RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 026681
(235 letters)
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII)
{Helicobacter pylori [TaxId: 210]}
Length = 217
Score = 107 bits (267), Expect = 3e-29
Identities = 30/200 (15%), Positives = 72/200 (36%), Gaps = 35/200 (17%)
Query: 21 PKERRFAVLLSALLSSLTKDKVADGALQRLLQNGLH------TAEAIDKADEATIKDLIY 74
P +F LL A+L+ TK + +L+ L + + I + + + + +
Sbjct: 25 PNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVR 84
Query: 75 PVAFYTRKACNMKKIAKICLTKYD----GDIPSSLDELLALPGIGPKMANMVMTLGWFNV 130
P FY +KA + ++ L + + + LL GIG + A+ ++
Sbjct: 85 PSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAIL-CYACAK 143
Query: 131 QGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPK---------------- 174
+ + VD + + +LG + ++ + ++ + +
Sbjct: 144 EVMVVDKYSYLFLKKLGIEIE--------DYDELQHFFEKGVQENLNSALALYENTISLA 195
Query: 175 EEWVRINPLLVGFGQTICTP 194
+ + R + +V F +
Sbjct: 196 QLYARFHGKIVEFSKQKLEL 215
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId:
562]}
Length = 214
Score = 96.9 bits (240), Expect = 2e-25
Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 8/188 (4%)
Query: 26 FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACN 85
F +L++ +LS+ D + + +RL + T ++ I + Y KA N
Sbjct: 31 FELLIAVVLSAQCTDALVNKVTKRLFEKY-RTPHDYIAVPLEELEQDIRSIGLYRNKARN 89
Query: 86 MKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNR 145
++K+ + + KY+G++P DEL+ LPG+G K AN+V+++ + I VDTHV R+ R
Sbjct: 90 IQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGV-PAIAVDTHVERVSKR 148
Query: 146 LGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCGMCTVS 205
LG+ + S + + L + +PKEEW + ++ FG+ C P+C C +
Sbjct: 149 LGF------CRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLL 202
Query: 206 EYCPSAFK 213
C K
Sbjct: 203 HLCREGKK 210
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId:
562]}
Length = 211
Score = 90.4 bits (223), Expect = 5e-23
Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 9/188 (4%)
Query: 26 FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACN 85
F +L++ LLS+ D + A +L +T A+ + +K I + Y KA N
Sbjct: 30 FELLIAVLLSAQATDVSVNKATAKLYPVA-NTPAAMLELGVEGVKTYIKTIGLYNSKAEN 88
Query: 86 MKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNR 145
+ K +I L +++G++P L ALPG+G K AN+V+ + I VDTH+ R+CNR
Sbjct: 89 IIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGW-PTIAVDTHIFRVCNR 147
Query: 146 LGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCGMCTVS 205
+ + EQ E L + +P E V + L+ G+ C +PRCG C +
Sbjct: 148 TQFA-------PGKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIE 200
Query: 206 EYCPSAFK 213
+ C K
Sbjct: 201 DLCEYKEK 208
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 87.4 bits (215), Expect = 1e-21
Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 8/209 (3%)
Query: 18 SLPPKERR--FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYP 75
+LP + + + V LS ++ T+ +R + T + A + L
Sbjct: 21 TLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARF-PTVTDLANAPLDEVLHLWTG 79
Query: 76 VAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICV 135
+ +Y R N+ K A+ T + G P + +E+ ALPG+G A +++L I +
Sbjct: 80 LGYYARA-RNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPI-L 137
Query: 136 DTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPL 195
D +V R+ R V+ K++ + ++ P R N ++ G ICT
Sbjct: 138 DGNVKRVLARCYAVSGWPGKKEV--ENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRS 195
Query: 196 RPRCGMCTVSEYCPSAFKESSTSSSKSKK 224
+P+C +C + C A +S + KK
Sbjct: 196 KPKCSLCPLQNGCI-AAANNSWALYPGKK 223
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon
Methanobacterium thermoformicicum [TaxId: 145262]}
Length = 217
Score = 86.6 bits (213), Expect = 2e-21
Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 7/195 (3%)
Query: 18 SLPPKERR--FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYP 75
P + R + +L++ +L T + E I K ++ I I
Sbjct: 24 DFPWRHTRDPYVILITEILLRRTTAGHVKKIYDKFFVKY-KCFEDILKTPKSEIAKDIKE 82
Query: 76 VAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICV 135
+ ++A +K++A++ + Y G +P + +L LPG+G VM L + + V
Sbjct: 83 IGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAF-GKKAAMV 141
Query: 136 DTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPL 195
D + R+ NR + + + E + +P + N L+ F IC P
Sbjct: 142 DANFVRVINRYFGGSYENLNY---NHKALWELAETLVPGGKCRDFNLGLMDFSAIICAPR 198
