred ccccceeEEEeecCCCeeEEEeccc-eEEEEecCcceeeeeeecc-CCceEEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679 12 GHKERVISLCMSPVNDSFMSGSLDH-SVRIWDLRVNACQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG 89 (235)
Q Consensus 12 ~h~~~v~~~~~~~~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 89 (235)
+|.+.|.-..+..+++-++.|..|| .+-|+|.++++.......- .+..+..+++|+.++++.....+.+.|+.++..
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv- 435 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV- 435 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-
Confidence 4667788888887888899999999 8999999888755544333 344599999999999999999999999999875
Q ss_pred CceeEeecCCCcceeEEEEccCCCeEEEecCCC----cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679 90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN----NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 160 (235)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (235)
...-....+-|+.+.|+|+++++|.+--+| .|+++|+..++.........+. .+-+|.|++++|.
T Consensus 436 ---~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~D---fsPaFD~d~ryLY 504 (668)
T COG4946 436 ---RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYD---FSPAFDPDGRYLY 504 (668)
T ss_pred ---eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccc---cCcccCCCCcEEE
Confidence 333344557799999999999999887655 5999999887765544333322 2345666666543
No 269
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.36 E-value=1.8e-11 Score=98.59 Aligned_cols=147 Identities=16% Similarity=0.145 Sum_probs=119.0
Q ss_pred eecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCC
Q 026679 22 MSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD 99 (235)
Q Consensus 22 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~ 99 (235)
++++.-++++|+.-+.|.+|+....+....+.+|...+ +.++.+|.++++.+.|.++++|++.+.+... ....+|
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgH 217 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGH 217 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccc
Confidence 34555678999999999999987444444577887766 7788899999999999999999999877533 345689
Q ss_pred CcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC
Q 026679 100 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 175 (235)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 175 (235)
...+..+.|.|+ .+++++.|-+.++|+... .....+..+.. ..+..++..++...+++++.|+.+++||+..
T Consensus 218 saRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 218 SARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred cceeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 999999999998 899999999999997644 44444444432 4588899999999999999999999999854
No 270
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.35 E-value=4.1e-10 Score=78.27 Aligned_cols=192 Identities=5% Similarity=-0.077 Sum_probs=133.0
Q ss_pred eeEEEeccceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeE
Q 026679 28 SFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCD 105 (235)
Q Consensus 28 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~ 105 (235)
.+..++.|.++++.+++.+.......... ...++++++++++++.+....|..|.+........ ..........-.+
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~-~~~~a~t~D~gF~ 208 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIE-NIYEAPTSDHGFY 208 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceee-eeEecccCCCcee
Confidence 36667888889998887665444444443 45599999999999999999999999987553222 2233344445567
Q ss_pred EEEccCCCeEEEecCCCcEEEEEcCCCceeeee---ccCCCCCcceeeEEeCCCc--EEEEeCCCCcEEEEEcCCCceee
Q 026679 106 IKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF---SLEPSPNTNTEATFTPDGQ--YVVSGSGDGTLHAWNINTRNEVA 180 (235)
Q Consensus 106 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~v~d~~~~~~~~ 180 (235)
..|+.....+|++..||++.+||++........ ..+.|.+.++.+.|++.|. +|+..-.-+.+.+.|+++++...
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 889999999999999999999999875433221 2234778999999998654 45555556789999999987654
Q ss_pred eecC-------CC-cceeEEEeecCCCEEEEcc-cceEEeeCCCCCCCC
Q 026679 181 CWNG-------NI-GVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNST 220 (235)
Q Consensus 181 ~~~~-------~~-~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~~~~ 220 (235)
.+.. |. ..|..-.|+.++.-+.+.. -.+.=|++.......
T Consensus 289 ~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~srsR~~ 337 (344)
T KOG4532|consen 289 VIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSRSRFS 337 (344)
T ss_pred EEecCccccccccccccccccccCCCcccccccchhhheeeccccceec
Confidence 4421 22 3377777877776666655 335556555444333
No 271
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.35 E-value=6.9e-10 Score=77.20 Aligned_cols=195 Identities=9% Similarity=0.068 Sum_probs=128.7
Q ss_pred EEEeecC-----CCeeEEEeccceEEEEecCcceeeeee-eccCC--ceE-EEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679 19 SLCMSPV-----NDSFMSGSLDHSVRIWDLRVNACQGIL-RLRGR--PTV-AFDQQGLVFAVAMEAGAIKLFDSRSYDKG 89 (235)
Q Consensus 19 ~~~~~~~-----~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~--~~~-~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 89 (235)
.+.|-|. ..+||.|+..|...+|...+.+....+ ..+.. ..+ ...-..-.+..++.|.++++.++......
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 4556552 347899999999999998866533222 22221 110 11112234677788888998888765432
Q ss_pred CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-eeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcE
Q 026679 90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL 168 (235)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (235)
. ......-.+.++++++|++++++.+....|..|.+.... .+...........-.+..|+.....+|++..||++
T Consensus 152 ~----~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~ 227 (344)
T KOG4532|consen 152 F----AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTC 227 (344)
T ss_pred c----eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcE
Confidence 1 111111237889999999999999999999999886543 22222222222334668899999999999999999
Q ss_pred EEEEcCCCceee-----eecCCCcceeEEEeecCCC---EEEEcc-cceEEeeCCCCC
Q 026679 169 HAWNINTRNEVA-----CWNGNIGVVACLKWAPRRA---MFVAAS-SVLSFWIPNPSS 217 (235)
Q Consensus 169 ~v~d~~~~~~~~-----~~~~~~~~v~~~~~~~~~~---~l~~~~-~~i~iw~~~~~~ 217 (235)
.|||++...... +-..|.+.+..+.|++.|. ++++-. +-+.+-|++...
T Consensus 228 ~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 228 AIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred EEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 999998754332 2245889999999998553 334444 678888887654
No 272
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.34 E-value=3.1e-09 Score=76.70 Aligned_cols=198 Identities=11% Similarity=0.102 Sum_probs=140.0
Q ss_pred eeEEEeecC-CCeeEEEeccce-EEEEecCcceeeeeeeccCCce----EEEcCCCCEEEEEec-----CCeEEEEeccC
Q 026679 17 VISLCMSPV-NDSFMSGSLDHS-VRIWDLRVNACQGILRLRGRPT----VAFDQQGLVFAVAME-----AGAIKLFDSRS 85 (235)
Q Consensus 17 v~~~~~~~~-~~~l~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~-----dg~v~i~d~~~ 85 (235)
...++.+|+ ...++.+-.-|+ ..+||..+++....+......- .+|+++|++|++.-. .|.|-+||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 346788884 456667766654 6789999999988887766544 789999999998754 58999999983
Q ss_pred CCCCCceeEeecCCCcceeEEEEccCCCeEEEec------------------CCCcEEEEEcCCCceeeeecc--CCCCC
Q 026679 86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT------------------TNNNIYVLDAYGGEKRCGFSL--EPSPN 145 (235)
Q Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------------~d~~i~~~d~~~~~~~~~~~~--~~~~~ 145 (235)
.- ...-.+..+.-....+.+.|||+.|+++- .+.++.+.|..+++.+....+ ..+..
T Consensus 87 ~~---~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 87 GY---RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred Cc---EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence 21 12333444444556788999998777752 134578888899998888776 44667
Q ss_pred cceeeEEeCCCcEEEEeCCCCc-------EEEEEcCCCceeeeec-------CCCcceeEEEeecCCCEEEEcc---cce
Q 026679 146 TNTEATFTPDGQYVVSGSGDGT-------LHAWNINTRNEVACWN-------GNIGVVACLKWAPRRAMFVAAS---SVL 208 (235)
Q Consensus 146 ~i~~~~~~~~~~~l~~~~~dg~-------i~v~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~---~~i 208 (235)
.+..+++.++|..++..-..|. +.+++. ++.+..+. .-.+.+-+|++++++.++++++ +.+
T Consensus 164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 7999999999987766543332 344443 33222222 2346789999999999998887 779
Q ss_pred EEeeCCCCCCC
Q 026679 209 SFWIPNPSSNS 219 (235)
Q Consensus 209 ~iw~~~~~~~~ 219 (235)
.+||..++...
T Consensus 242 ~~~d~~tg~~~ 252 (305)
T PF07433_consen 242 AVWDAATGRLL 252 (305)
T ss_pred EEEECCCCCEe
Confidence 99998876544
No 273
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.33 E-value=8.1e-09 Score=72.64 Aligned_cols=200 Identities=16% Similarity=0.233 Sum_probs=126.5
Q ss_pred EEeecCCCeeEEEeccceEEEEecCcc--eeeeeeeccCC-----ceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCc-
Q 026679 20 LCMSPVNDSFMSGSLDHSVRIWDLRVN--ACQGILRLRGR-----PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF- 91 (235)
Q Consensus 20 ~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~- 91 (235)
++.+.+|+.||.. .|..|.|-..++. ..+...+.+.. .-++|+||+.+||.+...|+|++||+.....-..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 5667788877765 4667777655442 23333333332 2399999999999999999999999875332100
Q ss_pred -eeEeecCCCcceeEEEEccC------CCeEEEecCCCcEEEEEcCC-----CceeeeeccCCC-CCcceeeEEeCCCcE
Q 026679 92 -DTFLVGGDTAEVCDIKFSND------GKSMLLTTTNNNIYVLDAYG-----GEKRCGFSLEPS-PNTNTEATFTPDGQY 158 (235)
Q Consensus 92 -~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~~~~-~~~i~~~~~~~~~~~ 158 (235)
.......-...|..+.|.+. ...|++-..+|.++-|-+.. .+....+.+..+ +..|.++.++|..++
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 00011122345667777542 22467777788887777632 223344444333 467999999999888
Q ss_pred EEEeCC----CC-------cEEEEEcCCCceee-----------------------e---e---cCCCcceeEEEeecCC
Q 026679 159 VVSGSG----DG-------TLHAWNINTRNEVA-----------------------C---W---NGNIGVVACLKWAPRR 198 (235)
Q Consensus 159 l~~~~~----dg-------~i~v~d~~~~~~~~-----------------------~---~---~~~~~~v~~~~~~~~~ 198 (235)
|++|+. ++ -+..|.+-++.+-. . + ......|..|..+|||
T Consensus 162 LlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg 241 (282)
T PF15492_consen 162 LLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDG 241 (282)
T ss_pred EEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCC
Confidence 887753 11 25667654432100 0 0 0124578899999999
Q ss_pred CEEEEcc--cceEEeeCCCCCCCC
Q 026679 199 AMFVAAS--SVLSFWIPNPSSNST 220 (235)
Q Consensus 199 ~~l~~~~--~~i~iw~~~~~~~~~ 220 (235)
..|++.. |.+.+|++..-.+..
T Consensus 242 ~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 242 SLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred CEEEEEEcCCeEEEEecCcchhhc
Confidence 9999997 999999997755443
No 274
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.31 E-value=1.3e-10 Score=84.67 Aligned_cols=155 Identities=17% Similarity=0.253 Sum_probs=107.1
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEc---CCCceee
Q 026679 60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA---YGGEKRC 136 (235)
Q Consensus 60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~---~~~~~~~ 136 (235)
...++.+++++++..+....+++...... .........-...-+.+.|..+......+..-|.++-+|+ ..+...
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~- 145 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE- 145 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc-
Confidence 55678899999999998888888776543 1112222222333445555555555555555555444444 333332
Q ss_pred eeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee-cCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679 137 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 213 (235)
Q Consensus 137 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~ 213 (235)
..-+|-..++.++++||+++|+++..|..|++-....-..+..+ -||..-|..++.-++.. |++++ +++++||+
T Consensus 146 --~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 146 --PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDI 222 (390)
T ss_pred --hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEec
Confidence 33456677999999999999999999999999888766666555 47999999999987655 56665 77999999
Q ss_pred CCCCCC
Q 026679 214 NPSSNS 219 (235)
Q Consensus 214 ~~~~~~ 219 (235)
..++..
T Consensus 223 ~sgk~L 228 (390)
T KOG3914|consen 223 TSGKLL 228 (390)
T ss_pred ccCCcc
Confidence 876543
No 275
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=1.4e-10 Score=82.25 Aligned_cols=203 Identities=11% Similarity=0.182 Sum_probs=135.7
Q ss_pred ccceeEEEeecCCCeeEEEeccceEEEEecCcce-----eeeeeeccC--------------CceEEEcCCC--CEEEEE
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-----CQGILRLRG--------------RPTVAFDQQG--LVFAVA 72 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~~--------------~~~~~~~~~~--~~l~~~ 72 (235)
...|+++.|...|.+|++|...|.|.++.-+... ....++.|. +..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4579999999999999999999999999754322 112233332 1225555433 467888
Q ss_pred ecCCeEEEEeccCCCC-----------------CCc----------------------eeEeecCCCcceeEEEEccCCC
Q 026679 73 MEAGAIKLFDSRSYDK-----------------GPF----------------------DTFLVGGDTAEVCDIKFSNDGK 113 (235)
Q Consensus 73 ~~dg~v~i~d~~~~~~-----------------~~~----------------------~~~~~~~~~~~v~~~~~~~~~~ 113 (235)
+.|.+|++|.+..... ++. .......|...+.++.|..|.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 8999999998865310 000 0001124666788999998887
Q ss_pred eEEEecCCCcEEEEEcCCCce-eeeeccCCCC-----CcceeeEEeCC-CcEEEEeCCCCcEEEEEcCCCce------ee
Q 026679 114 SMLLTTTNNNIYVLDAYGGEK-RCGFSLEPSP-----NTNTEATFTPD-GQYVVSGSGDGTLHAWNINTRNE------VA 180 (235)
Q Consensus 114 ~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~------~~ 180 (235)
.+++ ..|=.|.+|++.-... .......++. .-|++..|+|. ...+...+..|.|++-|++.... +.
T Consensus 186 t~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 6665 4577899998864321 2222223332 45788899995 45667778899999999984221 11
Q ss_pred e----------ecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCCC
Q 026679 181 C----------WNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSS 217 (235)
Q Consensus 181 ~----------~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~ 217 (235)
. +..-...|..+.|+++|+++++-+ -+++|||.+..+
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k 312 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK 312 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc
Confidence 1 112235788999999999999999 899999998654
No 276
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=6.7e-11 Score=87.60 Aligned_cols=219 Identities=16% Similarity=0.177 Sum_probs=159.5
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEec-cceEEEEecCcceeeeeeeccCCce-EEE--cCCC--CEEE-EEecCCe
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSL-DHSVRIWDLRVNACQGILRLRGRPT-VAF--DQQG--LVFA-VAMEAGA 77 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~-~~~--~~~~--~~l~-~~~~dg~ 77 (235)
+.+..+..|-..|.+++.+-++.++.|.+. |..++++|+++-..+..++....+- +.| ++.. ..++ +.-.+|.
T Consensus 44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~ 123 (558)
T KOG0882|consen 44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGK 123 (558)
T ss_pred eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCC
Confidence 456778889999999999999999999777 9999999998877666665544333 333 3322 1333 3346899
Q ss_pred EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC------Cceeee-------eccCCCC
Q 026679 78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG------GEKRCG-------FSLEPSP 144 (235)
Q Consensus 78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~------~~~~~~-------~~~~~~~ 144 (235)
+.++|-.....+. .....-|..+|.++.+.|.+..+++....|.|..|.... .+.... +......
T Consensus 124 i~VvD~~~d~~q~--~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~K 201 (558)
T KOG0882|consen 124 IFVVDGFGDFCQD--GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAK 201 (558)
T ss_pred cEEECCcCCcCcc--ceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccc
Confidence 9999987654322 344456889999999999999999999999999998763 111111 1122233
Q ss_pred CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec--------------------------------CCC-cceeE
Q 026679 145 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--------------------------------GNI-GVVAC 191 (235)
Q Consensus 145 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--------------------------------~~~-~~v~~ 191 (235)
....++.|+|+|..+.+-+.|..|++++.++++.+..+. .|. ..-+.
T Consensus 202 t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~ 281 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTN 281 (558)
T ss_pred cCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccce
Confidence 567889999999999999999999999999887654431 111 23466
Q ss_pred EEeecCCCEEEEcc-cceEEeeCCCCCCCCCCCCC
Q 026679 192 LKWAPRRAMFVAAS-SVLSFWIPNPSSNSTDESTD 225 (235)
Q Consensus 192 ~~~~~~~~~l~~~~-~~i~iw~~~~~~~~~~~~~~ 225 (235)
+.|...+++|+-++ =.|++.++.+.....+...+
T Consensus 282 ~~fdes~~flly~t~~gikvin~~tn~v~ri~gk~ 316 (558)
T KOG0882|consen 282 AVFDESGNFLLYGTILGIKVINLDTNTVVRILGKD 316 (558)
T ss_pred eEEcCCCCEEEeecceeEEEEEeecCeEEEEeccc
Confidence 78889999999998 56899998887766555443
No 277
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.30 E-value=3.7e-12 Score=64.07 Aligned_cols=39 Identities=36% Similarity=0.729 Sum_probs=36.9
Q ss_pred hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEe
Q 026679 4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWD 42 (235)
Q Consensus 4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 42 (235)
|++++.+++|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 278
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=2e-09 Score=81.89 Aligned_cols=166 Identities=17% Similarity=0.251 Sum_probs=114.0
Q ss_pred EEEeecCCC-eeE--EEecc---------ceEEEEecCcceeeeeee-ccCCceEEEcCCCCEEEEEe--cCCeEEEEec
Q 026679 19 SLCMSPVND-SFM--SGSLD---------HSVRIWDLRVNACQGILR-LRGRPTVAFDQQGLVFAVAM--EAGAIKLFDS 83 (235)
Q Consensus 19 ~~~~~~~~~-~l~--s~~~d---------~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~--~dg~v~i~d~ 83 (235)
.+.|++-|. +|+ +..-| .++++.+++...+...+. ...+..+.|+|+++.|+++. .-..+.+||+
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl 301 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL 301 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcC
Confidence 467877664 332 32223 357777776434433333 33455699999998877654 4668999998
Q ss_pred cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC---CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679 84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 160 (235)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (235)
+..- .+.+ ..++-+++-|+|.|++++.++- .|.|-+||+.+.+.+..+.... -+-+.|+|||++++
T Consensus 302 r~~~-----v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~----tt~~eW~PdGe~fl 370 (566)
T KOG2315|consen 302 RGKP-----VFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN----TTVFEWSPDGEYFL 370 (566)
T ss_pred CCCE-----eEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC----ceEEEEcCCCcEEE
Confidence 7521 2322 3456678889999999988776 5889999999987776555432 45589999999999
Q ss_pred EeCC------CCcEEEEEcCCCceeeeecCCCcceeEEEeecC
Q 026679 161 SGSG------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPR 197 (235)
Q Consensus 161 ~~~~------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 197 (235)
+++. |+.++||+. +|..++...-. .....+.|-|.
T Consensus 371 TATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~-sEL~qv~W~P~ 411 (566)
T KOG2315|consen 371 TATTAPRLRVDNGIKIWHY-TGSLLHEKMFK-SELLQVEWRPF 411 (566)
T ss_pred EEeccccEEecCCeEEEEe-cCceeehhhhh-HhHhheeeeec
Confidence 8864 677999998 67766554322 25778888874
No 279
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=1.1e-08 Score=79.02 Aligned_cols=176 Identities=13% Similarity=0.067 Sum_probs=106.9
Q ss_pred ceEEEEecCcceeeeeeeccCCceEEEcCCCCE-EEEEec---CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccC
Q 026679 36 HSVRIWDLRVNACQGILRLRGRPTVAFDQQGLV-FAVAME---AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 111 (235)
Q Consensus 36 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~---dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 111 (235)
..|.+-|.+.................|+|+|+. ++..+. ...|.++|+.+++. ..+....+......|+||
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-----~~lt~~~g~~~~~~~SPD 243 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-----EKIASSQGMLVVSDVSKD 243 (419)
T ss_pred ceEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-----EEEecCCCcEEeeEECCC
Confidence 356665654333332333322223899999984 554443 35688889877653 222223445566789999
Q ss_pred CCeEEEecC---CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CC--cEEEEEcCCCceeeeecCC
Q 026679 112 GKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNGN 185 (235)
Q Consensus 112 ~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~ 185 (235)
|+.++.... +..|+++|+.+++........ .......|+|||+.|+..+. .+ .|++.|+.+++.......
T Consensus 244 G~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~---~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~- 319 (419)
T PRK04043 244 GSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYP---GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH- 319 (419)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCcEEEcccCC---CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-
Confidence 987775433 456888998877654332222 22344689999998876653 23 588888877766333321
Q ss_pred CcceeEEEeecCCCEEEEcc--c---------ceEEeeCCCCCCCCCC
Q 026679 186 IGVVACLKWAPRRAMFVAAS--S---------VLSFWIPNPSSNSTDE 222 (235)
Q Consensus 186 ~~~v~~~~~~~~~~~l~~~~--~---------~i~iw~~~~~~~~~~~ 222 (235)
.. ....|+|+|++|+... . .+.+.+++++....+.
T Consensus 320 g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT 365 (419)
T PRK04043 320 GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLT 365 (419)
T ss_pred CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECC
Confidence 11 2348999999988765 1 3667777666544433
No 280
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.21 E-value=1.3e-08 Score=71.71 Aligned_cols=169 Identities=12% Similarity=0.121 Sum_probs=110.8
Q ss_pred eeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC---------CceEEEcC---C---CCEEEEEecCCeEEEE
Q 026679 17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG---------RPTVAFDQ---Q---GLVFAVAMEAGAIKLF 81 (235)
Q Consensus 17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---------~~~~~~~~---~---~~~l~~~~~dg~v~i~ 81 (235)
=.-++||||+.+||.+...|+|+++|+... .+..+.... +..+.|-+ + ...|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 356899999999999999999999998643 333332211 11133432 1 2256677778888887
Q ss_pred eccCCC---CCCceeEeecC-CCcceeEEEEccCCCeEEEecCC----C-------cEEEEEcCCCceeee---------
Q 026679 82 DSRSYD---KGPFDTFLVGG-DTAEVCDIKFSNDGKSMLLTTTN----N-------NIYVLDAYGGEKRCG--------- 137 (235)
Q Consensus 82 d~~~~~---~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d----~-------~i~~~d~~~~~~~~~--------- 137 (235)
-+..+. -.....+.+.. ....|.++.++|..+.|++|+.. + -+..|.+-++.+-..
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~ 204 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI 204 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence 764322 11223334433 36789999999998888887642 1 255665532221100
Q ss_pred ------------e-----cc-CCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCC
Q 026679 138 ------------F-----SL-EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI 186 (235)
Q Consensus 138 ------------~-----~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 186 (235)
. .. ......|..|..||||++|++...+|.|.+|++.+.+....+..++
T Consensus 205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 0 00 1223568899999999999999999999999999988877776443
No 281
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.21 E-value=4.7e-08 Score=70.59 Aligned_cols=195 Identities=16% Similarity=0.215 Sum_probs=122.5
Q ss_pred EEEeec-CCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeec
Q 026679 19 SLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG 97 (235)
Q Consensus 19 ~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 97 (235)
++.|.+ ++.++++--..+.|..|+..++.... +.......+++...+..++++...+ +.++|..+++..........
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~ 81 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPGPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDG 81 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSSEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCCCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCC
Confidence 568888 66667776678999999987765433 4444444477773335555555544 45558877643222111112
Q ss_pred C-CCcceeEEEEccCCCeEEEecCC--------CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE-EeCCCCc
Q 026679 98 G-DTAEVCDIKFSNDGKSMLLTTTN--------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGT 167 (235)
Q Consensus 98 ~-~~~~v~~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~ 167 (235)
. .....+.+++.|+|+..++.... |.|..++.. ++....... -...+.++|+|+++.|+ +-+..+.
T Consensus 82 ~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~---~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 82 GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG---LGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE---ESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC---cccccceEECCcchheeecccccce
Confidence 2 34568899999999966665432 568888876 554333222 23367899999998775 5677888
Q ss_pred EEEEEcCCCce-------eeeecCCCcceeEEEeecCCCEEEEc--ccceEEeeCCCCCCC
Q 026679 168 LHAWNINTRNE-------VACWNGNIGVVACLKWAPRRAMFVAA--SSVLSFWIPNPSSNS 219 (235)
Q Consensus 168 i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~i~iw~~~~~~~~ 219 (235)
|..|++..... ...+....+..-.+++..+|++.++. ++.|.+++.++....
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~ 218 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLR 218 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEE
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEE
Confidence 99999863221 12222222357899999999988774 478999998855433
No 282
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.20 E-value=1.3e-10 Score=91.25 Aligned_cols=204 Identities=16% Similarity=0.249 Sum_probs=139.3
Q ss_pred hhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCccee-eeeee--ccCCceEEEcCCCCEEEEEecCCeEEEEec
Q 026679 8 RYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNAC-QGILR--LRGRPTVAFDQQGLVFAVAMEAGAIKLFDS 83 (235)
Q Consensus 8 ~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~-~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~ 83 (235)
-.+.||...|+.+.|+|.. ..+++++.|-.+..||++.... +..+. ......++|+-....+.+.+....+.+||.
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~ 187 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL 187 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence 3467899999999999965 6799999999999999987643 22222 122344889886555666667788999999
Q ss_pred cCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc--EEE
Q 026679 84 RSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ--YVV 160 (235)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~ 160 (235)
+.+.. ......+|...+..++|.. -...+.+.+.|++|+.||............. ...++..-.+-|-|. ++.
T Consensus 188 r~gs~---pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t~~piw~~r~~Pfg~g~~~m 263 (1081)
T KOG0309|consen 188 RKGST---PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT-TNFPIWRGRYLPFGEGYCIM 263 (1081)
T ss_pred cCCCc---ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc-ccCcceeccccccCceeEec
Confidence 98653 3555667888899998876 2345788899999999998765433332222 224566667777443 222
Q ss_pred EeCCCCcEEEEEcCC----------CceeeeecCCCcceeEEEeecCC----------CEEEEcc--cceEEeeCCC
Q 026679 161 SGSGDGTLHAWNINT----------RNEVACWNGNIGVVACLKWAPRR----------AMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 161 ~~~~dg~i~v~d~~~----------~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~--~~i~iw~~~~ 215 (235)
---.+..+.+++.++ .++++.+.+|...|....|-..+ -.|++-+ .++++|-+..
T Consensus 264 p~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 264 PMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 111222444444332 45688999999888877775432 3677777 6699998764
No 283
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.19 E-value=1.3e-08 Score=85.50 Aligned_cols=198 Identities=13% Similarity=0.172 Sum_probs=134.5
Q ss_pred cccceeEEEeecCCCeeEEEeccceEEEE----ecCcceeeeeeec-cCCceEEEcCCCCEEEEEecCCeEEEEecc---
Q 026679 13 HKERVISLCMSPVNDSFMSGSLDHSVRIW----DLRVNACQGILRL-RGRPTVAFDQQGLVFAVAMEAGAIKLFDSR--- 84 (235)
Q Consensus 13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vw----d~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~--- 84 (235)
..+.|.++.+-++...++.+..+|.|.+. +..+......-.. .++.+++|+||+++++..+.++++.+-+..
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~ 153 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP 153 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence 34689999999999888888899999999 5554443332222 345669999999999999999888775321
Q ss_pred -C-------------------CCCC--------Cc-------ee------EeecCCCcceeEEEEccCCCeEEEecC---
Q 026679 85 -S-------------------YDKG--------PF-------DT------FLVGGDTAEVCDIKFSNDGKSMLLTTT--- 120 (235)
Q Consensus 85 -~-------------------~~~~--------~~-------~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~--- 120 (235)
. +++. .. .. ..+. ....-..++|-.||.++++.+-
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcC
Confidence 0 0000 00 00 0011 2234557899999999998764
Q ss_pred C---CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC---CCcEEEEEcCCCceeeeec----CCCccee
Q 026679 121 N---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG---DGTLHAWNINTRNEVACWN----GNIGVVA 190 (235)
Q Consensus 121 d---~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~----~~~~~v~ 190 (235)
. ..+++|+- .|.....-+ .-.+--.+++|.|.|++||+.-. ...|.+|.- +|..-..+. .....|.
T Consensus 233 ~~~~R~iRVy~R-eG~L~stSE--~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 233 TGSRRVIRVYSR-EGELQSTSE--PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred CCceeEEEEECC-CceEEeccc--cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceee
Confidence 2 57999994 466544333 22233456899999999998754 455778874 554444432 3456899
Q ss_pred EEEeecCCCEEEEcc-cceEEeeCCC
Q 026679 191 CLKWAPRRAMFVAAS-SVLSFWIPNP 215 (235)
Q Consensus 191 ~~~~~~~~~~l~~~~-~~i~iw~~~~ 215 (235)
.+.|++|+..|+..- ..|.+|-...
T Consensus 309 ~l~Wn~ds~iLAv~~~~~vqLWt~~N 334 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDRVQLWTRSN 334 (928)
T ss_pred EEEECCCCCEEEEEecCCceEEEeeC
Confidence 999999999999976 5699997654
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.19 E-value=1.3e-08 Score=86.93 Aligned_cols=160 Identities=11% Similarity=0.183 Sum_probs=108.3
Q ss_pred eEEEeec-CCCeeEEEeccceEEEEecCcceeeeeeec-----------------cCCceEEEcCCCCEE-EEEecCCeE
Q 026679 18 ISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRL-----------------RGRPTVAFDQQGLVF-AVAMEAGAI 78 (235)
Q Consensus 18 ~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l-~~~~~dg~v 78 (235)
..++++| ++..+++.+.++.|++||..++.... +.+ .....++++|+++.| ++-..++.|
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 5789999 45666777788899999987764321 111 011228899998854 455567999
Q ss_pred EEEeccCCCCCCc---------eeEeecCC--------CcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccC
Q 026679 79 KLFDSRSYDKGPF---------DTFLVGGD--------TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE 141 (235)
Q Consensus 79 ~i~d~~~~~~~~~---------~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 141 (235)
++||+.++..... ........ -.....++++++|+.+++-..++.|++||..++.........
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC
Confidence 9999876432000 00000000 112457899999998888888999999999877654322110
Q ss_pred -----------CCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCce
Q 026679 142 -----------PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178 (235)
Q Consensus 142 -----------~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~ 178 (235)
..-.....++++++|+.+++-+.++.|++||+.+++.
T Consensus 845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1112467899999999989989999999999988764
No 285
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.17 E-value=1.8e-09 Score=86.68 Aligned_cols=179 Identities=12% Similarity=0.158 Sum_probs=137.5
Q ss_pred CCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeE
Q 026679 26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCD 105 (235)
Q Consensus 26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~ 105 (235)
+..++.|+.-..+..+|+++.+..+........+.....+++.+++|...|+|.+-|.++.+. ...+..|.+.+.+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~----iht~~aHs~siSD 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFET----IHTFDAHSGSISD 222 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCce----eeeeeccccceee
Confidence 456777777777888999888887777766655666667889999999999999999998776 7778889999986
Q ss_pred EEEccCCCeEEEecC---------CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC-CcEEEEeCCCCcEEEEEc--
Q 026679 106 IKFSNDGKSMLLTTT---------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD-GQYVVSGSGDGTLHAWNI-- 173 (235)
Q Consensus 106 ~~~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~-- 173 (235)
+.. .|+.|++++. |.-|++||+|..+.+..+..+..+ .-+.|.|. ...+++++..|...+-|.
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P---~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP---QFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc---hhhhhcccccceEEEEecccceeeccccc
Confidence 655 5888998875 455899999998877766665543 33778884 557888889999999993
Q ss_pred -CCCc-eeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679 174 -NTRN-EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 213 (235)
Q Consensus 174 -~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~ 213 (235)
.+.. -+..+......+..+.+++++..++.+. |.|.+|.-
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 3221 1222333345699999999999999998 88999973
No 286
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=5.5e-11 Score=95.11 Aligned_cols=195 Identities=17% Similarity=0.249 Sum_probs=140.3
Q ss_pred hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecC--CeEEE
Q 026679 5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEA--GAIKL 80 (235)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d--g~v~i 80 (235)
+..+.|+.|+...+|++|+.+.++|+.|+..|.|+++++.+|........|+..+ +.-+.+|..+++.+.- .-..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 4566788899999999999999999999999999999999999999999998776 4445588776665543 35788
Q ss_pred EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCC--CCCcceeeEEeCCCcE
Q 026679 81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP--SPNTNTEATFTPDGQY 158 (235)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~ 158 (235)
|++..-. .+ ...+ ..-.++.|+.....-+.|+......+||+.++.....+-... ....-+...|+|+..+
T Consensus 1172 W~~~s~~-~~--~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1172 WDASSTG-GP--RHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred hcccccc-Cc--cccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 9987622 11 1111 234567788766556667777789999999988776632211 1122366889999888
Q ss_pred EEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcccceEEeeCCC
Q 026679 159 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNP 215 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~ 215 (235)
++- || .+||++..+.++.+...... ..=.|+|.|.-++..+ .|||+.+
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS---EIwD~RT 1292 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS---EIWDMRT 1292 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec---hhhhhHH
Confidence 874 55 47999988877777544322 2335899998888776 4576654
No 287
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.16 E-value=7e-08 Score=69.84 Aligned_cols=184 Identities=12% Similarity=0.075 Sum_probs=120.3
Q ss_pred EEeecCCCeeEEEe-----ccceEEEEecC-cceeeeeeeccCCce--EEEcCCCCEEEEEec-----------------
Q 026679 20 LCMSPVNDSFMSGS-----LDHSVRIWDLR-VNACQGILRLRGRPT--VAFDQQGLVFAVAME----------------- 74 (235)
Q Consensus 20 ~~~~~~~~~l~s~~-----~d~~i~vwd~~-~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~----------------- 74 (235)
-.||+||++|++.- ..|.|-|||.. ..+.+..+..+.+-- +.+.|+++.|+++..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 47999999998864 35789999998 567777787777543 889999988887741
Q ss_pred -CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCc-------EEEEEcCCCceeeeeccC-----
Q 026679 75 -AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN-------IYVLDAYGGEKRCGFSLE----- 141 (235)
Q Consensus 75 -dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------i~~~d~~~~~~~~~~~~~----- 141 (235)
+.++...|..+++...........|.-.+..+++.++|..++..-..|. |.+++ .++....+...
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~ 213 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWR 213 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHH
Confidence 1234444555544311111111446678999999999875555433332 33333 33333333322
Q ss_pred CCCCcceeeEEeCCCcEEEEeC-CCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cce
Q 026679 142 PSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVL 208 (235)
Q Consensus 142 ~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i 208 (235)
.-.+.+-++++++++.++++.+ .-+.+.+||..+++.+....- ..+..++-.+++ ++++.+ |.+
T Consensus 214 ~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~G~~ 279 (305)
T PF07433_consen 214 RLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQGQL 279 (305)
T ss_pred hhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCCccE
Confidence 2236688999999998886554 567899999999998877653 346677777776 555555 543
No 288
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.16 E-value=6.8e-08 Score=72.16 Aligned_cols=162 Identities=19% Similarity=0.223 Sum_probs=111.0
Q ss_pred eEEEeecCCCeeEEEe-c-cceEEEEecCcceeeeeeeccCCc----------------------------------e-E
Q 026679 18 ISLCMSPVNDSFMSGS-L-DHSVRIWDLRVNACQGILRLRGRP----------------------------------T-V 60 (235)
Q Consensus 18 ~~~~~~~~~~~l~s~~-~-d~~i~vwd~~~~~~~~~~~~~~~~----------------------------------~-~ 60 (235)
..++++|||++|+... . +..|-+.|+.+++.+..+...... . +
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~v 187 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEV 187 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeee
Confidence 3678999999888765 3 688999999877666544322100 0 0
Q ss_pred ------------EEcC-CCCEEEEEecCCeEEEEeccCCCCCCceeEee--------cCCCcceeEEEEccCCCeEEEec
Q 026679 61 ------------AFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV--------GGDTAEVCDIKFSNDGKSMLLTT 119 (235)
Q Consensus 61 ------------~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~ 119 (235)
.+.+ +++.+++... |.|.+.|+............. .-......-++++|+++.+++..
T Consensus 188 f~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~ 266 (352)
T TIGR02658 188 FHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLA 266 (352)
T ss_pred ecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEe
Confidence 1123 6666666665 889999865443221111111 11233444599999999888843
Q ss_pred C----------CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc-EEEEeC-CCCcEEEEEcCCCceeeeec
Q 026679 120 T----------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVSGS-GDGTLHAWNINTRNEVACWN 183 (235)
Q Consensus 120 ~----------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~v~d~~~~~~~~~~~ 183 (235)
. .+.|.++|..+++.+..+.... .+..++++||++ +|++.. .++.|.++|..+++.+..+.
T Consensus 267 ~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 267 DQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred cCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 2 2579999999999988776542 478899999999 777665 57889999999999988873
No 289
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.15 E-value=1.7e-07 Score=67.76 Aligned_cols=178 Identities=15% Similarity=0.179 Sum_probs=113.9
Q ss_pred eeEEEee-cCCCeeEEEeccceEEEEecCcceeeeeeecc----CC---ceEEEcCCCCEEEEEecC--------CeEEE
Q 026679 17 VISLCMS-PVNDSFMSGSLDHSVRIWDLRVNACQGILRLR----GR---PTVAFDQQGLVFAVAMEA--------GAIKL 80 (235)
Q Consensus 17 v~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~----~~---~~~~~~~~~~~l~~~~~d--------g~v~i 80 (235)
...+++. +++ .|+.+..++ +.++|..+++........ .. +-+++.|+|++.++.... |.+..
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 5567777 554 455555544 556698888665555432 11 128999999977776543 45666
Q ss_pred EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEE-EecCCCcEEEEEcCCCce--e--ee-eccCCCCCcceeeEEeC
Q 026679 81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSML-LTTTNNNIYVLDAYGGEK--R--CG-FSLEPSPNTNTEATFTP 154 (235)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~--~--~~-~~~~~~~~~i~~~~~~~ 154 (235)
++.. ++ .......-...+.++|+|+++.|+ +-+..+.|..|++..... . .. .......+..-.+++.+
T Consensus 120 ~~~~-~~-----~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~ 193 (246)
T PF08450_consen 120 IDPD-GK-----VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS 193 (246)
T ss_dssp EETT-SE-----EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT
T ss_pred ECCC-Ce-----EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC
Confidence 6665 22 111222234578999999998776 556688899999864322 1 11 22233223477899999
Q ss_pred CCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEee-cCCCEEEE
Q 026679 155 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA-PRRAMFVA 203 (235)
Q Consensus 155 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~ 203 (235)
+|++.++....+.|.++|.+ |+.+..+......+++++|. |+...|..
T Consensus 194 ~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 194 DGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp TS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred CCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 99988888788999999986 88888887665689999995 56555443
No 290
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=2.8e-08 Score=79.59 Aligned_cols=195 Identities=15% Similarity=0.141 Sum_probs=130.0
Q ss_pred EeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceE--EEcC-CCCEEEEEecCC-----eEEEEeccCCCCCC--
Q 026679 21 CMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV--AFDQ-QGLVFAVAMEAG-----AIKLFDSRSYDKGP-- 90 (235)
Q Consensus 21 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~-~~~~l~~~~~dg-----~v~i~d~~~~~~~~-- 90 (235)
+|++.+..++.|+.+|.|.+.+ ..-+.+..++......+ -+.- +...|++.+.|+ .+++|+++..+...
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 4677788999999999988876 23444466666554432 2222 335677766654 58999998654322
Q ss_pred cee--Eee-----cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcC--CCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679 91 FDT--FLV-----GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY--GGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 161 (235)
Q Consensus 91 ~~~--~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 161 (235)
... ... ...+.++.+++.+.+-+.+++|-.+|.|..+.-. ..+..+..-.+....+|+.+++..+++.++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 212 111 1235788999999999999999999999988521 1111122223455688999999998887333
Q ss_pred eCCCCcEEEEEcCCCce-eeeecCCCcceeEEEeecCCC-EEEEcccceEEeeCCCC
Q 026679 162 GSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAPRRA-MFVAASSVLSFWIPNPS 216 (235)
Q Consensus 162 ~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~i~iw~~~~~ 216 (235)
...-..|.+|.+....+ ...+..|..+..|-.+++... ++++++.-+.+|+.+..
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGR 245 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCc
Confidence 33344689999874332 444667778999999998666 55555688999998754
No 291
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=1.5e-09 Score=85.19 Aligned_cols=194 Identities=15% Similarity=0.247 Sum_probs=135.6
Q ss_pred hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeee-eeeccC---CceEEEcCCCCEEEEEecCCeEEEE
Q 026679 6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG-ILRLRG---RPTVAFDQQGLVFAVAMEAGAIKLF 81 (235)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~i~ 81 (235)
.-+++.||++.|.-+.|+.+.+.|-|+..+|.|.||-+-.+.-.. .+.... +.+++|..+|..++....||.|.+=
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVG 142 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVG 142 (1189)
T ss_pred hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEE
Confidence 446789999999999999998999999999999999987664222 222222 3348999999999999999999887
Q ss_pred eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCcee-----eeec----cCCCCCcceeeEE
Q 026679 82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR-----CGFS----LEPSPNTNTEATF 152 (235)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-----~~~~----~~~~~~~i~~~~~ 152 (235)
.+..... .-..+.+ .....+.|++|.+.++.+-.+|.+.+||....-.. .... ....+..+..+.|
T Consensus 143 svdGNRI---wgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w 217 (1189)
T KOG2041|consen 143 SVDGNRI---WGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW 217 (1189)
T ss_pred eecccee---cchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence 7765332 1111111 23457889999999999999999999997532110 0000 0111122444444
Q ss_pred --------eCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679 153 --------TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205 (235)
Q Consensus 153 --------~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 205 (235)
-|+...|+.+-.+|.+.+-.-.+......+. ..-.+..+.|+++|..|+.++
T Consensus 218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEcc
Confidence 3577889999999998887654443333333 336788999999999999987
No 292
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.3e-08 Score=77.76 Aligned_cols=182 Identities=10% Similarity=0.039 Sum_probs=129.3
Q ss_pred eEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEec-----------CCeEEEEeccCC
Q 026679 18 ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAME-----------AGAIKLFDSRSY 86 (235)
Q Consensus 18 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------dg~v~i~d~~~~ 86 (235)
+-+.|||.|.+|+|-..-| |.+|--.+...++.+..+...-+.|||..++|++-+. ...+.|||+.++
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 5689999999999998766 8899877777888888888888999999999998753 257999999998
Q ss_pred CCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC--
Q 026679 87 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-- 164 (235)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 164 (235)
......... ......-.-+.||.|++++|.-.. ..|.+|+..+-.++-...+.. ..|....|+|.++.||.=..
