Query 026682
Match_columns 235
No_of_seqs 193 out of 834
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 11:14:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 100.0 9.3E-48 2E-52 321.9 10.8 209 1-231 40-249 (331)
2 TIGR00562 proto_IX_ox protopor 99.4 9.9E-13 2.1E-17 121.0 13.0 136 72-220 218-360 (462)
3 PLN02576 protoporphyrinogen ox 99.4 6.6E-12 1.4E-16 116.8 14.0 130 70-211 230-374 (496)
4 PRK11883 protoporphyrinogen ox 99.2 1.7E-10 3.7E-15 105.5 14.9 138 71-223 213-356 (451)
5 PRK12416 protoporphyrinogen ox 99.1 7.3E-10 1.6E-14 102.3 13.9 132 71-218 218-355 (463)
6 TIGR03467 HpnE squalene-associ 99.0 5.6E-09 1.2E-13 94.3 13.2 127 74-218 191-322 (419)
7 COG1232 HemY Protoporphyrinoge 98.9 8.5E-09 1.8E-13 94.5 11.5 125 71-210 207-335 (444)
8 COG1231 Monoamine oxidase [Ami 98.9 1.1E-08 2.4E-13 92.5 10.2 134 69-219 199-335 (450)
9 PLN02328 lysine-specific histo 98.9 3.3E-08 7.1E-13 96.5 14.0 99 69-182 427-528 (808)
10 PLN02529 lysine-specific histo 98.8 7.9E-08 1.7E-12 93.3 14.3 100 69-182 347-448 (738)
11 PLN02268 probable polyamine ox 98.8 1.1E-07 2.3E-12 87.2 14.5 115 73-199 195-311 (435)
12 PF01593 Amino_oxidase: Flavin 98.7 1.8E-07 4E-12 83.5 10.5 125 72-208 205-333 (450)
13 PLN03000 amine oxidase 98.6 5.6E-07 1.2E-11 88.3 13.3 122 69-205 371-499 (881)
14 PRK07233 hypothetical protein; 98.5 1.1E-06 2.3E-11 80.0 12.3 98 71-181 190-290 (434)
15 PLN02568 polyamine oxidase 98.5 1.1E-06 2.3E-11 83.1 10.7 100 70-181 233-340 (539)
16 PLN02976 amine oxidase 98.4 3.5E-06 7.7E-11 85.9 13.2 103 70-182 927-1038(1713)
17 PLN02676 polyamine oxidase 98.4 2.8E-06 6.1E-11 79.3 10.4 98 75-182 220-327 (487)
18 COG2907 Predicted NAD/FAD-bind 98.3 3.6E-06 7.9E-11 74.2 8.6 98 67-177 208-305 (447)
19 PRK07208 hypothetical protein; 98.1 1.9E-05 4.1E-10 73.3 10.6 95 75-180 214-316 (479)
20 TIGR02733 desat_CrtD C-3',4' d 98.1 7.1E-05 1.5E-09 69.8 13.4 97 72-179 225-331 (492)
21 KOG1276 Protoporphyrinogen oxi 98.1 1.9E-05 4.2E-10 71.3 8.8 132 68-211 238-382 (491)
22 PLN02612 phytoene desaturase 98.1 3.7E-05 8E-10 73.2 11.3 104 79-194 308-416 (567)
23 TIGR02731 phytoene_desat phyto 98.0 4.8E-05 1E-09 70.1 10.6 107 78-196 212-327 (453)
24 TIGR02732 zeta_caro_desat caro 97.9 4.1E-05 8.9E-10 71.3 8.3 93 78-181 222-322 (474)
25 TIGR02734 crtI_fam phytoene de 97.3 0.0027 5.9E-08 59.3 11.9 97 71-177 211-312 (502)
26 PLN02487 zeta-carotene desatur 97.1 0.0022 4.8E-08 61.1 9.0 101 72-181 287-398 (569)
27 TIGR02730 carot_isom carotene 96.7 0.0076 1.6E-07 56.3 8.6 100 70-179 220-324 (493)
28 KOG0685 Flavin-containing amin 96.6 0.011 2.4E-07 54.5 8.4 104 75-189 219-335 (498)
29 PF13738 Pyr_redox_3: Pyridine 96.2 0.0076 1.6E-07 48.9 4.9 56 72-130 78-133 (203)
30 PF07156 Prenylcys_lyase: Pren 96.1 0.018 4E-07 52.0 7.1 68 68-139 117-188 (368)
31 KOG0029 Amine oxidase [Seconda 95.8 0.043 9.3E-07 51.6 8.4 100 70-182 210-312 (501)
32 COG1233 Phytoene dehydrogenase 94.6 0.061 1.3E-06 50.4 5.5 59 70-130 215-276 (487)
33 PTZ00363 rab-GDP dissociation 93.8 0.19 4.2E-06 46.5 7.0 54 74-130 227-285 (443)
34 COG2081 Predicted flavoprotein 92.9 0.24 5.1E-06 45.0 5.8 61 75-138 107-170 (408)
35 PF01266 DAO: FAD dependent ox 92.8 0.19 4.1E-06 43.8 4.9 49 78-130 146-198 (358)
36 PF13454 NAD_binding_9: FAD-NA 92.5 0.35 7.5E-06 38.0 5.7 34 94-130 119-152 (156)
37 PLN02172 flavin-containing mon 91.6 0.3 6.4E-06 45.5 5.0 50 79-130 111-168 (461)
38 PF03486 HI0933_like: HI0933-l 90.9 0.46 9.9E-06 43.6 5.4 64 72-138 102-169 (409)
39 PRK13339 malate:quinone oxidor 90.9 0.66 1.4E-05 43.7 6.5 50 79-130 188-242 (497)
40 TIGR03197 MnmC_Cterm tRNA U-34 90.7 0.46 1E-05 42.7 5.2 49 79-130 135-185 (381)
41 TIGR03219 salicylate_mono sali 90.4 0.7 1.5E-05 42.0 6.2 49 80-131 106-155 (414)
42 PF00743 FMO-like: Flavin-bind 89.6 0.4 8.8E-06 45.5 4.0 63 68-130 76-145 (531)
43 COG0579 Predicted dehydrogenas 89.6 0.77 1.7E-05 42.4 5.6 66 78-147 156-222 (429)
44 PRK11728 hydroxyglutarate oxid 89.1 1.2 2.6E-05 40.2 6.6 48 79-130 149-199 (393)
45 TIGR02352 thiamin_ThiO glycine 89.0 1.8 3.9E-05 37.6 7.5 48 79-130 137-188 (337)
46 PRK07236 hypothetical protein; 88.7 1.2 2.5E-05 40.1 6.3 52 77-131 98-150 (386)
47 TIGR03862 flavo_PP4765 unchara 86.6 2.1 4.5E-05 38.9 6.4 59 77-139 84-145 (376)
48 PRK09126 hypothetical protein; 86.3 2 4.4E-05 38.5 6.3 48 81-131 116-163 (392)
49 PRK05732 2-octaprenyl-6-methox 85.9 2.3 4.9E-05 38.1 6.4 48 81-131 118-165 (395)
50 TIGR01984 UbiH 2-polyprenyl-6- 85.6 2.1 4.6E-05 38.1 6.1 49 79-130 105-157 (382)
51 PRK05714 2-octaprenyl-3-methyl 85.6 2.3 4.9E-05 38.4 6.3 48 80-131 117-164 (405)
52 PRK06847 hypothetical protein; 85.3 4 8.6E-05 36.2 7.7 40 89-131 120-159 (375)