Query: 196 RPRCGMCTVSEYCPS 210
+P+C C +S+ C
Sbjct: 199 KPKCEKCGMSKLCSY 213
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 221
Score = 85.4 bits (210), Expect = 6e-21
Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 7/195 (3%)
Query: 18 SLPPKERR--FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYP 75
LP ++ R + V +S ++ T+ + ++ + D ++ +K
Sbjct: 19 DLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGL 78
Query: 76 VAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICV 135
+ + + K T+Y G +P DE L G+GP V+ + V V
Sbjct: 79 GYYSRVRNLHAAV--KEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVL-SLAYGVPEPAV 135
Query: 136 DTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPL 195
+ +V R+ +RL VT K S+ ++ + ++ + E N L+ G +CTP
Sbjct: 136 NGNVMRVLSRLFLVTDD--IAKCSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPR 193
Query: 196 RPRCGMCTVSEYCPS 210
RP C +C V YC +
Sbjct: 194 RPSCLLCPVQAYCQA 208
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 190
Score = 82.5 bits (203), Expect = 3e-20
Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 34/190 (17%)
Query: 26 FAVLLSALLSSLTKDKVADGALQRLLQ--------------NGLHTAEAIDKADEATIKD 71
L S + SS G ++RL Q +G + +A+ +
Sbjct: 3 IECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLR 62
Query: 72 LIYPVAFYTRKACNMKKIAKICLTKY----------DGDIPSSLDELLALPGIGPKMANM 121
+ +A + A+ L + + + L LPG+G ++A+
Sbjct: 63 KLG----LGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTQVADC 118
Query: 122 VMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRIN 181
+ + Q + VD H+ I R ++ K SP+ +E + + W
Sbjct: 119 ICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFF--RSLWGP-- 174
Query: 182 PLLVGFGQTI 191
G+ +
Sbjct: 175 --YAGWAAAV 182
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain
of the methyl-GpG binding protein mbd4 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 144
Score = 57.4 bits (138), Expect = 3e-11
Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 9/122 (7%)
Query: 26 FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACN 85
+ +L++ + + T K+A L L+ E AD + +L+ P+ Y +A
Sbjct: 21 WKLLIATIFLNRTSGKMAIPVLWEFLEKYPSA-EVARAADWRDVSELLKPLGLYDLRAKT 79
Query: 86 MKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICV-DTHVHRICN 144
+ K + LTK + L GIG + + + D +++ +
Sbjct: 80 IIKFSDEYLTKQ-------WRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHD 132
Query: 145 RL 146
L
Sbjct: 133 WL 134
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8
kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 30.1 bits (68), Expect = 0.056
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 82 KACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMAN 120
K +K A + + KY I S E LPG+G K+A
Sbjct: 26 KYNAYRKAASV-IAKYPHKI-KSGAEAKKLPGVGTKIAE 62
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 29.2 bits (66), Expect = 0.065
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 100 DIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVD----THVHRIC 143
D SS++ L + GIGP A + G ++ + + H RI
Sbjct: 1 DTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIG 48
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo
sapiens) [TaxId: 9606]}
Length = 76
Score = 29.0 bits (65), Expect = 0.10
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 56 HTAEAIDK-ADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGI 114
H E ++ A +++ + Y KA N L + + +S E ++PGI
Sbjct: 4 HITEKLEVLAKAYSVQGDKWRALGY-AKAIN-------ALKSFHKPV-TSYQEACSIPGI 54
Query: 115 GPKMANMV 122
G +MA +
Sbjct: 55 GKRMAEKI 62
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967
{Thermus thermophilus [TaxId: 274]}
Length = 65
Score = 28.5 bits (64), Expect = 0.11
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 104 SLDELLALPGIGPKMANMVM 123
SL+EL+ALPGIGP +A ++
Sbjct: 15 SLEELMALPGIGPVLARRIV 34
Score = 24.3 bits (53), Expect = 4.2
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 103 SSLDELLALPGIGPKM 118
+ +++LL + GIGP
Sbjct: 40 ARVEDLLKVKGIGPAT 55
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 61
Score = 27.3 bits (61), Expect = 0.28
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 104 SLDELLALPGIGPKMANMVMTLGWFNVQGI 133
S+++L PG+GP A + G+ ++ I
Sbjct: 2 SIEDL---PGVGPATAEKLREAGYDTLEAI 28
Score = 27.3 bits (61), Expect = 0.34
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 4/37 (10%)