T Consensus 293 ~lkrsF~~~-~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki--~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 293 LLKRSFPVI-KSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKI--SGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred chhcceecc-CCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCC--ccccCcccCCCcceEEEEcccc
Confidence 753221111 111122335789999998887665 569999977644433323322 44888999999998875432
Q ss_pred ---CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEc
Q 026679 165 ---DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA 204 (235)
Q Consensus 165 ---dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 204 (235)
-..+.+-.+.+++.+.+..-+.-.=..+.|-.+|.+|+.-
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvk 411 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVK 411 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEE
Confidence 2346777777777776665554444567788888888754
No 293
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.11 E-value=5.9e-08 Score=69.66 Aligned_cols=185 Identities=16% Similarity=0.119 Sum_probs=117.2
Q ss_pred CCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEee-cCC--C-
Q 026679 25 VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV-GGD--T- 100 (235)
Q Consensus 25 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~~--~- 100 (235)
++..+++++.++.+..||..+|+.+................+..++++..++.+..+|..+++. .... ... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~----~W~~~~~~~~~~ 110 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKV----LWSIYLTSSPPA 110 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCE----EEEEEE-SSCTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcce----eeeecccccccc
Confidence 5677888889999999999999998888764432221233555667777888999999888775 2221 111 1
Q ss_pred cceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCc--------ceeeEEeCCCcEEEEeCCCCcEEEEE
Q 026679 101 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT--------NTEATFTPDGQYVVSGSGDGTLHAWN 172 (235)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~dg~i~v~d 172 (235)
..........++..++++..++.|..+|+++|+.+........... +..-....++ .++.++.++.+..+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVD 189 (238)
T ss_dssp STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEE
T ss_pred ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEE
Confidence 1112223333477888888899999999999999877766432211 1111122244 677777777544449
Q ss_pred cCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679 173 INTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~ 217 (235)
+.+++.+-... ...+..+ ..+++..|+.++ +.+..||.++++
T Consensus 190 ~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 190 LATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp TTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred CCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 99998664333 2223331 345666666665 889999998764
No 294
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.09 E-value=1.4e-09 Score=85.58 Aligned_cols=200 Identities=12% Similarity=0.212 Sum_probs=139.5
Q ss_pred ccceeEEEeecCCCeeEEEeccceEEEEecCcc-eeeeee---eccCCceEEEcCC--CCEEEEEecCCeEEEEeccCCC
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-ACQGIL---RLRGRPTVAFDQQ--GLVFAVAMEAGAIKLFDSRSYD 87 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~---~~~~~~~~~~~~~--~~~l~~~~~dg~v~i~d~~~~~ 87 (235)
.+.+.++..+|.|+-++.++.-| +.+-|+... .+...+ ..-.+.-..|+|. -.+-++......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 35778889999999899888877 556677653 222222 2222333667664 3455666666677889987655
Q ss_pred CCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC
Q 026679 88 KGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 166 (235)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (235)
.. ...+.+.+|...++.+.|+|+ ...+++++.|..+..||+++.....-.. ..-......+.|+-....+++.+...
T Consensus 103 ~~-aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-~~w~s~asqVkwnyk~p~vlasshg~ 180 (1081)
T KOG0309|consen 103 SN-AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-SSWRSAASQVKWNYKDPNVLASSHGN 180 (1081)
T ss_pred cc-ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-ecccccCceeeecccCcchhhhccCC
Confidence 32 345677899999999999985 4578888999999999999865432222 22224467789987555566666677
Q ss_pred cEEEEEcCC-CceeeeecCCCcceeEEEeecCC-CEEEEcc--cceEEeeCCCC
Q 026679 167 TLHAWNINT-RNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 167 ~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~~i~iw~~~~~ 216 (235)
.|.+||++. +.++..+++|...|..+.|..-. ..+.+.+ ++++.|+++..
T Consensus 181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred ceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 899999985 45678889999999999987632 2333443 88999999654
No 295
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.08 E-value=1.1e-07 Score=71.93 Aligned_cols=193 Identities=16% Similarity=0.237 Sum_probs=132.1
Q ss_pred cceeEEEeecCCC--eeEE-----EeccceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEe-----------c
Q 026679 15 ERVISLCMSPVND--SFMS-----GSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAM-----------E 74 (235)
Q Consensus 15 ~~v~~~~~~~~~~--~l~s-----~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~-----------~ 74 (235)
..|....|+|.++ .|+. .+.++++++|.+..+..+.+-..-. ...+.|.+.|+++++-. .
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 4677888898643 3443 4668899999998666555443333 23388999998776532 1
Q ss_pred CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEec--CCCcEEEEEcCCCceeeeeccCCCCCcceeeEE
Q 026679 75 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 152 (235)
Q Consensus 75 dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~ 152 (235)
...+.+++++.... ... ....++|..++|.|.++.+++.+ .+..+.++|++.. ....+. .. .-..+.|
T Consensus 254 esnLyl~~~~e~~i----~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P-e~---~rNT~~f 323 (561)
T COG5354 254 ESNLYLLRITERSI----PVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP-EQ---KRNTIFF 323 (561)
T ss_pred cceEEEEeeccccc----cee-ccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC-Cc---ccccccc
Confidence 35678888875432 111 14568999999999988877655 6888999999876 332222 22 2345889
Q ss_pred eCCCcEEEEeCC---CCcEEEEEcCCCceee-eecCCCcceeEEEeecCCCEEEEcc--------cceEEeeCCCCCCC
Q 026679 153 TPDGQYVVSGSG---DGTLHAWNINTRNEVA-CWNGNIGVVACLKWAPRRAMFVAAS--------SVLSFWIPNPSSNS 219 (235)
Q Consensus 153 ~~~~~~l~~~~~---dg~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~--------~~i~iw~~~~~~~~ 219 (235)
+|.+++++.++- .|.+-+||......+. .+.+. ...-+.|+|+++++.+.. ..++||++.+....
T Consensus 324 sp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 324 SPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred cCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 999999988665 4779999986554443 55443 345578999999998874 45999999776543
No 296
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.08 E-value=1.2e-07 Score=79.84 Aligned_cols=200 Identities=11% Similarity=0.170 Sum_probs=127.1
Q ss_pred cccceeEEEeecCCCeeEEEec------cceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEec---CCeEEEE
Q 026679 13 HKERVISLCMSPVNDSFMSGSL------DHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAME---AGAIKLF 81 (235)
Q Consensus 13 h~~~v~~~~~~~~~~~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~---dg~v~i~ 81 (235)
+...-..++|-.||+++|+.+. -+.+|||+- .|....+-..-. ...++|.|.|+++|+.-. ...|.+|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 3345567899999999998765 257999995 466544443222 234999999999998865 4567777
Q ss_pred eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee--eccCCCCCcceeeEEeCC-CcE
Q 026679 82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG--FSLEPSPNTNTEATFTPD-GQY 158 (235)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~~~i~~~~~~~~-~~~ 158 (235)
.-+...... ...........|..+.|++|+..|+....|. |.+|-..+.....+ +..... ..+..+.|+|. ...
T Consensus 287 ErNGLrhge-F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~ 363 (928)
T PF04762_consen 287 ERNGLRHGE-FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLR 363 (928)
T ss_pred ecCCcEeee-EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCE
Confidence 755433221 1222234566899999999999999877655 99999887654333 333222 23445899994 444
Q ss_pred EEEeCCCCcEEEEEcC----CCc--------eeeeec-----------------------CCCcceeEEEeecCCCEEEE
Q 026679 159 VVSGSGDGTLHAWNIN----TRN--------EVACWN-----------------------GNIGVVACLKWAPRRAMFVA 203 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~----~~~--------~~~~~~-----------------------~~~~~v~~~~~~~~~~~l~~ 203 (235)
|...+.+|.+..+++. .+. .+..+. ....+|.+++|++++..+++
T Consensus 364 L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~av 443 (928)
T PF04762_consen 364 LHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAV 443 (928)
T ss_pred EEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEE
Confidence 6666665666554431 110 011110 12468999999998864433
Q ss_pred --cccceEEeeCCCC
Q 026679 204 --ASSVLSFWIPNPS 216 (235)
Q Consensus 204 --~~~~i~iw~~~~~ 216 (235)
..+.+.+|.....
T Consensus 444 l~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 444 LTSDGSLSIYEWDLK 458 (928)
T ss_pred EECCCCEEEEEecCC
Confidence 3488999986554
No 297
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.07 E-value=1.5e-09 Score=92.67 Aligned_cols=184 Identities=10% Similarity=0.172 Sum_probs=129.9
Q ss_pred CeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEE
Q 026679 27 DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI 106 (235)
Q Consensus 27 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 106 (235)
+.+.....++...-|..+.......-..++...+.-+|...+.++|+.||.+++|.-..++. .......+. ..|+.+
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~--v~~~rt~g~-s~vtr~ 2257 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ--VVCFRTAGN-SRVTRS 2257 (2439)
T ss_pred ccCCcccCCccccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe--EEEeeccCc-chhhhh
Confidence 33444444555555554444444444445555577788899999999999999999876553 223333344 889999
Q ss_pred EEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC---CCCcEEEEEcCC-Cceeeee
Q 026679 107 KFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS---GDGTLHAWNINT-RNEVACW 182 (235)
Q Consensus 107 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~v~d~~~-~~~~~~~ 182 (235)
.|+.+|+.+..+..||.+.+|... .+... ....|......+.|-. ..+++++ .++.+.+||..- +..-..-
T Consensus 2258 ~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~--s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQAS-PKPYT--SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhcccCCceeeeccCCceeecccC-Cccee--ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 999999999999999999999986 33332 3444555566677754 5666654 468899999642 1111122
Q ss_pred cCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679 183 NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 183 ~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~ 218 (235)
..|.+.++++++.|..+.+++|+ |.+++||++..++
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence 67999999999999999999999 8899999976543
No 298
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=1.8e-09 Score=84.81 Aligned_cols=121 Identities=12% Similarity=0.146 Sum_probs=96.3
Q ss_pred EeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 173 (235)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~ 173 (235)
..+.+|...|..+.|+.+.+.|-+...+|.|.+|-+-.++....+.....++.|.+++|..+|..++..-.||.|.|=.+
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 45678999999999999999999999999999999999988777666777788999999999999999999999988777
Q ss_pred CCCcee-eeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679 174 NTRNEV-ACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 174 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~ 216 (235)
...+.- ..+++ .....+.|++|.+.++.+- |.+.+||..+.
T Consensus 145 dGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgn 188 (1189)
T KOG2041|consen 145 DGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGN 188 (1189)
T ss_pred ccceecchhcch--heccceeecccHHHHHhhhcCCcEEEeccccc
Confidence 433221 12222 2345788999988777664 77888887654
No 299
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.03 E-value=9.2e-08 Score=72.38 Aligned_cols=196 Identities=14% Similarity=0.164 Sum_probs=134.4
Q ss_pred cceeEEEeecCCCeeEEEeccc---------------eEEEEecCcceeeeeeeccCCc-----eEEEcCCCCEEEEEec
Q 026679 15 ERVISLCMSPVNDSFMSGSLDH---------------SVRIWDLRVNACQGILRLRGRP-----TVAFDQQGLVFAVAME 74 (235)
Q Consensus 15 ~~v~~~~~~~~~~~l~s~~~d~---------------~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~ 74 (235)
..|..+.|+|++++|.+-+... .+.+||+.++..+..+.....+ .+.|+-+++++|-. .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 4688899999999999876543 4899999999999888776654 58888888876655 3
Q ss_pred CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCC--eEEE-----ecCCCcEEEEEcCCCceeeeeccCCCCCcc
Q 026679 75 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK--SMLL-----TTTNNNIYVLDAYGGEKRCGFSLEPSPNTN 147 (235)
Q Consensus 75 dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~-----~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 147 (235)
...+.++++ +..........+. ...+....|+|.++ .|+. ....+.+++|.+..+..+....+-.-. -
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~--~ 225 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS--G 225 (561)
T ss_pred cCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec--c
Confidence 457999996 3332211111111 35688889999643 3443 345788999999877766554443221 2
Q ss_pred eeeEEeCCCcEEEEeC-----------CCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc----cceEEee
Q 026679 148 TEATFTPDGQYVVSGS-----------GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS----SVLSFWI 212 (235)
Q Consensus 148 ~~~~~~~~~~~l~~~~-----------~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~i~iw~ 212 (235)
..+.|.+.|++|++-- ....++++++.... +.......++|...+|.|.++.+++.+ ..+.+++
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecc
Confidence 4588999999876431 13468888886333 333335678999999999988777665 4477777
Q ss_pred CCCCC
Q 026679 213 PNPSS 217 (235)
Q Consensus 213 ~~~~~ 217 (235)
+++..
T Consensus 305 lr~Nl 309 (561)
T COG5354 305 LRGNL 309 (561)
T ss_pred cccce
Confidence 77653
No 300
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=2.3e-09 Score=82.03 Aligned_cols=153 Identities=14% Similarity=0.186 Sum_probs=113.6
Q ss_pred CCCCEEEEEecCCeEEEEeccCCCCC---CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc
Q 026679 64 QQGLVFAVAMEAGAIKLFDSRSYDKG---PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL 140 (235)
Q Consensus 64 ~~~~~l~~~~~dg~v~i~d~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 140 (235)
.+.+.+++++.|.+|++|.++..... ....+....|..+|.++.|-.+-+++++ .||.|.+||.--++.+.....
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~d 822 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMED 822 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhc
Confidence 45677999999999999999754322 2356778899999999999988776654 578899999888877765544
Q ss_pred CCCCCcceeeEEeC--CCcEEEEe-CCCCcEEEEEcCCCceeeeec-----CCCcceeEEEeecCCCEEEEcc--cceEE
Q 026679 141 EPSPNTNTEATFTP--DGQYVVSG-SGDGTLHAWNINTRNEVACWN-----GNIGVVACLKWAPRRAMFVAAS--SVLSF 210 (235)
Q Consensus 141 ~~~~~~i~~~~~~~--~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~--~~i~i 210 (235)
....+.+..+..-| +...++.| +...+++++|.+..+....++ +....+.+++..|.|+.++++= |.+.+
T Consensus 823 apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~ 902 (1034)
T KOG4190|consen 823 APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAI 902 (1034)
T ss_pred CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEE
Confidence 44434444444434 34455444 678899999999988776664 3446789999999999998883 88888
Q ss_pred eeCCCCCC
Q 026679 211 WIPNPSSN 218 (235)
Q Consensus 211 w~~~~~~~ 218 (235)
.|.++++.
T Consensus 903 LDaR~G~v 910 (1034)
T KOG4190|consen 903 LDARNGKV 910 (1034)
T ss_pred EecCCCce
Confidence 88877663
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.99 E-value=1.3e-09 Score=75.55 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=93.7
Q ss_pred CCCeeEEEeccceEEEEecCcce-eeeeeeccC--CceEEEcCCCCEEEEEe-----cCCeEEEEeccCCCCCCceeEee
Q 026679 25 VNDSFMSGSLDHSVRIWDLRVNA-CQGILRLRG--RPTVAFDQQGLVFAVAM-----EAGAIKLFDSRSYDKGPFDTFLV 96 (235)
Q Consensus 25 ~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~--~~~~~~~~~~~~l~~~~-----~dg~v~i~d~~~~~~~~~~~~~~ 96 (235)
.++.++++..||.+.+++.+.-. ....+.... ....++...++.+.++. .-+..+.|+++..+......
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--- 176 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--- 176 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc---
Confidence 35679999999999999876521 111111111 11133333444444332 23456667766543211111
Q ss_pred cCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEEEEeCCCCcEEEEEcC
Q 026679 97 GGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNIN 174 (235)
Q Consensus 97 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~ 174 (235)
.....|.+++-+|. ...+++|+.||.+-+||.+....... .+..|+.++..+-|+| ++..|+++++||.+.-||..
T Consensus 177 -~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S-~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 177 -KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS-LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred -cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH-HHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 12234888998985 45667788899999999998744332 3456778899999999 68899999999999999975
Q ss_pred C
Q 026679 175 T 175 (235)
Q Consensus 175 ~ 175 (235)
+
T Consensus 255 ~ 255 (319)
T KOG4714|consen 255 T 255 (319)
T ss_pred C
Confidence 3
No 302
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.99 E-value=1.9e-08 Score=71.73 Aligned_cols=195 Identities=12% Similarity=0.258 Sum_probs=122.6
Q ss_pred cceeEEEeecCC--CeeEEEeccceEEEEecCcceee---------------------------eeee------------
Q 026679 15 ERVISLCMSPVN--DSFMSGSLDHSVRIWDLRVNACQ---------------------------GILR------------ 53 (235)
Q Consensus 15 ~~v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~~~~---------------------------~~~~------------ 53 (235)
..|..+.|..++ ..++..+.|++|++|.+...... ..+.
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 457888887654 45777788999999987532100 0000
Q ss_pred ----ccC--CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCC-----cceeEEEEccC-CCeEEEecCC
Q 026679 54 ----LRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT-----AEVCDIKFSND-GKSMLLTTTN 121 (235)
Q Consensus 54 ----~~~--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~-~~~l~~~~~d 121 (235)
.|. ...+.+..+.+.++++ .|-.|.+|++.-... .........|. .-|++..|+|. ...+...+..
T Consensus 166 vyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~-sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk 243 (460)
T COG5170 166 VYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDG-SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK 243 (460)
T ss_pred eccccceeEeeeeeecCchheeeec-cceeeeeccccccCC-ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence 011 1125566666666655 466899999876553 22333333432 45788899995 4566677889
Q ss_pred CcEEEEEcCCCce------eeeeccCC--------CCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC-CceeeeecCCC
Q 026679 122 NNIYVLDAYGGEK------RCGFSLEP--------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNI 186 (235)
Q Consensus 122 ~~i~~~d~~~~~~------~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~ 186 (235)
|.|++-|+|.... +......+ -...|..+.|+++|+++++-+.- ++++||.+. ..++.++..|.
T Consensus 244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHH
Confidence 9999999984321 11111111 12567889999999999887654 799999975 44566664441
Q ss_pred ------------cce---eEEEeecCCCEEEEcc--cceEEee
Q 026679 187 ------------GVV---ACLKWAPRRAMFVAAS--SVLSFWI 212 (235)
Q Consensus 187 ------------~~v---~~~~~~~~~~~l~~~~--~~i~iw~ 212 (235)
..| ..+.|+.|...+++|+ +..-+|-
T Consensus 323 ~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 323 DLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 112 3567888888888887 4455554
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.98 E-value=1.1e-08 Score=82.40 Aligned_cols=150 Identities=14% Similarity=0.152 Sum_probs=113.9
Q ss_pred eeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEec---------CCeEEEEeccCCC
Q 026679 17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAME---------AGAIKLFDSRSYD 87 (235)
Q Consensus 17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------dg~v~i~d~~~~~ 87 (235)
|+-|+. +++.+.+|...|+|.+-|.++.+.++++..|...+.+|+-.|+.|++++. |.-|++||++...
T Consensus 180 v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr 257 (1118)
T KOG1275|consen 180 VTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR 257 (1118)
T ss_pred eEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhh
Confidence 444443 47899999999999999999999999999999999999999999999985 5578999999876
Q ss_pred CCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCC-ce-eeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679 88 KGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGG-EK-RCGFSLEPSPNTNTEATFTPDGQYVVSGSG 164 (235)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~-~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (235)
......+. . ...-+.|+|. ...+++++..|...+-|..+. .+ ...+..+.....+..+.++++++.++.|..
T Consensus 258 al~PI~~~----~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~ 332 (1118)
T KOG1275|consen 258 ALSPIQFP----Y-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH 332 (1118)
T ss_pred ccCCcccc----c-CchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecc
Confidence 52222221 1 1234567774 456888899999999993321 11 222333444455899999999999999999
Q ss_pred CCcEEEEEc
Q 026679 165 DGTLHAWNI 173 (235)
Q Consensus 165 dg~i~v~d~ 173 (235)
+|.|.+|.-
T Consensus 333 ~g~v~~wa~ 341 (1118)
T KOG1275|consen 333 EGHVNLWAD 341 (1118)
T ss_pred cCcEeeecC
Confidence 999999983
No 304
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=5.9e-09 Score=75.12 Aligned_cols=140 Identities=11% Similarity=0.173 Sum_probs=101.9
Q ss_pred EEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-----eeeeeccCCCC
Q 026679 70 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-----KRCGFSLEPSP 144 (235)
Q Consensus 70 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~~ 144 (235)
++.+.+-.+-+-|++++-.... ...+.|.++.|...++.++.|+.+|.|..+|++.+. +.+.+ -|.
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl---yh~ 298 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSF------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL---YHD 298 (425)
T ss_pred ecccccceeEEEEeeccccccc------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE---EcC
Confidence 4455566788888887653111 244678899999889999999999999999998752 22222 244
Q ss_pred CcceeeEEeC-CCcEEEEeCCCCcEEEEEcCCCce---eeeecCCCccee--EEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679 145 NTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNE---VACWNGNIGVVA--CLKWAPRRAMFVAAS--SVLSFWIPNPS 216 (235)
Q Consensus 145 ~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~v~--~~~~~~~~~~l~~~~--~~i~iw~~~~~ 216 (235)
..|+++..-. ++++|++.+.+|+|.+||++--++ +.++.+|...-. -+...+....+++++ .-.+||.++.+
T Consensus 299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 6688887766 788999999999999999987666 888888854322 233456666777766 44999999865
Q ss_pred CC
Q 026679 217 SN 218 (235)
Q Consensus 217 ~~ 218 (235)
.+
T Consensus 379 hL 380 (425)
T KOG2695|consen 379 HL 380 (425)
T ss_pred ce
Confidence 44
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.9e-08 Score=74.95 Aligned_cols=209 Identities=13% Similarity=0.164 Sum_probs=141.6
Q ss_pred ccccceeEEEeecCCCeeEEEeccceEEEEecCcc---eeeeeeeccCCc--eEEEcCCCCEEEEEec-CCeEEEEeccC
Q 026679 12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN---ACQGILRLRGRP--TVAFDQQGLVFAVAME-AGAIKLFDSRS 85 (235)
Q Consensus 12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~--~~~~~~~~~~l~~~~~-dg~v~i~d~~~ 85 (235)
-|.+.|+.+... -.+++.+++.||.++.|.-..- +.+..+..|-.. .++.+-++.++.+.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 377888876554 3579999999999999975331 222333334332 3777889999999777 99999999988
Q ss_pred CCCCCceeEeecCCCcceeEEEEcc-CCC-eEEE-ecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679 86 YDKGPFDTFLVGGDTAEVCDIKFSN-DGK-SMLL-TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 162 (235)
Q Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (235)
..... ...+...++.+..+ .+| +.. .+++ .-.++.+.++|-....+...+.-.-|..+|.++.+.|-+..+++.
T Consensus 86 ~Dmin--miKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 86 FDMIN--MIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred cchhh--hcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 66421 12222223333322 222 111 2333 335889999998776654444455677889999999999999999
Q ss_pred CCCCcEEEEEcCC------Cceee---------eecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCCCCCCC
Q 026679 163 SGDGTLHAWNINT------RNEVA---------CWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDEST 224 (235)
Q Consensus 163 ~~dg~i~v~d~~~------~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~~~~~ 224 (235)
...|.|.-|.... .+... .+........++.|+|++..+.+-+ ..|+++++.++++.....+
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 9999999999762 11111 1222345778999999999998887 6699999988876654433
No 306
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.94 E-value=1.1e-06 Score=62.66 Aligned_cols=200 Identities=9% Similarity=0.109 Sum_probs=114.4
Q ss_pred hhcccccceeEEEeecCCC-eeEEEeccceEEEEecCcceeeeeeeccCC---ceEEEcCCCCEEEEEecCCeEEEEecc
Q 026679 9 YFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRGR---PTVAFDQQGLVFAVAMEAGAIKLFDSR 84 (235)
Q Consensus 9 ~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~v~i~d~~ 84 (235)
.+.+-.+.+..++|+|+.+ ++++....+.|...+. +|+.+..+...+. ..+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4455556799999999755 5666667788888886 5778887776552 238888778777766668999999985
Q ss_pred CCCCCC-c---eeEeec---CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC---Cceeeee-----c-cCCCCCcce
Q 026679 85 SYDKGP-F---DTFLVG---GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG---GEKRCGF-----S-LEPSPNTNT 148 (235)
Q Consensus 85 ~~~~~~-~---~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---~~~~~~~-----~-~~~~~~~i~ 148 (235)
...... . ..+.+. .++..+-.++|+|.++.|+++-...-..+|.+.. ....... . .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 432211 1 111211 2445688999999888888887776666776653 1111110 0 111223477
Q ss_pred eeEEeCC-CcEEEEeCCCCcEEEEEcCCCceeeeecCCC---------cceeEEEeecCCCEEEEcc-cceEE
Q 026679 149 EATFTPD-GQYVVSGSGDGTLHAWNINTRNEVACWNGNI---------GVVACLKWAPRRAMFVAAS-SVLSF 210 (235)
Q Consensus 149 ~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~-~~i~i 210 (235)
+++++|. +++++....+..|..+| .+|+.+..+.-.. ...-.|+|.++|++.+++- +-.++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~ 246 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYR 246 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEE
Confidence 8999994 67778888889999999 5777765553221 2578999999998888776 43433
No 307
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.94 E-value=9e-08 Score=73.77 Aligned_cols=190 Identities=19% Similarity=0.287 Sum_probs=121.6
Q ss_pred hhhhcccccceeEEEeecCCCeeEEEe---cc-ceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEe-cCCe--E
Q 026679 7 LRYFKGHKERVISLCMSPVNDSFMSGS---LD-HSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAM-EAGA--I 78 (235)
Q Consensus 7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~---~d-~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~-~dg~--v 78 (235)
.+.+..-...+..-+|+|++..++..+ .. ..+.++++++++............ .+|+|+|+.++.+. .||. |
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 334444445677778999987765442 22 358999999988777777555444 89999998877664 4564 5
Q ss_pred EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CC--cEEEEEcCCCceeeeeccCCCCCcceeeEEeCC
Q 026679 79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 155 (235)
Q Consensus 79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 155 (235)
.++|+..... ..+....+.-..-.|+|||++++..+. .| .|.++++..+.. ..+....... ..-.|+||
T Consensus 265 y~~dl~~~~~-----~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~--~~p~~Spd 336 (425)
T COG0823 265 YLMDLDGKNL-----PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGN--SNPVWSPD 336 (425)
T ss_pred EEEcCCCCcc-----eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCC--cCccCCCC
Confidence 5556665542 112222233336789999999988765 33 477777766654 3334333322 25789999
Q ss_pred CcEEEEeCC-CCc--EEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679 156 GQYVVSGSG-DGT--LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205 (235)
Q Consensus 156 ~~~l~~~~~-dg~--i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 205 (235)
|++|+..+. +|. |.+.|+.++.....+. .......-.|.|++..++..+
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 999987664 344 6677776665433333 333445567888888887766
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=6.8e-08 Score=71.09 Aligned_cols=82 Identities=18% Similarity=0.292 Sum_probs=68.0
Q ss_pred hhhhcccccceeEEEeecCCC-eeEEEeccceEEEEecCcceeeeeeeccCC-ceEEEcCCC-CEEEEEecCCeEEEEec
Q 026679 7 LRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQG-LVFAVAMEAGAIKLFDS 83 (235)
Q Consensus 7 ~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~-~~l~~~~~dg~v~i~d~ 83 (235)
...+.+|...|.+++|+|..+ ++..++.+..|+|.|+++......+..+.. .+++|.-+. +++..|..+|.|.+||+
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 445678889999999999776 788899999999999999988888877753 348888755 57788889999999999
Q ss_pred cCCCC
Q 026679 84 RSYDK 88 (235)
Q Consensus 84 ~~~~~ 88 (235)
+..+.
T Consensus 266 R~~~~ 270 (463)
T KOG1645|consen 266 RQPEG 270 (463)
T ss_pred cCCCc
Confidence 97653
No 309
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=4.1e-09 Score=79.05 Aligned_cols=160 Identities=16% Similarity=0.207 Sum_probs=118.1
Q ss_pred ceeEEEeecCC-CeeEEEeccceEEEEecCccee------eeeeecc--------CCceEEEcCCCCEEEEEecCCeEEE
Q 026679 16 RVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNAC------QGILRLR--------GRPTVAFDQQGLVFAVAMEAGAIKL 80 (235)
Q Consensus 16 ~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~------~~~~~~~--------~~~~~~~~~~~~~l~~~~~dg~v~i 80 (235)
....++..|.. ..+++++.|..+++||.+.-.. +..+..+ .+++++++.++.-++++..|-.|++
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL 362 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL 362 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence 46778888866 4799999999999999764221 1222111 2445899988888888888889999
Q ss_pred EeccCCCCC---------CceeEeecCCC--cceeEEEE-ccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcce
Q 026679 81 FDSRSYDKG---------PFDTFLVGGDT--AEVCDIKF-SNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT 148 (235)
Q Consensus 81 ~d~~~~~~~---------~~~~~~~~~~~--~~v~~~~~-~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~ 148 (235)
|.-..+... +.....+++|. ..|..+-| -|..+++++|+.-|.|.+|+-.+++.+..+....+ -|+
T Consensus 363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~--VVN 440 (559)
T KOG1334|consen 363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH--VVN 440 (559)
T ss_pred eccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc--eEe
Confidence 954432220 11122245554 34666665 57889999999999999999999998887776655 699
Q ss_pred eeEEeCCCcEEEEeCCCCcEEEEEcCCCc
Q 026679 149 EATFTPDGQYVVSGSGDGTLHAWNINTRN 177 (235)
Q Consensus 149 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~ 177 (235)
|+.-+|--..||+++-|..|+||...+.+
T Consensus 441 CLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 441 CLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ccCCCCCCchhhccCCccceeeecCCccc
Confidence 99999999999999999999999875433
No 310
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=2.3e-07 Score=73.90 Aligned_cols=209 Identities=10% Similarity=0.106 Sum_probs=145.9
Q ss_pred hhhhhhhhcccccceeEEEeecCC------------CeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcC---C
Q 026679 3 DNRILRYFKGHKERVISLCMSPVN------------DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ---Q 65 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~------------~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~---~ 65 (235)
+-+.++.+..|...|+.+.|.|.. -+||++...|.|.+||...+..+..+..+..++ ++|-+ +
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDD 123 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCc
Confidence 457788899999999999998731 147788888999999999988888887776655 66655 3
Q ss_pred C-CEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCC-------Cceee
Q 026679 66 G-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYG-------GEKRC 136 (235)
Q Consensus 66 ~-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~-------~~~~~ 136 (235)
. ..|++-.....+.+|+..+++. ..+.........|+.+.| |.+++...+..|.+.+-+.-. ++..+
T Consensus 124 Srd~LlaIh~ss~lvLwntdtG~k----~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q 199 (1062)
T KOG1912|consen 124 SRDVLLAIHGSSTLVLWNTDTGEK----FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ 199 (1062)
T ss_pred chheeEEecCCcEEEEEEccCCce----eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE
Confidence 3 5677777788999999998875 444444556677889998 777888877788777766432 22222
Q ss_pred eeccCCC--------------C---------CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEE
Q 026679 137 GFSLEPS--------------P---------NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLK 193 (235)
Q Consensus 137 ~~~~~~~--------------~---------~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~ 193 (235)
....+.. . .....++|+|.-+-++.......+.++|++-..++....-..+.+.-+.
T Consensus 200 I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~ 279 (1062)
T KOG1912|consen 200 ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVD 279 (1062)
T ss_pred EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeE
Confidence 1111100 0 0112356788766555555677799999998888888876667777788
Q ss_pred eecCCC--EEEEcc--cceEEeeCCC
Q 026679 194 WAPRRA--MFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 194 ~~~~~~--~l~~~~--~~i~iw~~~~ 215 (235)
|-|+++ .|.+.- |.+.+|.-+.
T Consensus 280 vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 280 VLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eccCCCcceEEEEecCCeEEEEEeec
Confidence 888653 454443 8888887644
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=5.3e-07 Score=71.99 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=109.5
Q ss_pred hcccccceeEEEeecC-------------CCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCC-----CCEEE
Q 026679 10 FKGHKERVISLCMSPV-------------NDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQ-----GLVFA 70 (235)
Q Consensus 10 ~~~h~~~v~~~~~~~~-------------~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~-----~~~l~ 70 (235)
|..|.+.|.-..+.-+ |.++++||.||+|.|-.+-+.+....+..+. ..+++++|+ .+.++
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv 133 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFV 133 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhhee
Confidence 3456666665555444 8999999999999999998888777776655 456999996 57899
Q ss_pred EEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC----Cc
Q 026679 71 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP----NT 146 (235)
Q Consensus 71 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~----~~ 146 (235)
+|+..| +.++.-+=.... ....+....++|.++.|. |+++|-+.++| |++||..+++.+..++.+... ..
T Consensus 134 ~GG~ag-lvL~er~wlgnk--~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~f 207 (846)
T KOG2066|consen 134 SGGMAG-LVLSERNWLGNK--DSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELF 207 (846)
T ss_pred ecCcce-EEEehhhhhcCc--cceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccC
Confidence 999988 777764322211 122455667899999996 67788777776 999999988877655443211 12
Q ss_pred ceeeEEeCCCcEEEEeCCCCcEEEEEcC
Q 026679 147 NTEATFTPDGQYVVSGSGDGTLHAWNIN 174 (235)
Q Consensus 147 i~~~~~~~~~~~l~~~~~dg~i~v~d~~ 174 (235)
...+.|.++.+ |+.|=.| +|+|..++
T Consensus 208 pphl~W~~~~~-LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 208 PPHLHWQDEDR-LVIGWGD-SVKICSIK 233 (846)
T ss_pred CCceEecCCCe-EEEecCC-eEEEEEEe
Confidence 33477776654 4455444 68888887
No 312
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.91 E-value=4.6e-07 Score=69.73 Aligned_cols=181 Identities=12% Similarity=0.058 Sum_probs=108.4
Q ss_pred CCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcC--CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcc
Q 026679 25 VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE 102 (235)
Q Consensus 25 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 102 (235)
++..++.++.++.+..+|.++|+.+.......... -+| .+..++.+..+|.+..+|.++++. ..........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~--~~p~v~~~~v~v~~~~g~l~a~d~~tG~~----~W~~~~~~~~ 177 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVL--SPPLVANGLVVVRTNDGRLTALDAATGER----LWTYSRVTPA 177 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceee--cCCEEECCEEEEECCCCeEEEEEcCCCce----eeEEccCCCc
Confidence 45678888889999999999998877665443211 111 345677788899999999988764 2111111111
Q ss_pred e-----eEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC--Ccc---eeeEEeC--CCcEEEEeCCCCcEEE
Q 026679 103 V-----CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP--NTN---TEATFTP--DGQYVVSGSGDGTLHA 170 (235)
Q Consensus 103 v-----~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~i---~~~~~~~--~~~~l~~~~~dg~i~v 170 (235)
. ..... .+..++.+..++.+..+|.++++........... ..+ ..+.-+| .+..+++++.+|.++.
T Consensus 178 ~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a 255 (377)
T TIGR03300 178 LTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAA 255 (377)
T ss_pred eeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEE
Confidence 0 11111 1246778888999999999998876543322110 000 0011111 3557778888999999
Q ss_pred EEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679 171 WNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 171 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~ 217 (235)
||..+++.+-..... ....... .+..++.++ +.+..+|..+++
T Consensus 256 ~d~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 256 LDLRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred EECCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCc
Confidence 999999876555421 1122222 233444433 778888886553
No 313
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.91 E-value=1.7e-08 Score=70.16 Aligned_cols=201 Identities=13% Similarity=0.187 Sum_probs=115.4
Q ss_pred hhccccc-ceeEEEeecCCCeeEEEeccceEEEEecCcceee------------eeeeccC--CceEEEcCCCCEEEEEe
Q 026679 9 YFKGHKE-RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ------------GILRLRG--RPTVAFDQQGLVFAVAM 73 (235)
Q Consensus 9 ~~~~h~~-~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~------------~~~~~~~--~~~~~~~~~~~~l~~~~ 73 (235)
++.+|.+ .|+.+.++. .-.|+++..++.+.......+.+. +.+..+. .+.-+.+-.+..++++.
T Consensus 30 ~i~~~~d~~~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~ 108 (319)
T KOG4714|consen 30 EIMQHADVKLSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGY 108 (319)
T ss_pred hcccccceEEEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecC
Confidence 3344443 255555553 235666666666655554333222 2222222 22233444567799999
Q ss_pred cCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-----CCcEEEEEcCCCceeeeeccCCCCCcce
Q 026679 74 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-----NNNIYVLDAYGGEKRCGFSLEPSPNTNT 148 (235)
Q Consensus 74 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~i~ 148 (235)
.||.+.+++.+.... . ..........-.+.+....++.+.++.- -+..+.|+++..+........ ...+.
T Consensus 109 ~dg~~~v~s~~~~~~--~-~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~--~~~v~ 183 (319)
T KOG4714|consen 109 ADGSLAVFSTDKDLA--L-MSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA--LDAVT 183 (319)
T ss_pred CCceEEEEechHHHh--h-hhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc--cccch
Confidence 999999999876211 0 0000000111112223334444443321 234666666544433222211 23388
Q ss_pred eeEEeCC-CcEEEEeCCCCcEEEEEcCCCce-eeeecCCCcceeEEEeec-CCCEEEEcc--cceEEeeCCC
Q 026679 149 EATFTPD-GQYVVSGSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAP-RRAMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 149 ~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~~i~iw~~~~ 215 (235)
+++-+|. .+.+++|+.||.+-+||.++... ...++.|+.+|+.+.|+| ++..|.+++ |.+-.||-.+
T Consensus 184 ~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 184 ALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 8999995 55678889999999999998743 445678999999999999 566777777 6777777664
No 314
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.88 E-value=7.9e-07 Score=68.43 Aligned_cols=149 Identities=17% Similarity=0.169 Sum_probs=97.6
Q ss_pred CCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeE
Q 026679 26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCD 105 (235)
Q Consensus 26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~ 105 (235)
+..++.++.++.+..+|..+|+.+...............++..+++++.+|.+..+|..+++. ...... ...+.+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~----~W~~~~-~~~~~~ 139 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKE----LWRAKL-SSEVLS 139 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcE----eeeecc-Cceeec
Confidence 567888889999999999999988776655432211122567888889999999999988764 211111 112211
Q ss_pred EEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCc---ceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee
Q 026679 106 IKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT---NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 182 (235)
Q Consensus 106 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 182 (235)
.-.. .+..++.++.++.++.+|.++++.+-.+........ ....... +..++.+..+|.+..+|.++|+.+-..
T Consensus 140 ~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 140 PPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeee
Confidence 1111 345677888899999999999987766554322100 0111221 246778888999999999999876543
No 315
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.88 E-value=1.2e-06 Score=62.82 Aligned_cols=145 Identities=18% Similarity=0.183 Sum_probs=96.4
Q ss_pred cceEEEEecCcceeeeeeeccC-CceEE--EcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccC
Q 026679 35 DHSVRIWDLRVNACQGILRLRG-RPTVA--FDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 111 (235)
Q Consensus 35 d~~i~vwd~~~~~~~~~~~~~~-~~~~~--~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 111 (235)
+|+|..||..+++.+....... ..... ..+++..+++++.++.+..||..+++. ...... ...+.... ..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~--~W~~~~---~~~~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKV--LWRFDL---PGPISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEE--EEEEEC---SSCGGSGE-EEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCE--EEEeec---ccccccee-eec
Confidence 6889999999999888887633 22222 344677788888999999999988764 112222 11111111 224
Q ss_pred CCeEEEecCCCcEEEEEcCCCceeeee-ccCCCC-CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC
Q 026679 112 GKSMLLTTTNNNIYVLDAYGGEKRCGF-SLEPSP-NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN 185 (235)
Q Consensus 112 ~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 185 (235)
+..+++++.++.++.+|..+++..... ...... ..........++..++++..++.|..+|.++|+.+......
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 556777778889999999999988773 322111 11222334445788888888999999999999998777553
No 316
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.85 E-value=1.1e-06 Score=68.18 Aligned_cols=91 Identities=18% Similarity=0.261 Sum_probs=67.7
Q ss_pred EEEEEcCCCcee--eeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEE
Q 026679 124 IYVLDAYGGEKR--CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMF 201 (235)
Q Consensus 124 i~~~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 201 (235)
-.+|++..++.. ..... ..+..+.+++++|+...|+.|+.||.|.+||...+... +....-.++.++|+|+|.++
T Consensus 238 ~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEE
Confidence 345666544322 22222 33466899999999999999999999999998766433 22345678899999999999
Q ss_pred EEcc--cceEEeeCCCCC
Q 026679 202 VAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 202 ~~~~--~~i~iw~~~~~~ 217 (235)
++|+ |.+.+||+.-..
T Consensus 315 ~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 315 VVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEcCCceEEEEEeecCc
Confidence 9998 889999986543
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.84 E-value=1.5e-06 Score=72.46 Aligned_cols=198 Identities=11% Similarity=0.169 Sum_probs=128.9
Q ss_pred ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec-cCCceEEEcCCCCEEEEEecCCeEEEEec----cCCCC
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL-RGRPTVAFDQQGLVFAVAMEAGAIKLFDS----RSYDK 88 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~v~i~d~----~~~~~ 88 (235)
...|.++.|..+...++.+..+|.|.+-|.++......-.. .++.+++|+||++.++..+..+++.+-+- -..+.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 35899999999988888888899999998877654433333 33556999999999999988887766332 10000
Q ss_pred C--------Cce-------eEeecC---------------------CCcceeEEEEccCCCeEEEec-----CCCcEEEE
Q 026679 89 G--------PFD-------TFLVGG---------------------DTAEVCDIKFSNDGKSMLLTT-----TNNNIYVL 127 (235)
Q Consensus 89 ~--------~~~-------~~~~~~---------------------~~~~v~~~~~~~~~~~l~~~~-----~d~~i~~~ 127 (235)
. ... ...+.+ ....=+.+.|--||+++++.. ....|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 0 000 000000 111223588999999988832 23789999
Q ss_pred EcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe---CCCCcEEEEEcCCCceeee----ecCCCcceeEEEeecCCCE
Q 026679 128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG---SGDGTLHAWNINTRNEVAC----WNGNIGVVACLKWAPRRAM 200 (235)
Q Consensus 128 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~dg~i~v~d~~~~~~~~~----~~~~~~~v~~~~~~~~~~~ 200 (235)
|-. +..-..-. ...+.-.+++|-|.|.++++- +.|+.|.+|.- +|..-.. +.....++..++|+.++..
T Consensus 228 drE-g~Lns~se--~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sdi 303 (1265)
T KOG1920|consen 228 DRE-GALNSTSE--PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDI 303 (1265)
T ss_pred ccc-chhhcccC--cccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCCCc
Confidence 965 44332211 222334669999999999875 34667999985 4433222 2333345999999999999
Q ss_pred EEE---cc-cc-eEEeeCCC
Q 026679 201 FVA---AS-SV-LSFWIPNP 215 (235)
Q Consensus 201 l~~---~~-~~-i~iw~~~~ 215 (235)
|+. .. +. +++|-+..
T Consensus 304 LAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 304 LAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred eeeeecccccceEEEEEecC
Confidence 988 33 44 99997654
No 318
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.82 E-value=1.3e-07 Score=74.40 Aligned_cols=119 Identities=13% Similarity=0.215 Sum_probs=89.5
Q ss_pred cccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeee--ccCCce-EEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679 13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR--LRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKG 89 (235)
Q Consensus 13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 89 (235)
|...|.--+++..+++++.|+.-|.+++|+-..+.....-. .+...+ ..++++..++|+|+..|.|.++-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44455555667778999999999999999966554433322 223333 778999999999999999999998875443
Q ss_pred CceeEee--cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC
Q 026679 90 PFDTFLV--GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 131 (235)
Q Consensus 90 ~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 131 (235)
....... ..|...|++++|++++..+++|...|.|.+-.+..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 3322221 23567899999999999999999999999988876
No 319
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.80 E-value=3.1e-08 Score=49.46 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=33.5
Q ss_pred eEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEE
Q 026679 93 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 128 (235)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 128 (235)
...+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 456778999999999999999999999999999997
No 320
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.1e-06 Score=70.71 Aligned_cols=181 Identities=14% Similarity=0.215 Sum_probs=116.8
Q ss_pred hhhhhcccccc-eeEEEeecCCCeeEEEeccc-----eEEEEecCcc------eee---eeee--cc----CCceEEEcC
Q 026679 6 ILRYFKGHKER-VISLCMSPVNDSFMSGSLDH-----SVRIWDLRVN------ACQ---GILR--LR----GRPTVAFDQ 64 (235)
Q Consensus 6 ~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~d~-----~i~vwd~~~~------~~~---~~~~--~~----~~~~~~~~~ 64 (235)
.++.|+++... |..+....+..+|++.+.|+ .++||+++.- .++ ..+. .+ ...+++++.
T Consensus 56 ~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~ 135 (933)
T KOG2114|consen 56 LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE 135 (933)
T ss_pred eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc
Confidence 34677887777 55544443346788877765 4899998632 222 1111 11 123488999
Q ss_pred CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC
Q 026679 65 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP 144 (235)
Q Consensus 65 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 144 (235)
+-+.+++|-.+|.|..+.-.-.........-......+|+.+++..++..++.......|.+|.+.... ........+.