53 TIGR03329 Phn_aa_oxid putative 84.9 2 4.3E-05 39.8 5.6 48 79-132 187-234 (460)
54 PRK01747 mnmC bifunctional tRN 84.9 1.6 3.5E-05 42.4 5.3 49 79-130 408-458 (662)
55 PRK11259 solA N-methyltryptoph 84.5 2.1 4.6E-05 38.0 5.5 38 89-130 162-199 (376)
56 PRK06753 hypothetical protein; 84.5 2.9 6.3E-05 37.1 6.4 50 79-131 98-148 (373)
57 PRK08849 2-octaprenyl-3-methyl 83.7 2.8 6.1E-05 37.6 6.0 47 82-131 117-163 (384)
58 PRK07588 hypothetical protein; 83.5 2.6 5.6E-05 37.8 5.7 39 90-131 116-154 (391)
59 TIGR01377 soxA_mon sarcosine o 83.2 2.8 6.1E-05 37.2 5.8 39 88-130 157-195 (380)
60 PTZ00383 malate:quinone oxidor 82.8 2.8 6.1E-05 39.5 5.7 37 91-130 232-268 (497)
61 PRK08020 ubiF 2-octaprenyl-3-m 82.5 3.7 8E-05 36.8 6.3 49 80-131 117-165 (391)
62 PF00070 Pyr_redox: Pyridine n 81.9 2.3 4.9E-05 29.2 3.7 39 78-118 42-80 (80)
63 PRK09897 hypothetical protein; 81.5 3.2 6.9E-05 39.5 5.6 39 91-131 124-162 (534)
64 PRK08850 2-octaprenyl-6-methox 81.4 4.1 8.9E-05 36.8 6.2 48 81-131 117-164 (405)
65 PRK07333 2-octaprenyl-6-methox 81.2 4.4 9.4E-05 36.4 6.2 40 89-131 124-163 (403)
66 PF06039 Mqo: Malate:quinone o 79.9 3.9 8.3E-05 38.2 5.4 49 81-130 187-239 (488)
67 PRK04965 NADH:flavorubredoxin 79.9 5.5 0.00012 35.7 6.4 52 87-141 194-245 (377)
68 TIGR01292 TRX_reduct thioredox 79.8 4.3 9.3E-05 34.5 5.5 40 88-131 69-108 (300)
69 PRK00711 D-amino acid dehydrog 79.5 4.7 0.0001 36.4 5.9 47 80-130 202-252 (416)
70 TIGR03378 glycerol3P_GlpB glyc 79.5 7.2 0.00016 36.0 7.0 74 79-174 267-342 (419)
71 PRK08013 oxidoreductase; Provi 79.2 5.3 0.00012 36.1 6.1 48 81-131 117-164 (400)
72 TIGR01988 Ubi-OHases Ubiquinon 79.0 5.5 0.00012 35.3 6.1 50 79-131 106-159 (385)
73 TIGR03364 HpnW_proposed FAD de 78.8 4.5 9.7E-05 35.8 5.5 44 79-130 149-192 (365)
74 PRK08773 2-octaprenyl-3-methyl 78.8 5.8 0.00013 35.6 6.2 40 89-131 126-165 (392)
75 PRK07494 2-octaprenyl-6-methox 78.4 5.2 0.00011 35.8 5.8 49 79-131 115-163 (388)
76 PRK07190 hypothetical protein; 78.1 44 0.00095 31.3 12.0 41 88-131 121-161 (487)
77 TIGR01320 mal_quin_oxido malat 78.0 6.9 0.00015 36.7 6.6 51 79-130 178-235 (483)
78 PRK07364 2-octaprenyl-6-methox 77.8 5.9 0.00013 35.7 6.0 50 80-131 122-177 (415)
79 PRK08163 salicylate hydroxylas 77.2 6.8 0.00015 35.1 6.2 39 90-131 124-162 (396)
80 PRK12409 D-amino acid dehydrog 77.1 5.8 0.00013 35.8 5.7 48 80-130 202-253 (410)
81 PRK05868 hypothetical protein; 77.0 7.5 0.00016 34.9 6.4 49 80-131 106-156 (372)
82 PF13450 NAD_binding_8: NAD(P) 77.0 2 4.4E-05 28.8 2.1 24 14-37 43-68 (68)
83 PRK06834 hypothetical protein; 75.6 7.7 0.00017 36.4 6.2 40 89-131 113-152 (488)
84 PRK06617 2-octaprenyl-6-methox 75.1 8.2 0.00018 34.5 6.1 49 79-131 104-156 (374)
85 PRK07045 putative monooxygenas 74.2 9.4 0.0002 34.2 6.3 45 84-131 115-161 (388)
86 TIGR00275 flavoprotein, HI0933 73.4 10 0.00022 34.5 6.3 52 76-131 102-156 (400)
87 COG2509 Uncharacterized FAD-de 73.2 8.7 0.00019 35.8 5.7 57 71-130 165-225 (486)
88 PRK06183 mhpA 3-(3-hydroxyphen 72.5 8.8 0.00019 36.3 5.9 49 81-131 119-170 (538)
89 PRK06475 salicylate hydroxylas 72.5 10 0.00022 34.2 6.1 49 81-131 113-163 (400)
90 PRK15317 alkyl hydroperoxide r 71.4 9.9 0.00021 35.8 5.9 41 88-131 278-318 (517)
91 PRK05257 malate:quinone oxidor 71.3 9.6 0.00021 35.9 5.8 49 80-130 184-241 (494)
92 PF13434 K_oxygenase: L-lysine 70.9 6.1 0.00013 35.3 4.2 53 78-130 97-154 (341)
93 PLN02927 antheraxanthin epoxid 70.5 12 0.00025 36.8 6.3 50 79-131 194-244 (668)
94 PRK06116 glutathione reductase 70.4 11 0.00024 34.6 5.9 41 88-131 220-261 (450)
95 TIGR03140 AhpF alkyl hydropero 70.3 11 0.00024 35.5 6.0 40 89-131 280-319 (515)
96 PRK06416 dihydrolipoamide dehy 68.9 9.1 0.0002 35.3 5.1 47 83-131 220-268 (462)
97 COG0654 UbiH 2-polyprenyl-6-me 68.3 17 0.00036 32.7 6.5 38 91-131 120-158 (387)
98 PLN02507 glutathione reductase 68.3 12 0.00026 35.2 5.7 41 87-130 255-295 (499)
99 TIGR02032 GG-red-SF geranylger 68.2 13 0.00028 31.3 5.5 54 75-130 90-143 (295)
100 PRK07845 flavoprotein disulfid 68.0 12 0.00026 34.7 5.7 46 83-131 225-270 (466)
101 PRK07608 ubiquinone biosynthes 66.4 17 0.00036 32.4 6.1 47 80-131 116-163 (388)
102 PRK06996 hypothetical protein; 65.4 17 0.00037 32.8 6.0 48 81-131 121-170 (398)
103 COG2072 TrkA Predicted flavopr 65.1 10 0.00022 35.1 4.6 48 91-138 99-147 (443)
104 PRK05249 soluble pyridine nucl 64.9 15 0.00033 33.8 5.7 52 81-136 222-273 (461)
105 PRK08010 pyridine nucleotide-d 64.8 15 0.00033 33.6 5.7 40 88-131 211-250 (441)
106 PRK06184 hypothetical protein; 64.7 17 0.00037 33.9 6.1 47 81-131 115-164 (502)
107 TIGR01424 gluta_reduc_2 glutat 64.1 17 0.00036 33.5 5.8 45 83-131 215-259 (446)