Query: 87 KKIAKICLTKYDGDIPS----SLDELLALPGIGPKMA 119
A+ + + S EL + GI A
Sbjct: 11 PATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTA 47
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 27.9 bits (62), Expect = 0.38
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 104 SLDELLALPGIGPKMANMVM 123
S +L +L IGPK A +++
Sbjct: 31 SARDLRSLQRIGPKKAQLIV 50
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 90
Score = 26.2 bits (58), Expect = 1.3
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 104 SLDELLALPGIGPKMAN 120
S L + G+ +A
Sbjct: 33 SAALLARISGLNSTLAQ 49
Score = 24.7 bits (54), Expect = 4.6
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 103 SSLDELLALPGIGPKM 118
+ DEL + +G K
Sbjct: 62 RTRDELKKVSRLGEKT 77
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 60
Score = 25.5 bits (56), Expect = 1.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 108 LLALPGIGPKMANMVMTLGWFNVQGI 133
L LPG+GP A ++ G+ + I
Sbjct: 1 LTDLPGVGPSTAEKLVEAGYIDFMKI 26
Score = 24.7 bits (54), Expect = 2.7
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 104 SLDELLALPGIGPKMAN 120
++ EL + GI K A
Sbjct: 30 TVGELTDIEGISEKAAA 46
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus
radiodurans [TaxId: 1299]}
Length = 199
Score = 27.2 bits (60), Expect = 1.6
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 102 PSSLDELL----ALPGIGPKMA 119
P SL L+ LPGIGPK A
Sbjct: 4 PPSLVSLIRELSRLPGIGPKSA 25
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015
{Pyrococcus furiosus [TaxId: 2261]}
Length = 68
Score = 25.5 bits (56), Expect = 1.8
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 87 KKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMV 122
+++ K + + +S+ EL+ + GIG K+A +
Sbjct: 24 RRLLKHFGS-VERVFTASVAELMKVEGIGEKIAKEI 58
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 64
Score = 25.0 bits (55), Expect = 2.0
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 34 LSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAK 91
+ L + + +++L ++GLHTAEA+ A KDL+ KA + A
Sbjct: 3 IEKLQVNGITMADVKKLRESGLHTAEAVAY---APRKDLLEIKGISEAKADKLLNEAA 57
>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic
protein PsbU {Thermosynechococcus elongatus [TaxId:
146786]}
Length = 98
Score = 26.0 bits (57), Expect = 2.0
Identities = 5/37 (13%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 86 MKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMV 122
I + S ++++L +PG+ + ++
Sbjct: 37 PTLAKLIV---KNAPYES-VEDVLNIPGLTERQKQIL 69
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 25.0 bits (55), Expect = 2.2
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 33 LLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAK 91
+S L + + +++L + G HT EA+ A K+LI KA + A
Sbjct: 9 PISRLEQCGINANDVKKLEEAGFHTVEAVAY---APKKELINIKGISEAKADKILAEAA 64
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 60
Score = 24.6 bits (54), Expect = 2.8
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 104 SLDELLALPGIGPKMANMVMTLGWFNVQGICVD-----THVHRIC 143
S ++ G+G K A +G+ + I D T + +
Sbjct: 6 SFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQKAG 50
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3
{Thermus filiformis [TaxId: 276]}
Length = 181
Score = 26.0 bits (56), Expect = 3.1
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 85 NMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFN 129
+ + D + +SL+EL+ + +G A ++
Sbjct: 118 VLARNLARRFGTMDRLLEASLEELIEVEEVGELTARAILE--TLK 160
>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase
{Escherichia coli [TaxId: 562]}
Length = 77
Score = 24.7 bits (54), Expect = 3.4
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 102 PSSLDELLALPGIGPKMAN 120
P + E+L++ G+G +
Sbjct: 42 PITASEMLSVNGVGMRKLE 60
>d2oafa1 d.38.1.1 (A:1-143) Hypothetical protein Jann0674
{Jannaschia sp. ccs1 [TaxId: 290400]}
Length = 143
Score = 25.6 bits (55), Expect = 3.8
Identities = 6/62 (9%), Positives = 15/62 (24%), Gaps = 1/62 (1%)
Query: 112 PGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRW 171
+ F V G+ + + +P+ R ++
Sbjct: 82 LKCHTWPTRLGTKSITFRVDGVQDGVTCFVGAFTCVFTI-ADQFKSQPAPDHLRALIEPH 140
Query: 172 LP 173
+P
Sbjct: 141 IP 142
>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 154
Score = 25.8 bits (56), Expect = 4.0
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 86 MKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTL 125