T Consensus 136 ~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G 214 (933)
T KOG2114|consen 136 DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNG 214 (933)
T ss_pred cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-cceeeeccCC
Confidence 999999999999999985322111111222333456799999999988875555556679999998444 3333355566
Q ss_pred CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec-CCCcc
Q 026679 145 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIGV 188 (235)
Q Consensus 145 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~ 188 (235)
....|..+++....+++++.. .+.+||.....+-..+. +|...
T Consensus 215 ~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 215 ISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred ccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCeEE
Confidence 778888898866545555544 59999987666666666 55443
No 321
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.79 E-value=2.6e-06 Score=67.63 Aligned_cols=181 Identities=12% Similarity=0.043 Sum_probs=110.0
Q ss_pred eecCCCeeE-EEeccceEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEEEec-------------------------
Q 026679 22 MSPVNDSFM-SGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAME------------------------- 74 (235)
Q Consensus 22 ~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~------------------------- 74 (235)
++|||+.+. +.-..+.+.+.|.++.+....+...... .++++|+|+++++.+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 345565443 2233466777787777766666655544 3788888888777751
Q ss_pred ---------------CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcCCCce----
Q 026679 75 ---------------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEK---- 134 (235)
Q Consensus 75 ---------------dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~---- 134 (235)
++.|.+.|..+.............-......+.++|||+++++++. +.++.++|+.+.+.
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 2346666655410000012222223456678999999999887765 88999999987553
Q ss_pred --------eeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC----------CceeeeecCCCcce-----eE
Q 026679 135 --------RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT----------RNEVACWNGNIGVV-----AC 191 (235)
Q Consensus 135 --------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~----------~~~~~~~~~~~~~v-----~~ 191 (235)
...... ..+ ....+|+++|+...+-..|..|..|++.. ...+..+..|-.+- .+
T Consensus 360 ~~~~~~~vvaevev--GlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g 436 (635)
T PRK02888 360 KIKPRDAVVAEPEL--GLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMG 436 (635)
T ss_pred cCCccceEEEeecc--CCC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCC
Confidence 222222 112 34578999998888888899999999875 22333333332211 11
Q ss_pred EEeecCCCEEEEcc
Q 026679 192 LKWAPRRAMFVAAS 205 (235)
Q Consensus 192 ~~~~~~~~~l~~~~ 205 (235)
=.-.|+|++|++..
T Consensus 437 ~t~~~dgk~l~~~n 450 (635)
T PRK02888 437 ETKEADGKWLVSLN 450 (635)
T ss_pred CcCCCCCCEEEEcc
Confidence 12357888888775
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.76 E-value=1.6e-07 Score=72.56 Aligned_cols=72 Identities=25% Similarity=0.375 Sum_probs=60.0
Q ss_pred cccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEEEecCCeEEEEeccC
Q 026679 13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAMEAGAIKLFDSRS 85 (235)
Q Consensus 13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~v~i~d~~~ 85 (235)
....|.|++++|+.+.|+.|+.||+|.+||...+..... +..-.+ .++|+|+|..+++|+..|.+.+||+.-
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 567899999999999999999999999999876643333 333333 399999999999999999999999865
No 323
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.72 E-value=6.9e-09 Score=80.52 Aligned_cols=197 Identities=17% Similarity=0.211 Sum_probs=127.3
Q ss_pred ccceeEEEeecCC--CeeEEEeccceEEEEecCcceee--eeeeccCCce--EEEcC-CCCEEEEEe----cCCeEEEEe
Q 026679 14 KERVISLCMSPVN--DSFMSGSLDHSVRIWDLRVNACQ--GILRLRGRPT--VAFDQ-QGLVFAVAM----EAGAIKLFD 82 (235)
Q Consensus 14 ~~~v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~~--~~~~~-~~~~l~~~~----~dg~v~i~d 82 (235)
...+.|+++.-+. ..++.|..+|.|-+-.++...-. ...+.+...| ++|++ |.+.||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4567888876644 46889999999999887655332 2223333333 88888 567777774 367899999
Q ss_pred ccCCCCCCceeEeecC-CCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEEE
Q 026679 83 SRSYDKGPFDTFLVGG-DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVV 160 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 160 (235)
+.+.-..|.....+.. ......+++|..+.+.+++|.....+.++|++....... .... ..+..+..+| .+.+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~-svnT--k~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS-SVNT--KYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh-hhhh--hhcccceecCCCCCcee
Confidence 9876322222222222 334456888988889999999999999999984322111 1111 2356678888 777877
Q ss_pred EeCCCCcEEEEE-cCCCc-eeeeecCCC----cceeEEEeecCCCE-EEEcc---cceEEeeCC
Q 026679 161 SGSGDGTLHAWN-INTRN-EVACWNGNI----GVVACLKWAPRRAM-FVAAS---SVLSFWIPN 214 (235)
Q Consensus 161 ~~~~dg~i~v~d-~~~~~-~~~~~~~~~----~~v~~~~~~~~~~~-l~~~~---~~i~iw~~~ 214 (235)
+-. ||.|.+|| .++-+ ++..+...+ ..+..++|.|...- +++.. ++|+.|++.
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 665 99999999 44333 233332222 24899999996543 33333 678888875
No 324
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.70 E-value=2.6e-06 Score=66.16 Aligned_cols=176 Identities=13% Similarity=0.117 Sum_probs=94.2
Q ss_pred cccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEE-eccCCCCCCc
Q 026679 13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLF-DSRSYDKGPF 91 (235)
Q Consensus 13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~-d~~~~~~~~~ 91 (235)
..-....+.++|+|+.++.+ .||.-.|+.....+... .......+|.+.+ .+|+-...+.|.++ ++.+...
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~---~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~--- 102 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA---FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVV--- 102 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE---EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT---
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc---cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccc---
Confidence 33457889999999988885 56777788743332221 2233458888844 57777778899996 3433221
Q ss_pred eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEE
Q 026679 92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW 171 (235)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~ 171 (235)
...... ..+..+-. |..|...+.+ .|.+||..+++.+..+... +|..+.|+++|++++..+.+ .+.++
T Consensus 103 k~i~~~---~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 103 KSIKLP---FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp -----S---S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred eEEcCC---cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEEeCC-eEEEE
Confidence 111111 12333322 7766666544 8999999999999877654 27889999999999998866 57777
Q ss_pred EcCCC-----------ceeeeecCCCcceeEEEeecCCCEEEEcccceE
Q 026679 172 NINTR-----------NEVACWNGNIGVVACLKWAPRRAMFVAASSVLS 209 (235)
Q Consensus 172 d~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~ 209 (235)
+.... .....+..-...|.+..|..+ -++.+..+.++
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~~lk 218 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSNHLK 218 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TTEEE
T ss_pred EecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCCeEE
Confidence 75322 022333222467888888876 44444444333
No 325
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=4.8e-05 Score=58.58 Aligned_cols=194 Identities=16% Similarity=0.178 Sum_probs=132.3
Q ss_pred eEEEeecCCCe-eEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEec---CCeEEEEeccCCCCCCce
Q 026679 18 ISLCMSPVNDS-FMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAME---AGAIKLFDSRSYDKGPFD 92 (235)
Q Consensus 18 ~~~~~~~~~~~-l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~---dg~v~i~d~~~~~~~~~~ 92 (235)
..++.++.+.. .+....+..|.+.|..+............+. ++++|+++.+.++.. ++.+.+.|..+...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~---- 152 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV---- 152 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE----
Confidence 35677777764 4555556899999988887777776655444 999999988777766 68888888877654
Q ss_pred eEeecCCCcceeEEEEccCCCeEEEec-CCCcEEEEEcCCCceeeeec----cCCCCCcceeeEEeCCCcEEEEeCCC--
Q 026679 93 TFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFS----LEPSPNTNTEATFTPDGQYVVSGSGD-- 165 (235)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~d-- 165 (235)
.........+ ..++++|+|+.++... .++.|.+.|........ -. .... .....+.++|+|.++......
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccC-CCCceEEECCCCCEEEEEeccCC
Confidence 2222222233 7899999999766655 68899999977665542 11 1111 223568999999977655443
Q ss_pred -CcEEEEEcCCCceeeeecCCCc-ceeEEEeecCCCEEEEcc---cceEEeeCCCCCC
Q 026679 166 -GTLHAWNINTRNEVACWNGNIG-VVACLKWAPRRAMFVAAS---SVLSFWIPNPSSN 218 (235)
Q Consensus 166 -g~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~ 218 (235)
+.+...|..++.....-..-.. ....+..+|+|.++.+.. +.+.+.|..+...
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 5899999888776655221112 467789999999988884 5677777665443
No 326
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.63 E-value=3e-06 Score=69.47 Aligned_cols=137 Identities=12% Similarity=0.110 Sum_probs=96.6
Q ss_pred eccceEEEEecCcceeeeeeeccCCc-eEEEcCC-------CCEEEEEecCCeEEEEeccCCCCCCce-eEeecCCCcce
Q 026679 33 SLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQ-------GLVFAVAMEAGAIKLFDSRSYDKGPFD-TFLVGGDTAEV 103 (235)
Q Consensus 33 ~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~-------~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~~~~~~v 103 (235)
.....|+-.|++.|+.+..+..+... +..+.|+ ...-+.|-.+..+..||.+-....... ...........
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34577889999999999999988754 5667664 345677888889999999864311110 11111233457
Q ss_pred eEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679 104 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 173 (235)
Q Consensus 104 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~ 173 (235)
.|++-+.+| +||+|+.+|.|++||- .+.. ....+++-..+|..+..+.||++|++.+.. .|.+++.
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~-~g~~-AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDR-LGKR-AKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeecc-cchh-hhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 778777777 5999999999999994 4432 233344555789999999999999877644 5667775
No 327
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.63 E-value=4.6e-07 Score=71.37 Aligned_cols=153 Identities=13% Similarity=0.138 Sum_probs=105.1
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee--
Q 026679 60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG-- 137 (235)
Q Consensus 60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-- 137 (235)
-+++..+++++.|+..|.+++|+-..+.. ...+..+..+.+.....+++..++|+|+..|.|.++-+....+...
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~---~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEM---RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhh---hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 56778899999999999999999776553 2233333455667778899999999999999999998876433211
Q ss_pred -ecc-CCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCc----eeeeecCCCcceeEEEeecCCCEEEEcccceEEe
Q 026679 138 -FSL-EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN----EVACWNGNIGVVACLKWAPRRAMFVAASSVLSFW 211 (235)
Q Consensus 138 -~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw 211 (235)
... ..|+..|++++|++++..+++|...|.|..-.+.+.. ....+..-.+.|-.+... ++.+|++..-...+.
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~r~~Lc 194 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLTRCILC 194 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhhhhhee
Confidence 111 2256789999999999999999999999988886621 111222234566666654 344454444334445
Q ss_pred eCCCC
Q 026679 212 IPNPS 216 (235)
Q Consensus 212 ~~~~~ 216 (235)
+.+..
T Consensus 195 ~tE~e 199 (726)
T KOG3621|consen 195 QTEAE 199 (726)
T ss_pred ecchh
Confidence 55443
No 328
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=2.3e-06 Score=68.43 Aligned_cols=152 Identities=17% Similarity=0.137 Sum_probs=113.1
Q ss_pred ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCC------------CCEEEEEecCCeEE
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQ------------GLVFAVAMEAGAIK 79 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~------------~~~l~~~~~dg~v~ 79 (235)
...-.++.|+|.| ++|-|+. ..|.+-|..+-+.++.+..|...+ +.|.|. .-+++++...|.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3446778999865 6776665 578899999999999988887544 777652 23577888899999
Q ss_pred EEeccCCCCCCceeEeecCCCcceeEEEEcc---CC-CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-
Q 026679 80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN---DG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP- 154 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~- 154 (235)
+||...... ...+..+..++..++|-+ +. ..|++-.....+.+|+..+|+..-.+.... ....|+.+.|
T Consensus 93 l~d~~~~s~----~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~--~iLs~f~~DPf 166 (1062)
T KOG1912|consen 93 LVDFVLASV----INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH--EILSCFRVDPF 166 (1062)
T ss_pred EEEehhhhh----hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC--cceeeeeeCCC
Confidence 999987654 555667788899999976 34 467777778899999999999886655433 4466788888
Q ss_pred CCcEEEEeCCCCcEEEEEc
Q 026679 155 DGQYVVSGSGDGTLHAWNI 173 (235)
Q Consensus 155 ~~~~l~~~~~dg~i~v~d~ 173 (235)
|.+.+..-+..|.+.+-+.
T Consensus 167 d~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 167 DSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred CcceEEEEccCceEEEEec
Confidence 6677777777777666654
No 329
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.59 E-value=2.9e-05 Score=59.65 Aligned_cols=199 Identities=15% Similarity=0.189 Sum_probs=111.3
Q ss_pred hcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC----------CceEEEc-----CCC---CEEEE
Q 026679 10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG----------RPTVAFD-----QQG---LVFAV 71 (235)
Q Consensus 10 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~----------~~~~~~~-----~~~---~~l~~ 71 (235)
++...++|++++.|. =.++|.|..+|.+.|.|++....+..-.... ..++.|. .|+ -.+++
T Consensus 82 ~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 445578999999984 4699999999999999998887666533222 1124443 233 46889
Q ss_pred EecCCeEEEEeccCCCCCCce---eEeecCCCcceeEEE-EccC-C-------------------CeEEEecCCCcEEEE
Q 026679 72 AMEAGAIKLFDSRSYDKGPFD---TFLVGGDTAEVCDIK-FSND-G-------------------KSMLLTTTNNNIYVL 127 (235)
Q Consensus 72 ~~~dg~v~i~d~~~~~~~~~~---~~~~~~~~~~v~~~~-~~~~-~-------------------~~l~~~~~d~~i~~~ 127 (235)
|...|.+.+|.+.-....... ......+.+++..+. ++.+ | ..++....+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 999999999987521111111 111123445555444 3222 1 124444557789999
Q ss_pred EcCCCceeeeeccCCCCCcceeeEEe-----CCCcEEEEeCCCCcEEEEEcCCCceeeeecCCC----cceeEEEeecCC
Q 026679 128 DAYGGEKRCGFSLEPSPNTNTEATFT-----PDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI----GVVACLKWAPRR 198 (235)
Q Consensus 128 d~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~----~~v~~~~~~~~~ 198 (235)
...+.+...... ........+.+- ..+..|++-..+|.|++|.+...+.+..++.+. ..+....++++|
T Consensus 241 ~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~G 318 (395)
T PF08596_consen 241 KPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNG 318 (395)
T ss_dssp -TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred eCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCC
Confidence 998877665444 222223344452 356778888899999999999999887776432 356677889999
Q ss_pred CEEEEcc-cceEEe
Q 026679 199 AMFVAAS-SVLSFW 211 (235)
Q Consensus 199 ~~l~~~~-~~i~iw 211 (235)
..++-.+ ..+.++
T Consensus 319 di~~~~gpsE~~l~ 332 (395)
T PF08596_consen 319 DIFYWTGPSEIQLF 332 (395)
T ss_dssp -EEEE-SSSEEEEE
T ss_pred CEEEEeCcccEEEE
Confidence 9988877 443333
No 330
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.51 E-value=6.1e-08 Score=75.47 Aligned_cols=159 Identities=16% Similarity=0.201 Sum_probs=102.8
Q ss_pred hcccccceeEEEeec-CCCeeEEEe----ccceEEEEecCcc--eeeee--e---eccCCceEEEcCCCCEEEEEecCCe
Q 026679 10 FKGHKERVISLCMSP-VNDSFMSGS----LDHSVRIWDLRVN--ACQGI--L---RLRGRPTVAFDQQGLVFAVAMEAGA 77 (235)
Q Consensus 10 ~~~h~~~v~~~~~~~-~~~~l~s~~----~d~~i~vwd~~~~--~~~~~--~---~~~~~~~~~~~~~~~~l~~~~~dg~ 77 (235)
..+|..+.++++|++ |.++||+|- .|..+.|||+.++ .+... + ...+..+++|..+.+++.+|.....
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~ 177 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS 177 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccch
Confidence 346778899999998 456777763 3567999999876 22221 1 1223446888888999999999999
Q ss_pred EEEEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEE-cCCCce-eeeecc--CCCCCcceeeEE
Q 026679 78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLD-AYGGEK-RCGFSL--EPSPNTNTEATF 152 (235)
Q Consensus 78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d-~~~~~~-~~~~~~--~~~~~~i~~~~~ 152 (235)
+.++|++.... ....-.+..+..+...| .+++++.-. ||.|.+|| .+.-+. +....- ...+..+..++|
T Consensus 178 ~~ifdlRqs~~-----~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ay 251 (783)
T KOG1008|consen 178 VHIFDLRQSLD-----SVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAY 251 (783)
T ss_pred hhhhhhhhhhh-----hhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEe
Confidence 99999984332 11112234567778888 677766554 99999999 433221 211111 112234788999
Q ss_pred eCCCc-EEEEe-CCCCcEEEEEcC
Q 026679 153 TPDGQ-YVVSG-SGDGTLHAWNIN 174 (235)
Q Consensus 153 ~~~~~-~l~~~-~~dg~i~v~d~~ 174 (235)
+|... .+++. -..++|+.||+.
T Consensus 252 cPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 252 CPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccCCcchhhhhccCcceEEEeccc
Confidence 99432 34444 445789999985
No 331
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.50 E-value=4.9e-05 Score=58.97 Aligned_cols=182 Identities=10% Similarity=-0.008 Sum_probs=105.7
Q ss_pred CCeeEEEeccceEEEEecCcceeeeeeeccCCce---EEEcC--CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCC
Q 026679 26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT---VAFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT 100 (235)
Q Consensus 26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~ 100 (235)
+..++.+..++.+..+|.++|+.+.......... ..-+| .+..++.+..+|.+..+|..+++.... .......
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~--~~~~~~~ 237 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQ--QRISQPT 237 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhhe--eccccCC
Confidence 3456677788999999999998887765432100 00112 234577778889999999887664211 1110000
Q ss_pred --c---ceeEEEEcc--CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679 101 --A---EVCDIKFSN--DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 173 (235)
Q Consensus 101 --~---~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~ 173 (235)
. ....+.-+| .+..+++++.+|.+..+|..+++.+-...... ...+. ..+..++.++.+|.+..+|.
T Consensus 238 ~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~--~~~~~vy~~~~~g~l~ald~ 311 (394)
T PRK11138 238 GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS----VNDFA--VDGGRIYLVDQNDRVYALDT 311 (394)
T ss_pred CccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC----ccCcE--EECCEEEEEcCCCeEEEEEC
Confidence 0 011111122 34567778889999999999998765443321 11222 24567788888999999999
Q ss_pred CCCceeeeecCCC-cceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679 174 NTRNEVACWNGNI-GVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 174 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~ 217 (235)
.+++.+-...... ....+.... ++ .|+.++ |.+.+.|.++++
T Consensus 312 ~tG~~~W~~~~~~~~~~~sp~v~-~g-~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 312 RGGVELWSQSDLLHRLLTAPVLY-NG-YLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred CCCcEEEcccccCCCcccCCEEE-CC-EEEEEeCCCEEEEEECCCCC
Confidence 9988754332111 112222222 33 333343 777777776654
No 332
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.49 E-value=0.00018 Score=53.30 Aligned_cols=198 Identities=14% Similarity=0.155 Sum_probs=116.6
Q ss_pred EEeecCCCeeEEE--eccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCcee-Eee
Q 026679 20 LCMSPVNDSFMSG--SLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT-FLV 96 (235)
Q Consensus 20 ~~~~~~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~ 96 (235)
++++.|+++++.. +--..|.|-|+..++.+..+..++...+--. ....|.+-|.||.+.-..+.......... ..+
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F 178 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVF 178 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEEEEEEEES
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEec-CCCceEEEecCCceEEEEECCCCCEeEeecccc
Confidence 4566677665543 3345677777777777777765543222112 23458888899999988887443322111 111
Q ss_pred cCCCcce-eEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccC----------CCCCcceeeEEeCCCcEEEEeC--
Q 026679 97 GGDTAEV-CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE----------PSPNTNTEATFTPDGQYVVSGS-- 163 (235)
Q Consensus 97 ~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~l~~~~-- 163 (235)
.....++ ..-++...+..++..+.+|.|+-.|+............ -.++.-.-+++++..+.|++--
T Consensus 179 ~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~ 258 (342)
T PF06433_consen 179 DPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ 258 (342)
T ss_dssp STTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE
T ss_pred CCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC
Confidence 1222222 23445555666777889999999998776533221111 0113344578887655554431
Q ss_pred -CCC-------cEEEEEcCCCceeeeecCCCcceeEEEeecCCC-EEEEcc---cceEEeeCCCCCCC
Q 026679 164 -GDG-------TLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS---SVLSFWIPNPSSNS 219 (235)
Q Consensus 164 -~dg-------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~---~~i~iw~~~~~~~~ 219 (235)
.++ .|.++|+.+++.+..+.. ..++.+|+.+.+.+ +|++.+ +.+.+||..+++..
T Consensus 259 g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 259 GGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp --TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred CCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 122 488999999999998873 35788999998765 554432 67999999876543
No 333
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.49 E-value=0.00013 Score=56.70 Aligned_cols=197 Identities=14% Similarity=0.180 Sum_probs=102.9
Q ss_pred hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeee----ccCCc-e----EEEcCCCCEEEEEec
Q 026679 4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR----LRGRP-T----VAFDQQGLVFAVAME 74 (235)
Q Consensus 4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~----~~~~~-~----~~~~~~~~~l~~~~~ 74 (235)
|+++..+.--.+.|.++.|+.+ ..|+....||.++++|+. |+....+. ..... + ..+..+| ++.-..
T Consensus 70 G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~ 145 (410)
T PF04841_consen 70 GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTG 145 (410)
T ss_pred CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC--EEEECC
Confidence 4445554433378899999875 556677789999999985 33311111 01110 1 1112234 333334
Q ss_pred CCeEEEEeccCCCCCCc-eeE-ee-------cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCC
Q 026679 75 AGAIKLFDSRSYDKGPF-DTF-LV-------GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN 145 (235)
Q Consensus 75 dg~v~i~d~~~~~~~~~-~~~-~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 145 (235)
++.+.+.+ +...... ... .. ...........++.+....+....++.+.+.+-...+. .. ..+
T Consensus 146 ~~~~~~v~--n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-----i~-~~~ 217 (410)
T PF04841_consen 146 NNRFYVVN--NIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-----ID-SDG 217 (410)
T ss_pred CCeEEEEe--CccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-----cc-CCC
Confidence 44444332 2211100 000 00 00001000123444455555555556666454332211 11 125
Q ss_pred cceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC-CcceeEEEeecCCCEEEEcccceEEee
Q 026679 146 TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAASSVLSFWI 212 (235)
Q Consensus 146 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~i~iw~ 212 (235)
++..++.||+|+++|.-..+|.+.+.+..-.+....+... ......+.|.-+...++.-...+.+..
T Consensus 218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~l~lvg 285 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSWEDELLLVG 285 (410)
T ss_pred CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEeCCEEEEEC
Confidence 6999999999999999999999999887655555555433 346678888876555444444444443
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.48 E-value=4.3e-06 Score=64.93 Aligned_cols=139 Identities=10% Similarity=0.145 Sum_probs=82.3
Q ss_pred ceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee
Q 026679 58 PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG 137 (235)
Q Consensus 58 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 137 (235)
..+.++|+|+.+++ +.+|.-.++...... ... .+....++|.+.++ +++-...+.|.++.--+.+....
T Consensus 36 ~~ls~npngr~v~V-~g~geY~iyt~~~~r-----~k~----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 36 QSLSHNPNGRFVLV-CGDGEYEIYTALAWR-----NKA----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SEEEE-TTSSEEEE-EETTEEEEEETTTTE-----EEE----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred eeEEECCCCCEEEE-EcCCEEEEEEccCCc-----ccc----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceE
Confidence 34999999999888 567788888733211 111 24556788998554 67777788899974322222223
Q ss_pred eccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCC
Q 026679 138 FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPS 216 (235)
Q Consensus 138 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~ 216 (235)
+.... .+..+-. |.+|+..+.+ .|.+||+.+++.+..+... +|..+.|++++.+++..+ ..+.|++.+..
T Consensus 105 i~~~~---~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 105 IKLPF---SVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp ---SS----EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred EcCCc---ccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence 33321 2333332 7877777655 7999999999999998743 489999999999999888 77888877543
No 335
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.47 E-value=1.8e-05 Score=61.37 Aligned_cols=148 Identities=18% Similarity=0.205 Sum_probs=93.3
Q ss_pred EEEcCCCCEEEEEe---cC-CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CC--cEEEEEcCCC
Q 026679 60 VAFDQQGLVFAVAM---EA-GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NN--NIYVLDAYGG 132 (235)
Q Consensus 60 ~~~~~~~~~l~~~~---~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~ 132 (235)
.+|+|++..++... .. ..+.++|+.++...... .. ...-...+|+|||+.|+.... || .|+++|+..+
T Consensus 198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~--~~---~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 198 PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL--NF---NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred cccCcCCCceEEEEEecCCCceEEEEeccCCccceee--cc---CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 68899887765543 22 45888999887652222 22 233445689999998887654 44 4788888877
Q ss_pred ceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CCc--EEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---c
Q 026679 133 EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGT--LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---S 206 (235)
Q Consensus 133 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~ 206 (235)
+..+... ..+.-..-.|+|||++++..+. .|. |.+++...... ..+......-..-.|+|||.+++..+ |
T Consensus 273 ~~~~Lt~---~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g 348 (425)
T COG0823 273 NLPRLTN---GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGG 348 (425)
T ss_pred cceeccc---CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCC
Confidence 7443222 2222346789999999976654 343 66777655543 34433333333778999999998876 3
Q ss_pred c--eEEeeCCCC
Q 026679 207 V--LSFWIPNPS 216 (235)
Q Consensus 207 ~--i~iw~~~~~ 216 (235)
. +.+.++...
T Consensus 349 ~~~i~~~~~~~~ 360 (425)
T COG0823 349 QWDIDKNDLASG 360 (425)
T ss_pred ceeeEEeccCCC
Confidence 3 555555433
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.47 E-value=5.3e-05 Score=60.45 Aligned_cols=185 Identities=15% Similarity=0.084 Sum_probs=108.2
Q ss_pred eEEEeccceEEEEecCcceeeeeeeccCC--------------------------------ceEEEc---CCCCEEEEEe
Q 026679 29 FMSGSLDHSVRIWDLRVNACQGILRLRGR--------------------------------PTVAFD---QQGLVFAVAM 73 (235)
Q Consensus 29 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--------------------------------~~~~~~---~~~~~l~~~~ 73 (235)
|.||+..|.++|+-+.+++.+..+..-.. +.+.+. .||++++.-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 78999999999999887776655432100 001111 1566777665
Q ss_pred c-CCeEEEEeccCCCCCCceeEe-----------ecCCCccee-----EEEEccCCCeEEEec-CCCcEEEEEcCCCcee
Q 026679 74 E-AGAIKLFDSRSYDKGPFDTFL-----------VGGDTAEVC-----DIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKR 135 (235)
Q Consensus 74 ~-dg~v~i~d~~~~~~~~~~~~~-----------~~~~~~~v~-----~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~ 135 (235)
. +..+...++...+........ ...+...|. .+=++|||+.+...+ ..+.+.+.|..+.+..
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~ 228 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA 228 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence 4 455555555544332111100 001111121 122345665443322 2456788888877766
Q ss_pred eeeccCCCCCcceeeEEeCCCcEEEEeCC----------------------------------------CCcEEEEEcCC
Q 026679 136 CGFSLEPSPNTNTEATFTPDGQYVVSGSG----------------------------------------DGTLHAWNINT 175 (235)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------------------------------------dg~i~v~d~~~ 175 (235)
........ ...+.++|+|+++++.+. ++.|.+.|.++
T Consensus 229 ~qV~Vdgn---pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t 305 (635)
T PRK02888 229 WQVMVDGN---LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRK 305 (635)
T ss_pred EEEEeCCC---cccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCc
Confidence 66555443 345788888888877651 23467777666
Q ss_pred -----CceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCC
Q 026679 176 -----RNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSS 217 (235)
Q Consensus 176 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~ 217 (235)
.+.+..+. -......+.++|||+++++++ .++.|+|+...+
T Consensus 306 ~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 306 AANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred cccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 23333333 345678999999999999987 779999997644
No 337
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.46 E-value=9.2e-05 Score=57.44 Aligned_cols=173 Identities=18% Similarity=0.120 Sum_probs=103.0
Q ss_pred CeeEEEeccceEEEEecCcceeeeeeeccCCc---------eEEEcC--CCCEEEEEecCCeEEEEeccCCCCCCceeEe
Q 026679 27 DSFMSGSLDHSVRIWDLRVNACQGILRLRGRP---------TVAFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL 95 (235)
Q Consensus 27 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---------~~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 95 (235)
..++.++.++.+...|.++++.+......... .+..+| .+..+++++.+|.+..+|..+++. ...
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~----~W~ 281 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI----VWK 281 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE----EEe
Confidence 35666777888998998888766554321100 011122 355677778899999999988764 111
Q ss_pred ecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC
Q 026679 96 VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 175 (235)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 175 (235)
... .....+. ..+..++.++.+|.+..+|..+++.+-....... ........ .+..|+.++.+|.++++|..+
T Consensus 282 ~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 282 REY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH-RLLTAPVL--YNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred ecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC-CcccCCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 110 1111122 2466788888999999999999876543322111 11122222 355778889999999999999
Q ss_pred CceeeeecCCCcceeE-EEeecCCCEEEEcc--cceEEee
Q 026679 176 RNEVACWNGNIGVVAC-LKWAPRRAMFVAAS--SVLSFWI 212 (235)
Q Consensus 176 ~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~--~~i~iw~ 212 (235)
|+.+...+.....+.+ ..+ .+++ |+.++ |.+..++
T Consensus 355 G~~~~~~~~~~~~~~s~P~~-~~~~-l~v~t~~G~l~~~~ 392 (394)
T PRK11138 355 GRFVAQQKVDSSGFLSEPVV-ADDK-LLIQARDGTVYAIT 392 (394)
T ss_pred CCEEEEEEcCCCcceeCCEE-ECCE-EEEEeCCceEEEEe
Confidence 9988776543332322 222 2444 44443 6666554
No 338
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.44 E-value=4.2e-05 Score=58.39 Aligned_cols=195 Identities=15% Similarity=0.160 Sum_probs=108.0
Q ss_pred ecCCCeeEEE---------eccceEEEEecCcceeeeeeec-cCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCce
Q 026679 23 SPVNDSFMSG---------SLDHSVRIWDLRVNACQGILRL-RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD 92 (235)
Q Consensus 23 ~~~~~~l~s~---------~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 92 (235)
|||+++++.. +..+.+.++|+++++....... .......|+|+|+.++... ++.|.+++..++.. .
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~---~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE---T 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE---E
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCe---E
Confidence 5777776653 2346789999999876665554 3344599999999988885 57899998765432 1
Q ss_pred eEeecCC----------------CcceeEEEEccCCCeEEEecCCC----------------------------------
Q 026679 93 TFLVGGD----------------TAEVCDIKFSNDGKSMLLTTTNN---------------------------------- 122 (235)
Q Consensus 93 ~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~d~---------------------------------- 122 (235)
.....+. -..-..+-|+||+++|+....|.
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np 156 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNP 156 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCC
Confidence 1111110 12235688999999988754321
Q ss_pred --cEEEEEcCCCceeeeecc---CCCCCcceeeEEeCCCcEEEEe--CCC---CcEEEEEcCCCceeeeecC-CCc---c
Q 026679 123 --NIYVLDAYGGEKRCGFSL---EPSPNTNTEATFTPDGQYVVSG--SGD---GTLHAWNINTRNEVACWNG-NIG---V 188 (235)
Q Consensus 123 --~i~~~d~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~--~~d---g~i~v~d~~~~~~~~~~~~-~~~---~ 188 (235)
.+.++|+.+++....-.. ......+..+.|.++++.|+.. ..+ -.+.++|..++........ ..+ .
T Consensus 157 ~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~ 236 (353)
T PF00930_consen 157 RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV 236 (353)
T ss_dssp EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence 145556655543211111 1233557789999998844332 222 2366778877655333221 112 2
Q ss_pred eeEEEee-cCCCEEEEcc-----cceEEeeCCCCCCCCC
Q 026679 189 VACLKWA-PRRAMFVAAS-----SVLSFWIPNPSSNSTD 221 (235)
Q Consensus 189 v~~~~~~-~~~~~l~~~~-----~~i~iw~~~~~~~~~~ 221 (235)
-....|. +++..++..+ ..|.+++.+++....+
T Consensus 237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~l 275 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQL 275 (353)
T ss_dssp SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEES
T ss_pred ecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecc
Confidence 2345554 6666555543 3366666666543333
No 339
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=7.1e-07 Score=72.06 Aligned_cols=107 Identities=10% Similarity=0.187 Sum_probs=87.7
Q ss_pred eEEEEccCCCeEEEecC----CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCcee
Q 026679 104 CDIKFSNDGKSMLLTTT----NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 179 (235)
Q Consensus 104 ~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~ 179 (235)
+-..|+|...++++++- .|.|.+|- .+|++......+-| +++++|+|..-.|+.|-+-|.+.+|...+.+.-
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 44579998888887753 67888885 56765544444433 678999999888999999999999998877766
Q ss_pred eeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679 180 ACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 214 (235)
Q Consensus 180 ~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~ 214 (235)
.....|..+|..+.|+|+|..++++. |.+.+|.++
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 66678999999999999999999998 889999886
No 340
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.42 E-value=0.00011 Score=62.00 Aligned_cols=163 Identities=17% Similarity=0.245 Sum_probs=108.3
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEc----CCCcee
Q 026679 60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA----YGGEKR 135 (235)
Q Consensus 60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~----~~~~~~ 135 (235)
+.|..+.+.++.+...|.|.+-|..+... -....-...|.+++|+||++.++..+..+++.+.+- -..+.+
T Consensus 74 ~~fl~d~~~i~v~~~~G~iilvd~et~~~-----eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 74 VQFLADTNSICVITALGDIILVDPETLEL-----EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred EEEecccceEEEEecCCcEEEEcccccce-----eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 67777888999999999999998877542 233345578999999999999999988888766542 000100
Q ss_pred -------------------eeeccCC-------------------CCCcceeeEEeCCCcEEEEe-----CCCCcEEEEE
Q 026679 136 -------------------CGFSLEP-------------------SPNTNTEATFTPDGQYVVSG-----SGDGTLHAWN 172 (235)
Q Consensus 136 -------------------~~~~~~~-------------------~~~~i~~~~~~~~~~~l~~~-----~~dg~i~v~d 172 (235)
..+.... ....-+.+.|--||+++++. .....|+|||
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d 228 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD 228 (1265)
T ss_pred ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence 0111000 00112348999999999873 3337899999
Q ss_pred cCCCceeeeecCCCcceeEEEeecCCCEEEEcc-----cceEEeeCCCCCCCCCCCCCCCC
Q 026679 173 INTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNSTDESTDPQA 228 (235)
Q Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~iw~~~~~~~~~~~~~~~~~ 228 (235)
.. |..-..-....+.-.+++|-|.|..+++-. ++|.++.-++-.-..+.-..|..
T Consensus 229 rE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d 288 (1265)
T KOG1920|consen 229 RE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD 288 (1265)
T ss_pred cc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccc
Confidence 75 543333233334457899999999998874 55999988776555444444433
No 341
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.40 E-value=7e-08 Score=77.99 Aligned_cols=186 Identities=15% Similarity=0.106 Sum_probs=120.7
Q ss_pred chhhhhhhhcccccceeEEEeecCCCeeEEEec-cc-eEEEEecCc-ceeeeeeeccCCceEEEcCCCCEEEEEecCCeE
Q 026679 2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSL-DH-SVRIWDLRV-NACQGILRLRGRPTVAFDQQGLVFAVAMEAGAI 78 (235)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~-~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v 78 (235)
.+|.......+|..+|+-+.-+.+|..+++.+. .. -..+|++.. +...+.+. +..++.|+.....-+.|......
T Consensus 1131 ~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~--ed~~vkFsn~~q~r~~gt~~d~a 1208 (1516)
T KOG1832|consen 1131 SSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD--EDKAVKFSNSLQFRALGTEADDA 1208 (1516)
T ss_pred cCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc--ccceeehhhhHHHHHhcccccce
Confidence 356667778899999999999999987665543 22 466899854 33333332 34567777765555566666789
Q ss_pred EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679 79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 158 (235)
Q Consensus 79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (235)
.+||+++...-.............-+...|+|+..+++ .|| .+||++..+.++.|.--.. -..-.|+|.|..
T Consensus 1209 ~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~---~~~G~FHP~g~e 1280 (1516)
T KOG1832|consen 1209 LLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTD---YGGGGFHPSGNE 1280 (1516)
T ss_pred EEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhee---cccccccCCCce
Confidence 99999986642111111111222336788999887665 344 5799998877665532211 123479999999
Q ss_pred EEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEc
Q 026679 159 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA 204 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 204 (235)
++.-+ .|||+++.+.++....-. -..+.|+..|..+...
T Consensus 1281 VIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1281 VIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred EEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCccchhhh
Confidence 98876 489999998887765432 2456677766655443
No 342
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=4.7e-06 Score=67.57 Aligned_cols=108 Identities=15% Similarity=0.206 Sum_probs=84.7
Q ss_pred eEEEeecCCCeeEEEec----cceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCce
Q 026679 18 ISLCMSPVNDSFMSGSL----DHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD 92 (235)
Q Consensus 18 ~~~~~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 92 (235)
+-..|+|...+|+.++. .|.|.||- ++|++......+- ..+++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~---- 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET---- 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee----
Confidence 34589999999887763 57888884 5666544332222 33499999999999999999999999877553
Q ss_pred eEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcC
Q 026679 93 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 130 (235)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 130 (235)
......|+.++..+.|+|+|..++++..-|.+.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 44456788999999999999999999999999999764
No 343
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00034 Score=54.00 Aligned_cols=180 Identities=17% Similarity=0.190 Sum_probs=120.8
Q ss_pred ceeEEEeecCCCeeEEEec---cceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEe-cCCeEEEEeccCCCCCC
Q 026679 16 RVISLCMSPVNDSFMSGSL---DHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGP 90 (235)
Q Consensus 16 ~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~ 90 (235)
.-..++++|+++.+..+.. ++++.+.|..+++..........+. ++++|+|+.++... .++.+.++|........
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~ 196 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR 196 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec
Confidence 3457889999877766654 6889999988888887765544344 99999999766665 78899999976654311
Q ss_pred ceeEeecCCCcceeEEEEccCCCeEEEecCC---CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CC
Q 026679 91 FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG 166 (235)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg 166 (235)
...............+.++|+|.++.+.... +.+...|..++.....-...... ....+..+|+|+++.+... .+
T Consensus 197 ~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~ 275 (381)
T COG3391 197 GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGG 275 (381)
T ss_pred cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCC
Confidence 0000011122334568899999977666554 58999999888776542222222 3566899999999988744 58
Q ss_pred cEEEEEcCCCceeeeecCCC---cceeEEEeec
Q 026679 167 TLHAWNINTRNEVACWNGNI---GVVACLKWAP 196 (235)
Q Consensus 167 ~i~v~d~~~~~~~~~~~~~~---~~v~~~~~~~ 196 (235)
.+.+.|..+........... ..+..+++.+
T Consensus 276 ~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 276 TVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred eEEEEeCCCCceeeeecccccccccceecccee
Confidence 89999988877766554322 2345555554
No 344
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.39 E-value=0.00029 Score=50.51 Aligned_cols=199 Identities=11% Similarity=0.112 Sum_probs=125.1
Q ss_pred EEEeecCCC-eeEEEeccce-EEEEecCcceeeeeeeccCCce----EEEcCCCCEEEEEec-----CCeEEEEeccCCC
Q 026679 19 SLCMSPVND-SFMSGSLDHS-VRIWDLRVNACQGILRLRGRPT----VAFDQQGLVFAVAME-----AGAIKLFDSRSYD 87 (235)
Q Consensus 19 ~~~~~~~~~-~l~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~-----dg~v~i~d~~~~~ 87 (235)
.++|+|... -++-+-.-|+ ..++|....+...++......- -.|+|||.+|...-. .|.|-+||.+..-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 456666432 3444444443 4577777776666665544332 579999999988754 3789999998533
Q ss_pred CCCceeEeecCCCcceeEEEEccCCCeEEEecC------------------CCcEEEEEcCCCceeeeeccC--CCCCcc
Q 026679 88 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT------------------NNNIYVLDAYGGEKRCGFSLE--PSPNTN 147 (235)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~~~d~~~~~~~~~~~~~--~~~~~i 147 (235)
. ..-.+..|.-....+.|.+||+.++.+.. .-++.+.|..+++.+.+..+. .+...+
T Consensus 152 q---rvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 152 Q---RVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred c---eecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 2 23334445555667889999998887643 124677787788877766665 444668
Q ss_pred eeeEEeCCCcEEEEeCCCCc-----EEEEEcCCCceeeeecC-------CCcceeEEEeecCCCEEEEcc---cceEEee
Q 026679 148 TEATFTPDGQYVVSGSGDGT-----LHAWNINTRNEVACWNG-------NIGVVACLKWAPRRAMFVAAS---SVLSFWI 212 (235)
Q Consensus 148 ~~~~~~~~~~~l~~~~~dg~-----i~v~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~---~~i~iw~ 212 (235)
..++..+||..++.+-..|. -.+=-...++.+.-+.. ....|-+++.+.+..+++..+ +...+||
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence 88899888887665533221 11112223444433321 234577888887777777766 5589999
Q ss_pred CCCCCCCC
Q 026679 213 PNPSSNST 220 (235)
Q Consensus 213 ~~~~~~~~ 220 (235)
..++.+..