108 TIGR03385 CoA_CoA_reduc CoA-di 63.2 15 0.00032 33.4 5.3 46 83-130 51-98 (427)
109 TIGR01350 lipoamide_DH dihydro 62.7 17 0.00036 33.5 5.5 41 89-131 224-265 (461)
110 TIGR01989 COQ6 Ubiquinone bios 62.1 21 0.00045 32.7 6.0 51 80-131 122-179 (437)
111 TIGR02485 CobZ_N-term precorri 61.3 27 0.00059 31.9 6.6 56 76-133 120-181 (432)
112 PRK10157 putative oxidoreducta 60.7 20 0.00044 32.8 5.6 54 75-131 107-160 (428)
113 PRK14727 putative mercuric red 60.5 20 0.00044 33.3 5.7 40 88-131 240-279 (479)
114 PRK09754 phenylpropionate diox 60.3 21 0.00045 32.2 5.6 40 88-131 198-237 (396)
115 PRK14694 putative mercuric red 59.7 26 0.00056 32.5 6.2 47 86-136 228-274 (468)
116 PF13434 K_oxygenase: L-lysine 59.2 15 0.00032 32.9 4.3 38 91-130 294-336 (341)
117 PRK13512 coenzyme A disulfide 58.4 22 0.00048 32.6 5.5 46 83-130 65-112 (438)
118 PRK06185 hypothetical protein; 56.1 30 0.00064 31.1 5.9 49 81-131 114-165 (407)
119 PRK08132 FAD-dependent oxidore 56.1 29 0.00063 32.8 6.0 50 80-131 130-181 (547)
120 PRK06175 L-aspartate oxidase; 55.9 28 0.00061 32.0 5.7 52 79-133 132-187 (433)
121 PRK06126 hypothetical protein; 55.4 27 0.00058 33.0 5.7 40 90-131 141-184 (545)
122 PRK12266 glpD glycerol-3-phosp 55.4 1.4E+02 0.0031 28.0 10.5 41 88-130 167-211 (508)
123 KOG4254 Phytoene desaturase [C 55.1 11 0.00024 35.2 2.8 66 73-143 258-327 (561)
124 PRK07538 hypothetical protein; 54.3 33 0.00071 31.1 5.8 49 81-131 108-161 (413)
125 PRK06912 acoL dihydrolipoamide 53.8 30 0.00065 32.0 5.6 46 83-132 219-265 (458)
126 PRK08244 hypothetical protein; 53.5 28 0.0006 32.4 5.4 52 78-131 102-155 (493)
127 PRK07846 mycothione reductase; 53.2 34 0.00074 31.6 5.9 44 90-136 220-263 (451)
128 PRK07251 pyridine nucleotide-d 52.7 31 0.00068 31.5 5.5 47 80-130 202-248 (438)
129 TIGR01373 soxB sarcosine oxida 52.6 40 0.00087 30.3 6.1 39 89-130 196-235 (407)
130 TIGR02053 MerA mercuric reduct 52.0 31 0.00067 31.8 5.4 51 79-131 210-262 (463)
131 COG1249 Lpd Pyruvate/2-oxoglut 51.6 38 0.00082 31.6 5.8 46 82-130 221-267 (454)
132 TIGR02374 nitri_red_nirB nitri 51.5 39 0.00085 33.7 6.3 59 79-140 185-243 (785)
133 TIGR01421 gluta_reduc_1 glutat 51.5 38 0.00082 31.3 5.9 47 88-136 219-266 (450)
134 PRK07818 dihydrolipoamide dehy 51.2 34 0.00073 31.6 5.5 47 88-136 225-274 (466)
135 TIGR03452 mycothione_red mycot 51.0 49 0.0011 30.6 6.5 39 90-131 223-261 (452)
136 PRK09564 coenzyme A disulfide 50.9 25 0.00055 32.0 4.6 52 80-135 195-246 (444)
137 PRK13748 putative mercuric red 50.8 35 0.00076 32.3 5.7 44 88-135 322-365 (561)
138 TIGR02374 nitri_red_nirB nitri 50.8 25 0.00054 35.1 4.8 39 87-130 65-103 (785)
139 KOG1399 Flavin-containing mono 50.6 20 0.00044 33.3 3.9 56 73-130 87-148 (448)
140 PRK09564 coenzyme A disulfide 50.3 33 0.00071 31.3 5.2 40 89-130 69-110 (444)
141 TIGR01813 flavo_cyto_c flavocy 49.0 38 0.00083 30.9 5.5 51 80-132 131-189 (439)
142 PRK06370 mercuric reductase; V 48.3 41 0.00089 31.0 5.6 46 84-131 220-267 (463)
143 PRK04965 NADH:flavorubredoxin 47.1 33 0.00072 30.6 4.7 41 84-130 66-106 (377)
144 TIGR01790 carotene-cycl lycope 47.1 48 0.001 29.5 5.7 38 90-130 99-136 (388)
145 TIGR03169 Nterm_to_SelD pyridi 47.0 34 0.00074 30.2 4.7 46 78-130 193-238 (364)
146 PRK10015 oxidoreductase; Provi 46.6 45 0.00097 30.6 5.5 43 86-131 118-160 (429)
147 PTZ00052 thioredoxin reductase 46.2 49 0.0011 31.1 5.8 46 88-136 234-279 (499)
148 TIGR03169 Nterm_to_SelD pyridi 46.1 41 0.0009 29.7 5.1 41 84-130 62-102 (364)
149 PLN02463 lycopene beta cyclase 45.7 59 0.0013 30.2 6.2 39 89-131 127-165 (447)
150 PRK11445 putative oxidoreducta 45.5 40 0.00087 29.8 4.9 41 89-131 111-153 (351)
151 PF00732 GMC_oxred_N: GMC oxid 44.9 45 0.00098 28.4 5.0 51 90-143 207-263 (296)
152 PRK13369 glycerol-3-phosphate 43.6 52 0.0011 30.8 5.6 41 88-130 167-210 (502)
153 TIGR03385 CoA_CoA_reduc CoA-di 42.8 58 0.0013 29.6 5.6 43 83-130 186-228 (427)
154 PRK06327 dihydrolipoamide dehy 42.5 52 0.0011 30.6 5.3 41 89-131 237-280 (475)
155 PRK06134 putative FAD-binding 41.2 62 0.0014 31.0 5.8 45 88-134 229-277 (581)
156 PF04839 PSRP-3_Ycf65: Plastid 41.0 32 0.00069 21.7 2.5 23 22-44 5-27 (49)
157 PRK06481 fumarate reductase fl 40.6 64 0.0014 30.3 5.7 43 89-133 203-249 (506)
158 COG0665 DadA Glycine/D-amino a 39.9 67 0.0015 28.3 5.5 47 80-130 157-207 (387)
159 PRK12842 putative succinate de 38.9 69 0.0015 30.6 5.7 55 79-135 214-275 (574)
160 PRK14989 nitrite reductase sub 38.8 93 0.002 31.5 6.7 60 79-139 190-249 (847)
161 TIGR03377 glycerol3P_GlpA glyc 38.7 1.8E+02 0.0038 27.3 8.3 41 88-130 140-185 (516)
162 TIGR01438 TGR thioredoxin and 38.6 68 0.0015 30.0 5.5 50 86-137 230-281 (484)
163 TIGR01423 trypano_reduc trypan 38.3 81 0.0018 29.6 5.9 47 88-137 243-290 (486)