MK ++ +T G I SL +A + K +++ L
Sbjct: 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL 40
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga
maritima [TaxId: 2336]}
Length = 180
Score = 25.9 bits (56), Expect = 4.0
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 111 LPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNR 145
G+GP + LG ++ + ++ +R
Sbjct: 15 AKGVGPNRKKKLKKLGIETLRDL-LEFFPRDYEDR 48
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent
helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 24.8 bits (54), Expect = 4.1
Identities = 2/16 (12%), Positives = 9/16 (56%)
Query: 102 PSSLDELLALPGIGPK 117
P++++ + + G+
Sbjct: 51 PTTVENVKRIDGVSEG 66
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 24.3 bits (53), Expect = 4.2
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 106 DELLALPGIGPKMANMVM 123
D LL +PG+ K +M
Sbjct: 3 DFLLKMPGVNAKNCRSLM 20
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 198
Score = 25.6 bits (56), Expect = 4.2
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 101 IPSSLDELLALPGIGPKMANMVMTLG 126
+ L EL+ + IG A + G
Sbjct: 139 VKEELLELVRIRHIGRVRARKLYNAG 164
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 24.2 bits (53), Expect = 4.2
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 103 SSLDELLALPGIGPKMANMVMTLGWFNVQGICVD---THVHRIC 143
L+ + G G K A M G+ +++ I T I
Sbjct: 5 PVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIG 48
>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease,
catalytic domain {Klebsiella aerogenes [TaxId: 28451]}
Length = 385
Score = 25.8 bits (57), Expect = 4.7
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 17/34 (50%)
Query: 135 VDTHVHRICNRLGWVTQPGTKQKTSSPEQTREAL 168
+DTH+H IC P+Q EAL
Sbjct: 2 IDTHIHWIC-----------------PQQAEEAL 18
>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease,
catalytic domain {Helicobacter pylori [TaxId: 210]}
Length = 389
Score = 25.8 bits (57), Expect = 5.0
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 17/34 (50%)
Query: 135 VDTHVHRICNRLGWVTQPGTKQKTSSPEQTREAL 168
+DTH+H I P+Q A
Sbjct: 2 IDTHIHFIS-----------------PQQIPTAF 18
>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease,
catalytic domain {Bacillus pasteurii [TaxId: 1474]}
Length = 390
Score = 25.8 bits (57), Expect = 5.7
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 17/34 (50%)
Query: 135 VDTHVHRICNRLGWVTQPGTKQKTSSPEQTREAL 168
+DTHVH I P+Q AL
Sbjct: 3 IDTHVHFIN-----------------PDQVDVAL 19
>d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 209
Score = 25.6 bits (55), Expect = 5.9
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 78 FYTRKACNMKKIAKICLTKYDGDIPSSLDELL--ALPGIGPKMANMVMTLGWFNV 130
+ + K + + + ++ L+EL +PGIG +A + LG +
Sbjct: 154 ILAKIIADKSKPNGLGVIRPT-EVQDFLNELDIDEIPGIGSVLARRLNELGIQKL 207
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum
pernix [TaxId: 56636]}
Length = 70
Score = 24.0 bits (52), Expect = 6.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 104 SLDELLALPGIGPKMANMV 122
S E+ + GIG K A +
Sbjct: 43 SKAEISKVEGIGEKRAEEI 61
Score = 24.0 bits (52), Expect = 6.5
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 104 SLDELLALPGIGPKMA 119
L L + PGIG + A
Sbjct: 11 QLYILQSFPGIGRRTA 26
>d1j2na_ a.165.1.1 (A:) Myosin phosphatase inhibitor 17kDa protein,
CPI-17 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 99
Score = 24.3 bits (53), Expect = 7.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 165 REALQRWLPKEEWV 178
R LQR L E+W+
Sbjct: 22 RRELQRRLDVEKWI 35
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle
domain {Mycobacterium leprae [TaxId: 1769]}
Length = 71
Score = 23.5 bits (51), Expect = 7.9
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 107 ELLALPGIGPKMA-NMVMTLGWFNVQGICVDTHVHRIC 143
LL++ G+GP++A + ++ D+ V +
Sbjct: 10 ALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLT 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.395
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 845,278
Number of extensions: 37736
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 46
Length of query: 235
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 152
Effective length of database: 1,268,006
Effective search space: 192736912
Effective search space used: 192736912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)