T Consensus 309 a~tG~vv~ 316 (366)
T COG3490 309 AATGAVVS 316 (366)
T ss_pred cCCCcEEe
Confidence 98876543
No 345
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.39 E-value=3.1e-07 Score=45.19 Aligned_cols=39 Identities=33% Similarity=0.632 Sum_probs=34.5
Q ss_pred hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEe
Q 026679 4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWD 42 (235)
Q Consensus 4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 42 (235)
++++..+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667788999999999999989999999999999996
No 346
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.35 E-value=0.00039 Score=50.11 Aligned_cols=201 Identities=9% Similarity=0.100 Sum_probs=130.8
Q ss_pred hcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC---ceEEEcCCCCEEEEEecCCeEEEEeccCC
Q 026679 10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR---PTVAFDQQGLVFAVAMEAGAIKLFDSRSY 86 (235)
Q Consensus 10 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 86 (235)
+.|-...|.++.|+|+.+.|++......-.|+=..+|+.+.++..... ..+.+..++.+.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 344456699999999999888888888777887788999988876553 34888888888888888888888877654
Q ss_pred CCC-Cc--eeEeec--CC-CcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-eeeeeccCCC-------CCcceeeEE
Q 026679 87 DKG-PF--DTFLVG--GD-TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPS-------PNTNTEATF 152 (235)
Q Consensus 87 ~~~-~~--~~~~~~--~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~-------~~~i~~~~~ 152 (235)
... .. ....+. .+ +...-.++|.|....|+.+=+..-+.+|...... .........+ -..+.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 210 00 012221 12 4567789999988888888887777777765332 1110000000 134667888
Q ss_pred eC-CCcEEEEeCCCCcEEEEEcCCCceeeeecCC---------CcceeEEEeecCCCEEEEcc-cceEEe
Q 026679 153 TP-DGQYVVSGSGDGTLHAWNINTRNEVACWNGN---------IGVVACLKWAPRRAMFVAAS-SVLSFW 211 (235)
Q Consensus 153 ~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~-~~i~iw 211 (235)
++ .+.+|+.+.+++.+.-.|. .|+.+..+.-+ -.....++..++|.+.+++- +-.+.+
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnlfy~F 309 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNLFYRF 309 (316)
T ss_pred cCCCCcEEEEecCCceEEEEec-CCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCcceec
Confidence 87 5667778888888888886 45544443211 12345778888877666654 444433
No 347
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=4.8e-06 Score=65.10 Aligned_cols=93 Identities=12% Similarity=0.205 Sum_probs=75.3
Q ss_pred cceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcce-eeEEeCCCcEEEEeCCCCcEEEEEcCCCcee
Q 026679 101 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT-EATFTPDGQYVVSGSGDGTLHAWNINTRNEV 179 (235)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~ 179 (235)
..+.-+.|+|.-..+|++..+|.|.+..+. .+.+..+..++.+ ++ +++|.|||++|++|-.||+|++-|..++..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~--v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGEN--VTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCc--cceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 457788999999999999999999999887 5656566555443 44 9999999999999999999999999998887
Q ss_pred eeec-CCCcceeEEEeec
Q 026679 180 ACWN-GNIGVVACLKWAP 196 (235)
Q Consensus 180 ~~~~-~~~~~v~~~~~~~ 196 (235)
.... .....|.++-|.|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 6632 2345788888864
No 348
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.31 E-value=0.00085 Score=52.52 Aligned_cols=195 Identities=13% Similarity=0.100 Sum_probs=107.7
Q ss_pred ceeEEEeecCCCeeEEE-ecc----ceEEEEecCcceeeeee-eccCCceEEEcCCCCEEEEEecCC-----------eE
Q 026679 16 RVISLCMSPVNDSFMSG-SLD----HSVRIWDLRVNACQGIL-RLRGRPTVAFDQQGLVFAVAMEAG-----------AI 78 (235)
Q Consensus 16 ~v~~~~~~~~~~~l~s~-~~d----~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg-----------~v 78 (235)
.+....++|+|+++|.+ +.. ..++++|+++++.+... .......+.|.++++.|+....+. .|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 34467899999987754 333 35999999999765532 333333399999988877665332 36
Q ss_pred EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC---C-CcEEEEEcCCC----ceeeeeccCCCCCcceee
Q 026679 79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---N-NNIYVLDAYGG----EKRCGFSLEPSPNTNTEA 150 (235)
Q Consensus 79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-~~i~~~d~~~~----~~~~~~~~~~~~~~i~~~ 150 (235)
..|.+.+........+...........+..++|+++++.... + ..+++.|+..+ .....+.... .+....+
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~-~~~~~~v 283 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE-DGVEYYV 283 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS-SS-EEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC-CceEEEE
Confidence 777776654322222222222222567889999998876433 3 45888888775 1222222211 1112223
Q ss_pred EEeCCCcEEEEeC---CCCcEEEEEcCCCce---eeeecCCCc--ceeEEEeecCCCEEEEcc-----cceEEeeCC
Q 026679 151 TFTPDGQYVVSGS---GDGTLHAWNINTRNE---VACWNGNIG--VVACLKWAPRRAMFVAAS-----SVLSFWIPN 214 (235)
Q Consensus 151 ~~~~~~~~l~~~~---~dg~i~v~d~~~~~~---~~~~~~~~~--~v~~~~~~~~~~~l~~~~-----~~i~iw~~~ 214 (235)
... .+.+++... ..+.|...++.+... ...+..+.. .+..+. ..+.+|+... ..|+++++.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEEEEEEEETTEEEEEEEETT
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEEEEEEEECCccEEEEEECC
Confidence 333 444544443 246677778776653 224444544 344444 4455555543 458999988
No 349
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.31 E-value=4.1e-05 Score=63.11 Aligned_cols=133 Identities=15% Similarity=0.148 Sum_probs=88.6
Q ss_pred cCCeEEEEeccCCCCCCceeEeecCCCc-ceeEEEEccC-------CCeEEEecCCCcEEEEEcCCCc-eeeeeccC--C
Q 026679 74 EAGAIKLFDSRSYDKGPFDTFLVGGDTA-EVCDIKFSND-------GKSMLLTTTNNNIYVLDAYGGE-KRCGFSLE--P 142 (235)
Q Consensus 74 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-------~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~--~ 142 (235)
....++-.|++.++. ......+.. +|.. +.|+ ....+.|-.+..+..||.|-.. .+..-..+ .
T Consensus 502 ~~~~ly~mDLe~GKV----V~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~ 575 (794)
T PF08553_consen 502 NPNKLYKMDLERGKV----VEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS 575 (794)
T ss_pred CCCceEEEecCCCcE----EEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccc
Confidence 456788888888764 333333332 2443 3342 3346677888899999998643 11111111 1
Q ss_pred CCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeC
Q 026679 143 SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIP 213 (235)
Q Consensus 143 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~ 213 (235)
.....+|++-+.+| +||+|+.+|.|++||--..+....+.+-..+|.+|..+.||++|++.+ ..+.+++.
T Consensus 576 ~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred cCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 22446777777666 789999999999999543333445567778999999999999999888 56888876
No 350
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.27 E-value=0.00087 Score=51.25 Aligned_cols=187 Identities=17% Similarity=0.164 Sum_probs=101.7
Q ss_pred ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeecc-------------------CCceEEEcCCCCEEEEEec
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR-------------------GRPTVAFDQQGLVFAVAME 74 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~~~ 74 (235)
...+....|+|+|+.++-.. ++.|.+++..++...+..... ....+.|+||++.|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788899999999988775 578999998776544332211 1234889999999887643
Q ss_pred C-Ce-----------------------------------EEEEeccCCCCCCceeE-eecCCCcceeEEEEccCCCeEEE
Q 026679 75 A-GA-----------------------------------IKLFDSRSYDKGPFDTF-LVGGDTAEVCDIKFSNDGKSMLL 117 (235)
Q Consensus 75 d-g~-----------------------------------v~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~ 117 (235)
| .. +.++|+.+++....... ........+..+.|.++++.|+.
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 2 22 22334433322100000 01123456778999999884444
Q ss_pred ecC-----CCcEEEEEcCCCceeeeeccCCCCCcc---eeeEEe-CCC-cEEEEeCCCCc--EEEEEcCCCceeeeecCC
Q 026679 118 TTT-----NNNIYVLDAYGGEKRCGFSLEPSPNTN---TEATFT-PDG-QYVVSGSGDGT--LHAWNINTRNEVACWNGN 185 (235)
Q Consensus 118 ~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~i---~~~~~~-~~~-~~l~~~~~dg~--i~v~d~~~~~~~~~~~~~ 185 (235)
.-. ...+.++|..++......... ....+ ....|. +++ .+|.....+|. |++++...+. ...+...
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G 278 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSG 278 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-S
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccC
Confidence 332 223777888776554333221 11222 245554 554 44545556665 5555654454 3345444
Q ss_pred CcceeE-EEeecCCCEEEE
Q 026679 186 IGVVAC-LKWAPRRAMFVA 203 (235)
Q Consensus 186 ~~~v~~-~~~~~~~~~l~~ 203 (235)
.-.|.. +.|++++..|..
T Consensus 279 ~~~V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 279 DWEVTSILGWDEDNNRIYF 297 (353)
T ss_dssp SS-EEEEEEEECTSSEEEE
T ss_pred ceeecccceEcCCCCEEEE
Confidence 456644 678888776543
No 351
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.26 E-value=0.00022 Score=43.76 Aligned_cols=99 Identities=18% Similarity=0.317 Sum_probs=62.7
Q ss_pred eeEEEeec---CC-CeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEecCCeEEEEeccCCCCCCc
Q 026679 17 VISLCMSP---VN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF 91 (235)
Q Consensus 17 v~~~~~~~---~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 91 (235)
|++|++.. +| +.|+.|+.|..||+|+- .+.+..+....... +.-.. +..|+.+..+|+|-+|+-.....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~-~~~F~Y~l~NGTVGvY~~~~RlW--- 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLG-GGRFAYALANGTVGVYDRSQRLW--- 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcC-CCEEEEEecCCEEEEEeCcceee---
Confidence 66777765 33 57999999999999973 35555555444333 33333 36799999999999998643221
Q ss_pred eeEeecCCCcceeEEEEcc-C--C-CeEEEecCCCcEE
Q 026679 92 DTFLVGGDTAEVCDIKFSN-D--G-KSMLLTTTNNNIY 125 (235)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~-~--~-~~l~~~~~d~~i~ 125 (235)
..+ . ...+.++++.. + | ..|++|-.+|.|-
T Consensus 76 -RiK--S-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 -RIK--S-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eec--c-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 222 2 22355555433 3 2 2588888888764
No 352
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=7.4e-05 Score=55.65 Aligned_cols=158 Identities=13% Similarity=0.079 Sum_probs=88.9
Q ss_pred EEEEecCcceeeeeeeccCCc--eEEEcCCCC-EEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCC-C
Q 026679 38 VRIWDLRVNACQGILRLRGRP--TVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-K 113 (235)
Q Consensus 38 i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~ 113 (235)
+++.+..+.+....+..++.. .++|+|..+ ++..++.+..|++.|+++... ......+ ..+.+++|.-|. .
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~----vssy~a~-~~~wSC~wDlde~h 249 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV----VSSYIAY-NQIWSCCWDLDERH 249 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee----eeheecc-CCceeeeeccCCcc
Confidence 333333333333334444433 389999776 788999999999999998654 3333333 789999998765 4
Q ss_pred eEEEecCCCcEEEEEcCCCcee-eeeccCCCCCcceeeE------EeCCCcEEEEeCCCCcEEEEEcCC--Cceeeeec-
Q 026679 114 SMLLTTTNNNIYVLDAYGGEKR-CGFSLEPSPNTNTEAT------FTPDGQYVVSGSGDGTLHAWNINT--RNEVACWN- 183 (235)
Q Consensus 114 ~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~------~~~~~~~l~~~~~dg~i~v~d~~~--~~~~~~~~- 183 (235)
++.+|..+|.|.+||++..+.. ..+.......+|..++ ..+.|.+|+....+ +..|++.- +.....+.
T Consensus 250 ~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred eeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc
Confidence 5677778999999999875432 2222212223343333 23345555554443 45565531 22222111
Q ss_pred CCCcceeEEEeecCCCEEE
Q 026679 184 GNIGVVACLKWAPRRAMFV 202 (235)
Q Consensus 184 ~~~~~v~~~~~~~~~~~l~ 202 (235)
...+...+++..+-.+.++
T Consensus 328 e~pG~cismqy~~~snh~l 346 (463)
T KOG1645|consen 328 EPPGICISMQYHGVSNHLL 346 (463)
T ss_pred CCCcceeeeeecCccceEE
Confidence 1244555666655434333
No 353
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.23 E-value=0.00041 Score=56.27 Aligned_cols=172 Identities=13% Similarity=0.161 Sum_probs=97.1
Q ss_pred cceeEEEeecCCCeeEEEe------ccc--eEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecC-----------
Q 026679 15 ERVISLCMSPVNDSFMSGS------LDH--SVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEA----------- 75 (235)
Q Consensus 15 ~~v~~~~~~~~~~~l~s~~------~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------- 75 (235)
..+...+++|+|+.++... .|. .|.+++. .+...............|+|+|..+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 4678889999998876654 243 4555554 2333333344444558999998877776532
Q ss_pred -CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEE---EEcCCCceeee---eccCC-CCCcc
Q 026679 76 -GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV---LDAYGGEKRCG---FSLEP-SPNTN 147 (235)
Q Consensus 76 -g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~---~d~~~~~~~~~---~~~~~-~~~~i 147 (235)
+.+.+.++..+.. .. .....|..+.|+|||..++... ++.|++ -....+. ... ..+.. ....+
T Consensus 429 ~gql~~~~vd~ge~----~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 429 TGQLARTPVDASAV----AS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTA 499 (591)
T ss_pred CceEEEEeccCchh----hh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCcc
Confidence 2222223332221 00 2245799999999999988866 467777 4433443 111 11111 22335
Q ss_pred eeeEEeCCCcEEEEeCCCCcEEEEEcC-CCceeeeecC--CCcceeEEEeecC
Q 026679 148 TEATFTPDGQYVVSGSGDGTLHAWNIN-TRNEVACWNG--NIGVVACLKWAPR 197 (235)
Q Consensus 148 ~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~--~~~~v~~~~~~~~ 197 (235)
..+.|.+++.++ ++..++.-.+|.+. .|.....+.. ...++..++-++.
T Consensus 500 ~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~ 551 (591)
T PRK13616 500 VSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS 551 (591)
T ss_pred ccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc
Confidence 789999999865 54444444455443 2332222232 2456777777764
No 354
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.18 E-value=0.00089 Score=47.47 Aligned_cols=123 Identities=18% Similarity=0.155 Sum_probs=84.1
Q ss_pred CCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCC
Q 026679 66 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN 145 (235)
Q Consensus 66 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 145 (235)
..+++.|+..+.+..-|..+++. ... ..-...+.+-+.- -|++++.|+..|.+++.+.++|.....+..... -
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~----~We-~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~-v 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNL----IWE-AILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET-V 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcE----Eee-hhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh-h
Confidence 45677788888888888887664 111 1111223222222 467899999999999999999987766654332 1
Q ss_pred cceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeec
Q 026679 146 TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP 196 (235)
Q Consensus 146 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~ 196 (235)
. ......+++..+..|+.|+..+..|.++..++...+...+...+-+..|
T Consensus 96 k-~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 96 K-VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred c-cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence 1 2245677999999999999999999999888877664444334444455
No 355
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.4e-05 Score=62.61 Aligned_cols=90 Identities=12% Similarity=0.233 Sum_probs=69.5
Q ss_pred eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCccee-EEEEccCCCeEEEecCCCcEEEEEcCCCceeee
Q 026679 59 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC-DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG 137 (235)
Q Consensus 59 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 137 (235)
.+.|+|.-.++|.+..+|.+.+..+. .+. .....-+...++ +++|.|||+.|++|-.||+|++.|+.++..+..
T Consensus 25 ~~ewnP~~dLiA~~t~~gelli~R~n-~qR----lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 25 RIEWNPKMDLIATRTEKGELLIHRLN-WQR----LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred EEEEcCccchhheeccCCcEEEEEec-cce----eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 38899999999999999999888776 221 333333455565 999999999999999999999999999988776
Q ss_pred eccCCCCCcceeeEEeC
Q 026679 138 FSLEPSPNTNTEATFTP 154 (235)
Q Consensus 138 ~~~~~~~~~i~~~~~~~ 154 (235)
+... ....|.++-|++
T Consensus 100 ~~~s-~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFS-VETDISKGIWDR 115 (665)
T ss_pred cccc-cccchheeeccc
Confidence 4332 235577788864
No 356
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.12 E-value=0.0016 Score=48.38 Aligned_cols=172 Identities=17% Similarity=0.190 Sum_probs=101.8
Q ss_pred CCCeeEEEeccceEEEEecCcceeeeeeec-c-C-----CceEEEcCCCCEEEEEec-----------CCeEEEEeccCC
Q 026679 25 VNDSFMSGSLDHSVRIWDLRVNACQGILRL-R-G-----RPTVAFDQQGLVFAVAME-----------AGAIKLFDSRSY 86 (235)
Q Consensus 25 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~-~-----~~~~~~~~~~~~l~~~~~-----------dg~v~i~d~~~~ 86 (235)
.+..|+++.. .+.+++.+++..+..+.. . . .+-....|+|.+.+.... -|.++.+|. .+
T Consensus 76 ~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g 152 (307)
T COG3386 76 AGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG 152 (307)
T ss_pred CCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC
Confidence 3445555432 356677665555322221 1 1 122778888887665544 133333443 22
Q ss_pred CCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcCC--Cc---eeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679 87 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYG--GE---KRCGFSLEPSPNTNTEATFTPDGQYVV 160 (235)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~--~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (235)
.. ......+-..-+.++||||++.|+.+.. .+.|.-|++.. +. ..........++..-.++...+|.+-+
T Consensus 153 ~~----~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~ 228 (307)
T COG3386 153 GV----VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWV 228 (307)
T ss_pred CE----EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEE
Confidence 11 2233333455678999999988777765 47888888752 11 111122222345566688888898886
Q ss_pred EeCCCC-cEEEEEcCCCceeeeecCCCcceeEEEeec-CCCEEEEc
Q 026679 161 SGSGDG-TLHAWNINTRNEVACWNGNIGVVACLKWAP-RRAMFVAA 204 (235)
Q Consensus 161 ~~~~dg-~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 204 (235)
++..+| .|.+|+.. ++++..+..+...+++++|-- +.+.|...
T Consensus 229 ~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 229 AAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred ecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence 555554 89999987 999988887767888888864 44444433
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.07 E-value=0.0024 Score=48.23 Aligned_cols=173 Identities=14% Similarity=0.134 Sum_probs=104.9
Q ss_pred eEEEEecCcceeeeeeeccCCce------EEEcCC----CCEEEEEec---------C-CeEEEEeccCC-C-CCCceeE
Q 026679 37 SVRIWDLRVNACQGILRLRGRPT------VAFDQQ----GLVFAVAME---------A-GAIKLFDSRSY-D-KGPFDTF 94 (235)
Q Consensus 37 ~i~vwd~~~~~~~~~~~~~~~~~------~~~~~~----~~~l~~~~~---------d-g~v~i~d~~~~-~-~~~~~~~ 94 (235)
.|++.|..+.+.+..+....... +.+..+ ..++++|.. . |.+.++++... . .......
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57888888777777766554322 333332 467777753 2 89999999884 1 0112222
Q ss_pred eecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-eeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679 95 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 173 (235)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~ 173 (235)
......++|++++-- ++. |+++ .++.|.+|++...+ ....-..+.. ..+.++.. .++++++|.....+.++..
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~--~~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSP-FYITSLSV--FKNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BS-SSEEEEEE--ETTEEEEEESSSSEEEEEE
T ss_pred EEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecce-EEEEEEec--cccEEEEEEcccCEEEEEE
Confidence 233446788888766 344 4443 35789999998887 5544443332 24544444 4669999988888888765
Q ss_pred CC-Cceeeeec--CCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679 174 NT-RNEVACWN--GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 174 ~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~ 215 (235)
+. ...+..+. .....++++.+-+++..++.++ |++.++..+.
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 43 22233332 2345688899987767777776 8888888764
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.04 E-value=0.0024 Score=47.03 Aligned_cols=148 Identities=17% Similarity=0.209 Sum_probs=88.5
Q ss_pred cCCCeeEEEeccceEEEEec-CcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeE--------
Q 026679 24 PVNDSFMSGSLDHSVRIWDL-RVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF-------- 94 (235)
Q Consensus 24 ~~~~~l~s~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-------- 94 (235)
..++.|+.|..+| +.+++. .............+..+...|+-+.+++-+ |+.+.++++...........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 3468899998888 899998 333444444444444477777666665554 49999999887654331110
Q ss_pred --eecCCCcceeEEE--EccCCCeEEEecCCCcEEEEEcCCC-----ceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679 95 --LVGGDTAEVCDIK--FSNDGKSMLLTTTNNNIYVLDAYGG-----EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 165 (235)
Q Consensus 95 --~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (235)
........+..++ -.+.+...++......|.+|..... +..+.+... ..+..++|. ++.++.|..+
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp---~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP---DPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC---CCcEEEEEe--CCEEEEEeCC
Confidence 0111223344444 1223444444555558888887653 344555544 457888888 5577777655
Q ss_pred CcEEEEEcCCCcee
Q 026679 166 GTLHAWNINTRNEV 179 (235)
Q Consensus 166 g~i~v~d~~~~~~~ 179 (235)
+ ..+.|+.++...
T Consensus 158 ~-f~~idl~~~~~~ 170 (275)
T PF00780_consen 158 G-FYLIDLNTGSPS 170 (275)
T ss_pred c-eEEEecCCCCce
Confidence 4 677888765543
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.02 E-value=0.0035 Score=48.94 Aligned_cols=185 Identities=12% Similarity=0.124 Sum_probs=92.5
Q ss_pred EEeecCCCeeEEEecc-----------ceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCC
Q 026679 20 LCMSPVNDSFMSGSLD-----------HSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSY 86 (235)
Q Consensus 20 ~~~~~~~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~ 86 (235)
++.+|.|..+|....+ ..|.||+. .|+.+..+.-..... +.|..+ ..|++-..||.+++||+...
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCc
Confidence 4556666666655443 14888885 566666665554444 777764 45667779999999998643
Q ss_pred CCCCceeEeecCCCcce-----eEEEEccCCCeEEEecCCCcEEEEEcCCCcee-eee-ccCCCC------Cccee-eEE
Q 026679 87 DKGPFDTFLVGGDTAEV-----CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR-CGF-SLEPSP------NTNTE-ATF 152 (235)
Q Consensus 87 ~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~-~~~~~~------~~i~~-~~~ 152 (235)
. . ...........| ....+..+| ++.-..++.+.+..-...... ... ...... ..... ..+
T Consensus 112 ~--~-fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 112 F--Q-FSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred e--e-echhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEe
Confidence 2 0 000001111122 222333344 444445555555432222111 110 000000 00000 223
Q ss_pred eCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679 153 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 153 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~ 215 (235)
+.+....+....++.+.+.+-...+. +. ..+++..|+.||++++++.-. |.+.+...+.
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 44444444444455555444322211 22 236899999999999998776 5666665443
No 360
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.99 E-value=0.00044 Score=53.27 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=85.1
Q ss_pred ceeEEEeecCCCeeEEEeccceEEEEecCcceeee-eeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCC-----
Q 026679 16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG-ILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG----- 89 (235)
Q Consensus 16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~----- 89 (235)
.|+.+.|+++...|+.|...|.|.+|.....+... .-.... .-..+.+- ...++.-.+-|+......
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~-~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~g 75 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPD-LDYNFRRF------SLNNSPGKLTDISDRAPPSLKEG 75 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--------GGGSS-SEEE-GGG--TT-SEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcc-cCcccccc------cccCCCcceEEehhhCCcccccc
Confidence 58899999998899999999999999876544332 000000 00111110 001112223343322111
Q ss_pred CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCC------CCCcceeeEEeC-----CC--
Q 026679 90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP------SPNTNTEATFTP-----DG-- 156 (235)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------~~~~i~~~~~~~-----~~-- 156 (235)
-.....+....++|++++.+ |=.+++.|..+|.+.+.|+|....+..-.... ....++++.|+. |+
T Consensus 76 f~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 76 FLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp EEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred cCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 11223344457899999997 45589999999999999999888776644333 335677888863 22
Q ss_pred -cEEEEeCCCCcEEEEEcC
Q 026679 157 -QYVVSGSGDGTLHAWNIN 174 (235)
Q Consensus 157 -~~l~~~~~dg~i~v~d~~ 174 (235)
-.|++|+..|.+.+|.+.
T Consensus 155 Si~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEEETTSEEEEEEEE
T ss_pred ceEEEEEeCCCCEEEEEEe
Confidence 468899999999999874
No 361
>PHA02713 hypothetical protein; Provisional
Probab=97.99 E-value=0.0013 Score=53.40 Aligned_cols=194 Identities=7% Similarity=-0.013 Sum_probs=98.0
Q ss_pred CCCeeEEEecc------ceEEEEecCcceeee--eeeccCCceEEEcCCCCEEEEEecCC-----eEEEEeccCCCCCCc
Q 026679 25 VNDSFMSGSLD------HSVRIWDLRVNACQG--ILRLRGRPTVAFDQQGLVFAVAMEAG-----AIKLFDSRSYDKGPF 91 (235)
Q Consensus 25 ~~~~l~s~~~d------~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~ 91 (235)
++..++.||.+ ..+..||..++.-.. .+...........-++++.+.|+.++ .+..||..+......
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 34556666643 246677776653221 11111111123334778888888754 478899876543111
Q ss_pred eeEeecCCCcceeEEEEccCCCeEEEecCC-----------------------CcEEEEEcCCCceeeeeccCCCCCcce
Q 026679 92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----------------------NNIYVLDAYGGEKRCGFSLEPSPNTNT 148 (235)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------------------~~i~~~d~~~~~~~~~~~~~~~~~~i~ 148 (235)
.. +.........+ .-++...+.|+.+ ..+..||..+.+....-.+.......
T Consensus 383 ~~--mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~- 457 (557)
T PHA02713 383 PD--MPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP- 457 (557)
T ss_pred CC--CCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC-
Confidence 11 11111111112 2256777777654 24778898877654333322221111
Q ss_pred eeEEeCCCcEEEEeCCC------CcEEEEEcCC-Cce--eeeecCCCcceeEEEeecCCCEEEEcc--c--ceEEeeCCC
Q 026679 149 EATFTPDGQYVVSGSGD------GTLHAWNINT-RNE--VACWNGNIGVVACLKWAPRRAMFVAAS--S--VLSFWIPNP 215 (235)
Q Consensus 149 ~~~~~~~~~~l~~~~~d------g~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--~i~iw~~~~ 215 (235)
....-+++..+.|+.+ ..+..||..+ .+- +..+....... +++.. ++++.+.|+ + ++..||+.+
T Consensus 458 -~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~-~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 458 -GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL-HTILH-DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred -cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc-eeEEE-CCEEEEEeeecceeehhhcCccc
Confidence 1222356777777654 2467899876 333 33333222222 22222 667777776 3 588888877
Q ss_pred CCCCCCCCCCC
Q 026679 216 SSNSTDESTDP 226 (235)
Q Consensus 216 ~~~~~~~~~~~ 226 (235)
.+-..+.....
T Consensus 535 ~~W~~~~~~~~ 545 (557)
T PHA02713 535 YEWNHICHQHS 545 (557)
T ss_pred ccccchhhhcC
Confidence 76555544433
No 362
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.99 E-value=0.0032 Score=51.29 Aligned_cols=149 Identities=13% Similarity=0.135 Sum_probs=84.9
Q ss_pred ceEEEcCCCCEEEEEe------cCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC----------
Q 026679 58 PTVAFDQQGLVFAVAM------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---------- 121 (235)
Q Consensus 58 ~~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------- 121 (235)
...+++|+|+.++... .|..-.+|-...... . ... ..+ .....-.|+|+|+.+++....
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~-~~l-t~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-A-VQV-LEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred ccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-c-eee-ecC--CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 3488999999887766 244334443322221 1 111 222 237788999998877776533
Q ss_pred --CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEE---EEcCCCce-e---eee-cCCCcceeE
Q 026679 122 --NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA---WNINTRNE-V---ACW-NGNIGVVAC 191 (235)
Q Consensus 122 --~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v---~d~~~~~~-~---~~~-~~~~~~v~~ 191 (235)
+.+.+.++..+.... .....|..+.|||||..++... +|.|++ -....|.. + ..+ ..-...+.+
T Consensus 428 ~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 428 ATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred CCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 233333443333221 1234599999999999987765 467777 44344541 1 112 122334688
Q ss_pred EEeecCCCEEEEcc-cceEEe--eCCCCC
Q 026679 192 LKWAPRRAMFVAAS-SVLSFW--IPNPSS 217 (235)
Q Consensus 192 ~~~~~~~~~l~~~~-~~i~iw--~~~~~~ 217 (235)
+.|.+++.+++... +.-.+| ++++..
T Consensus 502 l~W~~~~~L~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 502 LDWRTGDSLVVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred ceEecCCEEEEEecCCCCceEEEecCCcc
Confidence 99999998765544 434445 445443
No 363
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.00029 Score=54.61 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=88.5
Q ss_pred EEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCC-------eEEEecCCCcEEEEEcCCCce--eeeec
Q 026679 69 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-------SMLLTTTNNNIYVLDAYGGEK--RCGFS 139 (235)
Q Consensus 69 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~~~d~~~~~~--~~~~~ 139 (235)
|..+.....++-.|++.++. .-...-+.. |.-+.+.|+.+ .-+.|-.+..|.-||+|-... +....
T Consensus 349 l~~~~~~~~l~klDIE~GKI----VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKI----VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred eeCCCCcCcceeeeccccee----eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 44455556677778877664 222222222 66666776543 234566788899999984332 11111
Q ss_pred cCCC--CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCC
Q 026679 140 LEPS--PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPN 214 (235)
Q Consensus 140 ~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~ 214 (235)
.+.. .....|.+-..+| ++++|+.+|.|++||--..+....+++...+|..+..+.+|.+|++.+ ..+.+.+..
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 1111 1223444444444 899999999999999733334455677888999999999999998888 556666654
No 364
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.97 E-value=0.0047 Score=49.46 Aligned_cols=155 Identities=12% Similarity=0.088 Sum_probs=93.7
Q ss_pred CCeeEEEeccceEEEEecCcceeeeeeeccCC------ce----EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEe
Q 026679 26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGR------PT----VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL 95 (235)
Q Consensus 26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~------~~----~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 95 (235)
+..++.++.++.+.-.|.++++.+..+..... .. ++.. ++..++.++.++.+..+|.++++.. ....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~--W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQV--WKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEe--eeec
Confidence 44677778889999999999988776654332 00 1111 2267888888999999999987751 1122
Q ss_pred ecCCCcceeEEEEcc--CCCeEEEec---------CCCcEEEEEcCCCceeeeeccCCCCC------------------c
Q 026679 96 VGGDTAEVCDIKFSN--DGKSMLLTT---------TNNNIYVLDAYGGEKRCGFSLEPSPN------------------T 146 (235)
Q Consensus 96 ~~~~~~~v~~~~~~~--~~~~l~~~~---------~d~~i~~~d~~~~~~~~~~~~~~~~~------------------~ 146 (235)
...+...-..+.-+| .+..++.++ .++.+..+|..+++..-.+....... .
T Consensus 138 ~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 111100000011111 123455553 36789999999998877665432100 0
Q ss_pred -ceeeEEeCCCcEEEEeCCCC------------------cEEEEEcCCCceeeeec
Q 026679 147 -NTEATFTPDGQYVVSGSGDG------------------TLHAWNINTRNEVACWN 183 (235)
Q Consensus 147 -i~~~~~~~~~~~l~~~~~dg------------------~i~v~d~~~~~~~~~~~ 183 (235)
-...++.+.+..++.++.++ .|.-+|..+|+.+-.++
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 01245555667777777665 69999999999876654
No 365
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.97 E-value=0.0028 Score=50.75 Aligned_cols=155 Identities=14% Similarity=0.157 Sum_probs=94.5
Q ss_pred EeecCCCeeEEEeccc------------------eEEEEecCcceeeeeeeccCC----------ceEE-Ec-CCCC---
Q 026679 21 CMSPVNDSFMSGSLDH------------------SVRIWDLRVNACQGILRLRGR----------PTVA-FD-QQGL--- 67 (235)
Q Consensus 21 ~~~~~~~~l~s~~~d~------------------~i~vwd~~~~~~~~~~~~~~~----------~~~~-~~-~~~~--- 67 (235)
++.+.+..++.++.++ .|.-.|.++++....++.... +.+. .. -++.
T Consensus 223 a~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~ 302 (488)
T cd00216 223 TYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVP 302 (488)
T ss_pred eEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeE
Confidence 3444456777776554 788999999998877653211 1111 11 1333
Q ss_pred EEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEe------------------cCCCcEEEEEc
Q 026679 68 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT------------------TTNNNIYVLDA 129 (235)
Q Consensus 68 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------------~~d~~i~~~d~ 129 (235)
.+++++.+|.+..+|.++++..- ..... ...++.+| ..++.+ ..+|.+.-.|+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W--~~~~~-----~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~ 373 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLIS--ARPEV-----EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP 373 (488)
T ss_pred EEEEECCCceEEEEECCCCcEee--EeEee-----ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence 57788899999999999987521 11111 11122333 223322 24678999999
Q ss_pred CCCceeeeeccCCCC------CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecC
Q 026679 130 YGGEKRCGFSLEPSP------NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG 184 (235)
Q Consensus 130 ~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 184 (235)
.+++.+-........ .+...-.....+..|++++.||.|+.+|.++|+.+-+.+.
T Consensus 374 ~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 374 KTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 999877665543111 0111111112567888999999999999999999877753
No 366
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.97 E-value=0.0036 Score=46.65 Aligned_cols=193 Identities=13% Similarity=0.149 Sum_probs=104.8
Q ss_pred EeecCCC-eeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEecCCeEEEEeccCCCCC-CceeEeec
Q 026679 21 CMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKG-PFDTFLVG 97 (235)
Q Consensus 21 ~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~-~~~~~~~~ 97 (235)
.|.++.. ++.+--..+.|.-|+..+++............ ......+. |+++.. .+.+++.++.... ........
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~-Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~ 107 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGR-LIACEH--GVRLLDPDTGGKITLLAEPEDG 107 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCe-EEEEcc--ccEEEeccCCceeEEeccccCC
Confidence 4566655 34444556778888876554333322233333 44444443 444332 3455555433220 00000001
Q ss_pred CCCcceeEEEEccCCCeEEEecC-----------CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-C
Q 026679 98 GDTAEVCDIKFSNDGKSMLLTTT-----------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-D 165 (235)
Q Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d 165 (235)
......+.....|+|.+.+.... -|.++.+|. .+....... .+-...+.++||||++.|+.+.. .
T Consensus 108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~--~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD--DDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec--CcEEecCceEECCCCCEEEEEeCCC
Confidence 11234567888999886555433 134555554 344433322 22234577999999987776644 5
Q ss_pred CcEEEEEcCC--Cce-----eeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCCCC
Q 026679 166 GTLHAWNINT--RNE-----VACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNS 219 (235)
Q Consensus 166 g~i~v~d~~~--~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~~ 219 (235)
+.|+-|++.. +.. ...+....+..-.++...+|.+.+++. +.+.+|+.+.....
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~ 248 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLG 248 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEE
Confidence 7888887752 211 122223456677888888998886443 37999999855443
No 367
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.96 E-value=0.0029 Score=45.49 Aligned_cols=180 Identities=15% Similarity=0.184 Sum_probs=115.2
Q ss_pred eeEEEeecCCCeeEEEeccc--eEEEEecCcceeeeeeeccCCce---EEEcCCCCEEEEEecCCeEEEEeccCCCCCCc
Q 026679 17 VISLCMSPVNDSFMSGSLDH--SVRIWDLRVNACQGILRLRGRPT---VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF 91 (235)
Q Consensus 17 v~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 91 (235)
...+.|..+|.++-+.+.-| .|+.+|+.+++.......+.... ++.. ++++....-.++...+||..+.+. .
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~--~ 123 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK--I 123 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE--E
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceE--E
Confidence 44677766777777777665 79999999998887776665322 4443 445566666789999999987653 2
Q ss_pred eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC---CcceeeEEeCCCcEEEEeCCCCcE
Q 026679 92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---NTNTEATFTPDGQYVVSGSGDGTL 168 (235)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i 168 (235)
..+.. ...-..++ .|++.|+.......++.+|..+-+....+...... ..++.+.+- +|...|-.=....|
T Consensus 124 ~~~~y---~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 124 GTFPY---PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp EEEE----SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEec---CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeE
Confidence 22222 23445555 57788888888889999999887766665544332 235556665 67666666667778
Q ss_pred EEEEcCCCceeeeecC------------C---CcceeEEEeecCCCEEEEcc
Q 026679 169 HAWNINTRNEVACWNG------------N---IGVVACLKWAPRRAMFVAAS 205 (235)
Q Consensus 169 ~v~d~~~~~~~~~~~~------------~---~~~v~~~~~~~~~~~l~~~~ 205 (235)
...|..+|+.+..+.. . ......|++.|....+...+
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 8899999987665410 1 34678999999776666655
No 368
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=7.7e-05 Score=62.20 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=76.1
Q ss_pred CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCccee
Q 026679 111 DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVA 190 (235)
Q Consensus 111 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~ 190 (235)
.+..++.|+..|.+-..|+... ...-.......++|++++|+.+|+.++.|-.+|.|.+||...++.++.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 4557888999999999998653 111122333447899999999999999999999999999999999888876666555
Q ss_pred EE---EeecCCCEEEEcccceEEeeCC
Q 026679 191 CL---KWAPRRAMFVAASSVLSFWIPN 214 (235)
Q Consensus 191 ~~---~~~~~~~~l~~~~~~i~iw~~~ 214 (235)
++ .+..++..+++++..-.+|.+.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gsf~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGSFWKLV 203 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCceEEEE
Confidence 54 4445666788887333466653
No 369
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.95 E-value=0.0042 Score=46.92 Aligned_cols=143 Identities=13% Similarity=0.148 Sum_probs=86.3
Q ss_pred CCeeEEEec----------cceEEEEecCcc----eeee---eeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCC
Q 026679 26 NDSFMSGSL----------DHSVRIWDLRVN----ACQG---ILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK 88 (235)
Q Consensus 26 ~~~l~s~~~----------d~~i~vwd~~~~----~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 88 (235)
..+|+.|.. .|.|.++++... ..+. .... ..++.++.+-+..++++. .+.+.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~-~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~- 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV-KGPVTAICSFNGRLVVAV-GNKLYVYDLDNSK- 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE-SS-EEEEEEETTEEEEEE-TTEEEEEEEETTS-
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee-cCcceEhhhhCCEEEEee-cCEEEEEEccCcc-
Confidence 356776643 289999999873 1222 2222 234444444344444443 4799999998866
Q ss_pred CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC-CceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCc
Q 026679 89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 167 (235)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (235)
.............+.++... ++++++|.....+.++.... ...+..+.....+..++++.|-++++.++.+..+|.
T Consensus 119 -~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 119 -TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp -SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred -cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 12222222223355555544 66899999888888875543 332333333444566888999877679999999999
Q ss_pred EEEEEcC
Q 026679 168 LHAWNIN 174 (235)
Q Consensus 168 i~v~d~~ 174 (235)
+.++...
T Consensus 196 l~~l~~~ 202 (321)
T PF03178_consen 196 LFVLRYN 202 (321)
T ss_dssp EEEEEE-
T ss_pred EEEEEEC
Confidence 9999875
No 370
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.95 E-value=0.0029 Score=44.99 Aligned_cols=137 Identities=12% Similarity=0.013 Sum_probs=87.3
Q ss_pred CCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCccee
Q 026679 26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 104 (235)
Q Consensus 26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~ 104 (235)
..+++.|+..+.+.--|..+|+......... ..+-+.- -|+.++.|+..|.+++.+.+++.. ...+.....--.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~----~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ----IWNFVILETVKV 97 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh----eeeeeehhhhcc
Confidence 3678889999999999999888765543322 1121111 567899999999999999999864 211111111112
Q ss_pred EEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEE
Q 026679 105 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLH 169 (235)
Q Consensus 105 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 169 (235)
.....+++..+..++.|+..+..|.++...+...+..+. ...+-+..|-...|..+...|.+.
T Consensus 98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCCceEEEEeccceEE
Confidence 345677899999999999999999999887766444332 233345555223333333444433
No 371
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.89 E-value=0.0037 Score=50.84 Aligned_cols=190 Identities=14% Similarity=0.194 Sum_probs=104.6
Q ss_pred EEEeecCCCeeEEEecc------ceEEEEecCcceeeeeeeccCCce-E-EEcCCCCEEEEEecCC-----eEEEEeccC
Q 026679 19 SLCMSPVNDSFMSGSLD------HSVRIWDLRVNACQGILRLRGRPT-V-AFDQQGLVFAVAMEAG-----AIKLFDSRS 85 (235)
Q Consensus 19 ~~~~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~dg-----~v~i~d~~~ 85 (235)
+++.. ++...++|+.| .++..||..+++=...-....... . ...-+|.+.++|+.|| ++..||..+
T Consensus 327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC
Confidence 34444 35677888888 357778877665322222222222 2 2233788999999886 577788877
Q ss_pred CCCCCceeEeecCCCcceeEEEE-ccCCCeEEEecCC------CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679 86 YDKGPFDTFLVGGDTAEVCDIKF-SNDGKSMLLTTTN------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 158 (235)
Q Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (235)
.+........ ........ .-+|...++|+.+ .++..||..+++....-.+........ ++ .-++..
T Consensus 406 ~~W~~va~m~-----~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~i 478 (571)
T KOG4441|consen 406 NKWTPVAPML-----TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKI 478 (571)
T ss_pred CcccccCCCC-----cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEE
Confidence 6642222111 11222222 2267777777754 357889988877665444433322222 22 236778
Q ss_pred EEEeCCCCc-----EEEEEcCCCceeee--ecCCCcceeEEEeecCCCEEEEcc-------cceEEeeCCCCCC
Q 026679 159 VVSGSGDGT-----LHAWNINTRNEVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSSN 218 (235)
Q Consensus 159 l~~~~~dg~-----i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~iw~~~~~~~ 218 (235)
.+.|+.|+. +..||..+.+.... +......+. ++. -++...+.|+ +++..||..+.+-
T Consensus 479 YvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g-~~~-~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 479 YVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG-VVV-LGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred EEECCccCCCccceEEEEcCCCCceeEcccCcccccccc-EEE-ECCEEEEEecccCccccceeEEcCCCCCce
Confidence 888887763 77788876654332 222222221 222 2455555554 4588888776543
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.85 E-value=0.0029 Score=46.56 Aligned_cols=148 Identities=14% Similarity=0.066 Sum_probs=89.1
Q ss_pred CCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec----
Q 026679 64 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS---- 139 (235)
Q Consensus 64 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---- 139 (235)
..++.|+.|+.+| +.+++...... . .. ..+...|..+...|+-+.|++-+ |+.++++++..-.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~-~--~~--i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK-P--TR--ILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc-c--ee--EeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence 4678899998888 89999833221 1 11 11223499999999877777665 4999999987654433110
Q ss_pred --------cCCCCCcceeeE--EeCCCcEEEEeCCCCcEEEEEcCCC-----ceeeeecCCCcceeEEEeecCCCEEEEc
Q 026679 140 --------LEPSPNTNTEAT--FTPDGQYVVSGSGDGTLHAWNINTR-----NEVACWNGNIGVVACLKWAPRRAMFVAA 204 (235)
Q Consensus 140 --------~~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~v~d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 204 (235)
.-.....+...+ -.+.+...++......|.+|..... +...++. -...+..++|. +..++.+
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEE
Confidence 001111233333 1123333334444458888887653 3445554 34778999998 4566666
Q ss_pred -ccceEEeeCCCCCCCCC
Q 026679 205 -SSVLSFWIPNPSSNSTD 221 (235)
Q Consensus 205 -~~~i~iw~~~~~~~~~~ 221 (235)
.+...+.|+++.....+
T Consensus 155 ~~~~f~~idl~~~~~~~l 172 (275)
T PF00780_consen 155 TSKGFYLIDLNTGSPSEL 172 (275)
T ss_pred eCCceEEEecCCCCceEE
Confidence 47789999986655544
No 373
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.82 E-value=0.0042 Score=46.31 Aligned_cols=156 Identities=14% Similarity=0.105 Sum_probs=95.9
Q ss_pred CeeEEEeccceEEEEecC-cceeeeee----eccCCce---EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecC
Q 026679 27 DSFMSGSLDHSVRIWDLR-VNACQGIL----RLRGRPT---VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG 98 (235)
Q Consensus 27 ~~l~s~~~d~~i~vwd~~-~~~~~~~~----~~~~~~~---~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 98 (235)
+.|.+-+.||.+.-..+. .|+..... .....+. -++...+..++.-+.+|.|+-.|+............+..