164 PTZ00318 NADH dehydrogenase-li 38.2 65 0.0014 29.4 5.2 41 83-130 235-275 (424)
165 PRK09754 phenylpropionate diox 37.4 60 0.0013 29.3 4.8 37 89-130 71-107 (396)
166 PF05678 VQ: VQ motif; InterP 36.9 30 0.00065 19.6 1.7 19 20-38 5-23 (31)
167 PRK05329 anaerobic glycerol-3- 36.9 87 0.0019 28.9 5.8 53 75-130 256-313 (422)
168 COG0644 FixC Dehydrogenases (f 36.7 78 0.0017 28.6 5.4 60 70-131 88-148 (396)
169 COG1252 Ndh NADH dehydrogenase 36.5 50 0.0011 30.4 4.1 49 76-130 209-257 (405)
170 TIGR00031 UDP-GALP_mutase UDP- 36.4 58 0.0012 29.6 4.4 49 75-130 194-242 (377)
171 PRK07512 L-aspartate oxidase; 36.2 51 0.0011 31.1 4.2 54 79-134 140-196 (513)
172 TIGR00551 nadB L-aspartate oxi 33.9 93 0.002 29.0 5.6 53 79-133 132-187 (488)
173 PF05834 Lycopene_cycl: Lycope 33.8 1.1E+02 0.0023 27.5 5.8 37 91-130 101-137 (374)
174 PRK10262 thioredoxin reductase 33.2 86 0.0019 27.2 5.0 37 89-130 76-112 (321)
175 PRK12845 3-ketosteroid-delta-1 33.0 94 0.002 29.8 5.5 55 79-135 217-278 (564)
176 PRK06115 dihydrolipoamide dehy 32.6 96 0.0021 28.7 5.4 42 88-131 227-272 (466)
177 PTZ00058 glutathione reductase 31.7 1.2E+02 0.0026 29.1 6.0 42 88-131 290-332 (561)
178 PRK14989 nitrite reductase sub 30.5 87 0.0019 31.7 5.0 38 88-130 71-108 (847)
179 PRK08243 4-hydroxybenzoate 3-m 28.6 1.6E+02 0.0034 26.4 6.0 42 89-131 116-159 (392)
180 PF00890 FAD_binding_2: FAD bi 28.4 87 0.0019 28.1 4.3 57 78-136 140-204 (417)
181 PF01494 FAD_binding_3: FAD bi 27.5 68 0.0015 27.5 3.3 41 89-131 124-168 (356)
182 PRK07121 hypothetical protein; 27.4 1.5E+02 0.0032 27.6 5.8 53 79-133 177-237 (492)
183 PRK08274 tricarballylate dehyd 27.1 1.6E+02 0.0034 27.1 5.8 56 76-133 128-190 (466)
184 PRK06467 dihydrolipoamide dehy 27.1 1.4E+02 0.003 27.7 5.5 39 91-131 229-270 (471)
185 PRK05976 dihydrolipoamide dehy 27.0 1.6E+02 0.0035 27.1 5.9 47 83-131 229-277 (472)
186 PRK12843 putative FAD-binding 26.9 1.3E+02 0.0027 28.9 5.3 42 89-133 234-280 (578)
187 PRK13512 coenzyme A disulfide 24.8 1.5E+02 0.0033 27.1 5.3 36 88-130 201-236 (438)
188 PRK12837 3-ketosteroid-delta-1 24.7 1.7E+02 0.0037 27.5 5.6 51 81-134 179-234 (513)
189 PRK13977 myosin-cross-reactive 24.5 1.6E+02 0.0034 28.6 5.3 49 81-130 232-288 (576)
190 TIGR01789 lycopene_cycl lycope 24.4 1.3E+02 0.0029 26.9 4.7 52 71-130 82-133 (370)
191 PRK09231 fumarate reductase fl 24.0 1.9E+02 0.0042 27.7 5.9 51 81-133 139-194 (582)
192 KOG3086 Predicted dioxygenase 23.9 71 0.0015 27.4 2.6 32 1-40 1-32 (296)
193 PRK07804 L-aspartate oxidase; 23.5 1.7E+02 0.0037 27.8 5.5 43 89-133 157-208 (541)
194 PRK06263 sdhA succinate dehydr 23.4 1.9E+02 0.0041 27.4 5.8 51 80-133 139-195 (543)
195 PRK11101 glpA sn-glycerol-3-ph 23.0 2.1E+02 0.0046 27.2 6.0 41 88-130 161-206 (546)
196 TIGR01810 betA choline dehydro 22.7 1.8E+02 0.004 27.4 5.5 55 89-145 207-265 (532)
197 PRK06292 dihydrolipoamide dehy 22.7 2.2E+02 0.0047 26.1 5.9 38 91-130 224-263 (460)
198 PRK06069 sdhA succinate dehydr 22.6 1.8E+02 0.0039 27.8 5.4 55 78-134 140-199 (577)
199 TIGR00136 gidA glucose-inhibit 22.5 6.3E+02 0.014 24.7 9.0 22 212-233 235-256 (617)
200 COG1251 NirB NAD(P)H-nitrite r 21.2 1.2E+02 0.0026 30.2 3.9 41 85-130 68-108 (793)
201 PLN02546 glutathione reductase 21.0 2.1E+02 0.0047 27.4 5.6 42 88-131 305-346 (558)
202 TIGR01812 sdhA_frdA_Gneg succi 20.4 2.3E+02 0.005 26.9 5.7 51 80-133 134-189 (566)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=100.00 E-value=9.3e-48 Score=321.90 Aligned_cols=209 Identities=25% Similarity=0.454 Sum_probs=179.8
Q ss_pred CcceecccCCCCceecccCCCceecCChHHHHHHHHHHhCCccccccccceeEeccCcceeecccCCCCceEEeCCCchH
Q 026682 1 MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNS 80 (235)
Q Consensus 1 maTRr~~~~~~~~~~fDhGAqyft~~~~~f~~~v~~~~~~g~v~~W~~~~~~~~~~~g~~~~~~~~~~~~~yvg~~GM~~ 80 (235)
|+|||. +.+ .||||||||+++++.|.++|+.|.++|+|++|.+.++.+.+.+.. +...+..|++.|||++
T Consensus 40 lAtRRl--~~g---~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~~~~~~~~~~~~-----~~~d~~pyvg~pgmsa 109 (331)
T COG3380 40 LATRRL--DGG---RFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTPAVWTFTGDGSP-----PRGDEDPYVGEPGMSA 109 (331)
T ss_pred hheecc--CCc---cccccceeecCCchHHHHHHHHHHhCCceeeccccccccccCCCC-----CCCCCCccccCcchHH
Confidence 799998 555 599999999999999999999999999999999988988753311 2222333999999999
Q ss_pred HHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccchhcccCCCCCCCCCcchHHHHH
Q 026682 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVK 160 (235)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~ll~~p~~~~~~~~~~l~~~ 160 (235)
|+|+|++++. |+++++|+.|.+ .++.|+|++++|..+..||.|||| +|+||++.||. +. +..+..++.+.
