BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026681
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ORN|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Guanine Complex
pdb|1ORP|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Adenine Complex
Length = 226
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 7/136 (5%)
Query: 73 IYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQG 132
I + Y KA N++K+ + + KY+G++P DEL+ LPG+G K AN+V+++ F V
Sbjct: 80 IRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVA-FGVPA 138
Query: 133 ICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTIC 192
I VDTHV R+ RLG+ + S + + L + +PKEEW + ++ FG+ C
Sbjct: 139 IAVDTHVERVSKRLGFC------RWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHC 192
Query: 193 TPLRPRCGMCTVSEYC 208
P+C C + C
Sbjct: 193 KAQSPQCPSCPLLHLC 208
>pdb|1P59|A Chain A, Structure Of A Non-Covalent Endonuclease Iii-Dna Complex
Length = 226
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 7/136 (5%)
Query: 73 IYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQG 132
I + Y KA N++K+ + + KY+G++P DEL+ LPG+G K AN+V++ F V
Sbjct: 80 IRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSTA-FGVPA 138
Query: 133 ICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTIC 192
I VDTHV R+ RLG+ + S + + L + +PKEEW + ++ FG+ C
Sbjct: 139 IAVDTHVERVSKRLGFC------RWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHC 192
Query: 193 TPLRPRCGMCTVSEYC 208
P+C C + C
Sbjct: 193 KAQSPQCPSCPLLHLC 208
>pdb|2ABK|A Chain A, Refinement Of The Native Structure Of Endonuclease Iii To
A Resolution Of 1.85 Angstrom
Length = 211
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 12/142 (8%)
Query: 69 IKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMT--LG 126
+K I + Y KA N+ K +I L +++G++P L ALPG+G K AN+V+ G
Sbjct: 72 VKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFG 131
Query: 127 WFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVG 186
W I VDTH+ R+CNR + PG + EQ E L + +P E V + L+
Sbjct: 132 W---PTIAVDTHIFRVCNRTQFA--PG-----KNVEQVEEKLLKVVPAEFKVDCHHWLIL 181
Query: 187 FGQTICTPLRPRCGMCTVSEYC 208
G+ C +PRCG C + + C
Sbjct: 182 HGRYTCIARKPRCGSCIIEDLC 203
>pdb|3FSP|A Chain A, Muty Adenine Glycosylase Bound To A Transition State
Analog (1n) Paired With Dg In Duplexed Dna
pdb|3FSQ|A Chain A, Muty Adenine Glycosylase Bound To A Transition State
Analog (1n) Paired With D(8-Oxog) In Duplexed Dna
Length = 369
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 57 TAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGP 116
T EA+ ADE + + +Y+R N+ K T+Y G +P DE L G+GP
Sbjct: 70 TLEALADADEDEVLKAWEGLGYYSR-VRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGP 128
Query: 117 KMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEE 176
V++L + V VD +V R+ +RL VT K S+ ++ + ++ + E
Sbjct: 129 YTVGAVLSLA-YGVPEPAVDGNVMRVLSRLFLVTD--DIAKPSTRKRFEQIVREIMAYEN 185
Query: 177 WVRINPLLVGFGQTICTPLRPRCGMCTVSEYC 208
N L+ G +CTP RP C +C V YC
Sbjct: 186 PGAFNEALIELGALVCTPRRPSCLLCPVQAYC 217
>pdb|3G0Q|A Chain A, Crystal Structure Of Muty Bound To Its Inhibitor Dna
Length = 352
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 57 TAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGP 116
T EA+ ADE + + +Y+R N+ K T+Y G +P DE L G+GP
Sbjct: 59 TLEALADADEDEVLKAWEGLGYYSR-VRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGP 117
Query: 117 KMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEE 176
V++L + V VD +V R+ +RL VT K S+ ++ + ++ + E
Sbjct: 118 YTVGAVLSLA-YGVPEPAVDGNVMRVLSRLFLVTD--DIAKCSTRKRFEQIVREIMAYEN 174
Query: 177 WVRINPLLVGFGQTICTPLRPRCGMCTVSEYC 208
N L+ G +CTP RP C +C V YC
Sbjct: 175 PGAFNEALIELGALVCTPRRPSCLLCPVQAYC 206
>pdb|1RRS|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
Abasic Site
pdb|1VRL|A Chain A, Muty Adenine Glycosylase In Complex With Dna And Soaked
Adenine Free Base
Length = 369
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 57 TAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGP 116