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 457888889999888887 34433221 1111222 344556667777889999999888775532211111110
Q ss_pred --------CCcceeEEEEccCCCeEEEecCC----------CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc-EE
Q 026679 99 --------DTAEVCDIKFSNDGKSMLLTTTN----------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YV 159 (235)
Q Consensus 99 --------~~~~v~~~~~~~~~~~l~~~~~d----------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l 159 (235)
-.+.-.-+++++..+.|++.... ..|.++|+.+++.+..+.+. .++.+++.+.+.+ +|
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L 304 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE---HPIDSIAVSQDDKPLL 304 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE---EEESEEEEESSSS-EE
T ss_pred ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC---CccceEEEccCCCcEE
Confidence 11233456777765555554321 24999999999999888875 2377899998766 45
Q ss_pred EE-eCCCCcEEEEEcCCCceeeeecCC
Q 026679 160 VS-GSGDGTLHAWNINTRNEVACWNGN 185 (235)
Q Consensus 160 ~~-~~~dg~i~v~d~~~~~~~~~~~~~ 185 (235)
++ ...++.|.+||..+|+.+..+..-
T Consensus 305 ~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 305 YALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEEETTTTEEEEEETTT--EEEEE---
T ss_pred EEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 43 456899999999999999888643
No 374
>PHA03098 kelch-like protein; Provisional
Probab=97.81 E-value=0.01 Score=48.17 Aligned_cols=187 Identities=10% Similarity=0.041 Sum_probs=91.4
Q ss_pred CCCeeEEEeccc------eEEEEecCcceeeeeeecc--CCceEEEcCCCCEEEEEecC-----CeEEEEeccCCCCCCc
Q 026679 25 VNDSFMSGSLDH------SVRIWDLRVNACQGILRLR--GRPTVAFDQQGLVFAVAMEA-----GAIKLFDSRSYDKGPF 91 (235)
Q Consensus 25 ~~~~l~s~~~d~------~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~ 91 (235)
++..++.|+.++ .+..||..+++-...-... ........-++.+++.|+.+ ..+..||..+......
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 345566666432 4667787665432221111 11112223367788888765 3577788776543211
Q ss_pred eeEeecCCCcceeEEEEccCCCeEEEecCC------CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679 92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTN------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 165 (235)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (235)
.... ..... .+++ .-+++..+.|+.+ ..+..||..+++....-........ .+ +...+++.++.|+.+
T Consensus 374 ~~lp--~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~-~~~~~~~iyv~GG~~ 447 (534)
T PHA03098 374 PPLI--FPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GC-AIYHDGKIYVIGGIS 447 (534)
T ss_pred CCcC--cCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ce-EEEECCEEEEECCcc
Confidence 1111 11111 1122 2356666666632 4588999887665432222211111 11 223356677777643
Q ss_pred C--------cEEEEEcCCCceeee--ecCCCcceeEEEeecCCCEEEEcc-------cceEEeeCCCCCCC
Q 026679 166 G--------TLHAWNINTRNEVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSSNS 219 (235)
Q Consensus 166 g--------~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~iw~~~~~~~~ 219 (235)
+ .+.+||..+.+-... +...... .++. .-++..++.|+ +++.+||+++..-.
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN-ASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCccccc-ceEE-EECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 2 388899876654322 1111111 1122 22666767765 25788888765433
No 375
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.79 E-value=0.0049 Score=50.18 Aligned_cols=189 Identities=13% Similarity=0.129 Sum_probs=102.7
Q ss_pred CCeeEEEeccc------eEEEEecCcceeeeeeeccCC--ceEEEcCCCCEEEEEecC------CeEEEEeccCCCCCCc
Q 026679 26 NDSFMSGSLDH------SVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEA------GAIKLFDSRSYDKGPF 91 (235)
Q Consensus 26 ~~~l~s~~~d~------~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~ 91 (235)
+.+++.|+.++ .+..+|..++.-......... ......-++.+.++|+.+ ..+..||....+....
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 55677777763 677888877744333332222 222333456888899888 3677888887664332
Q ss_pred eeEeecCCCcceeEEEEccCCCeEEEecCCCc-----EEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC
Q 026679 92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN-----IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 166 (235)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (235)
.......+...+.. -+|...++|+.||. +-.||..+.+....-.......... .-.-+|+..++|+.++
T Consensus 365 a~M~~~R~~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~g--v~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 365 APMNTKRSDFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHG--VAVLGGKLYIIGGGDG 438 (571)
T ss_pred CCccCccccceeEE----ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeE--EEEECCEEEEEcCcCC
Confidence 22222111222221 26778888888864 7888888766544333322111111 2223778888888654
Q ss_pred ------cEEEEEcCCCceeeeecCCCcc-eeEEEeecCCCEEEEcc--c-----ceEEeeCCCCCCCCC
Q 026679 167 ------TLHAWNINTRNEVACWNGNIGV-VACLKWAPRRAMFVAAS--S-----VLSFWIPNPSSNSTD 221 (235)
Q Consensus 167 ------~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~--~-----~i~iw~~~~~~~~~~ 221 (235)
.+..||..+.+....-...... -..++. -++.+.+.|+ + .+..||+.+.+-...
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 4778888766543222111111 111222 2556666665 2 277788876654433
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=0.0038 Score=45.03 Aligned_cols=109 Identities=12% Similarity=0.171 Sum_probs=78.0
Q ss_pred eeEEEEccCC-CeEEEecCCCc-EEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-----CCcEEEEEcCC
Q 026679 103 VCDIKFSNDG-KSMLLTTTNNN-IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-----DGTLHAWNINT 175 (235)
Q Consensus 103 v~~~~~~~~~-~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~v~d~~~ 175 (235)
...++++|.. ..++.+-.-|+ ..++|....+..............-.-.|||||.+|+..-. .|.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 3456777743 34444544443 67889888777666554443333444679999999987643 47799999974
Q ss_pred C-ceeeeecCCCcceeEEEeecCCCEEEEcccceEEe
Q 026679 176 R-NEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFW 211 (235)
Q Consensus 176 ~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw 211 (235)
+ ..+.++..|.-....+.|.+||+.++.+.|-|...
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIeth 186 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETH 186 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecc
Confidence 3 45677888887889999999999999998877766
No 377
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.72 E-value=0.00015 Score=35.02 Aligned_cols=34 Identities=29% Similarity=0.474 Sum_probs=29.7
Q ss_pred eecCCCcceeEEEEccCCCeEEEecCCCcEEEEE
Q 026679 95 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 128 (235)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 128 (235)
.+..|...+.++.|.+++..+++++.|+.+++|+
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3446778899999999999999999999999996
No 378
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.70 E-value=0.0099 Score=45.79 Aligned_cols=188 Identities=10% Similarity=0.064 Sum_probs=90.5
Q ss_pred CCeeEEEe-ccceEEEEecCc----ceeeeeeeccCC---------ceEEEcCCCCEEEEEec------CCeEEEEeccC
Q 026679 26 NDSFMSGS-LDHSVRIWDLRV----NACQGILRLRGR---------PTVAFDQQGLVFAVAME------AGAIKLFDSRS 85 (235)
Q Consensus 26 ~~~l~s~~-~d~~i~vwd~~~----~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~------dg~v~i~d~~~ 85 (235)
.++|+..+ ..+.|+|.|+.+ .+..+++..... ..+-.-|+|++++++-. -|-+.++|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 45666655 678899999874 344555543211 11445578888887743 24677777665
Q ss_pred CCCCCceeEeec---CCCcceeEEEEccCCCeEEEecC--------------------CCcEEEEEcCCCceeeeeccCC
Q 026679 86 YDKGPFDTFLVG---GDTAEVCDIKFSNDGKSMLLTTT--------------------NNNIYVLDAYGGEKRCGFSLEP 142 (235)
Q Consensus 86 ~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~--------------------d~~i~~~d~~~~~~~~~~~~~~ 142 (235)
.+. .-... .....-..+-|.|..+.+++... ..++.+||+.+.+.++.+.+..
T Consensus 167 f~v----~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~ 242 (461)
T PF05694_consen 167 FEV----KGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE 242 (461)
T ss_dssp --E----EEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred ccc----cceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence 442 11111 11233456777887777776532 3579999999999999988865
Q ss_pred CCCcceeeEEeC--CCcEEEE-eCCCCcEEEEEc-CCCce----eeeecC-----------------CCcceeEEEeecC
Q 026679 143 SPNTNTEATFTP--DGQYVVS-GSGDGTLHAWNI-NTRNE----VACWNG-----------------NIGVVACLKWAPR 197 (235)
Q Consensus 143 ~~~~i~~~~~~~--~~~~l~~-~~~dg~i~v~d~-~~~~~----~~~~~~-----------------~~~~v~~~~~~~~ 197 (235)
.......+.|.. +..+=++ +...++|..|-- ..++- +..+.. -..-|+.|..|.|
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD 322 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD 322 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence 444455666654 3433222 223444444433 33321 112211 1245799999999
Q ss_pred CCEEEEcc---cceEEeeCCCCC
Q 026679 198 RAMFVAAS---SVLSFWIPNPSS 217 (235)
Q Consensus 198 ~~~l~~~~---~~i~iw~~~~~~ 217 (235)
.++|..+. |+++.||+....
T Consensus 323 DrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 323 DRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp S-EEEEEETTTTEEEEEE-SSTT
T ss_pred CCEEEEEcccCCcEEEEecCCCC
Confidence 99999987 899999996543
No 379
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.68 E-value=0.0074 Score=46.50 Aligned_cols=143 Identities=17% Similarity=0.232 Sum_probs=75.8
Q ss_pred eEEEcCCCCEEEEEe-----------cCC-eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEE
Q 026679 59 TVAFDQQGLVFAVAM-----------EAG-AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 126 (235)
Q Consensus 59 ~~~~~~~~~~l~~~~-----------~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 126 (235)
.++|.++|+++++-. ..+ .|.+++-.+..........+.........+++.+++ |+++... .|..
T Consensus 18 ~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~-~i~~ 94 (367)
T TIGR02604 18 AVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP-DILF 94 (367)
T ss_pred eeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC-eEEE
Confidence 377888887766643 123 666665443332111122222223356788898888 4444444 3544
Q ss_pred E-EcCCC-----ce--e-eeeccCC--CCCcceeeEEeCCCcEEEEeCCC-------------------CcEEEEEcCCC
Q 026679 127 L-DAYGG-----EK--R-CGFSLEP--SPNTNTEATFTPDGQYVVSGSGD-------------------GTLHAWNINTR 176 (235)
Q Consensus 127 ~-d~~~~-----~~--~-~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-------------------g~i~v~d~~~~ 176 (235)
+ |.... +. + ..+.... +......+.|.|||.+.++-+.. |.|.-++...+
T Consensus 95 ~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~ 174 (367)
T TIGR02604 95 LRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG 174 (367)
T ss_pred EeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCC
Confidence 4 44221 11 1 1121110 12346789999999876654421 44555665544
Q ss_pred ceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679 177 NEVACWNGNIGVVACLKWAPRRAMFVAAS 205 (235)
Q Consensus 177 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 205 (235)
+. ..+.........++|+|+|.++++-.
T Consensus 175 ~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 175 KL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred eE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 43 23322223457899999998887654
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0004 Score=58.19 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=75.7
Q ss_pred CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC
Q 026679 65 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP 144 (235)
Q Consensus 65 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 144 (235)
.+..++.|+..|.+...|....-. + ...-.....+|++++|+.+|..++.|-.+|.|.+||+..++..+.+..++++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~-~--~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG-P--LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc-h--hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc
Confidence 556788899999999988876321 1 1222234578999999999999999999999999999999888887766554
Q ss_pred -CcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679 145 -NTNTEATFTPDGQYVVSGSGDGTLHAWNI 173 (235)
Q Consensus 145 -~~i~~~~~~~~~~~l~~~~~dg~i~v~d~ 173 (235)
..+..+.+..++..++++...|. +|.+
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 22333444556667888877775 4543
No 381
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.65 E-value=0.00024 Score=36.58 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=29.2
Q ss_pred ccceeEEEeecCCCeeEEEeccceEEEEecCccee
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC 48 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 48 (235)
...|.+++|+|...+||.+..||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 4443
No 382
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.64 E-value=0.0045 Score=38.12 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=60.1
Q ss_pred CEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCc
Q 026679 67 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT 146 (235)
Q Consensus 67 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 146 (235)
+.|++|+.|..|++|+-.. ..........|.++.-... ..++.+..+|+|-+|+-.... ...+.. ..
T Consensus 16 ~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl----WRiKSK-~~ 82 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDE-------IVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL----WRIKSK-NQ 82 (111)
T ss_pred ceEEEecCCcEEEEEeCCc-------EEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCccee----eeeccC-CC
Confidence 6799999999999998654 2222234467777777665 569999999999999853221 222222 23
Q ss_pred ceeeEEeC-CC---cEEEEeCCCCcEE
Q 026679 147 NTEATFTP-DG---QYVVSGSGDGTLH 169 (235)
Q Consensus 147 i~~~~~~~-~~---~~l~~~~~dg~i~ 169 (235)
+.++.+.. ++ ..|++|-.+|.|-
T Consensus 83 ~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 83 VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 56666544 32 3688888888764
No 383
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.62 E-value=0.00025 Score=36.49 Aligned_cols=33 Identities=12% Similarity=0.332 Sum_probs=29.6
Q ss_pred CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCce
Q 026679 145 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178 (235)
Q Consensus 145 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~ 178 (235)
..|..++|+|...+||.++.+|.|.+|.+ +++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 55899999999999999999999999998 5554
No 384
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.59 E-value=0.006 Score=49.60 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=77.2
Q ss_pred eEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEe--CCCcEEEEeCCCCcEEEEEcC-----C-
Q 026679 104 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT--PDGQYVVSGSGDGTLHAWNIN-----T- 175 (235)
Q Consensus 104 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~v~d~~-----~- 175 (235)
.-+.-+.-++..++-+....+.+||.+.+........ ...+.|..+.|. |+|+.+++.+-.+.|.+|.-. +
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3344444445444445566799999998886655554 234678999885 588998888888888888542 1
Q ss_pred ---Cceeeee--cCCC-cceeEEEeecCCCEEEEcccceEEeeCCCC
Q 026679 176 ---RNEVACW--NGNI-GVVACLKWAPRRAMFVAASSVLSFWIPNPS 216 (235)
Q Consensus 176 ---~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~ 216 (235)
...+..+ ..++ .+|.+..|.++|.+++++++.+.|++-...
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~~~ 158 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKWLD 158 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCCcC
Confidence 1222222 2333 589999999999999999999999976443
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.00057 Score=47.37 Aligned_cols=141 Identities=13% Similarity=0.079 Sum_probs=83.5
Q ss_pred EEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcc
Q 026679 68 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTN 147 (235)
Q Consensus 68 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 147 (235)
.+...+.+|.|.-++++..+.... ....+... .....-+..+++|+.+|.|++|................ ..+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~r---se~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~-e~i 104 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCR---SERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE-ESI 104 (238)
T ss_pred hhccccCCcccccchhhhhhhhhh---hhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhccc-ccc
Confidence 344556677777777765332110 00011111 11222346799999999999998763222211111111 222
Q ss_pred ee-eEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCC-cceeEEEeecCCCEEEEc--c--cceEEeeCCC
Q 026679 148 TE-ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI-GVVACLKWAPRRAMFVAA--S--SVLSFWIPNP 215 (235)
Q Consensus 148 ~~-~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~--~~i~iw~~~~ 215 (235)
.+ +.--.++.+.+++..||.|+.|++.-.+.+.....|. .++..+..+..++++..+ | ..++.|+++.
T Consensus 105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 22 2222355688999999999999998888887777776 566666666666777666 3 5578887754
No 386
>PHA02713 hypothetical protein; Provisional
Probab=97.53 E-value=0.0028 Score=51.51 Aligned_cols=156 Identities=6% Similarity=0.040 Sum_probs=82.1
Q ss_pred CCCeeEEEeccc-----eEEEEecCcceee--eeeeccCCceEEEcCCCCEEEEEecCC---------------------
Q 026679 25 VNDSFMSGSLDH-----SVRIWDLRVNACQ--GILRLRGRPTVAFDQQGLVFAVAMEAG--------------------- 76 (235)
Q Consensus 25 ~~~~l~s~~~d~-----~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------------- 76 (235)
+|+..+.||.++ ++..||..+++-. ..+........+..-++++.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 430 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS 430 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccc
Confidence 355666676653 4777887655322 222111111122233678888887542
Q ss_pred --eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC------CcEEEEEcCC-CceeeeeccCCCCCcc
Q 026679 77 --AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN------NNIYVLDAYG-GEKRCGFSLEPSPNTN 147 (235)
Q Consensus 77 --~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~-~~~~~~~~~~~~~~~i 147 (235)
.+..||..+.+......... ..... ++ ..-+++..+.|+.+ ..+..||..+ .+....-.+.......
T Consensus 431 ~~~ve~YDP~td~W~~v~~m~~--~r~~~-~~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 431 SNKVIRYDTVNNIWETLPNFWT--GTIRP-GV-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL 506 (557)
T ss_pred cceEEEECCCCCeEeecCCCCc--ccccC-cE-EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence 47778887755321111111 11111 12 22256666667653 2467899887 5554333333322222
Q ss_pred eeeEEeCCCcEEEEeCCCC--cEEEEEcCCCceeeeecCCC
Q 026679 148 TEATFTPDGQYVVSGSGDG--TLHAWNINTRNEVACWNGNI 186 (235)
Q Consensus 148 ~~~~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~ 186 (235)
..+.+ +++..++|+.+| .+..||..+.+-......|.
T Consensus 507 ~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 507 HTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred eeEEE--CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 22222 778889999888 67788887776554444443
No 387
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.53 E-value=0.023 Score=43.31 Aligned_cols=180 Identities=12% Similarity=0.158 Sum_probs=87.2
Q ss_pred eEEEeecCCCee-EEEeccc--eEEEEecCcceeeeeeeccCCc--eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCce
Q 026679 18 ISLCMSPVNDSF-MSGSLDH--SVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD 92 (235)
Q Consensus 18 ~~~~~~~~~~~l-~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 92 (235)
+.=+|.++|+.| +.+..|| .+.+.|+.+++..+........ ...++|+++.++-......+.-.|+++.+.
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~---- 114 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE---- 114 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E----
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE----
Confidence 334677788654 4454454 5677788888888777765432 377788888877666667888899988664
Q ss_pred eEeecCCCcceeEEEEc--cCCCeEEEecC----------------------CCcEEEEEcCCCceeeeeccCCCCCcce
Q 026679 93 TFLVGGDTAEVCDIKFS--NDGKSMLLTTT----------------------NNNIYVLDAYGGEKRCGFSLEPSPNTNT 148 (235)
Q Consensus 93 ~~~~~~~~~~v~~~~~~--~~~~~l~~~~~----------------------d~~i~~~d~~~~~~~~~~~~~~~~~~i~ 148 (235)
..........+-...|. .|+..++-.-. ...|...|+.+++....+.-. ..+.
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~---~wlg 191 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT---DWLG 191 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES---S-EE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC---cccc
Confidence 22222333334334453 35554433211 134777788888776555433 5577
Q ss_pred eeEEeCCC-cEEEEeCC---CCc-EEEEEcC-CCceeeeecCC--CcceeEEEeecCCCEEEEc
Q 026679 149 EATFTPDG-QYVVSGSG---DGT-LHAWNIN-TRNEVACWNGN--IGVVACLKWAPRRAMFVAA 204 (235)
Q Consensus 149 ~~~~~~~~-~~l~~~~~---dg~-i~v~d~~-~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~ 204 (235)
.+.|+|.. .+|+.|-+ +.. -+||-++ .+.....+..+ ...+..=-|.|||..|.--
T Consensus 192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~ 255 (386)
T PF14583_consen 192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYD 255 (386)
T ss_dssp EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEE
T ss_pred CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEE
Confidence 89999954 45555433 221 2455443 23322222222 2234444577888766553
No 388
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.52 E-value=0.028 Score=44.11 Aligned_cols=112 Identities=15% Similarity=0.254 Sum_probs=69.1
Q ss_pred EEEcCCCCEEEEEe-cCC----eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCC-----------c
Q 026679 60 VAFDQQGLVFAVAM-EAG----AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-----------N 123 (235)
Q Consensus 60 ~~~~~~~~~l~~~~-~dg----~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------~ 123 (235)
..++|++++++.+- ..| .++++|+.+++.. .-.+.. .....+.|.++++.|+....+. .
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l---~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL---PDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE---EEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc---CCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 67899999988763 334 5999999887431 111111 1122399999988877664332 3
Q ss_pred EEEEEcCCCcee--eeeccCCCCCcceeeEEeCCCcEEEEeC---CC-CcEEEEEcCCC
Q 026679 124 IYVLDAYGGEKR--CGFSLEPSPNTNTEATFTPDGQYVVSGS---GD-GTLHAWNINTR 176 (235)
Q Consensus 124 i~~~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d-g~i~v~d~~~~ 176 (235)
|+.|.+.+.... ..+...........+..++++++|+... .+ ..+++.|+..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 788888776543 3344333332256788999999987532 23 45888888764
No 389
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.0041 Score=48.60 Aligned_cols=139 Identities=13% Similarity=0.164 Sum_probs=93.0
Q ss_pred eEEEeccceEEEEecCcceeeeeeeccCC-ceEEEcCCCC-------EEEEEecCCeEEEEeccCCCCCCceeEeecCC-
Q 026679 29 FMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGL-------VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD- 99 (235)
Q Consensus 29 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~-------~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~- 99 (235)
|.++.....++-.|++.|+.+.....+.. +.+.+.|+.+ .-+.|-.+..|.-||.+-.....+ .....|
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl--~~~q~kq 426 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL--AVVQSKQ 426 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCccee--eeeeccc
Confidence 34555556688889999999999888775 5577777543 235677788999999885443211 111122
Q ss_pred ---CcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679 100 ---TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 173 (235)
Q Consensus 100 ---~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~ 173 (235)
.....|++-..+| ++++|+.+|.|++||- .+..-+ .-+++-..+|..+..+.+|++|++.+. .++.+.++
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AK-TAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAK-TALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhh-hcccccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 2334555555555 6999999999999996 433222 233455577999999999999877664 45666665
No 390
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.48 E-value=0.01 Score=45.17 Aligned_cols=166 Identities=12% Similarity=0.168 Sum_probs=85.3
Q ss_pred ecCcceeeeeeeccCCce-------EEEcCCCCEEEEEec-CC--eEEEEeccCCCCCCceeEeecCCC-cceeEEEEcc
Q 026679 42 DLRVNACQGILRLRGRPT-------VAFDQQGLVFAVAME-AG--AIKLFDSRSYDKGPFDTFLVGGDT-AEVCDIKFSN 110 (235)
Q Consensus 42 d~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~ 110 (235)
|..+|..+..+......+ -+|.++|+.|+.++. +| .+.+.|+.+++. ..+.... .......++|
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i-----~QLTdg~g~~~~g~~~s~ 90 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEI-----TQLTDGPGDNTFGGFLSP 90 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EE-----EE---SS-B-TTT-EE-T
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEE-----EECccCCCCCccceEEec
Confidence 566777776666555544 467888976666554 54 566667766553 2222222 2233466788
Q ss_pred CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEE--eCCCcEEEEeC----------------------CCC
Q 026679 111 DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF--TPDGQYVVSGS----------------------GDG 166 (235)
Q Consensus 111 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~----------------------~dg 166 (235)
+.+.++....+..|.-.|+.+.+....+..+.. ......| +.++..++-.- -..
T Consensus 91 ~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~--~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~ 168 (386)
T PF14583_consen 91 DDRALYYVKNGRSLRRVDLDTLEERVVYEVPDD--WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHC 168 (386)
T ss_dssp TSSEEEEEETTTEEEEEETTT--EEEEEE--TT--EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---E
T ss_pred CCCeEEEEECCCeEEEEECCcCcEEEEEECCcc--cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCc
Confidence 888887766677899999999887777766543 3333445 34566554221 122
Q ss_pred cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-----cc--eEEeeCCC
Q 026679 167 TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SV--LSFWIPNP 215 (235)
Q Consensus 167 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~--i~iw~~~~ 215 (235)
.|.-.|+.+|+....+. -...+..+.|+|...-+++-+ .. -+||-++.
T Consensus 169 ~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp EEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred eEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence 46667777777655444 345678899999665555443 22 48887653
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.45 E-value=0.024 Score=43.77 Aligned_cols=189 Identities=13% Similarity=0.126 Sum_probs=88.4
Q ss_pred eecCCCeeEEEec------cceEEEEecCcceeeeeeeccCCce-----EEEcCCCCEEEEEec----------------
Q 026679 22 MSPVNDSFMSGSL------DHSVRIWDLRVNACQGILRLRGRPT-----VAFDQQGLVFAVAME---------------- 74 (235)
Q Consensus 22 ~~~~~~~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~---------------- 74 (235)
.-|+|+.++++=. -|.+.+.|-++.+............ +.+.|..+.++++..
T Consensus 137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 137 CLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp E-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred ecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence 3467888777522 2457788887777777766543322 778888888888753
Q ss_pred ----CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc--CCCeEEE-ecCCCcEEEEEc-CCCcee--eeeccCC--
Q 026679 75 ----AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLL-TTTNNNIYVLDA-YGGEKR--CGFSLEP-- 142 (235)
Q Consensus 75 ----dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~-~~~d~~i~~~d~-~~~~~~--~~~~~~~-- 142 (235)
..++.+||+.+.+. .....+.........+.|.. +..+=++ +.-..+|..|-- ..++.. .......
T Consensus 217 ~~~yG~~l~vWD~~~r~~--~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKL--LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp HH-S--EEEEEETTTTEE--EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred cccccCeEEEEECCCCcE--eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 35899999988654 22333333333455666654 3444333 333555655543 333221 1111111
Q ss_pred --------C-------CCcceeeEEeCCCcEEEEe-CCCCcEEEEEcCCCc---eeeeec----------------CCCc
Q 026679 143 --------S-------PNTNTEATFTPDGQYVVSG-SGDGTLHAWNINTRN---EVACWN----------------GNIG 187 (235)
Q Consensus 143 --------~-------~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~---~~~~~~----------------~~~~ 187 (235)
- +.-|+.+.+|.|.++|... -.+|.|+.||+.+.. ++.++. .-.+
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~G 374 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRG 374 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCC
Confidence 0 2457889999999999655 458999999997632 222211 0112
Q ss_pred ceeEEEeecCCCEEEEcccceEEee
Q 026679 188 VVACLKWAPRRAMFVAASSVLSFWI 212 (235)
Q Consensus 188 ~v~~~~~~~~~~~l~~~~~~i~iw~ 212 (235)
...-+..|-||+.|....+-..-||
T Consensus 375 gPqMvqlS~DGkRlYvTnSLys~WD 399 (461)
T PF05694_consen 375 GPQMVQLSLDGKRLYVTNSLYSAWD 399 (461)
T ss_dssp ----EEE-TTSSEEEEE----HHHH
T ss_pred CCCeEEEccCCeEEEEEeecccccc
Confidence 3466888899998887754333343
No 392
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.39 E-value=0.02 Score=41.27 Aligned_cols=118 Identities=18% Similarity=0.245 Sum_probs=74.3
Q ss_pred ecCCCcceeEEEEccCCC-eEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcC
Q 026679 96 VGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 174 (235)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~ 174 (235)
+.+-...+..++|.|+.+ ++++....+.|..++. +|+.+..+.+.+. +....+++..++.++++.-.++.+.++++.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~-~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF-GDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC-CCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 344455699999999755 5556667888988886 5788888877653 457889998888888887778999999984
Q ss_pred CCce------eeeec-----CCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679 175 TRNE------VACWN-----GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 175 ~~~~------~~~~~-----~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~ 215 (235)
.... ...+. .+...+-.++|.|.+..|+.+- .-..+|.++.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 3211 11111 2445689999999877777665 3356666654
No 393
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.0062 Score=51.91 Aligned_cols=184 Identities=13% Similarity=0.107 Sum_probs=108.8
Q ss_pred EEEeecCCCeeEEEeccceEEEEecCcc-------e---------eeeeeeccC---CceEEEcCCCCEEEEEec--CCe
Q 026679 19 SLCMSPVNDSFMSGSLDHSVRIWDLRVN-------A---------CQGILRLRG---RPTVAFDQQGLVFAVAME--AGA 77 (235)
Q Consensus 19 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~---------~~~~~~~~~---~~~~~~~~~~~~l~~~~~--dg~ 77 (235)
.++.++.-..+++++..+.+.|+-...- . ....+..+. +..+...+|+...++... +-.
T Consensus 46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~ 125 (1405)
T KOG3630|consen 46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA 125 (1405)
T ss_pred hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence 3455555556666666676666643211 0 112222222 222566677665554443 347
Q ss_pred EEEEeccCCCCCCceeE-------eecCCCcceeEEEEccCC-CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCccee
Q 026679 78 IKLFDSRSYDKGPFDTF-------LVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE 149 (235)
Q Consensus 78 v~i~d~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~ 149 (235)
|..||++.......... ..........++.|+|.- ...++...|+.|.+..+........ . -.-....++
T Consensus 126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~-s-~p~t~~~Ta 203 (1405)
T KOG3630|consen 126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVT-S-FPVTNSQTA 203 (1405)
T ss_pred EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhc-c-cCcccceee
Confidence 88999986543221111 111122345678888853 3356667788888887653322211 1 122245899
Q ss_pred eEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC----CcceeEEEeecCCCEEEEcc
Q 026679 150 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN----IGVVACLKWAPRRAMFVAAS 205 (235)
Q Consensus 150 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~ 205 (235)
++|+|.|+.++.|-..|++.-|.. .++....+... ...|.++.|-....++++-+
T Consensus 204 v~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 204 VLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred EEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 999999999999999999998875 44433333221 36899999999888887765
No 394
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.044 Score=45.01 Aligned_cols=204 Identities=11% Similarity=0.093 Sum_probs=100.5
Q ss_pred hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeee----ccC--CceEEEcCCCCEEEEEecCC
Q 026679 3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR----LRG--RPTVAFDQQGLVFAVAMEAG 76 (235)
Q Consensus 3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~----~~~--~~~~~~~~~~~~l~~~~~dg 76 (235)
+|+++..+.-....+..+.|+.+ ..|+....||++.+|++- |..+.... ... +.-+.+..+| +++-..+|
T Consensus 72 sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g 147 (829)
T KOG2280|consen 72 SGQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNG--VAVLTVSG 147 (829)
T ss_pred cccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCc--eEEEecCC
Confidence 46667766655558889999975 467777899999999974 33322211 111 1113333344 33333344
Q ss_pred eEEEE-eccCCCCCCceeEeecCCCcceeEEEEccCCC---eEEEec-CCCcEEEEEcCCCceeeeeccCCCCCcceeeE
Q 026679 77 AIKLF-DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK---SMLLTT-TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT 151 (235)
Q Consensus 77 ~v~i~-d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~ 151 (235)
.+.+- +............ ....-+-.|-...+++. .++-.. ..+ ..++...... .+...+......+..+.
T Consensus 148 ~v~~i~~~~~~~~~~~~di--P~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~-~q~~~~~~~~~~~~ki~ 223 (829)
T KOG2280|consen 148 QVILINGVEEPKLRKMPDI--PYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR-VQLHALSWPNSSVVKIS 223 (829)
T ss_pred cEEEEcCCCcchhhhCCCC--CCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc-ccccccCCCCceEEEEE
Confidence 44433 2222111000000 01111112222222211 111111 000 0111111111 11112222235578899
Q ss_pred EeCCCcEEEEeCCCCcEEEEEcCCCceeeeec--CCCcceeEEEeecCCCEEEEcccceEEeeCCC
Q 026679 152 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--GNIGVVACLKWAPRRAMFVAASSVLSFWIPNP 215 (235)
Q Consensus 152 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~ 215 (235)
.||+.++|+.-...|.|.+-+....+....+. .| .+...++|..+...+++--..+.+....+
T Consensus 224 VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~-~~p~qm~WcgndaVvl~~e~~l~lvgp~g 288 (829)
T KOG2280|consen 224 VSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDH-DPPKQMAWCGNDAVVLSWEVNLMLVGPPG 288 (829)
T ss_pred EcCCcceEEEEecCCcEEEEecchhhhhhccCCCCC-CchHhceeecCCceEEEEeeeEEEEcCCC
Confidence 99999999999999999999987777766665 33 33447788766544443334444444333
No 395
>PHA02790 Kelch-like protein; Provisional
Probab=97.31 E-value=0.06 Score=43.21 Aligned_cols=180 Identities=6% Similarity=-0.075 Sum_probs=87.6
Q ss_pred CCeeEEEeccc-----eEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecC--CeEEEEeccCCCCCCceeEee
Q 026679 26 NDSFMSGSLDH-----SVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEA--GAIKLFDSRSYDKGPFDTFLV 96 (235)
Q Consensus 26 ~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~ 96 (235)
+..++.|+.++ .+..||..++.-...-.... .......-++.+.++|+.+ ..+..||..+.+..... .+
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~--~l 349 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMP--SL 349 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECC--CC
Confidence 44566776543 46678876654322221111 1112223477788888764 35777887654321111 11
Q ss_pred cCCCcceeEEEEccCCCeEEEecCC---CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679 97 GGDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 173 (235)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~ 173 (235)
....... ....-+|+..+.|+.+ ..+..||.++.+....-......... .+..-+++..+.|+ ...+||.
T Consensus 350 ~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~--~~~~~~~~IYv~GG---~~e~ydp 422 (480)
T PHA02790 350 LKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS--CALVFGRRLFLVGR---NAEFYCE 422 (480)
T ss_pred CCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc--eEEEECCEEEEECC---ceEEecC
Confidence 1111111 1122356766777754 34778998876654432222111111 12233666666664 4678888
Q ss_pred CCCceee--eecCCCcceeEEEeecCCCEEEEcc-------cceEEeeCCCC
Q 026679 174 NTRNEVA--CWNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPS 216 (235)
Q Consensus 174 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~iw~~~~~ 216 (235)
++.+-.. .+....... +++ .-+++..+.|+ ..+..||++..
T Consensus 423 ~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 7655432 222111111 222 23566666665 23667777654
No 396
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.31 E-value=0.0012 Score=45.88 Aligned_cols=142 Identities=14% Similarity=0.114 Sum_probs=72.6
Q ss_pred eEEEeccceEEEEecCcceeeee-eeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEE
Q 026679 29 FMSGSLDHSVRIWDLRVNACQGI-LRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK 107 (235)
Q Consensus 29 l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 107 (235)
+..-+.|+.|+-++++.-+.... -..+.. -...-.-+..+++|+.+|.|.+|....... .............+.+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e-~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~--~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDE-GQRVVTASAKLMVGTSDGAVYVFNWNLEGA--HSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhc-ceeecccCceEEeecccceEEEecCCccch--HHHhhhcccccceeccc
Confidence 33445677777666543221100 000000 022233456799999999999998763221 00111111111222222
Q ss_pred EccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe--CCCCcEEEEEcC
Q 026679 108 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG--SGDGTLHAWNIN 174 (235)
Q Consensus 108 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~v~d~~ 174 (235)
--.++.+..+++.+|.|+.|+...++.+.....+.. .++.....+..+++++.+ +.|..++.|++.
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-ESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccC-CCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 233556788999999999999987776543332221 223333344444455544 555555555553
No 397
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.29 E-value=0.037 Score=40.28 Aligned_cols=158 Identities=11% Similarity=0.069 Sum_probs=91.5
Q ss_pred CceEEEcCCCCEEEEEe---cCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEE-cCCC
Q 026679 57 RPTVAFDQQGLVFAVAM---EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD-AYGG 132 (235)
Q Consensus 57 ~~~~~~~~~~~~l~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d-~~~~ 132 (235)
....++++++..++... ....+.++...... .... ....+....|++++...+....+....++. ...+
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~-----~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV-----RPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc-----eeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 34489999998877665 23345554433211 1111 223677789999977666666566666663 3333
Q ss_pred ceee-eeccCCCCCcceeeEEeCCCcEEEEeC---CCCcEEEEEcC---CC------ceeeeecCCCcceeEEEeecCCC
Q 026679 133 EKRC-GFSLEPSPNTNTEATFTPDGQYVVSGS---GDGTLHAWNIN---TR------NEVACWNGNIGVVACLKWAPRRA 199 (235)
Q Consensus 133 ~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~v~d~~---~~------~~~~~~~~~~~~v~~~~~~~~~~ 199 (235)
+... ..........|..+.+||||..++.-. .++.|.+--+. .+ ............+..+.|.+++.
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 3221 122222212799999999999887654 35777776543 23 11111222346889999999999
Q ss_pred EEEEcc---cceEE-eeCCCCCCCCC
Q 026679 200 MFVAAS---SVLSF-WIPNPSSNSTD 221 (235)
Q Consensus 200 ~l~~~~---~~i~i-w~~~~~~~~~~ 221 (235)
+++.+. +.+.. ..........+
T Consensus 179 L~V~~~~~~~~~~~~v~~dG~~~~~l 204 (253)
T PF10647_consen 179 LVVLGRSAGGPVVRLVSVDGGPSTPL 204 (253)
T ss_pred EEEEeCCCCCceeEEEEccCCccccc
Confidence 888876 22332 44555444443
No 398
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.28 E-value=0.043 Score=40.85 Aligned_cols=154 Identities=14% Similarity=0.158 Sum_probs=73.8
Q ss_pred ccceeEEEeecCCCeeEEEeccceEEEEecCc--ceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEecc-CCCCCC
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRV--NACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSR-SYDKGP 90 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~-~~~~~~ 90 (235)
.+.+..+.-+++|+++++++.-....-||... .++...........+.|.|++.+.+.+ ..|.++.=+.. ..+.-.
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence 35678888889999888887665566777432 122222223334459999998776654 78888877611 111000
Q ss_pred ceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec-cCCCCCcceeeEEeCCCcEEEEeCCCCcEE
Q 026679 91 FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDGTLH 169 (235)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 169 (235)
............+..++|.++++..++++ .|.+ +.....|+.-+... ...-+.....+.|.++.+-++.| .+|.|-
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll 299 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLL 299 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEE
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEE
Confidence 00111111223478999999877666554 4444 33444454333322 22233457788887765555555 577665
Q ss_pred EE
Q 026679 170 AW 171 (235)
Q Consensus 170 v~ 171 (235)
-|
T Consensus 300 ~~ 301 (302)
T PF14870_consen 300 RY 301 (302)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 399
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.02 Score=39.56 Aligned_cols=173 Identities=13% Similarity=0.149 Sum_probs=94.3
Q ss_pred CCCeeEEEecc--ceEEEEecCcceeeeeeeccCCceE--EEcCCCC-EEEEEecCCeEEEEeccCCCCCCceeEeecCC
Q 026679 25 VNDSFMSGSLD--HSVRIWDLRVNACQGILRLRGRPTV--AFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD 99 (235)
Q Consensus 25 ~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~-~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~ 99 (235)
+|.++.+.+.- ..|++||+++++.+...+....... -...-+. .....-.+|.-..+|.++.+... .+...
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg--~~~y~-- 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG--RFSYE-- 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhc--ccccC--
Confidence 34555555543 3699999999987776655421210 0111222 33344568888889988765411 22221
Q ss_pred CcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCC---cceeeEEeCCCcEEEEeCCCCcEEEEEcCCC
Q 026679 100 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN---TNTEATFTPDGQYVVSGSGDGTLHAWNINTR 176 (235)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 176 (235)
+.-..+ ..|+..|+.+.....++.-|..+-............. .++.+.|- +|...|-.-.+..|...|..+|
T Consensus 131 -GeGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 131 -GEGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred -Ccceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence 223333 3466667777777777777766543332222221112 22334442 5555555444555666666676
Q ss_pred ceeeee------------cCCCcceeEEEeecCC-CEEEEcc
Q 026679 177 NEVACW------------NGNIGVVACLKWAPRR-AMFVAAS 205 (235)
Q Consensus 177 ~~~~~~------------~~~~~~v~~~~~~~~~-~~l~~~~ 205 (235)
+.+..+ ..+......|++.|++ +++++|-
T Consensus 207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred cEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 655443 2244567889999987 5555553
No 400
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.25 E-value=0.075 Score=43.13 Aligned_cols=187 Identities=11% Similarity=0.027 Sum_probs=108.0
Q ss_pred CCeeEEEeccceEEEEecCcceeeeeeeccCCc-e------------EEEcCCCCEEEEEecCCeEEEEeccCCCCCCce
Q 026679 26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-T------------VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD 92 (235)
Q Consensus 26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~------------~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 92 (235)
+..++.++.++.|.-.|.++++.+..+...... . +++ .+..++.++.++.+..+|.++++..-
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W-- 144 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVW-- 144 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEe--
Confidence 456777778889999999999888776543210 0 111 23567788889999999998877521
Q ss_pred eEeecCCCcceeEEEEcc---CCCeEEEecC------CCcEEEEEcCCCceeeeeccCCCC-------------------
Q 026679 93 TFLVGGDTAEVCDIKFSN---DGKSMLLTTT------NNNIYVLDAYGGEKRCGFSLEPSP------------------- 144 (235)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~---~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~------------------- 144 (235)
......+... ..+.-+| ++ .++++.. +|.|..+|.++|+.+-.+......
T Consensus 145 ~~~~~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 145 SKKNGDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred eccccccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence 1111111100 0111112 33 4555432 688999999999877554332111
Q ss_pred -----------CcceeeEEeCCCcEEEEeCCC-----C-----------cEEEEEcCCCceeeeecCCCccee-------
Q 026679 145 -----------NTNTEATFTPDGQYVVSGSGD-----G-----------TLHAWNINTRNEVACWNGNIGVVA------- 190 (235)
Q Consensus 145 -----------~~i~~~~~~~~~~~l~~~~~d-----g-----------~i~v~d~~~~~~~~~~~~~~~~v~------- 190 (235)
..-..+++.|...+++.+..+ + .|.-.|+++|+..-.++.....++
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~ 302 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE 302 (527)
T ss_pred CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence 011234677766677665522 2 577788899998766653222111
Q ss_pred --EEEeecCCC---EEEEcc--cceEEeeCCCCCC
Q 026679 191 --CLKWAPRRA---MFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 191 --~~~~~~~~~---~l~~~~--~~i~iw~~~~~~~ 218 (235)
-+....+|+ .++.+. |.+.+.|-++++.
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 122224665 566666 6677778776654
No 401
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.25 E-value=0.041 Score=40.07 Aligned_cols=150 Identities=19% Similarity=0.248 Sum_probs=89.4
Q ss_pred ceeEEEeecCCCeeEEEe---ccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEe-ccCCCCCCc
Q 026679 16 RVISLCMSPVNDSFMSGS---LDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFD-SRSYDKGPF 91 (235)
Q Consensus 16 ~v~~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d-~~~~~~~~~ 91 (235)
.+.+.+++++++.++... ....++++... +...............|++++...+....+...+++. ...+.....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~-~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG-GPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC-CcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 688999999998777655 33445555432 2222223444445588999988877777677767664 233222111
Q ss_pred eeEeecCCCcceeEEEEccCCCeEEEec---CCCcEEEEEcCC---C---ceeeeecc-CCCCCcceeeEEeCCCcEEEE
Q 026679 92 DTFLVGGDTAEVCDIKFSNDGKSMLLTT---TNNNIYVLDAYG---G---EKRCGFSL-EPSPNTNTEATFTPDGQYVVS 161 (235)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~~d~~~---~---~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~ 161 (235)
..........|..+.++|||..++... .++.|.+--+.. + ........ ......+..+.|.+++.+++.
T Consensus 104 -~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 104 -EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred -EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 112222222899999999999888766 356677665432 2 00011111 122356889999999998877
Q ss_pred eCCCCc
Q 026679 162 GSGDGT 167 (235)
Q Consensus 162 ~~~dg~ 167 (235)
+...+.
T Consensus 183 ~~~~~~ 188 (253)
T PF10647_consen 183 GRSAGG 188 (253)
T ss_pred eCCCCC
Confidence 665443
No 402
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.22 E-value=0.016 Score=46.09 Aligned_cols=117 Identities=13% Similarity=0.197 Sum_probs=74.4
Q ss_pred CCCcceeEEEEccC----CCeEEEecCCCcEEEEEcCC-----CceeeeeccC---CCCCcceeeEEeCCCcEEEEeCCC
Q 026679 98 GDTAEVCDIKFSND----GKSMLLTTTNNNIYVLDAYG-----GEKRCGFSLE---PSPNTNTEATFTPDGQYVVSGSGD 165 (235)
Q Consensus 98 ~~~~~v~~~~~~~~----~~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d 165 (235)
+.-..|..+.|.|- ...|++.-....|.+|.+.. ++.+.....+ ..+--...+.|+|....|++-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 34467899999984 33577777888999999862 2222211111 111223457899998888766554
Q ss_pred CcEEEEEcC--CCceeeeecCCCcceeEEEeecCCCEEEEccc-c--eEEeeCCC
Q 026679 166 GTLHAWNIN--TRNEVACWNGNIGVVACLKWAPRRAMFVAASS-V--LSFWIPNP 215 (235)
Q Consensus 166 g~i~v~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~--i~iw~~~~ 215 (235)
..=.+++++ +.+....++ ..+.|.|.+|.+||+.|+.+-| . -+|||-..