T Consensus 110 lak~LAtdL~--V~~~~rVt~v~~--~~~~W~l~~~~g~~~~~~d~vvla---~PAPQ~~~LLt-~~--~~~~p~~l~~~ 179 (331)
T COG3380 110 LAKFLATDLT--VVLETRVTEVAR--TDNDWTLHTDDGTRHTQFDDVVLA---IPAPQTATLLT-TD--ADDLPAALRAA 179 (331)
T ss_pred HHHHHhccch--hhhhhhhhhhee--cCCeeEEEecCCCcccccceEEEe---cCCCcchhhcC-cc--cccchHHHHHh
Confidence 9999999774 899999999998 788999999888777799999999 99999999994 21 22344578999
Q ss_pred hcCCCCcceEEEEEeccCCCCCCCccceEecCCCcEEEEEeCCCCCCCCCCCceEEEEcC-hhhhHHHhhhc
Q 026682 161 LEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANRLCKDCNCT-NWTSKAFRSNI 231 (235)
Q Consensus 161 l~~v~~~p~~~v~~~~~~~~~~~~~~g~~~~~~~~l~wi~~~ssKpgR~~~~~~wvl~a~-~~~~~~~~~~~ 231 (235)
+..|.|.|||++|++|++++. .|++|.++ ++++|+|+++|.+||||.+.++.||+|++ +||+.|++..-
T Consensus 180 ~a~V~y~Pc~s~~lg~~q~l~-~P~~G~~v-dg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~~~ 249 (331)
T COG3380 180 LADVVYAPCWSAVLGYPQPLD-RPWPGNFV-DGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDHPA 249 (331)
T ss_pred hccceehhHHHHHhcCCccCC-CCCCCccc-CCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcCCH
Confidence 999999999999999999986 68999666 55699999999999999998899999965 99999998643
No 2
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.45 E-value=9.9e-13 Score=121.03 Aligned_cols=136 Identities=13% Similarity=0.154 Sum_probs=105.7
Q ss_pred EEeCCCchHHHHHHhcCCC-CeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccchhcccCCCCCCC
Q 026682 72 YVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLD 150 (235)
Q Consensus 72 yvg~~GM~~l~~~La~~l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~ll~~p~~~~ 150 (235)
+...+||++|++.|++.++ .+|+++++|++|++ .+++|.|++++|+. ..||+||+| +|++++..++.
T Consensus 218 ~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~--~~~~~~v~~~~g~~-~~ad~VI~t---~P~~~~~~ll~------ 285 (462)
T TIGR00562 218 QTLATGLETLPEEIEKRLKLTKVYKGTKVTKLSH--RGSNYTLELDNGVT-VETDSVVVT---APHKAAAGLLS------ 285 (462)
T ss_pred EecchhHHHHHHHHHHHhccCeEEcCCeEEEEEe--cCCcEEEEECCCcE-EEcCEEEEC---CCHHHHHHHhc------
Confidence 4568999999999999886 68999999999997 77889998888854 378999999 99999999874
Q ss_pred CCcchHHHHHhcCCCCcceEEEEEeccCCCCCCCccc--eEecCC---CcEEEEEeCCCCCCCCCCCc-eEEEEcC
Q 026682 151 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKG--FSFQDS---EVLSWAHCDSSKPGRSANRL-CKDCNCT 220 (235)
Q Consensus 151 ~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~~~~~~~g--~~~~~~---~~l~wi~~~ssKpgR~~~~~-~wvl~a~ 220 (235)
++.++..+.+.+++|.||+++++.|+++....+..+ ++++.+ .+++|+++++.+|++.+.+. .++++.+
T Consensus 286 -~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~ 360 (462)
T TIGR00562 286 -ELSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIG 360 (462)
T ss_pred -ccCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeC
Confidence 345677888999999999999999988632223344 444433 46899987777798876332 4555543
No 3
>PLN02576 protoporphyrinogen oxidase
Probab=99.38 E-value=6.6e-12 Score=116.75 Aligned_cols=130 Identities=18% Similarity=0.165 Sum_probs=101.6
Q ss_pred ceEEeCCCchHHHHHHhcCCC-CeeEcCeeEEEEEeecCCCC-eEEEeC--CCcccccccEEEecCCCCCccchhcccCC
Q 026682 70 KKYVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNL-WSVSGL--DGQSLGQFNGVVASDKNVVSPRFRDVTGR 145 (235)
Q Consensus 70 ~~yvg~~GM~~l~~~La~~l~-~~i~~~~~V~~i~~~~~~~~-w~l~~~--~G~~~~~~d~VVlA~~~~pap~~~~ll~~ 145 (235)
..|...+||++|+++|++.++ .+|+++++|++|++ .+++ |.|+.. +|+....||+||+| +|++++..++.
T Consensus 230 ~~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~--~~~~~~~v~~~~~~g~~~~~ad~VI~a---~P~~~l~~ll~- 303 (496)
T PLN02576 230 TVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSK--NDDGGYSLTYDTPEGKVNVTAKAVVMT---APLYVVSEMLR- 303 (496)
T ss_pred eeEeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEE--CCCCcEEEEEecCCCceeEEeCEEEEC---CCHHHHHHHhc-
Confidence 357779999999999999886 67999999999997 5665 988654 44323579999999 99999999985
Q ss_pred CCCCCCCcchHHHHHhcCCCCcceEEEEEeccCCCCCC------CccceE--ecCC---CcEEEEEeCCCCCCCCCC
Q 026682 146 PPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI------PVKGFS--FQDS---EVLSWAHCDSSKPGRSAN 211 (235)
Q Consensus 146 p~~~~~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~~~~------~~~g~~--~~~~---~~l~wi~~~ssKpgR~~~ 211 (235)
...++..+.+++++|.||++|++.|+++.+.. +..|+. ++.. ..++|++.++.+|+|.++
T Consensus 304 ------~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~ 374 (496)
T PLN02576 304 ------PKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPE 374 (496)
T ss_pred ------ccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCC
Confidence 34567888999999999999999999864322 344544 3221 357899888888998763
No 4
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.25 E-value=1.7e-10 Score=105.53 Aligned_cols=138 Identities=16% Similarity=0.122 Sum_probs=104.2
Q ss_pred eEEeCCCchHHHHHHhcCCCC-eeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccchhcccCCCCCC
Q 026682 71 KYVGVPGMNSICKALCHQPGV-ESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPL 149 (235)
Q Consensus 71 ~yvg~~GM~~l~~~La~~l~~-~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~ll~~p~~~ 149 (235)
.+...+||++|+++|++.+.. +|+++++|++|+. .+++|.|.+++|+. ..||.||+| +|.+++..++. +
T Consensus 213 ~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~--~~~~~~v~~~~g~~-~~~d~vI~a---~p~~~~~~l~~-~--- 282 (451)
T PRK11883 213 FGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDK--SGDGYEIVLSNGGE-IEADAVIVA---VPHPVLPSLFV-A--- 282 (451)
T ss_pred eEeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEE--cCCeEEEEECCCCE-EEcCEEEEC---CCHHHHHHhcc-C---
Confidence 456799999999999998865 7999999999997 67789998888865 479999999 99999988864 1
Q ss_pred CCCcchHHHHHhcCCCCcceEEEEEeccCCC-CCCCccceEecC--CCcEEEEEeCCCC-CCCCCCCceEEEEcC-hhh
Q 026682 150 DLTFAPDLAVKLEEIPVNPCFALMLAFSEPL-SSIPVKGFSFQD--SEVLSWAHCDSSK-PGRSANRLCKDCNCT-NWT 223 (235)
Q Consensus 150 ~~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~-~~~~~~g~~~~~--~~~l~wi~~~ssK-pgR~~~~~~wvl~a~-~~~ 223 (235)
+.+.+.++.++|.++.++++.|+++. ...+..|+++.. +.++.++..++.+ |++.+.+...+.+.. .|+
T Consensus 283 -----~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~ 356 (451)
T PRK11883 283 -----PPAFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPG 356 (451)
T ss_pred -----hhHHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCC
Confidence 34567788999999999999999874 223345666552 2356777777777 666554445555543 444
No 5
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.15 E-value=7.3e-10 Score=102.30 Aligned_cols=132 Identities=15% Similarity=0.070 Sum_probs=96.8
Q ss_pred eEEeCCCchHHHHHHhcCCC-CeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccchhcccCCCCCC
Q 026682 71 KYVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPL 149 (235)
Q Consensus 71 ~yvg~~GM~~l~~~La~~l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~ll~~p~~~ 149 (235)
.+...+||++|+++|++.+. .+|+++++|++|++ .+++|.|.+.+|+. ..||+||+| +|++++..|+.