T EA+ ADE + + +Y+R N+ K T+Y G +P DE L G+GP
Sbjct: 70 TLEALADADEDEVLKAWEGLGYYSR-VRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGP 128
Query: 117 KMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEE 176
V++L + V V+ +V R+ +RL VT K S+ ++ + ++ + E
Sbjct: 129 YTVGAVLSLA-YGVPEPAVNGNVMRVLSRLFLVTD--DIAKPSTRKRFEQIVREIMAYEN 185
Query: 177 WVRINPLLVGFGQTICTPLRPRCGMCTVSEYC 208
N L+ G +CTP RP C +C V YC
Sbjct: 186 PGAFNEALIELGALVCTPRRPSCLLCPVQAYC 217
>pdb|1RRQ|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
A:oxog Pair
Length = 369
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 57 TAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGP 116
T EA+ ADE + + +Y+R N+ K T+Y G +P DE L G+GP
Sbjct: 70 TLEALADADEDEVLKAWEGLGYYSR-VRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGP 128
Query: 117 KMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEE 176
V++L + V V+ +V R+ +RL VT K S+ ++ + ++ + E
Sbjct: 129 YTVGAVLSLA-YGVPEPAVNGNVMRVLSRLFLVTD--DIAKCSTRKRFEQIVREIMAYEN 185
Query: 177 WVRINPLLVGFGQTICTPLRPRCGMCTVSEYC 208
N L+ G +CTP RP C +C V YC
Sbjct: 186 PGAFNEALIELGALVCTPRRPSCLLCPVQAYC 217
>pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna Glycosylase
Length = 221
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 4/150 (2%)
Query: 59 EAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKM 118
E I K ++ I I + ++A +K++A++ + Y G +P + +L LPG+G
Sbjct: 68 EDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYT 127
Query: 119 ANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWV 178
VM L F + VD + R+ NR + + + E L +P +
Sbjct: 128 CAAVMCLA-FGKKAAMVDANFVRVINRYFGGSYENLNYNHKALWELAETL---VPGGKCR 183
Query: 179 RINPLLVGFGQTICTPLRPRCGMCTVSEYC 208
N L+ F IC P +P+C C +S+ C
Sbjct: 184 DFNLGLMDFSAIICAPRKPKCEKCGMSKLC 213
>pdb|1KG5|A Chain A, Crystal Structure Of The K142q Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 11/137 (8%)
Query: 79 YTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTH 138
Y +A N+ K A+ T + G P + +E+ ALPG+G A +++L +D +
Sbjct: 82 YYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLS-LGKHFPILDGN 140
Query: 139 VHRICNRL----GWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTP 194
V R+ R GW PG K+ + E + P R N ++ G ICT
Sbjct: 141 VQRVLARCYAVSGW---PGKKEVENKLWSLSEQVT---PAVGVERFNQAMMDLGAMICTR 194
Query: 195 LRPRCGMCTVSEYCPSA 211
+P+C +C + C +A
Sbjct: 195 SKPKCSLCPLQNGCIAA 211
>pdb|1KG7|A Chain A, Crystal Structure Of The E161a Mutant Of E.coli Muty (core
Fragment)
Length = 225
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 11/137 (8%)
Query: 79 YTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTH 138
Y +A N+ K A+ T + G P + +E+ ALPG+G A +++L +D +
Sbjct: 82 YYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLS-LGKHFPILDGN 140
Query: 139 VHRICNRL----GWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTP 194
V R+ R GW PG K+ + E + P R N ++ G ICT
Sbjct: 141 VKRVLARCYAVSGW---PGKKEVANKLWSLSEQVT---PAVGVERFNQAMMDLGAMICTR 194
Query: 195 LRPRCGMCTVSEYCPSA 211
+P+C +C + C +A
Sbjct: 195 SKPKCSLCPLQNGCIAA 211
>pdb|1KG6|A Chain A, Crystal Structure Of The K142r Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 11/137 (8%)
Query: 79 YTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTH 138
Y +A N+ K A+ T + G P + +E+ ALPG+G A +++L +D +
Sbjct: 82 YYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLS-LGKHFPILDGN 140
Query: 139 VHRICNRL----GWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTP 194
V R+ R GW PG K+ + E + P R N ++ G ICT
Sbjct: 141 VRRVLARCYAVSGW---PGKKEVENKLWSLSEQVT---PAVGVERFNQAMMDLGAMICTR 194
Query: 195 LRPRCGMCTVSEYCPSA 211
+P+C +C + C +A
Sbjct: 195 SKPKCSLCPLQNGCIAA 211
>pdb|1WEF|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
pdb|1WEI|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
Complexed To Adenine
Length = 225
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 11/137 (8%)
Query: 79 YTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTH 138
Y +A N+ K A+ T + G P + +E+ ALPG+G A +++L +D +