T Consensus 134 dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 443456654 333334454 4578999999999999888863 3 56776543
No 403
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.18 E-value=0.092 Score=42.64 Aligned_cols=154 Identities=11% Similarity=0.117 Sum_probs=92.0
Q ss_pred CCeeEEEeccceEEEEecCcceeeeeeeccCCc---eEEEcC--CCCEEEEEec------CCeEEEEeccCCCCCCceeE
Q 026679 26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP---TVAFDQ--QGLVFAVAME------AGAIKLFDSRSYDKGPFDTF 94 (235)
Q Consensus 26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~--~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~ 94 (235)
+..++.++.|+.+.-.|.++|+.+......... .+.-+| .+..++++.. +|.|..+|.++++..-....
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 346777888999999999999887765532211 111122 1234444432 68898888887664111000
Q ss_pred eecC--------------------------C-Ccce-eEEEEccCCCeEEEecCC-----C-----------cEEEEEcC
Q 026679 95 LVGG--------------------------D-TAEV-CDIKFSNDGKSMLLTTTN-----N-----------NIYVLDAY 130 (235)
Q Consensus 95 ~~~~--------------------------~-~~~v-~~~~~~~~~~~l~~~~~d-----~-----------~i~~~d~~ 130 (235)
.-.. + ...+ ..+++.|+..+++.+..+ + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 0000 0 0111 134666666666665521 1 58888999
Q ss_pred CCceeeeeccCCCCC-------cceeeEEeCCCc---EEEEeCCCCcEEEEEcCCCcee
Q 026679 131 GGEKRCGFSLEPSPN-------TNTEATFTPDGQ---YVVSGSGDGTLHAWNINTRNEV 179 (235)
Q Consensus 131 ~~~~~~~~~~~~~~~-------~i~~~~~~~~~~---~l~~~~~dg~i~v~d~~~~~~~ 179 (235)
+|+..-.++...|.. ...-+.+..+|+ .++.+..+|.+++.|.++|+.+
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 999887776655431 111122334666 7789999999999999999876
No 404
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.13 E-value=0.039 Score=45.10 Aligned_cols=109 Identities=13% Similarity=0.180 Sum_probs=72.0
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEc--cCCCeEEEecCCCcEEEEEcC-------
Q 026679 60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS--NDGKSMLLTTTNNNIYVLDAY------- 130 (235)
Q Consensus 60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~~d~~------- 130 (235)
+.-+.-++..++-.....+.|||.+..... ..........|.++.|. |+++.+++.+..+.|.+|--.
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE---~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLE---YEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEE---EeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 445555565555556678999999876531 11112456789999995 589999999999999998642
Q ss_pred --CCceeeeeccCCCC-CcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679 131 --GGEKRCGFSLEPSP-NTNTEATFTPDGQYVVSGSGDGTLHAWNI 173 (235)
Q Consensus 131 --~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~v~d~ 173 (235)
+...+..+....+. .+|.+..|.++|.+++.++ +.+.|+|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 11233333333332 5688999999998776554 35777764
No 405
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.13 E-value=0.11 Score=44.22 Aligned_cols=113 Identities=10% Similarity=0.058 Sum_probs=74.5
Q ss_pred ceeEEEEccC-CCeEEEecC----------CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEE
Q 026679 102 EVCDIKFSND-GKSMLLTTT----------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA 170 (235)
Q Consensus 102 ~v~~~~~~~~-~~~l~~~~~----------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v 170 (235)
.+.++.|..| +.++++|+. .|.|.+|....++.+....-..-.+.+.++.. -+|++||.- ...|++
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrL 852 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRL 852 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEE
Confidence 3455568777 666777653 57888888877333332222222233433322 166666554 447999
Q ss_pred EEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679 171 WNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 217 (235)
Q Consensus 171 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~ 217 (235)
|++.+.+.+..-..+..++..+...-.+..++.|+ +.+.+..++..+
T Consensus 853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 99988877777677888899999999999999998 777666665443
No 406
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.04 E-value=0.043 Score=39.99 Aligned_cols=117 Identities=15% Similarity=0.246 Sum_probs=87.6
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCc
Q 026679 98 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 177 (235)
Q Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~ 177 (235)
+....+.++.|+|+.+.|++......-.++=-..|+.+..+.+..- .....+.+..+|++.++--.++.+.++.+....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 4445699999999999999988887777777778999988887764 335678899999999888889999998876543
Q ss_pred eeeeec---------CC-CcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679 178 EVACWN---------GN-IGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 178 ~~~~~~---------~~-~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~ 215 (235)
.+.... .+ +.....++|.|....+..+- .=+.||.++.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 221111 12 45678999999888888776 3377776653
No 407
>PHA03098 kelch-like protein; Provisional
Probab=96.94 E-value=0.064 Score=43.68 Aligned_cols=148 Identities=11% Similarity=0.090 Sum_probs=73.4
Q ss_pred CCCeeEEEecc-----ceEEEEecCcceeee--eeeccCCceEEEcCCCCEEEEEecC------CeEEEEeccCCCCCCc
Q 026679 25 VNDSFMSGSLD-----HSVRIWDLRVNACQG--ILRLRGRPTVAFDQQGLVFAVAMEA------GAIKLFDSRSYDKGPF 91 (235)
Q Consensus 25 ~~~~l~s~~~d-----~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~ 91 (235)
++..++.||.+ ..+..||..+++-.. .+........+..-++++++.|+.+ ..+..||+.+......
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 45566667654 246677776553221 1111111112223467777777732 4678889876543221
Q ss_pred eeEeecCCCcceeEEEEccCCCeEEEecCC--------CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC
Q 026679 92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTN--------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 163 (235)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 163 (235)
.... ..... .++ ...++..++.|+.+ ..+.+||..+++....-...........+. -+++.++.|+
T Consensus 422 ~~~p--~~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG 495 (534)
T PHA03098 422 SPLP--ISHYG-GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGG 495 (534)
T ss_pred CCCC--ccccC-ceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcC
Confidence 1111 01111 112 22355666666542 238899988776543322221111111222 2677777777
Q ss_pred CC-----CcEEEEEcCCCce
Q 026679 164 GD-----GTLHAWNINTRNE 178 (235)
Q Consensus 164 ~d-----g~i~v~d~~~~~~ 178 (235)
.+ ..+.+||..+.+-
T Consensus 496 ~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 496 DKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CcCCcccceeEEEeCCCCEE
Confidence 54 4678888776543
No 408
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.07 Score=41.45 Aligned_cols=138 Identities=12% Similarity=0.122 Sum_probs=90.3
Q ss_pred CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee--eccCC
Q 026679 65 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG--FSLEP 142 (235)
Q Consensus 65 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~ 142 (235)
|.+..+.+...|.+.-|.+..........+... ..++|.++.|++|.+.+++--.+.+|.+++....+.... .+...
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~-d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~ 110 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMD-DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT 110 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeec-CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc
Confidence 444455555566677777765543333333333 346999999999999999999999999999754433222 22233
Q ss_pred CCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC-CceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679 143 SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRAMFVAAS 205 (235)
Q Consensus 143 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 205 (235)
....|....|+.+ .-+|.-...| +-+|.... .+.+...+.|...|.-..|.++-+.++-++
T Consensus 111 k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 111 KNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred CcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 3345888999876 4555555444 56666543 344555667778888889999887766554
No 409
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.88 E-value=0.086 Score=37.27 Aligned_cols=137 Identities=14% Similarity=0.119 Sum_probs=80.4
Q ss_pred cceeEEEeecCCCeeEEEec---------cceEEEEecCcceeeeeeeccCC-ceEEEcCCCCEEEEE-ecCCeEEEEe-
Q 026679 15 ERVISLCMSPVNDSFMSGSL---------DHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAVA-MEAGAIKLFD- 82 (235)
Q Consensus 15 ~~v~~~~~~~~~~~l~s~~~---------d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~~dg~v~i~d- 82 (235)
...+.-..+|+|++++-.-. .|.++.|-.. ++.......-.+ +.++|+.+.+.+..- +.+-+|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 34455567788887432211 2344454331 122222221222 238898877766554 4566777777
Q ss_pred -ccCCCCCC-ceeEeecC----CCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC
Q 026679 83 -SRSYDKGP-FDTFLVGG----DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 154 (235)
Q Consensus 83 -~~~~~~~~-~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 154 (235)
..++.... ...+.+.. ..-..-.++...+|+..++.-..++|..+|..+|+.+..+.++. ..+++++|--
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt--~qitsccFgG 263 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPT--PQITSCCFGG 263 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCC--CceEEEEecC
Confidence 55443211 11222221 11112345567788888888889999999999999999998875 4499999953
No 410
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.87 E-value=0.047 Score=42.98 Aligned_cols=145 Identities=10% Similarity=0.095 Sum_probs=89.6
Q ss_pred CCCee-EEEeccceEEEEecCcceeeeeeeccCCceEEEcCCC-------CEEEEEecCCeEEEEeccCCCCCCceeEee
Q 026679 25 VNDSF-MSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQG-------LVFAVAMEAGAIKLFDSRSYDKGPFDTFLV 96 (235)
Q Consensus 25 ~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 96 (235)
+.++| ..|+....++-.|++.|+.+.....+...++.+.|.. ..-++|-.+..|.-.|.+-... .+.....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN-Ki~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN-KIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCC-ceeeeee
Confidence 33443 3455566777788889999999998887788888853 2345566666676667664331 1111111
Q ss_pred c--CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcC
Q 026679 97 G--GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 174 (235)
Q Consensus 97 ~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~ 174 (235)
. .......+..- ....++++++..|.|++||--...... -++.-...|..+..+.+|+++++.+.. ++.+-|++
T Consensus 557 KdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKt--alP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 557 KDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKT--ALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred hhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhh--cCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 0 01112222222 244589999999999999954333222 233344568889999999998877654 56676764
No 411
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.75 E-value=0.18 Score=39.03 Aligned_cols=146 Identities=14% Similarity=0.186 Sum_probs=76.9
Q ss_pred cceeEEEeecCCCeeEEEe-----------ccc-eEEEEecCc--cee--eeeeec-cC-CceEEEcCCCCEEEEEecCC
Q 026679 15 ERVISLCMSPVNDSFMSGS-----------LDH-SVRIWDLRV--NAC--QGILRL-RG-RPTVAFDQQGLVFAVAMEAG 76 (235)
Q Consensus 15 ~~v~~~~~~~~~~~l~s~~-----------~d~-~i~vwd~~~--~~~--~~~~~~-~~-~~~~~~~~~~~~l~~~~~dg 76 (235)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++. ...+.. -. ...+++.+++ +++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3456889999998777643 223 677776432 322 122221 12 2338888888 444 44443
Q ss_pred eEEEEeccCCCCC--CceeE--eecC----CCcceeEEEEccCCCeEEEecCC-------------------CcEEEEEc
Q 026679 77 AIKLFDSRSYDKG--PFDTF--LVGG----DTAEVCDIKFSNDGKSMLLTTTN-------------------NNIYVLDA 129 (235)
Q Consensus 77 ~v~i~d~~~~~~~--~~~~~--~~~~----~~~~v~~~~~~~~~~~l~~~~~d-------------------~~i~~~d~ 129 (235)
..++.|....... ..... .+.. +......++|.|||.+.++.+.. +.|..++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334354332111 11111 1111 13447789999999866654421 44666665
Q ss_pred CCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679 130 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 165 (235)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (235)
..++.. .+. ... .....++|+|+|+++++-..+
T Consensus 172 dg~~~e-~~a-~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGKLR-VVA-HGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCeEE-EEe-cCc-CCCccceECCCCCEEEEccCC
Confidence 544432 222 222 335679999999988765433
No 412
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.68 E-value=0.13 Score=43.15 Aligned_cols=77 Identities=19% Similarity=0.247 Sum_probs=52.4
Q ss_pred CcceeEEEEccCCCeEEEecCCCcEEEEEcCC---------Cce--ee-eec------cCCCCCcceeeEEeCC---CcE
Q 026679 100 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG---------GEK--RC-GFS------LEPSPNTNTEATFTPD---GQY 158 (235)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---------~~~--~~-~~~------~~~~~~~i~~~~~~~~---~~~ 158 (235)
...|..+.++|+|.+++..+..|...+.=.+. ++. .+ .+. .......|..+.|+|. +..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 35688999999999999988866444332221 111 11 111 1123356889999996 588
Q ss_pred EEEeCCCCcEEEEEcCCC
Q 026679 159 VVSGSGDGTLHAWNINTR 176 (235)
Q Consensus 159 l~~~~~dg~i~v~d~~~~ 176 (235)
|++-+.|+.+++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999753
No 413
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.67 E-value=0.3 Score=40.67 Aligned_cols=110 Identities=9% Similarity=0.053 Sum_probs=68.4
Q ss_pred eeEEEEcc--CCCeEEEecCCCcEEEEEcCC-------C----ce-------eeeeccCCCCCcceeeEEe--CCCcEEE
Q 026679 103 VCDIKFSN--DGKSMLLTTTNNNIYVLDAYG-------G----EK-------RCGFSLEPSPNTNTEATFT--PDGQYVV 160 (235)
Q Consensus 103 v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~-------~----~~-------~~~~~~~~~~~~i~~~~~~--~~~~~l~ 160 (235)
|+.+.... +.+.|+++.+||.|.+|...+ . .. ..-+... -...+.+++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 44443332 456788999999999997521 0 00 0011111 12457788988 7888999
Q ss_pred EeCCCCcEEEEEcCCC--ceeee-ecCCCcceeEEEeecCC-----C-EEEEcc--cceEEeeC
Q 026679 161 SGSGDGTLHAWNINTR--NEVAC-WNGNIGVVACLKWAPRR-----A-MFVAAS--SVLSFWIP 213 (235)
Q Consensus 161 ~~~~dg~i~v~d~~~~--~~~~~-~~~~~~~v~~~~~~~~~-----~-~l~~~~--~~i~iw~~ 213 (235)
+++....|.||-.... +.... -..+...|.+|+|-++. . .+++++ |.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999888888765432 11111 11255678999998743 2 666666 88777776
No 414
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.65 E-value=0.22 Score=38.93 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=86.2
Q ss_pred CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc----CCCeEEEecCCCcEEEEEcCCC--c-----
Q 026679 65 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN----DGKSMLLTTTNNNIYVLDAYGG--E----- 133 (235)
Q Consensus 65 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~~~d~~~~--~----- 133 (235)
+...+++|+..|.++||+.......+........-..+|..+..-+ .....++.-.-..+.+|.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 3468999999999999998665544333333444456777776532 2223333455677888887321 1
Q ss_pred e--eeeeccCCCCCcceeeEEeCC-----CcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-
Q 026679 134 K--RCGFSLEPSPNTNTEATFTPD-----GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS- 205 (235)
Q Consensus 134 ~--~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 205 (235)
. +....-+.-......++.-|- ..+|++=+.||.+.+|+-+.......+.. ---..-+.+.|....+++++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 1 111111111122344444442 35788889999999999765443333332 22234467788777777776
Q ss_pred -cceEEeeCC
Q 026679 206 -SVLSFWIPN 214 (235)
Q Consensus 206 -~~i~iw~~~ 214 (235)
..+..|.+.
T Consensus 195 s~~l~~Yky~ 204 (418)
T PF14727_consen 195 SWTLECYKYQ 204 (418)
T ss_pred ceeEEEecHH
Confidence 457777764
No 415
>PHA02790 Kelch-like protein; Provisional
Probab=96.65 E-value=0.18 Score=40.60 Aligned_cols=144 Identities=10% Similarity=-0.019 Sum_probs=70.2
Q ss_pred CCCeeEEEecc--ceEEEEecCcceeee--eeeccCCceEEEcCCCCEEEEEecCC---eEEEEeccCCCCCCceeEeec
Q 026679 25 VNDSFMSGSLD--HSVRIWDLRVNACQG--ILRLRGRPTVAFDQQGLVFAVAMEAG---AIKLFDSRSYDKGPFDTFLVG 97 (235)
Q Consensus 25 ~~~~l~s~~~d--~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~ 97 (235)
++...+.|+.+ ..+..||..+++-.. .+........+..-++++.+.|+.++ .+..||.++........ +.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~--m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS--TY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC--CC
Confidence 45556666653 346777765543221 22111111123334778888887653 46778877644311111 10
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC-----CcEEEEE
Q 026679 98 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-----GTLHAWN 172 (235)
Q Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~v~d 172 (235)
...... ++ ..-++...+.| |.+.+||..+++....-.+........ ++ .-+++..+.|+.+ ..+.+||
T Consensus 396 ~~r~~~-~~-~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~-~~-v~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 396 YPHYKS-CA-LVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPE-LI-IVDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred Cccccc-eE-EEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccE-EE-EECCEEEEECCcCCCcccceEEEEE
Confidence 011111 12 22355555555 357789988776554333322111222 22 2367777888754 3466677
Q ss_pred cCCCc
Q 026679 173 INTRN 177 (235)
Q Consensus 173 ~~~~~ 177 (235)
..+.+
T Consensus 469 ~~~~~ 473 (480)
T PHA02790 469 NRTYS 473 (480)
T ss_pred CCCCe
Confidence 65543
No 416
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.029 Score=48.14 Aligned_cols=141 Identities=13% Similarity=0.090 Sum_probs=88.1
Q ss_pred ceeEEEeecCCCee--EEEeccceEEEEecCcceeee-----eeecc--------CCceEEEcCCC-CEEEEEecCCeEE
Q 026679 16 RVISLCMSPVNDSF--MSGSLDHSVRIWDLRVNACQG-----ILRLR--------GRPTVAFDQQG-LVFAVAMEAGAIK 79 (235)
Q Consensus 16 ~v~~~~~~~~~~~l--~s~~~d~~i~vwd~~~~~~~~-----~~~~~--------~~~~~~~~~~~-~~l~~~~~dg~v~ 79 (235)
+|..+...+|+... +..+.+-.|..||+++-.... .+..+ -..++.|.|.- ...+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 55666666776543 334445578899987542211 11111 11237777743 4567778899998
Q ss_pred EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCC--CCCcceeeEEeCCCc
Q 026679 80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP--SPNTNTEATFTPDGQ 157 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~ 157 (235)
+..+..... ...........++++|+|.|+.++.|-..|++.-|... .+....+.... ....|.+++|-....
T Consensus 182 V~~~~~~~~----~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 182 VKSTKQLAQ----NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhh----hhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEeccee
Confidence 887764332 11112334578999999999999999999999999754 33322222211 136799999988777
Q ss_pred EEEE
Q 026679 158 YVVS 161 (235)
Q Consensus 158 ~l~~ 161 (235)
++++
T Consensus 257 flvv 260 (1405)
T KOG3630|consen 257 FLVV 260 (1405)
T ss_pred EEEE
Confidence 7654
No 417
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.65 E-value=0.011 Score=29.47 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=26.0
Q ss_pred CcceeeEEeCCC---cEEEEeCCCCcEEEEEcCC
Q 026679 145 NTNTEATFTPDG---QYVVSGSGDGTLHAWNINT 175 (235)
Q Consensus 145 ~~i~~~~~~~~~---~~l~~~~~dg~i~v~d~~~ 175 (235)
+.++++.|+|+. .+|+.+-..|.+.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358899999854 5888888889999999985
No 418
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=96.63 E-value=0.045 Score=42.49 Aligned_cols=175 Identities=14% Similarity=0.145 Sum_probs=101.8
Q ss_pred hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeee--eeeccCCc-------eEEEcCCCCEEEEEec
Q 026679 4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG--ILRLRGRP-------TVAFDQQGLVFAVAME 74 (235)
Q Consensus 4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~-------~~~~~~~~~~l~~~~~ 74 (235)
++.++.+......|..+-..|||+.++.-+. ..+.++++.+..... ........ .+..-..|..++++..
T Consensus 210 ~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 210 QEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 4455556666778888999999998876655 578888886543211 11111110 0222345677888899
Q ss_pred CCeEEEE-eccCCCCCCceeEe-ecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEE
Q 026679 75 AGAIKLF-DSRSYDKGPFDTFL-VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 152 (235)
Q Consensus 75 dg~v~i~-d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~ 152 (235)
||-|.-| |.+....+...... ..-...++..+.-..+.+-+++-+.+|++..+.....+.+-.-..- ..+.-+++
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~---~~~~~~~~ 365 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY---QAPQLVAM 365 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh---cCcceeee
Confidence 9988776 55544432221111 1111233333322223445677777888888765444333211111 23566899
Q ss_pred eCCCcEEEEeCCCCcEEEEEcCCCceeeeec
Q 026679 153 TPDGQYVVSGSGDGTLHAWNINTRNEVACWN 183 (235)
Q Consensus 153 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 183 (235)
||.+.+|++-. .|.|+++.+++..+.-++.
T Consensus 366 Sp~~~~Ll~e~-~gki~~~~l~Nr~Peisws 395 (733)
T COG4590 366 SPNQAYLLSED-QGKIRLAQLENRNPEISWS 395 (733)
T ss_pred Ccccchheeec-CCceEEEEecCCCCCccHH
Confidence 99999988754 5679999998776655543
No 419
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.61 E-value=0.058 Score=41.98 Aligned_cols=83 Identities=17% Similarity=0.248 Sum_probs=57.5
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEe----CC----------------Cc
Q 026679 98 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT----PD----------------GQ 157 (235)
Q Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~----~~----------------~~ 157 (235)
.....+.+++.+|.+++.++...-|+|.++|+.++..++.++.-... .+.|- +. ..
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA----qc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA----QCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc----eEEEEEeecccccccccccccCCCCcceE
Confidence 44566889999999998888888899999999988877665432110 01110 00 11
Q ss_pred E-EEEeCCCCcEEEEEcCCCceeeeecC
Q 026679 158 Y-VVSGSGDGTLHAWNINTRNEVACWNG 184 (235)
Q Consensus 158 ~-l~~~~~dg~i~v~d~~~~~~~~~~~~ 184 (235)
+ ++-+-..|.|.||++++|..+..+..
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 2 34566789999999999988877653
No 420
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.52 E-value=0.32 Score=39.20 Aligned_cols=153 Identities=8% Similarity=0.061 Sum_probs=86.4
Q ss_pred cceeEEEeecCCCe-eEEEe--ccceEEEEecCcceeeeeeeccCCceEEEcCC----CCEEEEEecCCeEEEEeccCCC
Q 026679 15 ERVISLCMSPVNDS-FMSGS--LDHSVRIWDLRVNACQGILRLRGRPTVAFDQQ----GLVFAVAMEAGAIKLFDSRSYD 87 (235)
Q Consensus 15 ~~v~~~~~~~~~~~-l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~dg~v~i~d~~~~~ 87 (235)
.+|..++|. ||+. +.|.- ..|.+++=|- ..+. +......+.|.|- ...+++.-....|.+|.+....
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viG--qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIG--QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEee--ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 478899997 4554 44432 2333333221 1111 2223344888873 3355666667899999986321
Q ss_pred --CCCceeEeecC--CCcc--eeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679 88 --KGPFDTFLVGG--DTAE--VCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 161 (235)
Q Consensus 88 --~~~~~~~~~~~--~~~~--v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 161 (235)
.........-. ...+ -..+.|+|....|++-.....-.+++++........... ..+.|.|.+|.+||+.|++
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEE
Confidence 11111111111 1112 235779999888887776665567777655443333343 3367999999999998865
Q ss_pred eC-CCCcEEEEEcC
Q 026679 162 GS-GDGTLHAWNIN 174 (235)
Q Consensus 162 ~~-~dg~i~v~d~~ 174 (235)
+- ..=.-++||-.
T Consensus 173 AvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 173 AVGSSLHSYIWDSA 186 (671)
T ss_pred EeCCeEEEEEecCc
Confidence 53 23346788853
No 421
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.48 E-value=0.00067 Score=52.32 Aligned_cols=138 Identities=12% Similarity=0.191 Sum_probs=97.9
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEE-ecCCCcEEEEEcCCCceeeee
Q 026679 60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL-TTTNNNIYVLDAYGGEKRCGF 138 (235)
Q Consensus 60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~ 138 (235)
..|-|.+.-++.++.+..+..||-.... ......+.....++|..++..++. +-..+.+.+||+.+.... .+
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~------~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qL 112 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQV------ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QL 112 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcce------ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HH
Confidence 6788888779999888888888865422 122233455667888888776554 556889999999765432 22
Q ss_pred ccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679 139 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205 (235)
Q Consensus 139 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 205 (235)
..... ..-.-+.|++.+..++.+...|.+.+++..+.+.+...-.|..++++++|.+.+..+...+
T Consensus 113 E~gg~-~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dc 178 (615)
T KOG2247|consen 113 ESGGT-SSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDC 178 (615)
T ss_pred hccCc-chHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCc
Confidence 22221 1112278999999999999999999999988777665555888999999999876665543
No 422
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.47 E-value=0.031 Score=39.62 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=51.6
Q ss_pred eEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee-------c-------CCCcceeEEEeecCCCEEEEcc-cceEEeeCC
Q 026679 150 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-------N-------GNIGVVACLKWAPRRAMFVAAS-SVLSFWIPN 214 (235)
Q Consensus 150 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~ 214 (235)
+.+..++++|++-+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ |..+.|+.+
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 345668899999999999999999987764332 1 2446788899999998887776 778888776
Q ss_pred CC
Q 026679 215 PS 216 (235)
Q Consensus 215 ~~ 216 (235)
..
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 54
No 423
>PRK10115 protease 2; Provisional
Probab=96.46 E-value=0.45 Score=40.17 Aligned_cols=113 Identities=9% Similarity=0.085 Sum_probs=66.2
Q ss_pred cceeEEEeecCCCeeEEEe-----ccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecC------CeEEEEec
Q 026679 15 ERVISLCMSPVNDSFMSGS-----LDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEA------GAIKLFDS 83 (235)
Q Consensus 15 ~~v~~~~~~~~~~~l~s~~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~v~i~d~ 83 (235)
-.+..+.|+|++++|+.+. ....|++-|+.++..+...-......++|.++++.|+....+ ..|..+++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 3466788999999877543 233688889987763322211112348999999877666442 36777777
Q ss_pred cCCCCCCceeEeecCCCccee-EEEEccCCCeEEEecC---CCcEEEEEc
Q 026679 84 RSYDKGPFDTFLVGGDTAEVC-DIKFSNDGKSMLLTTT---NNNIYVLDA 129 (235)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---d~~i~~~d~ 129 (235)
.+........+. ....... ....+.++++++..+. ++.+.+++.
T Consensus 207 gt~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 207 GTPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 776322222222 2222222 3333447877665443 457888885
No 424
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.46 E-value=0.048 Score=42.41 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=56.8
Q ss_pred hcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcC----CC---------------C--E
Q 026679 10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQ----QG---------------L--V 68 (235)
Q Consensus 10 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~----~~---------------~--~ 68 (235)
|......+.+++.+|++++.|+...=|.|.++|+.++..++.+++.....+.|.. .. . +
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 4456677899999999998888888899999999999988888876654444321 11 1 2
Q ss_pred EEEEecCCeEEEEeccCCC
Q 026679 69 FAVAMEAGAIKLFDSRSYD 87 (235)
Q Consensus 69 l~~~~~dg~v~i~d~~~~~ 87 (235)
++-+-.-|.+.+|.++++.
T Consensus 383 vIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred EEEeccCCeEEEEecCCCC
Confidence 3334557888888887754
No 425
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.45 E-value=0.26 Score=37.40 Aligned_cols=112 Identities=16% Similarity=0.200 Sum_probs=67.8
Q ss_pred eeEEEEccCCCeEEEecCC------CcEEEEEcCCCceeeeeccC-------------CCCCcceeeEEeCCCcEEEEeC
Q 026679 103 VCDIKFSNDGKSMLLTTTN------NNIYVLDAYGGEKRCGFSLE-------------PSPNTNTEATFTPDGQYVVSGS 163 (235)
Q Consensus 103 v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l~~~~ 163 (235)
.-++++.+++.++++.-.+ ..|..++.. ++....+..+ .......+++++|+|+.|+++.
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 3467776777766666566 778888865 5554443221 1235578899999999666553
Q ss_pred C-----CC--c-------EEE--EEcCC-Cceeeee----cC-----CCcceeEEEeecCCCEEEEc-------ccceEE
Q 026679 164 G-----DG--T-------LHA--WNINT-RNEVACW----NG-----NIGVVACLKWAPRRAMFVAA-------SSVLSF 210 (235)
Q Consensus 164 ~-----dg--~-------i~v--~d~~~-~~~~~~~----~~-----~~~~v~~~~~~~~~~~l~~~-------~~~i~i 210 (235)
+ |+ . +++ ||..+ ++....+ .. ....|..+.+.+++++|+.- +..++|
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri 245 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRI 245 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEE
Confidence 3 22 1 444 55444 3222222 21 34578999999999887753 134666
Q ss_pred eeCCC
Q 026679 211 WIPNP 215 (235)
Q Consensus 211 w~~~~ 215 (235)
+.++.
T Consensus 246 ~~v~l 250 (326)
T PF13449_consen 246 YRVDL 250 (326)
T ss_pred EEEEc
Confidence 66543
No 426
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.39 E-value=0.26 Score=36.78 Aligned_cols=145 Identities=14% Similarity=0.126 Sum_probs=75.6
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcC-CCceeee-
Q 026679 60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY-GGEKRCG- 137 (235)
Q Consensus 60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~~- 137 (235)
+.-+++|++++++..-....-||.-...- ..........+..+.|.|++...+ ....|.|+.=+.. ..+.-..
T Consensus 150 ~~r~~dG~~vavs~~G~~~~s~~~G~~~w----~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~~ 224 (302)
T PF14870_consen 150 ITRSSDGRYVAVSSRGNFYSSWDPGQTTW----QPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSEP 224 (302)
T ss_dssp EEE-TTS-EEEEETTSSEEEEE-TT-SS-----EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE---
T ss_pred EEECCCCcEEEEECcccEEEEecCCCccc----eEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccccccc
Confidence 56678999888886665566677543221 222233457899999999987545 4588888887722 2222111
Q ss_pred -eccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee---cCCCcceeEEEeecCCCEEEEcc-cceEEe
Q 026679 138 -FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW---NGNIGVVACLKWAPRRAMFVAAS-SVLSFW 211 (235)
Q Consensus 138 -~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw 211 (235)
.........+..++|.+++...++|+.. .+ +.....|+.=... ..-...++.|.|.++.+-++.|. |.+--|
T Consensus 225 ~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 225 IIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred cCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 1121222347889999988777766644 44 3444555432222 23345688999988777777776 654433
No 427
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.39 E-value=0.52 Score=40.12 Aligned_cols=157 Identities=14% Similarity=0.094 Sum_probs=91.3
Q ss_pred CCeeEEEeccceEEEEecCcceeeeeeeccCCc--------------eEEEcC--CCCEEEEEec----------CCeEE
Q 026679 26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--------------TVAFDQ--QGLVFAVAME----------AGAIK 79 (235)
Q Consensus 26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--------------~~~~~~--~~~~l~~~~~----------dg~v~ 79 (235)
+..++.++.|+.+.-.|.++|+....+...... ...-.| .+..+++|+. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 457888889999999999999887665332110 011112 2345556643 68899
Q ss_pred EEeccCCCCCCceeEe-------e-cC-----CCcce-eEEEEccCCCeEEEec------------------CCCcEEEE
Q 026679 80 LFDSRSYDKGPFDTFL-------V-GG-----DTAEV-CDIKFSNDGKSMLLTT------------------TNNNIYVL 127 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~-------~-~~-----~~~~v-~~~~~~~~~~~l~~~~------------------~d~~i~~~ 127 (235)
-+|.++++..-..... . .+ ....+ ..+++.++...++.+. ..+.|.-.
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL 419 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL 419 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence 9999887742111000 0 00 00011 2334455444444321 13567888
Q ss_pred EcCCCceeeeeccCCCC-------CcceeeEEeC-CCc---EEEEeCCCCcEEEEEcCCCceeeee
Q 026679 128 DAYGGEKRCGFSLEPSP-------NTNTEATFTP-DGQ---YVVSGSGDGTLHAWNINTRNEVACW 182 (235)
Q Consensus 128 d~~~~~~~~~~~~~~~~-------~~i~~~~~~~-~~~---~l~~~~~dg~i~v~d~~~~~~~~~~ 182 (235)
|.++++..-.++...|. ....-+.+.. +|+ .++.++.+|.++++|.++|+.+...
T Consensus 420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred eCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 88999887776654332 1111122332 553 7889999999999999999887543
No 428
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=96.37 E-value=0.12 Score=36.09 Aligned_cols=103 Identities=13% Similarity=0.206 Sum_probs=63.9
Q ss_pred CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC---C---cEEEE---EcC--CCceee-
Q 026679 113 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD---G---TLHAW---NIN--TRNEVA- 180 (235)
Q Consensus 113 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g---~i~v~---d~~--~~~~~~- 180 (235)
+.|+.+.....|.+|++..........+..- +.|..+.++..|+||++--++ . .+|+| +.. ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4565557777899999984433333333332 568899999999999986332 2 45664 222 111111
Q ss_pred eecC---------------------CCcceeEEEeec-CCCEEEEcccceEEeeCCCC
Q 026679 181 CWNG---------------------NIGVVACLKWAP-RRAMFVAASSVLSFWIPNPS 216 (235)
Q Consensus 181 ~~~~---------------------~~~~v~~~~~~~-~~~~l~~~~~~i~iw~~~~~ 216 (235)
.+.+ -..++.+++..| .|++++++.+.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 1111 134677888888 56777666688999988644
No 429
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.37 E-value=0.02 Score=28.63 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=25.5
Q ss_pred ceeEEEEccCC---CeEEEecCCCcEEEEEcCC
Q 026679 102 EVCDIKFSNDG---KSMLLTTTNNNIYVLDAYG 131 (235)
Q Consensus 102 ~v~~~~~~~~~---~~l~~~~~d~~i~~~d~~~ 131 (235)
.++++.|+|+. .+|+.+-..+.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 58899999844 5888888899999999985
No 430
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.31 E-value=0.14 Score=40.42 Aligned_cols=142 Identities=10% Similarity=0.070 Sum_probs=85.0
Q ss_pred CCCEEE-EEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCC-------eEEEecCCCcEEEEEcCCCc-ee
Q 026679 65 QGLVFA-VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-------SMLLTTTNNNIYVLDAYGGE-KR 135 (235)
Q Consensus 65 ~~~~l~-~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~~~d~~~~~-~~ 135 (235)
+..+++ .|.....++--|++.++. .-....+... -+.|.|+.+ .-++|-.+..|.-.|.+-.. .+
T Consensus 478 dssli~~dg~~~~kLykmDIErGkv----veeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi 551 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKV----VEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI 551 (776)
T ss_pred CcceEEecCCCcccceeeeccccee----eeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCce
Confidence 344333 334445566666666553 2222233322 356666422 23445556667777766432 22
Q ss_pred eeeccCCCCCcceeeEEeC----CCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEE
Q 026679 136 CGFSLEPSPNTNTEATFTP----DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSF 210 (235)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~i 210 (235)
...... ...+.-.|+. ...++++++..|.|++||.-.-+....+++....|..+..+.+|.++++.+ ..+.+
T Consensus 552 ~v~esK---dY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL 628 (776)
T COG5167 552 KVVESK---DYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLL 628 (776)
T ss_pred eeeeeh---hccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEE
Confidence 222211 1222233332 345899999999999999755555556677778999999999999998888 66888
Q ss_pred eeCCC
Q 026679 211 WIPNP 215 (235)
Q Consensus 211 w~~~~ 215 (235)
-|+..
T Consensus 629 ~d~~i 633 (776)
T COG5167 629 TDVPI 633 (776)
T ss_pred Eeccc
Confidence 77754
No 431
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.22 E-value=0.68 Score=39.73 Aligned_cols=119 Identities=15% Similarity=0.180 Sum_probs=72.8
Q ss_pred cceeEEEEccCCCeEEEecCC--------------CcEEEEEcCCCceeeeeccCCCC--CcceeeEEeCC-CcEEEEeC
Q 026679 101 AEVCDIKFSNDGKSMLLTTTN--------------NNIYVLDAYGGEKRCGFSLEPSP--NTNTEATFTPD-GQYVVSGS 163 (235)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~d--------------~~i~~~d~~~~~~~~~~~~~~~~--~~i~~~~~~~~-~~~l~~~~ 163 (235)
.....+++.+....+.+.+.. ..++++|-.+-+.....+..... ..+.++.|..| +.++++|+
T Consensus 715 ~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT 794 (1096)
T KOG1897|consen 715 ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGT 794 (1096)
T ss_pred CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEE
Confidence 345566677644444443321 13777887777766655554432 23445568777 77888775
Q ss_pred C----------CCcEEEEEcCCCceeeeecCC--CcceeEEEeecCCCEEEEcccceEEeeCCCCCCCC
Q 026679 164 G----------DGTLHAWNINTRNEVACWNGN--IGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNST 220 (235)
Q Consensus 164 ~----------dg~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~~~~~ 220 (235)
. .|.|.+|....+..+.....+ .+.+.++.- -+|+++|+-+..+++|++...+...
T Consensus 795 ~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~In~~vrLye~t~~~eLr 862 (1096)
T KOG1897|consen 795 GLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGINQSVRLYEWTTERELR 862 (1096)
T ss_pred EeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEecCcEEEEEEccccceeh
Confidence 2 578999988774444443222 344444432 2688888888999999998774433
No 432
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.36 Score=35.50 Aligned_cols=153 Identities=9% Similarity=0.062 Sum_probs=92.3
Q ss_pred eeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeE
Q 026679 17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF 94 (235)
Q Consensus 17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 94 (235)
+..+.++ +++...+.++.-++|.|+.+......+..-. .-.-.+.-.|++..++..+.-+.+.|+.+.+.+.+ .-
T Consensus 89 ~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~l-ag 165 (370)
T COG5276 89 FADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL-AG 165 (370)
T ss_pred hheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCcee-ee
Confidence 3445555 4667777777889999998765433332222 22345556788988888777788899988765332 22
Q ss_pred eecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC-CcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679 95 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP-NTNTEATFTPDGQYVVSGSGDGTLHAWNI 173 (235)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~v~d~ 173 (235)
........-..++.+ |++-..+..|+-+.+.|+......... .+-.. ..+.++..+++.-+++...+ -+.+-|.
T Consensus 166 rya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli-~~~n~g~g~~sv~vsdnr~y~vvy~e--gvlivd~ 240 (370)
T COG5276 166 RYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLI-GSYNTGPGTYSVSVSDNRAYLVVYDE--GVLIVDV 240 (370)
T ss_pred eeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEE-EEEecCCceEEEEecCCeeEEEEccc--ceEEEec
Confidence 222222333455555 677777888999999999765432211 11111 24677777777666655443 2556666
Q ss_pred CCCc
Q 026679 174 NTRN 177 (235)
Q Consensus 174 ~~~~ 177 (235)
.+.+
T Consensus 241 s~~s 244 (370)
T COG5276 241 SGPS 244 (370)
T ss_pred CCCC
Confidence 5544
No 433
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=96.04 E-value=0.2 Score=32.12 Aligned_cols=105 Identities=9% Similarity=0.116 Sum_probs=64.7
Q ss_pred EEccCCCeEEEecCCCcEEEEEcCCCc--------eeeeeccCCCCCcceeeEEeC-----CCcEEEEeCCCCcEEEEEc
Q 026679 107 KFSNDGKSMLLTTTNNNIYVLDAYGGE--------KRCGFSLEPSPNTNTEATFTP-----DGQYVVSGSGDGTLHAWNI 173 (235)
Q Consensus 107 ~~~~~~~~l~~~~~d~~i~~~d~~~~~--------~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~v~d~ 173 (235)
.|......|++++..|+|.+++..... .+..+.+. ..|++++-.+ +...|+.|+.. .|..||+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin---~~italaaG~l~~~~~~D~LliGt~t-~llaYDV 80 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN---QEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDV 80 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC---CceEEEEEEecCCCCCcCEEEEeccc-eEEEEEc
Confidence 455555678888888899999875432 23333433 3356655433 34567777655 6889999
Q ss_pred CCCceeeeecCCCcceeEEEeec----CCCEEEEcc-cceEEeeCCCC
Q 026679 174 NTRNEVACWNGNIGVVACLKWAP----RRAMFVAAS-SVLSFWIPNPS 216 (235)
Q Consensus 174 ~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~-~~i~iw~~~~~ 216 (235)
.+...+..-. -...+.++.+-. +..+++.|+ ..|.-+|.++.
T Consensus 81 ~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 81 ENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred ccCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 8776654443 335677777643 355666666 55666666554
No 434
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.00 E-value=0.42 Score=35.39 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=43.9
Q ss_pred ceeEEEeecCCCeeEEEeccceEEEEecC------cc-eeeeeeecc------CCce-EEEcCCC------------CEE
Q 026679 16 RVISLCMSPVNDSFMSGSLDHSVRIWDLR------VN-ACQGILRLR------GRPT-VAFDQQG------------LVF 69 (235)
Q Consensus 16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~------~~-~~~~~~~~~------~~~~-~~~~~~~------------~~l 69 (235)
.-+.|+++|.+.+-++...-+...+||.. .. ..+-.+... ..+. +.|+... ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999988777777777889999986 12 122233311 1111 4454321 247
Q ss_pred EEEecCCeEEEEecc
Q 026679 70 AVAMEAGAIKLFDSR 84 (235)
Q Consensus 70 ~~~~~dg~v~i~d~~ 84 (235)
+.+++||+|.-|...
T Consensus 104 if~tEdGTisaW~p~ 118 (336)
T TIGR03118 104 LFVTEDGTLSGWAPA 118 (336)
T ss_pred EEEeCCceEEeecCc
Confidence 888999999999854
No 435
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.94 E-value=0.91 Score=38.74 Aligned_cols=188 Identities=11% Similarity=0.067 Sum_probs=106.9
Q ss_pred CCeeEEEeccceEEEEecCcceeeeeeeccCCc--------e--EEEc----------------CCCCEEEEEecCCeEE
Q 026679 26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--------T--VAFD----------------QQGLVFAVAMEAGAIK 79 (235)
Q Consensus 26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--------~--~~~~----------------~~~~~l~~~~~dg~v~ 79 (235)
+..++.++.++.|.-.|.++|+.+..+...... + +++. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457778888899999999999888776543211 1 2221 1345788888999999
Q ss_pred EEeccCCCCCCceeEeecCCCcce-------------eEEEEcc--CCCeEEEecC----------CCcEEEEEcCCCce
Q 026679 80 LFDSRSYDKGPFDTFLVGGDTAEV-------------CDIKFSN--DGKSMLLTTT----------NNNIYVLDAYGGEK 134 (235)
Q Consensus 80 i~d~~~~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------d~~i~~~d~~~~~~ 134 (235)
-.|.++++. ...+. ....+ ..+.-.| .+..+++++. +|.|+-+|.++|+.
T Consensus 274 ALDA~TGk~----~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 274 ALDADTGKL----CEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEECCCCCE----EEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 999988764 11110 10100 0111122 2345666642 68899999999998
Q ss_pred eeeeccCC----------------CCCcceeeEEeCCCcEEEEeC------------------CCCcEEEEEcCCCceee
Q 026679 135 RCGFSLEP----------------SPNTNTEATFTPDGQYVVSGS------------------GDGTLHAWNINTRNEVA 180 (235)
Q Consensus 135 ~~~~~~~~----------------~~~~i~~~~~~~~~~~l~~~~------------------~dg~i~v~d~~~~~~~~ 180 (235)
.-.+.... ....-..++++|+...++.+. ..+.|.-.|.++|+..-
T Consensus 349 ~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W 428 (764)
T TIGR03074 349 VWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERW 428 (764)
T ss_pred eeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEE
Confidence 76654310 001112345566555554422 13457778888888876
Q ss_pred eecCCCcce---------eEEEeec-CCC---EEEEcc--cceEEeeCCCCCC
Q 026679 181 CWNGNIGVV---------ACLKWAP-RRA---MFVAAS--SVLSFWIPNPSSN 218 (235)
Q Consensus 181 ~~~~~~~~v---------~~~~~~~-~~~---~l~~~~--~~i~iw~~~~~~~ 218 (235)
.++.....+ .=+.+.. +|+ .++.++ |.+.+.|-++++.