T Consensus 218 ~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~--~~~~~~v~~~~g~~-~~ad~VI~a---~p~~~~~~ll~----- 286 (463)
T PRK12416 218 FVSFKGGLSTIIDRLEEVLTETVVKKGAVTTAVSK--QGDRYEISFANHES-IQADYVVLA---APHDIAETLLQ----- 286 (463)
T ss_pred eEeeCCCHHHHHHHHHHhcccccEEcCCEEEEEEE--cCCEEEEEECCCCE-EEeCEEEEC---CCHHHHHhhcC-----
Confidence 34568999999999999875 47999999999997 67789998877764 368999999 99998888874
Q ss_pred CCCcchHHHHHhcCCCCcceEEEEEeccCCCCCCC--ccceEecCCCcE--EEEEeCCCC-CCCCCCCceEEEE
Q 026682 150 DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP--VKGFSFQDSEVL--SWAHCDSSK-PGRSANRLCKDCN 218 (235)
Q Consensus 150 ~~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~~~~~--~~g~~~~~~~~l--~wi~~~ssK-pgR~~~~~~wvl~ 218 (235)
.+++...+.++.|.+|.++++.|+++....+ ..|+++++++.+ .-+.++|+| |++.+ ...+++.
T Consensus 287 ----~~~l~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~-~~~~l~~ 355 (463)
T PRK12416 287 ----SNELNEQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSG-KQKLLVR 355 (463)
T ss_pred ----CcchhHHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCC-CCeEEEE
Confidence 1345667889999999999999997632223 345556554432 222355665 66654 3455555
No 6
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.01 E-value=5.6e-09 Score=94.32 Aligned_cols=127 Identities=14% Similarity=0.151 Sum_probs=91.0
Q ss_pred eCCCchHHH-HHHhcCC---CCeeEcCeeEEEEEeecCCCCeEEEe-CCCcccccccEEEecCCCCCccchhcccCCCCC
Q 026682 74 GVPGMNSIC-KALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSG-LDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPP 148 (235)
Q Consensus 74 g~~GM~~l~-~~La~~l---~~~i~~~~~V~~i~~~~~~~~w~l~~-~~G~~~~~~d~VVlA~~~~pap~~~~ll~~p~~ 148 (235)
..+||+++. +.|++.+ +.+|+++++|++|+. .+++|.+.. .+|+. ..||+||+| +|++++..+|.
T Consensus 191 ~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~--~~~~~~~~~~~~g~~-~~~d~vi~a---~p~~~~~~ll~---- 260 (419)
T TIGR03467 191 PRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEA--NAGGIRALVLSGGET-LPADAVVLA---VPPRHAASLLP---- 260 (419)
T ss_pred eCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEE--cCCcceEEEecCCcc-ccCCEEEEc---CCHHHHHHhCC----
Confidence 357998765 4366533 678999999999997 667766543 25544 479999999 99999988863
Q ss_pred CCCCcchHHHHHhcCCCCcceEEEEEeccCCCCCCCccceEecCCCcEEEEEeCCCCCCCCCCCceEEEE
Q 026682 149 LDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANRLCKDCN 218 (235)
Q Consensus 149 ~~~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~~~~~~~g~~~~~~~~l~wi~~~ssKpgR~~~~~~wvl~ 218 (235)
. ++..+.+++++|.||+++++.|+++++ .+.+++.+.+ .+..|+++++.+++... ..+++++
T Consensus 261 ---~--~~~~~~l~~~~~~~~~~v~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~ 322 (419)
T TIGR03467 261 ---G--EDLGALLTALGYSPITTVHLRLDRAVR-LPAPMVGLVG-GLAQWLFDRGQLAGEPG-YLAVVIS 322 (419)
T ss_pred ---C--chHHHHHhhcCCcceEEEEEEeCCCcC-CCCCeeeecC-CceeEEEECCcCCCCCC-EEEEEEe
Confidence 1 245667889999999999999999875 2333333433 47899988777765543 3355566
No 7
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.94 E-value=8.5e-09 Score=94.46 Aligned_cols=125 Identities=14% Similarity=0.196 Sum_probs=101.7
Q ss_pred eEEeCCCchHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccchhcccCCCCCCC
Q 026682 71 KYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLD 150 (235)
Q Consensus 71 ~yvg~~GM~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~ll~~p~~~~ 150 (235)
.+...+||++|.++|++.+..+|+++++|+.|.+ +..++.+.+.+|.. ..||.||+| +|++.++.+|+
T Consensus 207 ~~~~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~--~~~~~~~~~~~g~~-~~~D~VI~t---~p~~~l~~ll~------ 274 (444)
T COG1232 207 FGYLRGGLQSLIEALAEKLEAKIRTGTEVTKIDK--KGAGKTIVDVGGEK-ITADGVIST---APLPELARLLG------ 274 (444)
T ss_pred ccccCccHHHHHHHHHHHhhhceeecceeeEEEE--cCCccEEEEcCCce-EEcceEEEc---CCHHHHHHHcC------
Confidence 4555899999999999999878999999999997 66677777777765 479999999 99999999986
Q ss_pred CCcchHHHHHhcCCCCcceEEEEEeccCC-C-CCCCccceEecCCCc-EEEEEeCCCC-CCCCC
Q 026682 151 LTFAPDLAVKLEEIPVNPCFALMLAFSEP-L-SSIPVKGFSFQDSEV-LSWAHCDSSK-PGRSA 210 (235)
Q Consensus 151 ~~~~~~l~~~l~~v~~~p~~~v~~~~~~~-~-~~~~~~g~~~~~~~~-l~wi~~~ssK-pgR~~ 210 (235)
. ......+..+.|.+..+|.++|+.+ . ..+...|+.+.+..+ +.-+.++|.| |.+.+
T Consensus 275 -~--~~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p 335 (444)
T COG1232 275 -D--EAVSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAP 335 (444)
T ss_pred -C--cchhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEecccCCCCCC
Confidence 2 3456778889999999999999986 1 113556888887766 7777788888 88876
No 8
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.88 E-value=1.1e-08 Score=92.54 Aligned_cols=134 Identities=19% Similarity=0.213 Sum_probs=105.4
Q ss_pred CceEEeCCCchHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCC-CcccccccEEEecCCCCCccchhcccCCCC
Q 026682 69 NKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD-GQSLGQFNGVVASDKNVVSPRFRDVTGRPP 147 (235)
Q Consensus 69 ~~~yvg~~GM~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~-G~~~~~~d~VVlA~~~~pap~~~~ll~~p~ 147 (235)
.+.|--.+||..|+++++++++..|+++++|.+|.+ .+++++|++.+ |+. ..|.+|+| +|...+.++.=.|
T Consensus 199 ~~~~~~~GGmd~la~Afa~ql~~~I~~~~~V~rI~q--~~~gV~Vt~~~~~~~--~ad~~i~t---iPl~~l~qI~f~P- 270 (450)
T COG1231 199 TQMLQRLGGMDQLAEAFAKQLGTRILLNEPVRRIDQ--DGDGVTVTADDVGQY--VADYVLVT---IPLAILGQIDFAP- 270 (450)
T ss_pred chhhccCccHHHHHHHHHHHhhceEEecCceeeEEE--cCCeEEEEeCCcceE--EecEEEEe---cCHHHHhhcccCC-
Confidence 344444599999999999999999999999999997 88999999988 543 57999999 7776655553211
Q ss_pred CCCCCcchHHHHHhcCCCCcceEEEEEeccCCCCC-CC-ccceEecCCCcEEEEEeCCCCCCCCCCCceEEEEc
Q 026682 148 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS-IP-VKGFSFQDSEVLSWAHCDSSKPGRSANRLCKDCNC 219 (235)
Q Consensus 148 ~~~~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~~~-~~-~~g~~~~~~~~l~wi~~~ssKpgR~~~~~~wvl~a 219 (235)
.+.++..+++..++|.+|....+.|++|+|. .. +.|..+.|.. +..++.+|+ +.-+. .-||++
T Consensus 271 ----~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~-~~~i~~~s~-~~~~G---~gVl~g 335 (450)
T COG1231 271 ----LLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLG-LGFISYPSA-PFADG---PGVLLG 335 (450)
T ss_pred ----CCCHHHHHHhcCcCcchheeeeeecCchhhhhcccCCceEeecCC-cceEecCcc-ccCCC---ceEEEe
Confidence 3456888999999999999999999999985 35 6777787764 889988887 54443 245554
No 9
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.88 E-value=3.3e-08 Score=96.49 Aligned_cols=99 Identities=11% Similarity=0.042 Sum_probs=80.4
Q ss_pred CceEEeCCCchHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccchhcc---cCC
Q 026682 69 NKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDV---TGR 145 (235)
Q Consensus 69 ~~~yvg~~GM~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~l---l~~ 145 (235)
...+...+||++|+++|++.++ |+++++|++|.+ .+++|.+. .+|+. ..||+||+| +|.+.+... + .