Sbjct: 82 YYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLS-LGKHFPILDGN 140
Query: 139 VHRICNRL----GWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTP 194
V R+ R GW PG K+ + E + P R N ++ G ICT
Sbjct: 141 VKRVLARCYAVSGW---PGKKEVENKLWSLSEQVT---PAVGVERFNQAMMDLGAMICTR 194
Query: 195 LRPRCGMCTVSEYCPSA 211
+P+C +C + C +A
Sbjct: 195 SKPKCSLCPLQNGCIAA 211
>pdb|1MUY|A Chain A, Catalytic Domain Of Muty From Escherichia Coli
pdb|1KG2|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.2a Resolution
pdb|1KG3|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.55a Resolution
Length = 225
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 11/137 (8%)
Query: 79 YTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTH 138
Y +A N+ K A+ T + G P + +E+ ALPG+G A +++L +D +
Sbjct: 82 YYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLS-LGKHFPILDGN 140
Query: 139 VHRICNRL----GWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTP 194
V R+ R GW PG K+ + E + P R N ++ G ICT
Sbjct: 141 VKRVLARCYAVSGW---PGKKEVENKLWSLSEQVT---PAVGVERFNQAMMDLGAMICTR 194
Query: 195 LRPRCGMCTVSEYCPSA 211
+P+C +C + C +A
Sbjct: 195 SKPKCSLCPLQNGCIAA 211
>pdb|1KG4|A Chain A, Crystal Structure Of The K142a Mutant Of E. Coli Muty
(Core Fragment)
pdb|1WEG|A Chain A, Catalytic Domain Od Muty Form Escherichia Coli K142a
Mutant
Length = 225
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 11/137 (8%)
Query: 79 YTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTH 138
Y +A N+ K A+ T + G P + +E+ ALPG+G A +++L +D +
Sbjct: 82 YYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLS-LGKHFPILDGN 140
Query: 139 VHRICNRL----GWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTP 194
V R+ R GW PG K+ + E + P R N ++ G ICT
Sbjct: 141 VARVLARCYAVSGW---PGKKEVENKLWSLSEQVT---PAVGVERFNQAMMDLGAMICTR 194
Query: 195 LRPRCGMCTVSEYCPSA 211
+P+C +C + C +A
Sbjct: 195 SKPKCSLCPLQNGCIAA 211
>pdb|1MUD|A Chain A, Catalytic Domain Of Muty From Escherichia Coli, D138n
Mutant Complexed To Adenine
pdb|1MUN|A Chain A, Catalytic Domain Of Muty From Escherichia Coli D138n
Mutant
Length = 225
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 11/137 (8%)
Query: 79 YTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTH 138
Y +A N+ K A+ T + G P + +E+ ALPG+G A +++L ++ +
Sbjct: 82 YYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLS-LGKHFPILNGN 140
Query: 139 VHRICNRL----GWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTP 194
V R+ R GW PG K+ + E + P R N ++ G ICT
Sbjct: 141 VKRVLARCYAVSGW---PGKKEVENKLWSLSEQVT---PAVGVERFNQAMMDLGAMICTR 194
Query: 195 LRPRCGMCTVSEYCPSA 211
+P+C +C + C +A
Sbjct: 195 SKPKCSLCPLQNGCIAA 211
>pdb|1KQJ|A Chain A, Crystal Structure Of A Mutant Of Muty Catalytic Domain
Length = 225
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 79 YTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTH 138
Y +A N+ K A+ T + G P + +E+ ALPG+G A +++L +D +
Sbjct: 82 YYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLS-LGKHFPILDGN 140
Query: 139 VHRICNRL----GWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTP 194
V R+ R GW PG K+ + E + P R N ++ G ICT
Sbjct: 141 VKRVLARCYAVSGW---PGKKEVENKLWSLSEQVT---PAVGVERFNQAMMDLGAMICTR 194
Query: 195 LRPRCGMCTVSEYCPSA 211
+P+ +C + C +A
Sbjct: 195 SKPKHSLCPLQNGCIAA 211
>pdb|3N5N|X Chain X, Crystal Structure Analysis Of The Catalytic Domain And
Interdomain Connector Of Human Muty Homologue
pdb|3N5N|Y Chain Y, Crystal Structure Analysis Of The Catalytic Domain And
Interdomain Connector Of Human Muty Homologue
Length = 287
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 17/159 (10%)
Query: 57 TAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLAL-PGIG 115
T + + A + L + +Y+R +++ A+ + + G +P + + L L PG+G
Sbjct: 80 TLQDLASASLEEVNQLWAGLGYYSRGR-RLQEGARKVVEELGGHMPRTAETLQQLLPGVG 138
Query: 116 PKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKE 175
A + ++ + G+ VD +V R+ R+ + + P T + Q W +
Sbjct: 139 RYTAGAIASIAFGQATGV-VDGNVARVLCRV--------RAIGADPSSTLVSQQLWGLAQ 189
Query: 176 EWVR------INPLLVGFGQTICTPLRPRCGMCTVSEYC 208