T Consensus 429 ~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 429 VFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred EecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 665311111 1122222 453 566666 6677888776543
No 436
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.88 E-value=0.68 Score=36.78 Aligned_cols=107 Identities=7% Similarity=0.058 Sum_probs=56.0
Q ss_pred eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCce---eEeecCCCcceeEEEEccCC------CeEEEec----------
Q 026679 59 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD---TFLVGGDTAEVCDIKFSNDG------KSMLLTT---------- 119 (235)
Q Consensus 59 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~------~~l~~~~---------- 119 (235)
.++|.|++++|++--..|.|++++..+....... .............++++|+- .+|....
T Consensus 34 ~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~ 113 (454)
T TIGR03606 34 ALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELP 113 (454)
T ss_pred EEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCcc
Confidence 3888999877666555688888876543321111 01111125667889999874 2344332
Q ss_pred CCCcEEEEEcCCC--c---eeeeeccC--CCCCcceeeEEeCCCcEEEEeCCC
Q 026679 120 TNNNIYVLDAYGG--E---KRCGFSLE--PSPNTNTEATFTPDGQYVVSGSGD 165 (235)
Q Consensus 120 ~d~~i~~~d~~~~--~---~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d 165 (235)
....|.-|.+... . ....+... .....-..+.|.|||.++++.++.
T Consensus 114 ~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 114 NHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234555555321 1 11111111 111224568899999877655543
No 437
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.84 E-value=0.36 Score=40.27 Aligned_cols=106 Identities=13% Similarity=0.230 Sum_probs=70.3
Q ss_pred CCCEEEEEecCCeEEEEeccC-------C----C-------CCCceeEeecCCCcceeEEEEc--cCCCeEEEecCCCcE
Q 026679 65 QGLVFAVAMEAGAIKLFDSRS-------Y----D-------KGPFDTFLVGGDTAEVCDIKFS--NDGKSMLLTTTNNNI 124 (235)
Q Consensus 65 ~~~~l~~~~~dg~v~i~d~~~-------~----~-------~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i 124 (235)
+...|+.+..||.|.+|.++. . + ..+. +. ......+++++++ ...+++|+++....|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~--f~-~~v~~SaWGLdIh~~~~~rlIAVSsNs~~V 189 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF--FH-LRVGASAWGLDIHDYKKSRLIAVSSNSQEV 189 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCC--eE-eecCCceeEEEEEecCcceEEEEecCCceE
Confidence 557899999999999997632 1 0 0011 11 1234578899998 788888888888888
Q ss_pred EEEEcCCCc-eeeeeccCCCCCcceeeEEeCCC---c---EEEEeCCCCcEEEEEc
Q 026679 125 YVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDG---Q---YVVSGSGDGTLHAWNI 173 (235)
Q Consensus 125 ~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~v~d~ 173 (235)
.+|-..... .......+.+...|.+++|-++. . +|++++-.|.+.+|++
T Consensus 190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 887655421 11111122344558899997743 2 7788888999999887
No 438
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.84 E-value=0.41 Score=34.01 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=65.1
Q ss_pred eeEEEEccCCCeEEEe-cCCCcEEEEE--cCCCceeee---eccCC----CCCcceeeEEeCCCcEEEEeCCCCcEEEEE
Q 026679 103 VCDIKFSNDGKSMLLT-TTNNNIYVLD--AYGGEKRCG---FSLEP----SPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172 (235)
Q Consensus 103 v~~~~~~~~~~~l~~~-~~d~~i~~~d--~~~~~~~~~---~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d 172 (235)
-+.++|+.+.+.+... +.+-+|.-|| ..+|..... +.+.. ..-..-.++...+|++.++.-..++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 3568888777666544 4466676676 555433211 11111 111123466777889888888899999999
Q ss_pred cCCCceeeeecCCCcceeEEEeecC
Q 026679 173 INTRNEVACWNGNIGVVACLKWAPR 197 (235)
Q Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~~~ 197 (235)
..+|+.+.+++-....|++++|--.
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCC
Confidence 9999999999988889999999643
No 439
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.83 E-value=0.018 Score=48.24 Aligned_cols=163 Identities=13% Similarity=0.141 Sum_probs=90.1
Q ss_pred hhcccccceeEEEeecC-CCeeEEEeccceEEEEecC--cceeeeeeecc-----C--CceEEEcC---CCCEEEEEecC
Q 026679 9 YFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLR--VNACQGILRLR-----G--RPTVAFDQ---QGLVFAVAMEA 75 (235)
Q Consensus 9 ~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~~-----~--~~~~~~~~---~~~~l~~~~~d 75 (235)
.++|..+.|-.+.|-.. -..+. -.-|.+.|||++ .|+....+..+ + ...+.|.| +.-++..+..+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 35667777888888432 12222 334678899875 34333322221 1 12255555 55677778888
Q ss_pred CeEEEEeccCCCCCCceeEeecCCCcceeE-----------EEEccCCCeEEEecCCCcEEEEEcC-----CCceeeeec
Q 026679 76 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCD-----------IKFSNDGKSMLLTTTNNNIYVLDAY-----GGEKRCGFS 139 (235)
Q Consensus 76 g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~-----------~~~~~~~~~l~~~~~d~~i~~~d~~-----~~~~~~~~~ 139 (235)
+.+++....+... ..+.+|...+.. -..+|||..++.++.||.+..|.+. ...+....+
T Consensus 205 ~~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk 279 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK 279 (1283)
T ss_pred CceeEeeechHHH-----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccC
Confidence 9998877655332 111224333322 2368999999999999998887653 223333333
Q ss_pred cCCCCCcceeeEEeCCC---------cEEEEeCC-CCcEEEEEcCCCcee
Q 026679 140 LEPSPNTNTEATFTPDG---------QYVVSGSG-DGTLHAWNINTRNEV 179 (235)
Q Consensus 140 ~~~~~~~i~~~~~~~~~---------~~l~~~~~-dg~i~v~d~~~~~~~ 179 (235)
.+.. .+-.|.-++.+. .++++++. +..+++|.....+++
T Consensus 280 phd~-~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 280 PHDK-HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCC-CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3332 222222232221 23455544 456889987776665
No 440
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.82 E-value=0.12 Score=36.66 Aligned_cols=69 Identities=22% Similarity=0.276 Sum_probs=49.1
Q ss_pred EccCCCeEEEecCCCcEEEEEcCCCceeeee-c----cC-------CCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC
Q 026679 108 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF-S----LE-------PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 175 (235)
Q Consensus 108 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~----~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 175 (235)
+..++.+|++.+.+|.+++||+.+++....- . +. .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457889999999999999999988764332 0 11 2335678888888888776654 57788888754
Q ss_pred Cc
Q 026679 176 RN 177 (235)
Q Consensus 176 ~~ 177 (235)
+.
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 43
No 441
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.65 E-value=0.47 Score=33.26 Aligned_cols=139 Identities=11% Similarity=0.066 Sum_probs=76.9
Q ss_pred CEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCC------cEEEE---EcC--CCcee
Q 026679 67 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN------NIYVL---DAY--GGEKR 135 (235)
Q Consensus 67 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~~~---d~~--~~~~~ 135 (235)
+.|+.+...+.|.+|++.+........+. --+.|..+.++..|+++++--.+. .+++| ... ..+.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~---Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS---TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc---chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 45555567788999999955543333333 236889999999999999865422 34553 221 11111
Q ss_pred ---------------------eeeccCCCCCcceeeEEeC-CCcEEEEeCCCCcEEEEEcCCCce-ee-----eec----
Q 026679 136 ---------------------CGFSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNE-VA-----CWN---- 183 (235)
Q Consensus 136 ---------------------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~-~~-----~~~---- 183 (235)
...+++. ..++.+++-.| .|+++ .|+ ++.+.+|.+..... .. .+.
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~ 182 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLI 182 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEEEEecccccEEechhhhh
Confidence 1111111 24567777777 45544 444 34688888764332 11 111
Q ss_pred -CCC-cceeEEEeecCCCEEEEcc-cceEEeeC
Q 026679 184 -GNI-GVVACLKWAPRRAMFVAAS-SVLSFWIP 213 (235)
Q Consensus 184 -~~~-~~v~~~~~~~~~~~l~~~~-~~i~iw~~ 213 (235)
.|. -.+..+++. +.|+|..+ -.+++..+
T Consensus 183 ~~~~~~~p~~v~ic--~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 183 DHIDNFKPTQVAIC--EGYIAVMSDLEVLVLKL 213 (215)
T ss_pred heecCceEEEEEEE--eeEEEEecCCEEEEEEE
Confidence 111 124455553 56777777 55666654
No 442
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=95.63 E-value=0.64 Score=39.08 Aligned_cols=108 Identities=10% Similarity=0.180 Sum_probs=58.9
Q ss_pred eEEEEccCCCeEEEecCCCc-----EEEEEcCCCceeeeeccC-CCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCc
Q 026679 104 CDIKFSNDGKSMLLTTTNNN-----IYVLDAYGGEKRCGFSLE-PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 177 (235)
Q Consensus 104 ~~~~~~~~~~~l~~~~~d~~-----i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~ 177 (235)
..+.|-|+|..+++-..||. |.++.. +|-....+.+. +....+...+|+-....++.+ ..+.+.+|-..+-.
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYH 327 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceE
Confidence 35889999999998775543 555553 22111111111 111335556676555444443 45579999877655
Q ss_pred eeeeecCCCcceeEEEeecCC--CEEEEcccceEEeeC
Q 026679 178 EVACWNGNIGVVACLKWAPRR--AMFVAASSVLSFWIP 213 (235)
Q Consensus 178 ~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~i~iw~~ 213 (235)
........-..+.-+.|+|.. ..+.++++.|..-.+
T Consensus 328 WYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~f 365 (1243)
T COG5290 328 WYLKVERQIPGISYVKWHPEEKNTLLFRDGERILRVFF 365 (1243)
T ss_pred EEEEEeecCCCcceeeeccccCcEEEEecCCeEEEEEe
Confidence 433333333456778899843 445555555443333
No 443
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.60 E-value=0.47 Score=36.18 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=12.2
Q ss_pred cceeeEEeCCCcEEEEeCC
Q 026679 146 TNTEATFTPDGQYVVSGSG 164 (235)
Q Consensus 146 ~i~~~~~~~~~~~l~~~~~ 164 (235)
.-..+.|.|||.+.++.+.
T Consensus 115 ~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 115 NGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp -EEEEEE-TTSEEEEEEB-
T ss_pred CCccccCCCCCcEEEEeCC
Confidence 3567999999977666543
No 444
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=95.57 E-value=0.58 Score=33.77 Aligned_cols=145 Identities=14% Similarity=0.080 Sum_probs=78.0
Q ss_pred EEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEec-C--CeEEEEeccCCCCCCceeEe--ecCCCcceeEEEEcc
Q 026679 38 VRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAME-A--GAIKLFDSRSYDKGPFDTFL--VGGDTAEVCDIKFSN 110 (235)
Q Consensus 38 i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~-d--g~v~i~d~~~~~~~~~~~~~--~~~~~~~v~~~~~~~ 110 (235)
-.+||+.+++....-.....-| -.+-++|+++.+|+. + ..+++++............. .-.....-.....-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 3478888776543322222222 457789999999875 2 35778876541111100100 001122233455567
Q ss_pred CCCeEEEecCCCc-EEEEEcCCC-ceeeeecc------CCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee
Q 026679 111 DGKSMLLTTTNNN-IYVLDAYGG-EKRCGFSL------EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 182 (235)
Q Consensus 111 ~~~~l~~~~~d~~-i~~~d~~~~-~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 182 (235)
||+.|+.|+.... ..+|.-+.. .....+.. ......--.+...|+|++++.+..+. .+||..+.+.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 9999999888643 344443211 11111100 01111122466789999999988764 46798888776666
Q ss_pred cC
Q 026679 183 NG 184 (235)
Q Consensus 183 ~~ 184 (235)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 53
No 445
>PRK13684 Ycf48-like protein; Provisional
Probab=95.56 E-value=0.76 Score=35.09 Aligned_cols=153 Identities=16% Similarity=0.172 Sum_probs=77.6
Q ss_pred ccceeEEEeecCCCeeEEEeccceEEE-EecCcceeeeeeec---cCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHSVRI-WDLRVNACQGILRL---RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG 89 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~i~v-wd~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 89 (235)
...+.++.+.|++.+++++. .|.+.. ++ ..++.-..... .....+.+.++++.++++ ..|.+.+=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 34678888888876665554 455443 22 12221111221 223347888888876665 4566543222222210
Q ss_pred CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc-CCCCCcceeeEEeCCCcEEEEeCCCCcE
Q 026679 90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-EPSPNTNTEATFTPDGQYVVSGSGDGTL 168 (235)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (235)
.............+..+.+.|++. +++++.+|.+. .....++.-..... ..-+.....+.|..+++.++ .+..|.|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i 325 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL 325 (334)
T ss_pred ccccCCccccccceeeEEEcCCCC-EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence 000000011123577888998776 45555667554 33344443322221 11223466777776666655 4557777
Q ss_pred EEEE
Q 026679 169 HAWN 172 (235)
Q Consensus 169 ~v~d 172 (235)
.-|+
T Consensus 326 l~~~ 329 (334)
T PRK13684 326 LRYV 329 (334)
T ss_pred EEec
Confidence 7665
No 446
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=95.37 E-value=0.69 Score=33.40 Aligned_cols=137 Identities=13% Similarity=0.124 Sum_probs=77.1
Q ss_pred EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-C--CcEEEEEcCC----CceeeeeccCCCCCcceee
Q 026679 78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N--NNIYVLDAYG----GEKRCGFSLEPSPNTNTEA 150 (235)
Q Consensus 78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~~~d~~~----~~~~~~~~~~~~~~~i~~~ 150 (235)
-.+||+.+.+..+... .....+.+-.+.+||+.+.+|+. + ..+++++... .........-....+-...
T Consensus 48 s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~ 123 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA 123 (243)
T ss_pred EEEEecCCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccc
Confidence 4578888766422211 12233444567889999998876 2 3488888654 1111100000112233345
Q ss_pred EEeCCCcEEEEeCCCC-cEEEEEcCC-Cceeeee---c-----CCCcceeEEEeecCCCEEEEcccceEEeeCCCCCC
Q 026679 151 TFTPDGQYVVSGSGDG-TLHAWNINT-RNEVACW---N-----GNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSN 218 (235)
Q Consensus 151 ~~~~~~~~l~~~~~dg-~i~v~d~~~-~~~~~~~---~-----~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~~~ 218 (235)
..-|||+.|+.|+... ...+|.-+. ......+ . ....-...+...|+|++++.+...-.|||....+.
T Consensus 124 ~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v 201 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTV 201 (243)
T ss_pred eECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeE
Confidence 5567999999988764 344555321 1111111 1 01122335667899999999997788899987754
No 447
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.36 E-value=0.0025 Score=49.31 Aligned_cols=138 Identities=18% Similarity=0.234 Sum_probs=90.6
Q ss_pred ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEE-EEecCCeEEEEeccCCCCCCcee
Q 026679 16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDT 93 (235)
Q Consensus 16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~~dg~v~i~d~~~~~~~~~~~ 93 (235)
.-....|-|.+.-++.++.+..+..||- .++............ ++|+.++..++ .+-..+.+.+||+.+.....
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq--- 111 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ--- 111 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhh-hcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH---
Confidence 3345578888777888888888989984 444444443333333 78888776554 45567899999998754311
Q ss_pred EeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679 94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 160 (235)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (235)
....+ ...-.-+.|++.+..++.+...+.+.+++..+.+... ....|...++++++.+.+..+.
T Consensus 112 LE~gg-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii--v~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 112 LESGG-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII--VMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred HhccC-cchHHHHhhccCCccccccccccceEEEeccchhhhh--hhcccccceeEEEecccceeee
Confidence 11111 1112226899988889999899999999987765443 3333556688899988765443
No 448
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.35 E-value=1 Score=38.19 Aligned_cols=73 Identities=15% Similarity=0.271 Sum_probs=48.5
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeccCC---------CCC-CceeEe------ecCCCcceeEEEEccC---CCeEEEecC
Q 026679 60 VAFDQQGLVFAVAMEAGAIKLFDSRSY---------DKG-PFDTFL------VGGDTAEVCDIKFSND---GKSMLLTTT 120 (235)
Q Consensus 60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~---------~~~-~~~~~~------~~~~~~~v~~~~~~~~---~~~l~~~~~ 120 (235)
+.++|+|.+++..+..|...+.=.+.. +.. ...... .......|..+.|+|. +.+|++-..
T Consensus 90 i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLts 169 (717)
T PF10168_consen 90 ISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTS 169 (717)
T ss_pred EEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEec
Confidence 788999999999888665444322211 100 000111 1233457889999995 588999999
Q ss_pred CCcEEEEEcCCC
Q 026679 121 NNNIYVLDAYGG 132 (235)
Q Consensus 121 d~~i~~~d~~~~ 132 (235)
|+.+++||+...
T Consensus 170 dn~lR~y~~~~~ 181 (717)
T PF10168_consen 170 DNTLRLYDISDP 181 (717)
T ss_pred CCEEEEEecCCC
Confidence 999999999753
No 449
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.33 E-value=0.91 Score=34.54 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=86.0
Q ss_pred ccceeEEEeecCCCeeEEEeccce------EEEEecCc--c--ee---eee--eecc----------CCceEEEcCCCCE
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHS------VRIWDLRV--N--AC---QGI--LRLR----------GRPTVAFDQQGLV 68 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~------i~vwd~~~--~--~~---~~~--~~~~----------~~~~~~~~~~~~~ 68 (235)
-+.+..+.+.+++..+++.+.+|. +...++.. + .. ... +... ....+++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356788999976777777788887 65555543 1 01 111 1111 1123777777877
Q ss_pred EEEEecC------CeEEEEeccCCCCCC-c---eeE-------eecCCCcceeEEEEccCCCeEEEecC-----CC----
Q 026679 69 FAVAMEA------GAIKLFDSRSYDKGP-F---DTF-------LVGGDTAEVCDIKFSNDGKSMLLTTT-----NN---- 122 (235)
Q Consensus 69 l~~~~~d------g~v~i~d~~~~~~~~-~---~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~---- 122 (235)
+++.-.+ ..|..++.. +.... . ..+ .....+...-+++++|+|+.|+++.+ |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7777667 788888865 22211 0 001 11234567889999999997776543 22
Q ss_pred -------cEEEEEcCC-Cceee--eeccCC-----CCCcceeeEEeCCCcEEEE
Q 026679 123 -------NIYVLDAYG-GEKRC--GFSLEP-----SPNTNTEATFTPDGQYVVS 161 (235)
Q Consensus 123 -------~i~~~d~~~-~~~~~--~~~~~~-----~~~~i~~~~~~~~~~~l~~ 161 (235)
.|..||..+ ++... .+.... ....+..+.+-+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 244456554 32222 333332 3466888999999997764
No 450
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.30 E-value=1 Score=40.00 Aligned_cols=161 Identities=16% Similarity=0.175 Sum_probs=90.1
Q ss_pred cccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceE----------EEcCCCCEEEEEecCCeEEEEe
Q 026679 13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV----------AFDQQGLVFAVAMEAGAIKLFD 82 (235)
Q Consensus 13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~dg~v~i~d 82 (235)
|...-+.+-+-|.=++ +-.+.|..+.+|+.+++.....+..-...++ .|.|.=+++++-..--.|.++-
T Consensus 77 ~~~~~~~mGiFpeI~R-aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilg 155 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGR-AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILG 155 (1311)
T ss_pred Ccceeeeeccchhhcc-eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEE
Confidence 3333344445553222 2234588999999998776666655443331 1223334445545555566654
Q ss_pred ccCCCC----CC-ceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEc--CCC---c-ee--------------ee
Q 026679 83 SRSYDK----GP-FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA--YGG---E-KR--------------CG 137 (235)
Q Consensus 83 ~~~~~~----~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~--~~~---~-~~--------------~~ 137 (235)
+.-.+. .. ...+........|.++....+|+.++ ++.||.|+-.-. ..+ + +. ..
T Consensus 156 V~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~-~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~ 234 (1311)
T KOG1900|consen 156 VSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFF-AGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL 234 (1311)
T ss_pred EEeccccCcccccccceeeecCCceEEEEEeccCCcEEE-eecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence 432211 11 11233334456788998777887555 555664432211 111 0 00 00
Q ss_pred eccC-CCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC
Q 026679 138 FSLE-PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 175 (235)
Q Consensus 138 ~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 175 (235)
.... .+..+|..++.....+.+.+-++.|.|.+||+..
T Consensus 235 ~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 235 LSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 1122 3446799999998888999999999999999965
No 451
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.25 E-value=0.79 Score=33.38 Aligned_cols=127 Identities=13% Similarity=0.229 Sum_probs=77.2
Q ss_pred EeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCC---cceeEEEE
Q 026679 32 GSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT---AEVCDIKF 108 (235)
Q Consensus 32 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~---~~v~~~~~ 108 (235)
.-.++...+||.++.+.+..+..... -.-+..+++.|+.+.....+..+|..+.+... ........ ..++.+.|
T Consensus 106 TWk~~~~f~yd~~tl~~~~~~~y~~E-GWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~--~i~V~~~g~pv~~LNELE~ 182 (264)
T PF05096_consen 106 TWKEGTGFVYDPNTLKKIGTFPYPGE-GWGLTSDGKRLIMSDGSSRLYFLDPETFKEVR--TIQVTDNGRPVSNLNELEY 182 (264)
T ss_dssp ESSSSEEEEEETTTTEEEEEEE-SSS---EEEECSSCEEEE-SSSEEEEE-TTT-SEEE--EEE-EETTEE---EEEEEE
T ss_pred EecCCeEEEEccccceEEEEEecCCc-ceEEEcCCCEEEEECCccceEEECCcccceEE--EEEEEECCEECCCcEeEEE
Confidence 34578899999998888888876542 22223677788888888899999988765422 22222222 24556666
Q ss_pred ccCCCeEEEecCCCcEEEEEcCCCceeeeeccC-------------CCCCcceeeEEeCCCcEE-EEe
Q 026679 109 SNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE-------------PSPNTNTEATFTPDGQYV-VSG 162 (235)
Q Consensus 109 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l-~~~ 162 (235)
. +|...|=.-....|...|..+|+....+.+. ....-.+.+++.|..+.| ++|
T Consensus 183 i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 183 I-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp E-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred E-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5 6666665666778999999999887654321 113457889999865555 444
No 452
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.05 E-value=0.53 Score=30.29 Aligned_cols=113 Identities=10% Similarity=0.110 Sum_probs=61.3
Q ss_pred EEcCCCCEEEEEecCCeEEEEeccCCCCCC---ceeEeecCCCcceeEEEEcc-----CCCeEEEecCCCcEEEEEcCCC
Q 026679 61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGP---FDTFLVGGDTAEVCDIKFSN-----DGKSMLLTTTNNNIYVLDAYGG 132 (235)
Q Consensus 61 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~---~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~ 132 (235)
.|......|++++.-|.|.+++........ .....+..-...|++++-.+ +...|+.|+ ...+..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 444555567777777788888765432110 00111122335566665433 234455554 556999999887
Q ss_pred ceeeeeccCCCCCcceeeEEeC---CCcEEEEeCCCCcEEEEEcCCCc
Q 026679 133 EKRCGFSLEPSPNTNTEATFTP---DGQYVVSGSGDGTLHAWNINTRN 177 (235)
Q Consensus 133 ~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~v~d~~~~~ 177 (235)
..+.-...+ ..+.++.+-. ...-|+..+.+..|.-||....+
T Consensus 84 ~d~Fyke~~---DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 84 SDLFYKEVP---DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred chhhhhhCc---cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 665433333 3366666532 22334444456677777764433
No 453
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.04 E-value=1.3 Score=34.70 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=74.1
Q ss_pred eeEEEeecCCCeeEEEeccceEEEEecCcc--eeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCC---Cc
Q 026679 17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVN--ACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG---PF 91 (235)
Q Consensus 17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~---~~ 91 (235)
...+..++++.+++.+..-..++-||-... +.+..-.......+.+.+++..++++ ..|.+.. ....+... ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccce
Confidence 344556677766666544322333432110 11211112223347788888877666 4555433 22222211 11
Q ss_pred eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec-cCCCCCcceeeEEeCCCcEEEEeCCCCcEEE
Q 026679 92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDGTLHA 170 (235)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v 170 (235)
...........+..+.|.+++. +++++..|.+.... ..++.-.... ...-......+.|.++++.+++| .+|.|.-
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~ 395 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLR 395 (398)
T ss_pred eecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEE
Confidence 1111111224588899998776 55566677665553 3444322222 12223457789988776666555 5676654
Q ss_pred E
Q 026679 171 W 171 (235)
Q Consensus 171 ~ 171 (235)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 4
No 454
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.03 E-value=0.15 Score=25.18 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=27.6
Q ss_pred CCCcEEEEeC-CCCcEEEEEcCCCceeeeecCCCcceeEEEe
Q 026679 154 PDGQYVVSGS-GDGTLHAWNINTRNEVACWNGNIGVVACLKW 194 (235)
Q Consensus 154 ~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 194 (235)
|++++|+++. .++.|.++|..+++.+..+... .....+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5677666544 5789999999988888777652 33445544
No 455
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=95.00 E-value=0.17 Score=41.42 Aligned_cols=73 Identities=15% Similarity=0.277 Sum_probs=45.1
Q ss_pred cCCCeEEEecCCCcEEEEEcCC----CceeeeeccC--------------------CCCCcceeeEEeC----CCcEEEE
Q 026679 110 NDGKSMLLTTTNNNIYVLDAYG----GEKRCGFSLE--------------------PSPNTNTEATFTP----DGQYVVS 161 (235)
Q Consensus 110 ~~~~~l~~~~~d~~i~~~d~~~----~~~~~~~~~~--------------------~~~~~i~~~~~~~----~~~~l~~ 161 (235)
++...++.+..||.+....... +......... ........+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3677888899999988888764 2111111100 1123345566666 6789999
Q ss_pred eCCCCcEEEEEcCCCceeeee
Q 026679 162 GSGDGTLHAWNINTRNEVACW 182 (235)
Q Consensus 162 ~~~dg~i~v~d~~~~~~~~~~ 182 (235)
.+.|+.+++||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999985544
No 456
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.94 E-value=1.4 Score=34.54 Aligned_cols=108 Identities=16% Similarity=0.178 Sum_probs=64.5
Q ss_pred CcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-----eeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcC
Q 026679 100 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-----KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 174 (235)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~ 174 (235)
...+..+.+.+++..++++ ..|.+.. ....++ .............+..+.|.+++..+++| ..|.+.... .
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D 355 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-D 355 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-C
Confidence 4568889999998866554 5565543 333333 12222222222457889999887766555 567665543 3
Q ss_pred CCceeeee---cCCCcceeEEEeecCCCEEEEcc-cceEEe
Q 026679 175 TRNEVACW---NGNIGVVACLKWAPRRAMFVAAS-SVLSFW 211 (235)
Q Consensus 175 ~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw 211 (235)
.++.-... ..-....+.+.|.++++.+++|. |.|.-|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 44432222 22345788999988888888887 665443
No 457
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.92 E-value=0.74 Score=36.79 Aligned_cols=72 Identities=10% Similarity=0.125 Sum_probs=45.7
Q ss_pred cceeeEEeCCCcEEEEeCCCCcEEEEEc---------CCCceeeee-----------cCCCcceeEEEeecCC----CEE
Q 026679 146 TNTEATFTPDGQYVVSGSGDGTLHAWNI---------NTRNEVACW-----------NGNIGVVACLKWAPRR----AMF 201 (235)
Q Consensus 146 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~---------~~~~~~~~~-----------~~~~~~v~~~~~~~~~----~~l 201 (235)
.|..+..++.|..++..+.+|.+.++=. ++|+..-.. ....-.+..++|+|+. .++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 3566778999999999999997655431 233321111 1112356788999965 344
Q ss_pred EEc-ccceEEeeCCCCC
Q 026679 202 VAA-SSVLSFWIPNPSS 217 (235)
Q Consensus 202 ~~~-~~~i~iw~~~~~~ 217 (235)
+-. ...+++|+.....
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 444 4889999986544
No 458
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.87 E-value=1.3 Score=33.67 Aligned_cols=98 Identities=10% Similarity=0.067 Sum_probs=48.5
Q ss_pred CCCEEEEEec-----CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCC----cEEEEEcCCCcee
Q 026679 65 QGLVFAVAME-----AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN----NIYVLDAYGGEKR 135 (235)
Q Consensus 65 ~~~~l~~~~~-----dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~~~d~~~~~~~ 135 (235)
++++++.|+. ...+..||+.+.+...... +... ......+...+++..+.|+.++ .+..||..+.+..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~--~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD--FPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC--CCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 5677777764 2467888887755421111 1111 1111222234566777777653 3568898876654
Q ss_pred eeeccCC--CCCcc-eee-EEeCCCcEEEEeCCC
Q 026679 136 CGFSLEP--SPNTN-TEA-TFTPDGQYVVSGSGD 165 (235)
Q Consensus 136 ~~~~~~~--~~~~i-~~~-~~~~~~~~l~~~~~d 165 (235)
..-.... .+... ... ....++++++.|+.+
T Consensus 200 ~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 200 KVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred ECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 3222110 11111 111 122356778888865
No 459
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.84 E-value=0.1 Score=43.98 Aligned_cols=139 Identities=13% Similarity=0.217 Sum_probs=80.1
Q ss_pred CCeEEEEeccCCCC--CCceeE-eecCCCcceeEEEEcc---CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcce
Q 026679 75 AGAIKLFDSRSYDK--GPFDTF-LVGGDTAEVCDIKFSN---DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT 148 (235)
Q Consensus 75 dg~v~i~d~~~~~~--~~~~~~-~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~ 148 (235)
-|...+||+.-.+. .+.... ........+.-+.|.| +.-++..+..++.+++........ ..+.. |...+.
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rs--Hs~~~~ 228 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRS--HSQRVT 228 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHh--cCCCcc
Confidence 46788998764332 221111 1222223344455554 566777788889988877654332 22222 322233
Q ss_pred ee-----------EEeCCCcEEEEeCCCCcEEEEEcC-----CCceeeeecCCCc-ceeEEEeecC---------CCEEE
Q 026679 149 EA-----------TFTPDGQYVVSGSGDGTLHAWNIN-----TRNEVACWNGNIG-VVACLKWAPR---------RAMFV 202 (235)
Q Consensus 149 ~~-----------~~~~~~~~l~~~~~dg~i~v~d~~-----~~~~~~~~~~~~~-~v~~~~~~~~---------~~~l~ 202 (235)
.+ ..||||..++++..||.+++|.+. .-++++.++.|.+ +-.|.-|+.+ -.+++
T Consensus 229 d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~I 308 (1283)
T KOG1916|consen 229 DMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRI 308 (1283)
T ss_pred cHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEE
Confidence 22 379999999999999998877653 4456677777763 3333334432 13455
Q ss_pred Ecc---cceEEeeCCCC
Q 026679 203 AAS---SVLSFWIPNPS 216 (235)
Q Consensus 203 ~~~---~~i~iw~~~~~ 216 (235)
+++ ..+++|.....
T Consensus 309 tttd~nre~k~w~~a~w 325 (1283)
T KOG1916|consen 309 TTTDVNREEKFWAEAPW 325 (1283)
T ss_pred ecccCCcceeEeeccch
Confidence 555 44888876543
No 460
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=94.76 E-value=1.6 Score=34.50 Aligned_cols=30 Identities=13% Similarity=0.498 Sum_probs=24.9
Q ss_pred cceeeEEeCCCcEEEEeCCCCcEEEEEcCC
Q 026679 146 TNTEATFTPDGQYVVSGSGDGTLHAWNINT 175 (235)
Q Consensus 146 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 175 (235)
.|..++..+..+.|++.+.+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 388899999889999999999999999974
No 461
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=2.2 Score=35.76 Aligned_cols=173 Identities=9% Similarity=0.126 Sum_probs=79.5
Q ss_pred eEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCe
Q 026679 37 SVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS 114 (235)
Q Consensus 37 ~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 114 (235)
.|+|++. +|+.+..+.-..... +.|+.+. .|++...+|.+++|++-....... ..-.......|..+.+..+|
T Consensus 65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~-svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 65 YIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESN-SVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhccc-ccccccccCceeEEEEecCc--
Confidence 4777775 565555544333333 6666554 566778999999999876443221 11112223345555555555
Q ss_pred EEEecCCCcEEEEEcCCCceeeeecc-CCCCCcceeeEEeCCCc---EEEEeC-CCCcEEEEEcCCCc-eeeeecCCCcc
Q 026679 115 MLLTTTNNNIYVLDAYGGEKRCGFSL-EPSPNTNTEATFTPDGQ---YVVSGS-GDGTLHAWNINTRN-EVACWNGNIGV 188 (235)
Q Consensus 115 l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~---~l~~~~-~dg~i~v~d~~~~~-~~~~~~~~~~~ 188 (235)
+++-..+|.+.+-.-........+.. +....+-.+-..-+++. .++-.. ..+ ..++...... ....+....+.
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCce
Confidence 44444555555543222211222111 11111111111112211 111111 111 1122221111 11222222467
Q ss_pred eeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679 189 VACLKWAPRRAMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 189 v~~~~~~~~~~~l~~~~--~~i~iw~~~~ 215 (235)
+..+..||+.++|+--. |.+.+-+.+.
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDL 247 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecch
Confidence 88899999999988776 5555544444
No 462
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.71 E-value=1.4 Score=33.58 Aligned_cols=103 Identities=14% Similarity=0.147 Sum_probs=51.3
Q ss_pred ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeee-eccC-----C---ceEEEcCC----CCEEEEEecC-------
Q 026679 16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL-RLRG-----R---PTVAFDQQ----GLVFAVAMEA------- 75 (235)
Q Consensus 16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~-----~---~~~~~~~~----~~~l~~~~~d------- 75 (235)
.-+.|+|.|+|+.+++ ...|.|++++ ..+.....+ .... . .-++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877665 5599999999 444431111 1111 1 12889984 4444433321
Q ss_pred -CeEEEEeccCCCCC--Cc-eeE-eec---CCCcceeEEEEccCCCeEEEecC
Q 026679 76 -GAIKLFDSRSYDKG--PF-DTF-LVG---GDTAEVCDIKFSNDGKSMLLTTT 120 (235)
Q Consensus 76 -g~v~i~d~~~~~~~--~~-~~~-~~~---~~~~~v~~~~~~~~~~~l~~~~~ 120 (235)
..|.-|........ .. ... ... ........+.|.|||.+.++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 23444444433110 00 011 111 22345567999999976666554
No 463
>PRK13684 Ycf48-like protein; Provisional
Probab=94.58 E-value=1.6 Score=33.43 Aligned_cols=147 Identities=15% Similarity=0.084 Sum_probs=80.3
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec
Q 026679 60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS 139 (235)
Q Consensus 60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 139 (235)
+.+.|++.+++++ ..|.+..- ...... ............+..+.+.++++.+++ +..|.+.+=....+..-....
T Consensus 178 i~~~~~g~~v~~g-~~G~i~~s-~~~gg~--tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~~~~ 252 (334)
T PRK13684 178 LRRSPDGKYVAVS-SRGNFYST-WEPGQT--AWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWSKPI 252 (334)
T ss_pred EEECCCCeEEEEe-CCceEEEE-cCCCCC--eEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCcccccc
Confidence 6777877655444 44544431 111110 011122234467889999999886555 456766432233333222212
Q ss_pred cC--CCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec---CCCcceeEEEeecCCCEEEEcc-cceEEeeC
Q 026679 140 LE--PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN---GNIGVVACLKWAPRRAMFVAAS-SVLSFWIP 213 (235)
Q Consensus 140 ~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~ 213 (235)
.+ .....+..+.+.|++..++++ .+|.+. .....++.-.... .-....+.+.|..+++.+++|. |.|--|+-
T Consensus 253 ~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 253 IPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred CCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 11 112346778899987765554 566554 3444444333322 2223578888888888888887 77776654
No 464
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=94.16 E-value=0.46 Score=39.95 Aligned_cols=141 Identities=13% Similarity=0.043 Sum_probs=83.0
Q ss_pred CEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce---eeeeccCCC
Q 026679 67 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK---RCGFSLEPS 143 (235)
Q Consensus 67 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~ 143 (235)
..+..|+.++.+.++.-...................+.++.+++. .+..|.-||++-.|--..... ......+..
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g 625 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTG 625 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCCCccccccC
Confidence 357788888999988766332222222222233455666666543 355555566655543211100 011112233
Q ss_pred CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec---CCCcceeEEEeecCCCEEEEcccc-eEEee
Q 026679 144 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN---GNIGVVACLKWAPRRAMFVAASSV-LSFWI 212 (235)
Q Consensus 144 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~-i~iw~ 212 (235)
..++...++..| ++.++.+|.+.++...+........ .|...|+++....++-+++.++|+ ++.++
T Consensus 626 ~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfh 695 (925)
T KOG3522|consen 626 SLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFH 695 (925)
T ss_pred Cccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEec
Confidence 356777777655 5667789999999987654444333 345689999999999999988866 45443
No 465
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.13 E-value=0.98 Score=35.52 Aligned_cols=154 Identities=11% Similarity=0.080 Sum_probs=87.6
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEee-cC-CCccee-EEEEccCCCeEEEecCCCcEEEE-EcCCCcee
Q 026679 60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV-GG-DTAEVC-DIKFSNDGKSMLLTTTNNNIYVL-DAYGGEKR 135 (235)
Q Consensus 60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~-~~~~v~-~~~~~~~~~~l~~~~~d~~i~~~-d~~~~~~~ 135 (235)
+-..|+|+.+..-+. .++.++++.+........... .+ ....|+ .+..-..|..+++.+.||-|.-| |.+.+...
T Consensus 226 llL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p 304 (733)
T COG4590 226 LLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQP 304 (733)
T ss_pred hEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCC
Confidence 567889998877665 678888876644321111110 00 011222 22223356668888889888766 55543221
Q ss_pred -----eeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceE
Q 026679 136 -----CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLS 209 (235)
Q Consensus 136 -----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~ 209 (235)
..+++.+ ..+.-+.-..+.+-+++-...|++.++.....+.+.. +.--..+.-++++|.+.++++-. |.++
T Consensus 305 ~l~h~R~f~l~p--a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp~~~~Ll~e~~gki~ 381 (733)
T COG4590 305 HLNHIRNFKLAP--AEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSPNQAYLLSEDQGKIR 381 (733)
T ss_pred cceeeeccccCc--ccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCcccchheeecCCceE
Confidence 1112211 2222222222345567777888888777544443322 22223567789999999999988 8899
Q ss_pred EeeCCCCC
Q 026679 210 FWIPNPSS 217 (235)
Q Consensus 210 iw~~~~~~ 217 (235)
++.++...
T Consensus 382 ~~~l~Nr~ 389 (733)
T COG4590 382 LAQLENRN 389 (733)
T ss_pred EEEecCCC
Confidence 99887643
No 466
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=94.10 E-value=0.57 Score=38.45 Aligned_cols=76 Identities=11% Similarity=0.171 Sum_probs=45.1
Q ss_pred CCCCEEEEEecCCeEEEEeccCCC-CCCceeEee---------------------cCCCcceeEEEEcc----CCCeEEE
Q 026679 64 QQGLVFAVAMEAGAIKLFDSRSYD-KGPFDTFLV---------------------GGDTAEVCDIKFSN----DGKSMLL 117 (235)
Q Consensus 64 ~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~---------------------~~~~~~v~~~~~~~----~~~~l~~ 117 (235)
++...++++..||.+......... ......... .........+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 367788888899988888766411 000000000 01123455566666 6788999
Q ss_pred ecCCCcEEEEEcCCCceeeeec
Q 026679 118 TTTNNNIYVLDAYGGEKRCGFS 139 (235)
Q Consensus 118 ~~~d~~i~~~d~~~~~~~~~~~ 139 (235)
.+.|+.+++||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999866543
No 467
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.10 E-value=2.1 Score=33.13 Aligned_cols=188 Identities=14% Similarity=0.200 Sum_probs=104.9
Q ss_pred cCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EE--EcCCCCE--EEEEe-cC---CeEEEEeccCCCCCCcee
Q 026679 24 PVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VA--FDQQGLV--FAVAM-EA---GAIKLFDSRSYDKGPFDT 93 (235)
Q Consensus 24 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~--~~~~~~~--l~~~~-~d---g~v~i~d~~~~~~~~~~~ 93 (235)
|...+++....++-+.+||++ |+.++.+.....+- +. |.-.++. |++++ .+ ..|++|.+..... .+..
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g-~L~~ 143 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG-ELTD 143 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT-EEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC-cceE
Confidence 345678888888999999985 55555554333222 22 2224443 34443 32 4799998864221 1111
Q ss_pred Ee-----ecCCCcceeEEEE--cc-CCC-eEEEecCCCcEEEEEcC---CC----ceeeeeccCCCCCcceeeEEeCCCc
Q 026679 94 FL-----VGGDTAEVCDIKF--SN-DGK-SMLLTTTNNNIYVLDAY---GG----EKRCGFSLEPSPNTNTEATFTPDGQ 157 (235)
Q Consensus 94 ~~-----~~~~~~~v~~~~~--~~-~~~-~l~~~~~d~~i~~~d~~---~~----~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (235)
.. +......+..+++ +| +|. +.+....+|.+..|.+. .+ +.++.+... ..+..|.......
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~---sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG---SQPEGCVVDDETG 220 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S---S-EEEEEEETTTT
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC---CcceEEEEecccC
Confidence 10 1111234666766 33 344 55567788988888774 22 345555553 3478899999888
Q ss_pred EEEEeCCCCcEEEEEcCC-----CceeeeecC--CCcceeEEEeec--CC-CEEEEcc---cceEEeeCCCC
Q 026679 158 YVVSGSGDGTLHAWNINT-----RNEVACWNG--NIGVVACLKWAP--RR-AMFVAAS---SVLSFWIPNPS 216 (235)
Q Consensus 158 ~l~~~~~dg~i~v~d~~~-----~~~~~~~~~--~~~~v~~~~~~~--~~-~~l~~~~---~~i~iw~~~~~ 216 (235)
+|+.+-++--|.-|+.+. ++.+....+ ....|..|+... ++ .||++++ +...||+.+..
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 999999998788887752 222322222 345778888764 33 4677766 56999998653
No 468
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.99 E-value=1.1 Score=35.98 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=53.0
Q ss_pred cceeEEEEccCCCeEEEecCCCcEEEEEcC---------CCceeeee---------ccCCCCCcceeeEEeCCC---cEE
Q 026679 101 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAY---------GGEKRCGF---------SLEPSPNTNTEATFTPDG---QYV 159 (235)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~---------~~~~~~~~---------~~~~~~~~i~~~~~~~~~---~~l 159 (235)
..|..+..++.|..++..+.+|.+.++=.+ +++..... ......-.+..++|+|+. ..|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 357778889999999999999876665422 22211110 111112345668899964 677
Q ss_pred EEeCCCCcEEEEEcCCCceeee
Q 026679 160 VSGSGDGTLHAWNINTRNEVAC 181 (235)
Q Consensus 160 ~~~~~dg~i~v~d~~~~~~~~~ 181 (235)
..-+.|..|++||+...+.+..