T Consensus 427 G~~~~v~GG~~~Li~aLa~~L~--I~ln~~V~~I~~--~~dgV~V~-~~G~~-~~AD~VIvT---vPl~vLk~~~I~F-~ 496 (808)
T PLN02328 427 GDHCFIPGGNDTFVRELAKDLP--IFYERTVESIRY--GVDGVIVY-AGGQE-FHGDMVLCT---VPLGVLKKGSIEF-Y 496 (808)
T ss_pred CeEEEECCcHHHHHHHHHhhCC--cccCCeeEEEEE--cCCeEEEE-eCCeE-EEcCEEEEC---CCHHHHhhccccc-C
Confidence 3467788999999999999875 999999999998 77889884 45654 379999999 999886631 2 1
Q ss_pred CCCCCCCcchHHHHHhcCCCCcceEEEEEeccCCCCC
Q 026682 146 PPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS 182 (235)
Q Consensus 146 p~~~~~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~~~ 182 (235)
| ++.+...++++++.|.++..+++.|++++|.
T Consensus 497 P-----~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~ 528 (808)
T PLN02328 497 P-----ELPQRKKDAIQRLGYGLLNKVALLFPYNFWG 528 (808)
T ss_pred C-----CCCHHHHHHHHcCCCcceEEEEEEeCCcccc
Confidence 2 3445677889999999999999999998774
No 10
>PLN02529 lysine-specific histone demethylase 1
Probab=98.82 E-value=7.9e-08 Score=93.26 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=80.2
Q ss_pred CceEEeCCCchHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccchhcc-cC-CC
Q 026682 69 NKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDV-TG-RP 146 (235)
Q Consensus 69 ~~~yvg~~GM~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~l-l~-~p 146 (235)
...+...+||++|+++|++.++ |+++++|++|++ .+++|+|.+.+ +. ..||+||+| +|.+.+.+. +. .|
T Consensus 347 G~~~~i~GG~~~Li~aLA~~L~--IrLnt~V~~I~~--~~dGVtV~t~~-~~-~~AD~VIVT---VPlgVLk~~~I~F~P 417 (738)
T PLN02529 347 GDHCFLAGGNWRLINALCEGVP--IFYGKTVDTIKY--GNDGVEVIAGS-QV-FQADMVLCT---VPLGVLKKRTIRFEP 417 (738)
T ss_pred CceEEECCcHHHHHHHHHhcCC--EEcCCceeEEEE--cCCeEEEEECC-EE-EEcCEEEEC---CCHHHHHhccccCCC
Confidence 3467789999999999999764 999999999998 77889997543 33 378999999 999887643 11 12
Q ss_pred CCCCCCcchHHHHHhcCCCCcceEEEEEeccCCCCC
Q 026682 147 PPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS 182 (235)
Q Consensus 147 ~~~~~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~~~ 182 (235)
++.+...++++++.|.++..+++.|++++|.
T Consensus 418 -----pLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~ 448 (738)
T PLN02529 418 -----ELPRRKLAAIDRLGFGLLNKVAMVFPSVFWG 448 (738)
T ss_pred -----CCCHHHHHHHHcCCCceeEEEEEEeCCcccc
Confidence 3445567889999999999999999999763
No 11
>PLN02268 probable polyamine oxidase
Probab=98.82 E-value=1.1e-07 Score=87.19 Aligned_cols=115 Identities=14% Similarity=0.091 Sum_probs=84.6
Q ss_pred EeCCCchHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccchhcc-cCCCCCCCC
Q 026682 73 VGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDV-TGRPPPLDL 151 (235)
Q Consensus 73 vg~~GM~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~l-l~~p~~~~~ 151 (235)
...+||++|+++|++.+ +|+++++|++|.+ .+++|.|++.+|+. ..||.||+| +|.+.+..+ +...+
T Consensus 195 ~~~~G~~~l~~~l~~~~--~i~~~~~V~~i~~--~~~~v~v~~~~g~~-~~ad~VIva---~P~~~l~~~~i~f~p---- 262 (435)
T PLN02268 195 LMVRGYDPVINTLAKGL--DIRLNHRVTKIVR--RYNGVKVTVEDGTT-FVADAAIIA---VPLGVLKANIIKFEP---- 262 (435)
T ss_pred eecCCHHHHHHHHhccC--ceeCCCeeEEEEE--cCCcEEEEECCCcE-EEcCEEEEe---cCHHHHhcCcceecC----
Confidence 45569999999999855 5999999999997 77889999888864 379999999 999887543 21111
Q ss_pred CcchHHHHHhcCCCCcceEEEEEeccCCCCC-CCccceEecCCCcEEEE
Q 026682 152 TFAPDLAVKLEEIPVNPCFALMLAFSEPLSS-IPVKGFSFQDSEVLSWA 199 (235)
Q Consensus 152 ~~~~~l~~~l~~v~~~p~~~v~~~~~~~~~~-~~~~g~~~~~~~~l~wi 199 (235)
++.+...++++.+.|.++..+++.|++++|. ..+.|...+......|.