+ V N + G T+CTP RP C C V C
Sbjct: 190 QLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLC 228
>pdb|2I5W|A Chain A, Structure Of Hogg1 Crosslinked To Dna Sampling A Normal G
Adjacent To An Oxog
Length = 315
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 108 LLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREA 167
L LPG+G K+A+ + + Q + VD H+ I R + P T Q QT +
Sbjct: 232 LCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 290
Query: 168 LQR-----WLPKEEWVR 179
L W P W +
Sbjct: 291 LGNFFRSLWGPYAGWAQ 307
>pdb|3KTU|A Chain A, Structure Of Human 8-Oxoguanine Glycosylase 1 Bound To
Fluorninated Oxog-Containing Dna
Length = 317
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 108 LLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREA 167
L LPG+G K+A+ + + Q + VD H+ I R + P T Q QT +
Sbjct: 232 LCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 290
Query: 168 LQR-----WLPKEEWVR 179
L W P W +
Sbjct: 291 LGNFFRSLWGPYAGWAQ 307
>pdb|1YQK|A Chain A, Human 8-Oxoguanine Glycosylase Crosslinked With Guanine
Containing Dna
Length = 319
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 108 LLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREA 167
L LPG+G K+A+ + + Q + VD H+ I R + P T Q QT +
Sbjct: 232 LCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 290
Query: 168 LQR-----WLPKEEWVR 179
L W P W +
Sbjct: 291 LGNFFRSLWGPYAGWAQ 307
>pdb|2NOF|A Chain A, Structure Of Q315f Human 8-oxoguanine Glycosylase Proximal
Crosslink To 8-oxoguanine Dna
Length = 325
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 108 LLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQ-KTSSPEQTRE 166
L LPG+G K+A+ + + Q + VD H+ I R + P T Q K SP+ +E
Sbjct: 238 LCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 296
>pdb|1HU0|A Chain A, Crystal Structure Of An Hogg1-Dna Borohydride Trapped
Intermediate Complex
pdb|1LWV|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Aminoguanine
pdb|1LWW|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Bromoguanine
pdb|1LWY|A Chain A, Hogg1 Borohydride-Trapped Intermediate Without
8-Oxoguanine
Length = 324
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 108 LLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREA 167
L LPG+G K+A+ + + Q + VD H+ I R + P T Q QT +
Sbjct: 237 LCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 295
Query: 168 LQR-----WLPKEEWVR 179
L W P W +
Sbjct: 296 LGNFFRSLWGPYAGWAQ 312
>pdb|1FN7|A Chain A, Coupling Of Damage Recognition And Catalysis By A Human
Base-Excision Dna Repair Protein
Length = 317
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 108 LLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREA 167
L LPG+G K+A+ + + Q + VD H+ I R + P T Q QT +
Sbjct: 232 LCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 290
Query: 168 LQR-----WLPKEEWVR 179
L W P W +
Sbjct: 291 LGNFFRSLWGPYAGWAQ 307
>pdb|1KO9|A Chain A, Native Structure Of The Human 8-Oxoguanine Dna Glycosylase
Hogg1
Length = 345
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 108 LLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREA 167
L LPG+G K+A+ + + Q + VD H+ I R + P T Q QT +
Sbjct: 240 LCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 298
Query: 168 LQR-----WLPKEEWVR 179
L W P W +
Sbjct: 299 LGNFFRSLWGPYAGWAQ 315
>pdb|3IH7|A Chain A, Crystal Structure Of Catalytically Active Human
8-Oxoguanine Glycosylase Distally Crosslinked To
Guanine-Containing Dna
Length = 316
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 108 LLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREA 167
L LPG+G K+A+ + + Q + VD H+ I R + P T Q QT +
Sbjct: 231 LCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPCPQTNKE 289
Query: 168 LQR-----WLPKEEWVR 179
L W P W +
Sbjct: 290 LGNFFRSLWGPYAGWAQ 306
>pdb|2NOI|A Chain A, Structure Of G42a Human 8-Oxoguanine Glycosylase
Crosslinked To Undamaged G-Containing Dna
Length = 325
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 108 LLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREA 167