T Consensus 184 ~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred EEEecCcEEEEEecCCcchhhc
Confidence 7778899999999977665533
No 469
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.91 E-value=2.8 Score=33.84 Aligned_cols=145 Identities=13% Similarity=0.050 Sum_probs=71.8
Q ss_pred ccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCC-cceeEEEEcc
Q 026679 34 LDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT-AEVCDIKFSN 110 (235)
Q Consensus 34 ~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~ 110 (235)
..+...+.|. .|..+..+....... +...++|.+++... ..+..+|..... .....+.... ..=..+...|
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v---~~~~~l~~~~~~~HHD~~~l~ 199 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV---IWEYDLPGGYYDFHHDIDELP 199 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E---EEEEE--TTEE-B-S-EEE-T
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE---EEeeecCCcccccccccEECC
Confidence 4556777774 566666655544433 66778888776655 677777764321 1122222211 1123566788
Q ss_pred CCCeEEEecC-------------CCcEEEEEcCCCceeeeeccCCCC-------------------------CcceeeEE
Q 026679 111 DGKSMLLTTT-------------NNNIYVLDAYGGEKRCGFSLEPSP-------------------------NTNTEATF 152 (235)
Q Consensus 111 ~~~~l~~~~~-------------d~~i~~~d~~~~~~~~~~~~~~~~-------------------------~~i~~~~~ 152 (235)
+|++|+.+.. ...|..+| .+|+.+..+....+- -.+.++.+
T Consensus 200 nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~y 278 (477)
T PF05935_consen 200 NGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDY 278 (477)
T ss_dssp TS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEE
T ss_pred CCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEE
Confidence 8988887762 22355666 666655443221110 23677888
Q ss_pred eC-CCcEEEEeCCCCcEEEEEcCCCceeeeecCC
Q 026679 153 TP-DGQYVVSGSGDGTLHAWNINTRNEVACWNGN 185 (235)
Q Consensus 153 ~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 185 (235)
.+ ++.+|+++-.-..|...|.++++..-.+-.+
T Consensus 279 d~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 279 DPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp ETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred eCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 88 6666666666668888898888776555433
No 470
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.62 E-value=2.2 Score=31.66 Aligned_cols=115 Identities=16% Similarity=0.193 Sum_probs=64.6
Q ss_pred CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEec------CCCcEEEEEcCCCceeeeecc--CCCCCcc
Q 026679 76 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT------TNNNIYVLDAYGGEKRCGFSL--EPSPNTN 147 (235)
Q Consensus 76 g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~--~~~~~~i 147 (235)
..+.+||..+.+. ...-.+-.+.|+.+.|..+.+.++.|. ....+..||..+......-.. ..-++++
T Consensus 16 ~~lC~yd~~~~qW----~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv 91 (281)
T PF12768_consen 16 PGLCLYDTDNSQW----SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPV 91 (281)
T ss_pred CEEEEEECCCCEe----ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcE
Confidence 4688999877654 222233557899999986666555553 355688899877654322111 1234667
Q ss_pred eeeEEeC-CC-cEEEEeC-C--CCcEEEEEcCCCceeee-ecCCCcceeEEEe
Q 026679 148 TEATFTP-DG-QYVVSGS-G--DGTLHAWNINTRNEVAC-WNGNIGVVACLKW 194 (235)
Q Consensus 148 ~~~~~~~-~~-~~l~~~~-~--dg~i~v~d~~~~~~~~~-~~~~~~~v~~~~~ 194 (235)
..+.+.. |+ ++.+.|. . +..|..||-.+...+.. .......|..+.+
T Consensus 92 ~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 92 TALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred EEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 7777643 33 3444443 2 33477777655444433 2222344555544
No 471
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.60 E-value=2.9 Score=32.98 Aligned_cols=182 Identities=16% Similarity=0.186 Sum_probs=96.0
Q ss_pred CeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEecCCeEEEEeccCCCC-----------------
Q 026679 27 DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDK----------------- 88 (235)
Q Consensus 27 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~----------------- 88 (235)
.++..=+.||.+.+++-+.-.....+...-.+. +.+.+....|++++.+..+..|.......
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~ 225 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISS 225 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccc
Confidence 467778999999999966555444554433344 89999999999999998998887532110
Q ss_pred ----CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC----CC---c
Q 026679 89 ----GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP----DG---Q 157 (235)
Q Consensus 89 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~----~~---~ 157 (235)
.+...+.+...--.+..+.++.....+++-+ ...+.+.+. +|......++...+ .....|.. ++ .
T Consensus 226 ~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~G~l~~~krLd~~p--~~~~~Y~~~~~~~~~~~~ 301 (418)
T PF14727_consen 226 GKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-NGSLRFQKRLDYNP--SCFCPYRVPWYNEPSTRL 301 (418)
T ss_pred cccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-CCeEEEEEecCCce--eeEEEEEeecccCCCCce
Confidence 1111222222222233333333333344333 345666664 45655555554332 11111211 22 2
Q ss_pred EEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEee---c-CCCEEEEcc-cceEEeeCCC
Q 026679 158 YVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA---P-RRAMFVAAS-SVLSFWIPNP 215 (235)
Q Consensus 158 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~---~-~~~~l~~~~-~~i~iw~~~~ 215 (235)
.++.++.++.+.||.=.+...-..+ ...+| ++... . +|-.+.-+. |.+.+-=+-+
T Consensus 302 ~llV~t~t~~LlVy~d~~L~WsA~l--~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 302 NLLVGTHTGTLLVYEDTTLVWSAQL--PHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred EEEEEecCCeEEEEeCCeEEEecCC--CCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 4888999999999974333222222 22222 33332 2 333333333 7666665543
No 472
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=93.42 E-value=2.5 Score=31.73 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=51.5
Q ss_pred ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC-------ceEEEcCCCCEEEEEecCCeEEEEecc
Q 026679 16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-------PTVAFDQQGLVFAVAMEAGAIKLFDSR 84 (235)
Q Consensus 16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~dg~v~i~d~~ 84 (235)
-|+++...++|.+|+|+-.-.+|.+.|-++++.+..+.+... ...++-.+-+.+-.+..++.|.+||-.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 367778888899999999889999999999998888866621 224444455555555678899999873
No 473
>PLN02153 epithiospecifier protein
Probab=93.27 E-value=2.9 Score=32.00 Aligned_cols=154 Identities=6% Similarity=-0.026 Sum_probs=70.3
Q ss_pred CCCeeEEEecc-------ceEEEEecCcceeeeeeec---cCC---ceEEEcCCCCEEEEEecC-----CeEEEEeccCC
Q 026679 25 VNDSFMSGSLD-------HSVRIWDLRVNACQGILRL---RGR---PTVAFDQQGLVFAVAMEA-----GAIKLFDSRSY 86 (235)
Q Consensus 25 ~~~~l~s~~~d-------~~i~vwd~~~~~~~~~~~~---~~~---~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~ 86 (235)
++.+++.|+.+ ..+.+||+.+.+-...-.. ... ...+..-++++++.|+.+ ..+.+||+.+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence 35566666653 2577888776532211111 111 111222256677777753 35778888764
Q ss_pred CCCCceeEeecC-CCcceeEEEEccCCCeEEEecCC-----------CcEEEEEcCCCceeeeeccCC--CCCcceeeEE
Q 026679 87 DKGPFDTFLVGG-DTAEVCDIKFSNDGKSMLLTTTN-----------NNIYVLDAYGGEKRCGFSLEP--SPNTNTEATF 152 (235)
Q Consensus 87 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~~~d~~~~~~~~~~~~~~--~~~~i~~~~~ 152 (235)
+........... ........+..-+++.++.|+.+ ..+.+||..+.+-...-.... ....-.+++
T Consensus 112 ~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~- 190 (341)
T PLN02153 112 EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFA- 190 (341)
T ss_pred EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEE-
Confidence 431111000000 00111111222345666666643 247789988765543211110 000011122
Q ss_pred eCCCcEEEEeCCC-------------CcEEEEEcCCCcee
Q 026679 153 TPDGQYVVSGSGD-------------GTLHAWNINTRNEV 179 (235)
Q Consensus 153 ~~~~~~l~~~~~d-------------g~i~v~d~~~~~~~ 179 (235)
.-+++.++.++.+ ..+.+||..+.+-.
T Consensus 191 ~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 191 VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 2356666655432 45888998766543
No 474
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.25 E-value=0.51 Score=23.17 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=23.9
Q ss_pred cCCCeeEEE-eccceEEEEecCcceeeeeeeccC
Q 026679 24 PVNDSFMSG-SLDHSVRIWDLRVNACQGILRLRG 56 (235)
Q Consensus 24 ~~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~ 56 (235)
|++++|+++ ..+++|.++|..+++.+..+....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence 566665554 457899999998888877776644
No 475
>PLN02193 nitrile-specifier protein
Probab=93.11 E-value=3.9 Score=33.00 Aligned_cols=150 Identities=11% Similarity=0.029 Sum_probs=72.1
Q ss_pred CCeeEEEecc-----ceEEEEecCcceeeeeeec---cCCc--eEEEcCCCCEEEEEecCC-----eEEEEeccCCCCCC
Q 026679 26 NDSFMSGSLD-----HSVRIWDLRVNACQGILRL---RGRP--TVAFDQQGLVFAVAMEAG-----AIKLFDSRSYDKGP 90 (235)
Q Consensus 26 ~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~---~~~~--~~~~~~~~~~l~~~~~dg-----~v~i~d~~~~~~~~ 90 (235)
+.+.+.|+.+ ..+.++|+.+.+-...-.. +... ..+..-++++++.|+.++ .+..||+.+.+...
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~ 308 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFH 308 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEe
Confidence 4455566544 3477788776543221111 1111 122223566777776543 46677776643211
Q ss_pred ceeEe-ecCCCcceeEEEEccCCCeEEEecCC----CcEEEEEcCCCceeeeeccC--CCCCcceeeEEeCCCcEEEEeC
Q 026679 91 FDTFL-VGGDTAEVCDIKFSNDGKSMLLTTTN----NNIYVLDAYGGEKRCGFSLE--PSPNTNTEATFTPDGQYVVSGS 163 (235)
Q Consensus 91 ~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~ 163 (235)
..... ........ .++ .-+++.++.++.+ ..+.+||+.+.+....-... ..+....+ +..-++++++.|+
T Consensus 309 ~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~-~~~~~~~iyv~GG 385 (470)
T PLN02193 309 CSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFA-SAAVGKHIVIFGG 385 (470)
T ss_pred CCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeE-EEEECCEEEEECC
Confidence 10000 00001111 122 2256666666654 45899999887654432211 11111111 2233667778887
Q ss_pred CC--------------CcEEEEEcCCCce
Q 026679 164 GD--------------GTLHAWNINTRNE 178 (235)
Q Consensus 164 ~d--------------g~i~v~d~~~~~~ 178 (235)
.. ..+.+||..+.+-
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCEE
Confidence 53 2478888876654
No 476
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=92.82 E-value=3.5 Score=31.71 Aligned_cols=82 Identities=12% Similarity=0.191 Sum_probs=44.2
Q ss_pred CCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CCcEEEEEcCCCce---eeeecCCCcceeEEEee
Q 026679 120 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINTRNE---VACWNGNIGVVACLKWA 195 (235)
Q Consensus 120 ~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~ 195 (235)
.+|++.-||..+......+ ..-.-.+.++.|||+.+++.+-. -..|+-|=++..+. .--.++-.+..-.|.-+
T Consensus 197 ~~GRl~~YD~~tK~~~VLl---d~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~ 273 (376)
T KOG1520|consen 197 PTGRLFRYDPSTKVTKVLL---DGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRD 273 (376)
T ss_pred CccceEEecCcccchhhhh---hcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeEC
Confidence 4677888887655432111 11233567999999999887633 22333333332211 11112234455567777
Q ss_pred cCCCEEEEc
Q 026679 196 PRRAMFVAA 204 (235)
Q Consensus 196 ~~~~~l~~~ 204 (235)
++|.+.+.-
T Consensus 274 ~~G~fWVal 282 (376)
T KOG1520|consen 274 STGHFWVAL 282 (376)
T ss_pred CCCCEEEEE
Confidence 888766554
No 477
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.68 E-value=5.3 Score=33.43 Aligned_cols=151 Identities=13% Similarity=0.145 Sum_probs=80.5
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCc-ceeEEEEcc------CCCeEEEecC-C---CcEEEEE
Q 026679 60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA-EVCDIKFSN------DGKSMLLTTT-N---NNIYVLD 128 (235)
Q Consensus 60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~~~------~~~~l~~~~~-d---~~i~~~d 128 (235)
+.+.++++.+++...+|.|.+||.............. .+.. -+.+ .|-+ ...++++.+. + -..+++.
T Consensus 135 Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~-~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~ 212 (670)
T PF10395_consen 135 IKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKL-KSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLSYKLIS 212 (670)
T ss_pred EEEecCCCEEEEEEcCCcEEEEecccccccccccccc-ccccceehh-hhhcccccccCCceEEEEEEcCCCcEEEEEEE
Confidence 7788999999999999999999993332211111111 1111 1111 2222 2334444444 2 2366777
Q ss_pred c--CCCceeeeec---cCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC-----C-cceeEEEeecC
Q 026679 129 A--YGGEKRCGFS---LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-----I-GVVACLKWAPR 197 (235)
Q Consensus 129 ~--~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----~-~~v~~~~~~~~ 197 (235)
+ ..... .... .+.....-..+++. +|.+... .++.|.+|++...+...++.-. . ..+.++.--..
T Consensus 213 l~~~~~~~-~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~ 288 (670)
T PF10395_consen 213 LSNESSSI-FELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSP 288 (670)
T ss_pred eccCCcce-EEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCC
Confidence 7 22222 2221 11111111223333 5554444 6779999999888776665422 1 22334433234
Q ss_pred CCEEEEcccceEEeeCCCC
Q 026679 198 RAMFVAASSVLSFWIPNPS 216 (235)
Q Consensus 198 ~~~l~~~~~~i~iw~~~~~ 216 (235)
.+.|++..+.|++.|+.-.
T Consensus 289 nRvLLs~~nkIyLld~~~~ 307 (670)
T PF10395_consen 289 NRVLLSVNNKIYLLDLKFE 307 (670)
T ss_pred CeEEEEcCCEEEEEeehhh
Confidence 5777777799999998644
No 478
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.55 E-value=5.9 Score=33.65 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=42.3
Q ss_pred ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC-ceEEEcCCCCEEEEEecCCeEEEEe
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAVAMEAGAIKLFD 82 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~v~i~d 82 (235)
...++++.-+|.++-++.++.||.|++|+....+..+....... ..+.|...| |++...|..+.-|.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee
Confidence 45678888899999999999999999999865544222221111 113443333 44555555555554
No 479
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.42 E-value=4.6 Score=32.05 Aligned_cols=102 Identities=8% Similarity=0.064 Sum_probs=62.2
Q ss_pred CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-ee
Q 026679 57 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KR 135 (235)
Q Consensus 57 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~ 135 (235)
+.++.|++|.+.+|+--.+.+|.+++....+...............|..+.|+.+ .-++.....| +-+|.....+ .+
T Consensus 69 I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrsl 146 (657)
T KOG2377|consen 69 IKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSL 146 (657)
T ss_pred eeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhh
Confidence 4459999999999999999999999985444322223333334456888999876 4456555544 5555543221 11
Q ss_pred eeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679 136 CGFSLEPSPNTNTEATFTPDGQYVVSG 162 (235)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (235)
+. ...+...|.-..|.++.+.++.+
T Consensus 147 Rl--Vks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 147 RL--VKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hh--hhhcccCccEEEEccccceEeee
Confidence 11 12233446667777776655433
No 480
>PLN02153 epithiospecifier protein
Probab=92.32 E-value=4.1 Score=31.24 Aligned_cols=152 Identities=12% Similarity=0.021 Sum_probs=69.9
Q ss_pred CCeeEEEecc-----ceEEEEecCcceee--eeeec---cCCce--EEEcCCCCEEEEEecC-----------CeEEEEe
Q 026679 26 NDSFMSGSLD-----HSVRIWDLRVNACQ--GILRL---RGRPT--VAFDQQGLVFAVAMEA-----------GAIKLFD 82 (235)
Q Consensus 26 ~~~l~s~~~d-----~~i~vwd~~~~~~~--~~~~~---~~~~~--~~~~~~~~~l~~~~~d-----------g~v~i~d 82 (235)
+++++.|+.+ ..+.+||..+.+-. ..+.. +.... .+..-++++++.|+.+ ..+.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 4555666643 24677887765322 11110 11111 2223356777777753 2467788
Q ss_pred ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-------------CCcEEEEEcCCCceeeeeccCCCCCc-ce
Q 026679 83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-------------NNNIYVLDAYGGEKRCGFSLEPSPNT-NT 148 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~~~d~~~~~~~~~~~~~~~~~~-i~ 148 (235)
..+.................-.+++. -+++.++.++. ...+.+||+.+.+-...-.....+.+ ..
T Consensus 166 ~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~ 244 (341)
T PLN02153 166 IADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSV 244 (341)
T ss_pred CCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcce
Confidence 77654311111000000111111222 24555555442 24588999887765533211110111 11
Q ss_pred eeEEeCCCcEEEEeCCC--------------CcEEEEEcCCCce
Q 026679 149 EATFTPDGQYVVSGSGD--------------GTLHAWNINTRNE 178 (235)
Q Consensus 149 ~~~~~~~~~~l~~~~~d--------------g~i~v~d~~~~~~ 178 (235)
..+...++++++.|+.. ..+..||..+.+-
T Consensus 245 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W 288 (341)
T PLN02153 245 FAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVW 288 (341)
T ss_pred eeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEE
Confidence 11222356777888752 2577888866543
No 481
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.24 E-value=2.6 Score=35.58 Aligned_cols=62 Identities=18% Similarity=0.319 Sum_probs=40.3
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEE
Q 026679 60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 128 (235)
Q Consensus 60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 128 (235)
+.-+|.+..++.+..||++.+|+.......... ....+-..+.|...| |++...|..+.-|.
T Consensus 20 iqshp~~~s~v~~~~d~si~lfn~~~r~qski~-----~~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 20 IQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC-----EEAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred eeecCCCceEEEEecCCcEEEEeecccchhhhh-----hhcCCccceeeeccc--eEEEeccchhheee
Confidence 667899999999999999999997654321111 112233445555444 66666777777776
No 482
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.22 E-value=6.2 Score=33.08 Aligned_cols=165 Identities=13% Similarity=0.144 Sum_probs=85.1
Q ss_pred ccceeEEEeecCCCeeEEEeccceEEEEecCcceeee--eeeccCCceEEEc------C---CCCEEEEEec-C---CeE
Q 026679 14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG--ILRLRGRPTVAFD------Q---QGLVFAVAME-A---GAI 78 (235)
Q Consensus 14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~------~---~~~~l~~~~~-d---g~v 78 (235)
.+.|-.+.|.++++.+++.-..|.|.+||...+.... .+......-+.++ . ...++++.+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 4678899999999999999999999999994332222 2221111112221 1 1234433333 2 256
Q ss_pred EEEeccCCCCCCceeEe-ecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCc--ceeeEEe-
Q 026679 79 KLFDSRSYDKGPFDTFL-VGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT--NTEATFT- 153 (235)
Q Consensus 79 ~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--i~~~~~~- 153 (235)
+++.+..... +..... ...+........|.- +|. |..- .+++|.+|++..-+....+....--.. -..+.+.
T Consensus 209 kL~~l~~~~~-~~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 209 KLISLSNESS-SIFELSSTILENFGLEDSKFCYQFGK-LYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEeccCCc-ceEEeehheeccCCcccceEEEeCCE-EEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence 7777722221 111111 011122223333333 444 3333 778999999988877766665421111 1112332
Q ss_pred CCCcEEEEeCCCCcEEEEEcCCCceeeee
Q 026679 154 PDGQYVVSGSGDGTLHAWNINTRNEVACW 182 (235)
Q Consensus 154 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 182 (235)
|..+.++.+. ++.|++.|+.-...+.++
T Consensus 286 ~s~nRvLLs~-~nkIyLld~~~~siLse~ 313 (670)
T PF10395_consen 286 PSPNRVLLSV-NNKIYLLDLKFESILSEF 313 (670)
T ss_pred CCCCeEEEEc-CCEEEEEeehhhhhhhhh
Confidence 2333333332 457999998655444444
No 483
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.22 E-value=3.8 Score=30.63 Aligned_cols=169 Identities=12% Similarity=0.192 Sum_probs=85.8
Q ss_pred eEEEEecCcceeeeeeeccCCc--------eEEEcCCC-----CEEEEE-ecCCeEEEEeccCCCCCCce----------
Q 026679 37 SVRIWDLRVNACQGILRLRGRP--------TVAFDQQG-----LVFAVA-MEAGAIKLFDSRSYDKGPFD---------- 92 (235)
Q Consensus 37 ~i~vwd~~~~~~~~~~~~~~~~--------~~~~~~~~-----~~l~~~-~~dg~v~i~d~~~~~~~~~~---------- 92 (235)
.|.+||+.+++.++.+..+... .+.+.... .++..+ ...+-+.++|+.+++.....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6889999999998888765421 14554421 233333 34468999998875431100
Q ss_pred -eEeecC----CCcceeEEEEcc---CCCeEEEecCCC-cEEEEEc---CCCceee------eec-cCCCCCcceeeEEe
Q 026679 93 -TFLVGG----DTAEVCDIKFSN---DGKSMLLTTTNN-NIYVLDA---YGGEKRC------GFS-LEPSPNTNTEATFT 153 (235)
Q Consensus 93 -~~~~~~----~~~~v~~~~~~~---~~~~l~~~~~d~-~i~~~d~---~~~~~~~------~~~-~~~~~~~i~~~~~~ 153 (235)
.+...+ ....+..++.+| +++.|....-.+ .++-... ++..... .++ +.........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 010000 112355566655 555555544332 1222211 1111100 000 00111245668999
Q ss_pred CCCcEEEEeCCCCcEEEEEcCCCc---eeeee-cCC--CcceeEEEeec--CCCEEEEcc
Q 026679 154 PDGQYVVSGSGDGTLHAWNINTRN---EVACW-NGN--IGVVACLKWAP--RRAMFVAAS 205 (235)
Q Consensus 154 ~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~-~~~--~~~v~~~~~~~--~~~~l~~~~ 205 (235)
++|.++++--..+.|..|+..+.- ....+ +.. -..+.++.+.+ +|.+.+.+.
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 999999999999999999987511 11222 212 34678899998 777666554
No 484
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.13 E-value=2.7 Score=28.69 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=24.8
Q ss_pred cceeEEEEccCC------CeEEEecCCCcEEEEEcCC
Q 026679 101 AEVCDIKFSNDG------KSMLLTTTNNNIYVLDAYG 131 (235)
Q Consensus 101 ~~v~~~~~~~~~------~~l~~~~~d~~i~~~d~~~ 131 (235)
..+..++|||.| -.|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999954 3678888999999998653
No 485
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.13 E-value=8.7 Score=34.63 Aligned_cols=138 Identities=13% Similarity=0.145 Sum_probs=78.4
Q ss_pred ecCCeEEEEeccCCCCCCceeEeecCCCcceeEEE--------EccCCCeEEEecCCCcEEEEEcCCCce-------eee
Q 026679 73 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK--------FSNDGKSMLLTTTNNNIYVLDAYGGEK-------RCG 137 (235)
Q Consensus 73 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~d~~i~~~d~~~~~~-------~~~ 137 (235)
+-|+.+.+|+.++... .....+....|..+. |.|.=++++..+.--.|.++-+.-.+. ...
T Consensus 96 TiDn~L~lWny~~~~e----~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~ 171 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNE----LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTS 171 (1311)
T ss_pred EeCCeEEEEEcCCCCc----cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccc
Confidence 4578899999988443 222223333344333 233334555555555566654432111 111
Q ss_pred eccCCCCCcceeeEEeCCCcEEEEeCCCCcEEE--EEcCCC---c-e----------------eeeec-CCCcceeEEEe
Q 026679 138 FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA--WNINTR---N-E----------------VACWN-GNIGVVACLKW 194 (235)
Q Consensus 138 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v--~d~~~~---~-~----------------~~~~~-~~~~~v~~~~~ 194 (235)
++.......|+++....+|+.+++|-.+ .|+= |...++ + + +..+. .+..+|..+..
T Consensus 172 ~~i~~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I 250 (1311)
T KOG1900|consen 172 FKISVDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI 250 (1311)
T ss_pred eeeecCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence 3333444668888888888877766544 3332 222111 1 0 11223 45679999999
Q ss_pred ecCCCEEEEcc--cceEEeeCCC
Q 026679 195 APRRAMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 195 ~~~~~~l~~~~--~~i~iw~~~~ 215 (235)
......+.+-+ +.+.+|++..
T Consensus 251 D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 251 DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccceeeeeccCceEEEEEccC
Confidence 88777777776 8899999976
No 486
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.73 E-value=4.1 Score=30.02 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=93.8
Q ss_pred eEEEcCCCCEEEEEec---------CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEc
Q 026679 59 TVAFDQQGLVFAVAME---------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 129 (235)
Q Consensus 59 ~~~~~~~~~~l~~~~~---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 129 (235)
...|.+.|++-+++.. .+.+++|+... ...-+.++..|+|+.-++.-.+..|...|.
T Consensus 152 t~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq--------------G~gpyGi~atpdGsvwyaslagnaiaridp 217 (353)
T COG4257 152 TAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ--------------GGGPYGICATPDGSVWYASLAGNAIARIDP 217 (353)
T ss_pred ceeeCCCccEEEeeccccceecCcccCceeeeccCC--------------CCCCcceEECCCCcEEEEeccccceEEccc
Confidence 4788999988888752 23444554432 234567888999998888777888888888
Q ss_pred CCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCcee-eeecCCCcceeEEEeecCCCEEEEc-c-c
Q 026679 130 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV-ACWNGNIGVVACLKWAPRRAMFVAA-S-S 206 (235)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~-~-~ 206 (235)
.++.....-.........+.+--+|.|+.-++....+.+..||-.+..-. ..+.+....-.++.....++.-.+- + +
T Consensus 218 ~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~ag 297 (353)
T COG4257 218 FAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAG 297 (353)
T ss_pred ccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccC
Confidence 77643222222221233455666788888888777888888887544321 2233344455666666666655532 2 5
Q ss_pred ceEEeeCCCCCCCCCCCCC
Q 026679 207 VLSFWIPNPSSNSTDESTD 225 (235)
Q Consensus 207 ~i~iw~~~~~~~~~~~~~~ 225 (235)
.|.-+|.++.....++...
T Consensus 298 ai~rfdpeta~ftv~p~pr 316 (353)
T COG4257 298 AIGRFDPETARFTVLPIPR 316 (353)
T ss_pred ceeecCcccceEEEecCCC
Confidence 5666666665555444433
No 487
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.62 E-value=4.4 Score=30.17 Aligned_cols=144 Identities=13% Similarity=0.156 Sum_probs=90.1
Q ss_pred CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceee---eeccC
Q 026679 65 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC---GFSLE 141 (235)
Q Consensus 65 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~---~~~~~ 141 (235)
.+++...+..+.-+++.|+.+.+.+....+. ...+.-.++.. .|++...+..+.-..++|+.+.+... .+...
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~l--nt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~ 170 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFL--NTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALP 170 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccc--cCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccC
Confidence 4567778888889999999988753322211 11133344444 58888888866667888987654332 22222
Q ss_pred CCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCcee---eeecCCCcceeEEEeecCCCEEEEcccceEEeeCCCCC
Q 026679 142 PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV---ACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSS 217 (235)
Q Consensus 142 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~~ 217 (235)
. .....++. .|++-..+..|+-+.+.|+.+.... .... -...+.++..+++..+++..+.-+.+-|.++.+
T Consensus 171 ~--~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~s 244 (370)
T COG5276 171 G--GDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPS 244 (370)
T ss_pred C--CCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcccceEEEecCCCC
Confidence 1 22234555 4566667778888999999765432 2221 223688888898888888887666666665543
No 488
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=91.29 E-value=4.8 Score=29.95 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=47.7
Q ss_pred CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC------CCCcEEEEEcCCCceeeeecC-----CCcce
Q 026679 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS------GDGTLHAWNINTRNEVACWNG-----NIGVV 189 (235)
Q Consensus 121 d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~v~d~~~~~~~~~~~~-----~~~~v 189 (235)
-..|.+||..+.+....- ..-.+.|+.+.|..+.++++.|. ....+..||..+.... .+.. -.++|
T Consensus 15 C~~lC~yd~~~~qW~~~g--~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv 91 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPG--NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPV 91 (281)
T ss_pred CCEEEEEECCCCEeecCC--CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcE
Confidence 345999998777655432 22447799999987777777663 3556888998766532 2222 24678
Q ss_pred eEEEeec
Q 026679 190 ACLKWAP 196 (235)
Q Consensus 190 ~~~~~~~ 196 (235)
..+.+..
T Consensus 92 ~a~~~~~ 98 (281)
T PF12768_consen 92 TALTFIS 98 (281)
T ss_pred EEEEeec
Confidence 7777643
No 489
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.10 E-value=6.8 Score=31.38 Aligned_cols=103 Identities=13% Similarity=0.199 Sum_probs=57.8
Q ss_pred cceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc-----CCCCCcceeeEEeCCC------cEEEEeC------
Q 026679 101 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-----EPSPNTNTEATFTPDG------QYVVSGS------ 163 (235)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~------~~l~~~~------ 163 (235)
.....|+|.|||+.|++--..|.|++++..++.......+ .........++++|+- .+|....
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 4567899999998665544469999998655432211111 1123557889999874 2343321
Q ss_pred ----CCCcEEEEEcCCC-------ceee-eec---CCCcceeEEEeecCCCEEEEcc
Q 026679 164 ----GDGTLHAWNINTR-------NEVA-CWN---GNIGVVACLKWAPRRAMFVAAS 205 (235)
Q Consensus 164 ----~dg~i~v~d~~~~-------~~~~-~~~---~~~~~v~~~~~~~~~~~l~~~~ 205 (235)
....|.-|.+... +.+. .+. .|. -..|.|.|||.+.++.+
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~G 164 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIG 164 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEEC
Confidence 1233544554321 1111 111 232 35788999998776554
No 490
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=91.03 E-value=10 Score=33.41 Aligned_cols=172 Identities=14% Similarity=0.123 Sum_probs=96.3
Q ss_pred eEEEEecCcceeeeeeeccCC------ceEEEcCCCC--EEEEEe-----------cCCeEEEEeccCCCCCCceeEeec
Q 026679 37 SVRIWDLRVNACQGILRLRGR------PTVAFDQQGL--VFAVAM-----------EAGAIKLFDSRSYDKGPFDTFLVG 97 (235)
Q Consensus 37 ~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~~--~l~~~~-----------~dg~v~i~d~~~~~~~~~~~~~~~ 97 (235)
.|++.|..++..+..+..... ....|+..+. +++++. .+|.++.|++-.... .+......
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~-~lellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD-KLELLHKT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc-eeeeeecc
Confidence 478888877776666654432 2245554332 344433 245577776544332 11111112
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcC-CC
Q 026679 98 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN-TR 176 (235)
Q Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~ 176 (235)
.-...+ .+..|-..++++ +-...+++||+...+.++......-+..|+.+.+ .+..+++|...-.+.++..+ .+
T Consensus 933 ~~~~~v--~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen 933 EIPGPV--GAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred CCCccc--eEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCC
Confidence 222333 355665555554 4566899999998888777666655566777766 56678888766566655443 34
Q ss_pred ceeeeecCC--CcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679 177 NEVACWNGN--IGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 215 (235)
Q Consensus 177 ~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~ 215 (235)
+.+..+... ...|+++.+- |...++.++ |++.+-.+..
T Consensus 1008 n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1008 NQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 444444322 2345555443 556777777 6666655543
No 491
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.85 E-value=10 Score=32.89 Aligned_cols=202 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred ccccceeEEEeecCCC----------eeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEE
Q 026679 12 GHKERVISLCMSPVND----------SFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLF 81 (235)
Q Consensus 12 ~h~~~v~~~~~~~~~~----------~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~ 81 (235)
|..+.+..++.-.... ..+..-....-..|.+..+.++..+.... ..-.+.+..++|++-....+..+-
T Consensus 35 Gesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~~~PI~qI~fa~-~~~~~~~~~~~l~Vrt~~st~I~~ 113 (765)
T PF10214_consen 35 GESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWSIDDGSPIKQIKFAT-LSESFDEKSRWLAVRTETSTTILR 113 (765)
T ss_pred CCCCCeeEEEEecccccccccccccccccCCCCccccceeEcCCCCCeeEEEecc-cccccCCcCcEEEEEcCCEEEEEE
Q ss_pred ----------eccCCCCCCceeEeecCCC---cceeEEEEcc-CCCeEEEecCCCcEEEEEc--CCCceeeeeccCCCCC
Q 026679 82 ----------DSRSYDKGPFDTFLVGGDT---AEVCDIKFSN-DGKSMLLTTTNNNIYVLDA--YGGEKRCGFSLEPSPN 145 (235)
Q Consensus 82 ----------d~~~~~~~~~~~~~~~~~~---~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~--~~~~~~~~~~~~~~~~ 145 (235)
+.......+.....+..+. .+..+++|+| +.+.||+....|...+|++ +.......+.......
T Consensus 114 p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~ 193 (765)
T PF10214_consen 114 PEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNIS 193 (765)
T ss_pred cccccccccccCCccccccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCC
Q ss_pred cce-----------eeEEeCCCcEEEEeCCCCcEEEEEcCCCce--eeeecCCCcceeEEEeecC--CCEEEEcccceEE
Q 026679 146 TNT-----------EATFTPDGQYVVSGSGDGTLHAWNINTRNE--VACWNGNIGVVACLKWAPR--RAMFVAASSVLSF 210 (235)
Q Consensus 146 ~i~-----------~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~i~i 210 (235)
.-. .+.|.++.+.|+.++.. .+.++|+++... .-........|..+.-+|. +..++..+..|..
T Consensus 194 gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw 272 (765)
T PF10214_consen 194 GSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIW 272 (765)
T ss_pred ccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEE
Q ss_pred eeCCC
Q 026679 211 WIPNP 215 (235)
Q Consensus 211 w~~~~ 215 (235)
.++..
T Consensus 273 ~~~~~ 277 (765)
T PF10214_consen 273 LDVKS 277 (765)
T ss_pred EEccC
No 492
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=90.56 E-value=2.4 Score=25.27 Aligned_cols=43 Identities=16% Similarity=0.324 Sum_probs=29.0
Q ss_pred eCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679 162 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205 (235)
Q Consensus 162 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 205 (235)
+..+|.+.-||..+++....+.+ -.....++.+||+.+++.+-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEe
Confidence 34567888999988775444433 34668999999999888875
No 493
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.46 E-value=6.9 Score=30.39 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=0.0
Q ss_pred CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCC-ccee
Q 026679 112 GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI-GVVA 190 (235)
Q Consensus 112 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~ 190 (235)
...++++..+|.|.-+|..++..+-..........+..-.+..+|+ ++.++.+|.++.+|.++|+.+-...... ..+.
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Q ss_pred EEEeecCCCEEEEcc-cceEEeeCCCCCC
Q 026679 191 CLKWAPRRAMFVAAS-SVLSFWIPNPSSN 218 (235)
Q Consensus 191 ~~~~~~~~~~l~~~~-~~i~iw~~~~~~~ 218 (235)
.-..-.++..++... +.+...+.++++.
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~ 175 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTGTL 175 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCCcE
No 494
>PLN02193 nitrile-specifier protein
Probab=90.20 E-value=8.7 Score=31.07 Aligned_cols=112 Identities=5% Similarity=0.010 Sum_probs=55.0
Q ss_pred CCCCEEEEEecC-----CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC-----CcEEEEEcCCCc
Q 026679 64 QQGLVFAVAMEA-----GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGE 133 (235)
Q Consensus 64 ~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~ 133 (235)
-++.+++.|+.+ ..+..||+.+.+...............-.+++ .-+++.++.|+.+ ..+..||+.+.+
T Consensus 227 ~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 227 IGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred ECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 356677777654 35778888765431111000000111111222 2245666666654 347788887765
Q ss_pred eeeeeccC---CCCCcceeeEEeCCCcEEEEeCCC----CcEEEEEcCCCce
Q 026679 134 KRCGFSLE---PSPNTNTEATFTPDGQYVVSGSGD----GTLHAWNINTRNE 178 (235)
Q Consensus 134 ~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~~~ 178 (235)
....-... ..... ..++ .-+++.++.++.+ ..+.+||+.+.+-
T Consensus 306 W~~~~~~~~~~~~R~~-~~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 306 WFHCSTPGDSFSIRGG-AGLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred EEeCCCCCCCCCCCCC-cEEE-EECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 44321110 00111 1122 2356777777655 4589999887654
No 495
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.07 E-value=7.7 Score=30.27 Aligned_cols=12 Identities=8% Similarity=0.180 Sum_probs=8.6
Q ss_pred eEEEEeccCCCC
Q 026679 77 AIKLFDSRSYDK 88 (235)
Q Consensus 77 ~v~i~d~~~~~~ 88 (235)
.+.+||..+...
T Consensus 190 ~v~~YD~~t~~W 201 (376)
T PRK14131 190 EVLSYDPSTNQW 201 (376)
T ss_pred eEEEEECCCCee
Confidence 578888877554
No 496
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=90.03 E-value=5.9 Score=33.84 Aligned_cols=91 Identities=12% Similarity=0.149 Sum_probs=51.7
Q ss_pred EEEcCCCCEEEEEecCC-----eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce
Q 026679 60 VAFDQQGLVFAVAMEAG-----AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 134 (235)
Q Consensus 60 ~~~~~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 134 (235)
+.|-|+|..+++-..|| .|..+..+....+.... -.+....+...+|+-....++ ....+.+.+|-..+-..
T Consensus 252 LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~l--r~~~dEk~~~~~wn~~s~vla-v~~~n~~~lwttkNyhW 328 (1243)
T COG5290 252 LSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDL--RVGCDEKAFLENWNLLSTVLA-VAEGNLLKLWTTKNYHW 328 (1243)
T ss_pred cccccCCceeeeeccCCCCCcceEEEEccCCcccCCccc--cCCchhhhhhhhhhHHHHHHH-HhhcceEEEEEccceEE
Confidence 89999999999877554 45555544333211111 112334566677776555443 34566799998765443
Q ss_pred eeeeccCCCCCcceeeEEeCC
Q 026679 135 RCGFSLEPSPNTNTEATFTPD 155 (235)
Q Consensus 135 ~~~~~~~~~~~~i~~~~~~~~ 155 (235)
........ ..+.-+.|+|.
T Consensus 329 YLK~e~~i--p~~s~vkwhpe 347 (1243)
T COG5290 329 YLKVERQI--PGISYVKWHPE 347 (1243)
T ss_pred EEEEeecC--CCcceeeeccc
Confidence 32222222 22555788884
No 497
>PRK10115 protease 2; Provisional
Probab=89.87 E-value=12 Score=32.06 Aligned_cols=193 Identities=13% Similarity=0.076 Sum_probs=91.7
Q ss_pred eEEEeecCCCeeEEEecc------ceEEEEecCcc--eeeeeeeccCCce--EEE-cCCCCEEEEEec---CCeEEEEec
Q 026679 18 ISLCMSPVNDSFMSGSLD------HSVRIWDLRVN--ACQGILRLRGRPT--VAF-DQQGLVFAVAME---AGAIKLFDS 83 (235)
Q Consensus 18 ~~~~~~~~~~~l~s~~~d------~~i~vwd~~~~--~~~~~~~~~~~~~--~~~-~~~~~~l~~~~~---dg~v~i~d~ 83 (235)
..++|.+|++.|+....+ ..|+.+++.++ +....+....... ..+ +.+++.++..+. ++.+.+++.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 458999998766655432 35777888877 3334444322222 223 337776665543 457888885
Q ss_pred cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC----CCcEEEEEcCC-CceeeeeccCCCCCcceeeEEeCCCcE
Q 026679 84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT----NNNIYVLDAYG-GEKRCGFSLEPSPNTNTEATFTPDGQY 158 (235)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (235)
........ .. ..........+. +. +..+...+. ...|...++.. ++.. .+..+.....+..+.+. .+.+
T Consensus 255 ~~~~~~~~-~~-~~~~~~~~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~-~l~~~~~~~~i~~~~~~-~~~l 328 (686)
T PRK10115 255 ELADAEPF-VF-LPRRKDHEYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWE-ELIPPRENIMLEGFTLF-TDWL 328 (686)
T ss_pred cCCCCCce-EE-EECCCCCEEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCcccCe-EEECCCCCCEEEEEEEE-CCEE
Confidence 43222111 11 111112222222 22 233443333 22354455542 2222 22222222357777776 3345
Q ss_pred EEEeCCCCcEE--EEEcCCCceeeeec-CCCcceeEEEee--cCC-CEEEEcc-----cceEEeeCCCCC
Q 026679 159 VVSGSGDGTLH--AWNINTRNEVACWN-GNIGVVACLKWA--PRR-AMFVAAS-----SVLSFWIPNPSS 217 (235)
Q Consensus 159 l~~~~~dg~i~--v~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~-~~l~~~~-----~~i~iw~~~~~~ 217 (235)
+++...+|.-+ +++...+ .+..+. .....+..+.++ +++ .++++.+ ..+..+|+.+.+
T Consensus 329 ~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 329 VVEERQRGLTSLRQINRKTR-EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEeCCEEEEEEEcCCCC-ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 56666666644 4454333 333332 222233334444 333 3444333 668888887654
No 498
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.72 E-value=7 Score=29.33 Aligned_cols=116 Identities=14% Similarity=0.159 Sum_probs=72.1
Q ss_pred ceeEEEEccCCCeEEEecCCCcEEEEEcC------CCce-eeeeccCC---CCCcceeeEEeCCCcE------------E
Q 026679 102 EVCDIKFSNDGKSMLLTTTNNNIYVLDAY------GGEK-RCGFSLEP---SPNTNTEATFTPDGQY------------V 159 (235)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~------~~~~-~~~~~~~~---~~~~i~~~~~~~~~~~------------l 159 (235)
.-..++++|.+...++....+...+||.. ..+. +..+.... .+...+.+.|+....+ +
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35689999998877777778899999986 1222 21122111 2245677888754333 5
Q ss_pred EEeCCCCcEEEEEcCCCce-----eeeec-C-CCcceeEEEeecC--CCEEEEcc---cceEEeeCCCCC
Q 026679 160 VSGSGDGTLHAWNINTRNE-----VACWN-G-NIGVVACLKWAPR--RAMFVAAS---SVLSFWIPNPSS 217 (235)
Q Consensus 160 ~~~~~dg~i~v~d~~~~~~-----~~~~~-~-~~~~v~~~~~~~~--~~~l~~~~---~~i~iw~~~~~~ 217 (235)
+.+++||+|.-|...-+.. ...+. . .......+++... +.+|..+. +.|.|+|-.-.+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~ 173 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP 173 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc
Confidence 6788999999998532222 12222 1 1234456666644 67888886 789999865543
No 499
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=89.60 E-value=1.1 Score=20.52 Aligned_cols=24 Identities=38% Similarity=0.335 Sum_probs=19.7
Q ss_pred EEEEeCCCCcEEEEEcCCCceeee
Q 026679 158 YVVSGSGDGTLHAWNINTRNEVAC 181 (235)
Q Consensus 158 ~l~~~~~dg~i~v~d~~~~~~~~~ 181 (235)
.++.++.+|.+..+|.++|+.+-.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 577788899999999988887644
No 500
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.50 E-value=1.2 Score=21.50 Aligned_cols=29 Identities=21% Similarity=0.046 Sum_probs=16.5
Q ss_pred cccceeEEEeecCCCeeEEEe-cc--ceEEEE
Q 026679 13 HKERVISLCMSPVNDSFMSGS-LD--HSVRIW 41 (235)
Q Consensus 13 h~~~v~~~~~~~~~~~l~s~~-~d--~~i~vw 41 (235)
....-....|+|||+.|+-++ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344566778888887765444 33 444444
Done!