L LPG+G ++A+ + + Q + VD H+ I R + P T Q QT +
Sbjct: 238 LCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 296
Query: 168 LQR-----WLPKEEWVR 179
L W P W +
Sbjct: 297 LGNFFRSLWGPYAGWAQ 313
>pdb|2NOZ|A Chain A, Structure Of Q315f Human 8-Oxoguanine Glycosylase Distal
Crosslink To 8-Oxoguanine Dna
Length = 325
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 108 LLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREA 167
L LPG+G K+A+ + + Q + VD H+ I R + P T Q QT +
Sbjct: 238 LCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPCPQTNKE 296
Query: 168 LQR-----WLPKEEWV 178
L W P W
Sbjct: 297 LGNFFRSLWGPYAGWA 312
>pdb|1YQL|A Chain A, Catalytically Inactive Hogg1 Crosslinked With 7-Deaza-8-
Azaguanine Containing Dna
pdb|1YQM|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To 7-Deazaguanine Containing Dna
pdb|1YQR|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To Oxog Containing Dna
Length = 319
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 108 LLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREA 167
L LPG+G ++A+ + + Q + VD H+ I R + P T Q QT +
Sbjct: 232 LCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 290
Query: 168 LQR-----WLPKEEWVR 179
L W P W +
Sbjct: 291 LGNFFRSLWGPYAGWAQ 307
>pdb|2NOE|A Chain A, Structure Of Catalytically Inactive G42a Human
8-Oxoguanine Glycosylase Complexed To 8-Oxoguanine Dna
Length = 325
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 108 LLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREA 167
L LPG+G ++A+ + + Q + VD H+ I R + P T Q QT +
Sbjct: 238 LCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 296
Query: 168 LQR-----WLPKEEWVR 179
L W P W +
Sbjct: 297 LGNFFRSLWGPYAGWAQ 313
>pdb|1EBM|A Chain A, Crystal Structure Of The Human 8-Oxoguanine Glycosylase
(Hogg1) Bound To A Substrate Oligonucleotide
Length = 317
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 108 LLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREA 167
L LPG+G ++A+ + + Q + VD H+ I R + P T Q QT +
Sbjct: 232 LCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 290
Query: 168 LQR-----WLPKEEWVR 179
L W P W +
Sbjct: 291 LGNFFRSLWGPYAGWAQ 307
>pdb|2NOH|A Chain A, Structure Of Catalytically Inactive Q315a Human 8-
Oxoguanine Glycosylase Complexed To 8-oxoguanine Dna
Length = 325
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 108 LLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQ-KTSSPEQTRE 166
L LPG+G ++A+ + + Q + VD H+ I R + P T Q K SP+ +E
Sbjct: 238 LCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 296
>pdb|3LDA|A Chain A, Yeast Rad51 H352y Filament Interface Mutant
Length = 400
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 24/99 (24%)
Query: 47 LQRLLQNGLHTAEAIDKA---DEATIKDL--------------IYPVAFYTRKACNMKKI 89
+++L ++GLHTAEA+ A D IK + + P+ F T +M++
Sbjct: 96 VKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVPMGFVTAADFHMRRS 155
Query: 90 AKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWF 128
ICLT +LD LL G G + ++ G F
Sbjct: 156 ELICLTTG----SKNLDTLL---GGGVETGSITELFGEF 187
>pdb|2DUY|A Chain A, Crystal Structure Of Competence Protein Comea-related
Protein From Thermus Thermophilus Hb8
Length = 75
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 103 SSLDELLALPGIGPKMANMVM 123
+SL+EL ALPGIGP +A ++
Sbjct: 24 ASLEELXALPGIGPVLARRIV 44
>pdb|1SZP|A Chain A, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|B Chain B, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|C Chain C, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|D Chain D, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|E Chain E, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|F Chain F, A Crystal Structure Of The Rad51 Filament
Length = 321
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 24/99 (24%)
Query: 47 LQRLLQNGLHTAEAIDKA---DEATIKDL--------------IYPVAFYTRKACNMKKI 89
+++L ++GLHTAEA+ A D IK + + P+ F T +M++
Sbjct: 17 VKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVPMGFVTAADFHMRRS 76
Query: 90 AKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWF 128
ICLT +LD LL G G + ++ G F
Sbjct: 77 ELICLTTG----SKNLDTLL---GGGVETGSITELFGEF 108
>pdb|2NOL|A Chain A, Structure Of Catalytically Inactive Human 8-Oxoguanine
Glycosylase Distal Crosslink To Oxog Dna
Length = 325
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 108 LLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREA 167
L LPG+G ++A+ + + Q + VD H+ I R + P T Q QT +
Sbjct: 238 LCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPCPQTNKE 296
Query: 168 LQR-----WLPKEEWVR 179
L W P W +
Sbjct: 297 LGNFFRSLWGPYAGWAQ 313
>pdb|1MPG|A Chain A, 3-Methyladenine Dna Glycosylase Ii From Escherichia Coli
pdb|1MPG|B Chain B, 3-Methyladenine Dna Glycosylase Ii From Escherichia Coli
pdb|1DIZ|A Chain A, Crystal Structure Of E. Coli 3-Methyladenine Dna
Glycosylase (Alka) Complexed With Dna
pdb|1DIZ|B Chain B, Crystal Structure Of E. Coli 3-Methyladenine Dna
Glycosylase (Alka) Complexed With Dna
pdb|1PVS|A Chain A, 3-Methyladenine Glcosylase Ii(Alka) Hypoxanthine Complex
pdb|1PVS|B Chain B, 3-Methyladenine Glcosylase Ii(Alka) Hypoxanthine Complex
pdb|3CVS|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:adenine Base Pair
pdb|3CVS|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:adenine Base Pair
pdb|3CVS|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:adenine Base Pair
pdb|3CVS|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:adenine Base Pair
pdb|3CVT|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CVT|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CVT|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CVT|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CW7|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CW7|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CW7|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CW7|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CWA|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CWA|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CWA|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CWA|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CWS|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:thymine Base Pair
pdb|3CWS|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:thymine Base Pair
pdb|3CWS|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:thymine Base Pair
pdb|3CWS|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:thymine Base Pair
pdb|3CWT|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:adenine Base Pair
pdb|3CWT|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:adenine Base Pair
pdb|3CWT|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:adenine Base Pair
pdb|3CWT|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:adenine Base Pair
pdb|3CWU|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxy-1,N6-Ethenoadenine:thymine Base Pair
pdb|3CWU|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxy-1,N6-Ethenoadenine:thymine Base Pair
pdb|3CWU|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxy-1,N6-Ethenoadenine:thymine Base Pair
pdb|3CWU|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxy-1,N6-Ethenoadenine:thymine Base Pair
pdb|3D4V|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX
N7methylguanine:cytosine Base Pair
pdb|3D4V|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX
N7methylguanine:cytosine Base Pair
pdb|3D4V|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX
N7methylguanine:cytosine Base Pair
pdb|3D4V|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX
N7methylguanine:cytosine Base Pair
Length = 282
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 21/130 (16%)
Query: 57 TAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICL-----TKYDGDIPSSLDELLAL 111
T + + AD +K L P+ ++A + +A L GD+ ++ L
Sbjct: 157 TPQRLAAADPQALKALGMPL----KRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTF 212
Query: 112 PGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRW 171
PGIG AN GW D ++ I R PG +P Q R +RW
Sbjct: 213 PGIGRWTANYFALRGWQAKDVFLPDDYL--IKQRF-----PGM-----TPAQIRRYAERW 260
Query: 172 LPKEEWVRIN 181
P + ++
Sbjct: 261 KPWRSYALLH 270
>pdb|3OGD|A Chain A, Alka Undamaged Dna Complex: Interrogation Of A G:c Base
Pair
Length = 289
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 12/83 (14%)
Query: 99 GDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKT 158
GD+ ++ L PGIG AN GW D ++ I R PG
Sbjct: 207 GDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYL--IKQRF-----PGM---- 255
Query: 159 SSPEQTREALQRWLPKEEWVRIN 181
+P Q R +RW P + ++
Sbjct: 256 -TPAQIRRYAERWKPWRSYALLH 277
>pdb|3A4Y|A Chain A, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3A4Y|B Chain B, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3A4Y|C Chain C, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3A4Y|D Chain D, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 160 SPEQTREALQRWLPKE--EWVRINPLLVGFGQTICTP 194
PE EAL P E EW+R+ L + FGQ P
Sbjct: 107 GPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLP 143
>pdb|3IE1|A Chain A, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
pdb|3IE1|B Chain B, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
pdb|3IE1|C Chain C, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
pdb|3IE1|D Chain D, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
Length = 431
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 160 SPEQTREALQRWLPKE--EWVRINPLLVGFGQTICTP 194
PE EAL P E EW+R+ L + FGQ P
Sbjct: 107 GPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLP 143
>pdb|3IEK|A Chain A, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEK|B Chain B, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEK|C Chain C, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEK|D Chain D, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEL|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEL|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEL|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEL|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEM|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
pdb|3IEM|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
pdb|3IEM|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
pdb|3IEM|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
Length = 431
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 160 SPEQTREALQRWLPKE--EWVRINPLLVGFGQTICTP 194
PE EAL P E EW+R+ L + FGQ P
Sbjct: 107 GPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLP 143
>pdb|3IE0|A Chain A, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE0|B Chain B, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE0|C Chain C, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE0|D Chain D, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 160 SPEQTREALQRWLPKE--EWVRINPLLVGFGQTICTP 194
PE EAL P E EW+R+ L + FGQ P
Sbjct: 107 GPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLP 143
>pdb|3IE2|A Chain A, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE2|B Chain B, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE2|C Chain C, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE2|D Chain D, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 160 SPEQTREALQRWLPKE--EWVRINPLLVGFGQTICTP 194
PE EAL P E EW+R+ L + FGQ P
Sbjct: 107 GPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLP 143
>pdb|3IDZ|A Chain A, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IDZ|B Chain B, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IDZ|C Chain C, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IDZ|D Chain D, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 160 SPEQTREALQRWLPKE--EWVRINPLLVGFGQTICTP 194
PE EAL P E EW+R+ L + FGQ P
Sbjct: 107 GPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLP 143
>pdb|2DKF|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
pdb|2DKF|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
pdb|2DKF|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
pdb|2DKF|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
Length = 431
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 160 SPEQTREALQRWLPKE--EWVRINPLLVGFGQTICTP 194
PE EAL P E EW+R+ L + FGQ P
Sbjct: 107 GPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLP 143
>pdb|3HLE|A Chain A, Simvastatin Synthase (Lovd), From Aspergillus Terreus, S5
Mutant, S76a Mutant, Complex With Monacolin J Acid
pdb|3HLF|A Chain A, Simvastatin Synthase (Lovd), From Aspergillus Terreus, S5
Mutant, S76a Mutant, Complex With Simvastatin
pdb|3HLG|A Chain A, Simvastatin Synthase (lovd), From Aspergillus Terreus, S5
Mutant, S76a Mutant, Complex With Lovastatin
Length = 432
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 172 LPKEEWVRINPLLVGFGQTICTPLRPRCGMCTVSEY 207
L E W R L G G I + P+ G+CT++ +
Sbjct: 369 LDGENWRRKGSLTFGGGPNIVWQIDPKAGLCTLAFF 404
>pdb|3HLC|A Chain A, Simvastatin Synthase (Lovd) From Aspergillus Terreus, S5
Mutant, Unliganded
pdb|3HLD|A Chain A, Simvastatin Synthase (Lovd), From Aspergillus Terreus, S5
Mutant Complex With Monacolin J Acid
Length = 432
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 172 LPKEEWVRINPLLVGFGQTICTPLRPRCGMCTVSEY 207
L E W R L G G I + P+ G+CT++ +
Sbjct: 369 LDGENWRRKGSLTFGGGPNIVWQIDPKAGLCTLAFF 404
>pdb|3HL9|A Chain A, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded
pdb|3HL9|B Chain B, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded
pdb|3HL9|C Chain C, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded
pdb|3HL9|D Chain D, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded
pdb|3HLB|A Chain A, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded, Selenomethionyl Derivative
pdb|3HLB|B Chain B, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded, Selenomethionyl Derivative
pdb|3HLB|C Chain C, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded, Selenomethionyl Derivative
pdb|3HLB|D Chain D, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded, Selenomethionyl Derivative
Length = 432
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 172 LPKEEWVRINPLLVGFGQTICTPLRPRCGMCTVSEY 207
L E W R L G G I + P+ G+CT++ +
Sbjct: 369 LDGENWRRKGSLTFGGGPNIVWQIDPKAGLCTLAFF 404
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target
Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-
Oxidoreductase (Dpre1) From Mycobacterium Smegmatis
pdb|4F4Q|A Chain A, Crystal Structure Of M. Smegmatis Dpre1 In Complex With
Fad And Covalently Bound Btz043
Length = 468
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 98 DGDIPSSLDELLALPGIGPKMANMVMTLGWFNV 130
DGD+ SLDE +A G + AN + WF+
Sbjct: 209 DGDVTGSLDETIAFHSDGSE-ANYTYSSAWFDA 240
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form
pdb|4G3U|A Chain A, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
pdb|4G3U|B Chain B, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
Length = 403
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 98 DGDIPSSLDELLALPGIGPKMANMVMTLGWFNV 130
DGD+ SLDE +A G + AN + WF+
Sbjct: 144 DGDVTGSLDETIAFHSDGSE-ANYTYSSAWFDA 175
>pdb|3VDP|A Chain A, Structure And Biochemical Studies Of The Recombination
Mediator Protein Recr In Recfor Pathway
pdb|3VDP|B Chain B, Structure And Biochemical Studies Of The Recombination
Mediator Protein Recr In Recfor Pathway
pdb|3VDP|C Chain C, Structure And Biochemical Studies Of The Recombination
Mediator Protein Recr In Recfor Pathway
pdb|3VDP|D Chain D, Structure And Biochemical Studies Of The Recombination
Mediator Protein Recr In Recfor Pathway
Length = 212
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 94 LTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQ 131
++ Y + ++EL LPGIGPK A L +F +
Sbjct: 14 MSYYSTSVAKLIEELSKLPGIGPKTAQ---RLAFFIIN 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,327,421
Number of Sequences: 62578
Number of extensions: 231376
Number of successful extensions: 540
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 52
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)