T Consensus 263 ~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~~~~g~~~~~~~~~~~~ 311 (435)
T PLN02268 263 ELPEWKEEAISDLGVGIENKIALHFDSVFWPNVEFLGVVAPTSYGCSYF 311 (435)
T ss_pred CCCHHHHHHHHhCCccceeEEEEEeCCCCCCCCceeeccCCCCCCceEE
Confidence 3445567788999999999999999998763 23344434332234444
No 12
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.65 E-value=1.8e-07 Score=83.49 Aligned_cols=125 Identities=21% Similarity=0.345 Sum_probs=91.9
Q ss_pred EEeCCCchHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccchhc-ccCCCCCCC
Q 026682 72 YVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD-VTGRPPPLD 150 (235)
Q Consensus 72 yvg~~GM~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~-ll~~p~~~~ 150 (235)
+.+.+++..+.+.+++..+.+|+++++|++|+. .++++++...+|+. ..||+||+| +|.+.+.. .+. |
T Consensus 205 ~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~--~~~~v~v~~~~g~~-~~ad~VI~a---~p~~~l~~i~~~-p---- 273 (450)
T PF01593_consen 205 TVGMGGLSLALALAAEELGGEIRLNTPVTRIER--EDGGVTVTTEDGET-IEADAVISA---VPPSVLKNILLL-P---- 273 (450)
T ss_dssp EEETTTTHHHHHHHHHHHGGGEESSEEEEEEEE--ESSEEEEEETTSSE-EEESEEEE----S-HHHHHTSEEE-S----
T ss_pred eecccchhHHHHHHHhhcCceeecCCcceeccc--cccccccccccceE-Eecceeeec---Cchhhhhhhhhc-c----
Confidence 344555666666666655678999999999998 67889999999874 479999999 99999885 332 2
Q ss_pred CCcchHHHHHhcCCCCcceEEEEEeccCCCCCC--CccceEecCC-CcEEEEEeCCCCCCC
Q 026682 151 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI--PVKGFSFQDS-EVLSWAHCDSSKPGR 208 (235)
Q Consensus 151 ~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~~~~--~~~g~~~~~~-~~l~wi~~~ssKpgR 208 (235)
++.....++++.+.|.+...+.+.|+++.+.. ...|+...+. ..+.++...+.++++
T Consensus 274 -~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (450)
T PF01593_consen 274 -PLPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGR 333 (450)
T ss_dssp -TSHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSC
T ss_pred -cccccccccccccccCcceeEEEeeecccccccccccceecccCccccccccccccCccc
Confidence 23334567789999999999999999986643 2556666544 468888777777776
No 13
>PLN03000 amine oxidase
Probab=98.62 E-value=5.6e-07 Score=88.31 Aligned_cols=122 Identities=11% Similarity=0.016 Sum_probs=89.4
Q ss_pred CceEEeCCCchHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccchhc---ccCC
Q 026682 69 NKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD---VTGR 145 (235)
Q Consensus 69 ~~~yvg~~GM~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~---ll~~ 145 (235)
...|..++||+.|+++|++.++ |++++.|++|++ .+++++|++.++ . ..+|+||+| +|...+.+ .+ .
T Consensus 371 G~~~~v~GG~~~LieaLa~~L~--I~Ln~~Vt~I~~--~~dgV~V~~~~~-~-~~AD~VIvT---VPlgVLk~~~I~F-~ 440 (881)
T PLN03000 371 GDHCFLPGGNGRLVQALAENVP--ILYEKTVQTIRY--GSNGVKVIAGNQ-V-YEGDMVLCT---VPLGVLKNGSIKF-V 440 (881)
T ss_pred CceEEeCCCHHHHHHHHHhhCC--cccCCcEEEEEE--CCCeEEEEECCc-E-EEeceEEEc---CCHHHHhhCceee-C
Confidence 3467788999999999999875 999999999998 788899986544 3 379999999 98887662 12 1
Q ss_pred CCCCCCCcchHHHHHhcCCCCcceEEEEEeccCCCCCCC--ccceEecCC--CcEEEEEeCCCC
Q 026682 146 PPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP--VKGFSFQDS--EVLSWAHCDSSK 205 (235)
Q Consensus 146 p~~~~~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~~~~~--~~g~~~~~~--~~l~wi~~~ssK 205 (235)
| ++.+...++++.+.|...-.+.+.|++++|..+ ..|.++.+. ....+++.+.++
T Consensus 441 P-----pLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~sp 499 (881)
T PLN03000 441 P-----ELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAP 499 (881)
T ss_pred C-----CCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCCCceeEEEeCCCC
Confidence 2 344566788999999999999999999987433 334444321 123344455544
No 14
>PRK07233 hypothetical protein; Provisional
Probab=98.54 E-value=1.1e-06 Score=79.96 Aligned_cols=98 Identities=19% Similarity=0.299 Sum_probs=77.9
Q ss_pred eEEeCCCchHHHHHHhcCC---CCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccchhcccCCCC
Q 026682 71 KYVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPP 147 (235)
Q Consensus 71 ~yvg~~GM~~l~~~La~~l---~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~ll~~p~ 147 (235)
.+...+||.+|+++|++.+ +.+|+++++|.+|+. ++++|.+...+|+. ..+|+||+| +|.+.+..++.
T Consensus 190 ~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~--~~~~~~~~~~~~~~-~~ad~vI~a---~p~~~~~~ll~--- 260 (434)
T PRK07233 190 LGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVI--DGGGVTGVEVDGEE-EDFDAVIST---APPPILARLVP--- 260 (434)
T ss_pred EeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEE--cCCceEEEEeCCce-EECCEEEEC---CCHHHHHhhcC---
Confidence 3455899999999998765 568999999999987 66778655555544 469999999 99998888873
Q ss_pred CCCCCcchHHHHHhcCCCCcceEEEEEeccCCCC
Q 026682 148 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 181 (235)
Q Consensus 148 ~~~~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~~ 181 (235)
...+...+.++.++|.+++++.+.|++++.
T Consensus 261 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 290 (434)
T PRK07233 261 ----DLPADVLARLRRIDYQGVVCMVLKLRRPLT 290 (434)
T ss_pred ----CCcHHHHhhhcccCccceEEEEEEecCCCC
Confidence 233456677889999999999999999753
No 15
>PLN02568 polyamine oxidase
Probab=98.47 E-value=1.1e-06 Score=83.12 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=81.9
Q ss_pred ceEEeCCCchHHHHHHhcCCC-CeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccchhc-------
Q 026682 70 KKYVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD------- 141 (235)
Q Consensus 70 ~~yvg~~GM~~l~~~La~~l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~------- 141 (235)
..+...+||++|+++|++.+. .+|+++++|++|++ .+++|+|.+.+|+. ..||.||+| +|.+.+..
T Consensus 233 ~~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~--~~~~v~V~~~dG~~-~~aD~VIvT---vPl~vL~~~~~~~~i 306 (539)
T PLN02568 233 EEITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEW--QDEPVKLHFADGST-MTADHVIVT---VSLGVLKAGIGEDSG 306 (539)
T ss_pred CeEEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEE--eCCeEEEEEcCCCE-EEcCEEEEc---CCHHHHhhccccccc
Confidence 356778999999999999884 56999999999997 67889999988864 379999999 99887764
Q ss_pred ccCCCCCCCCCcchHHHHHhcCCCCcceEEEEEeccCCCC
Q 026682 142 VTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 181 (235)
Q Consensus 142 ll~~p~~~~~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~~ 181 (235)
.+. | ++.+...++++.+.|.....+.+.|++++|
T Consensus 307 ~F~-P-----~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW 340 (539)
T PLN02568 307 LFS-P-----PLPDFKTDAISRLGFGVVNKLFVELSPRPD 340 (539)
T ss_pred eec-C-----CCCHHHHHHHHhcCCceeeEEEEEecCCCC
Confidence 232 2 344445678999999999999999999865
No 16
>PLN02976 amine oxidase
Probab=98.41 E-value=3.5e-06 Score=85.94 Aligned_cols=103 Identities=12% Similarity=0.099 Sum_probs=79.1
Q ss_pred ceEEeCCCchHHHHHHhcCCCCeeEcCeeEEEEEeec--------CCCCeEEEeCCCcccccccEEEecCCCCCccchhc
Q 026682 70 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLE--------DKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD 141 (235)
Q Consensus 70 ~~yvg~~GM~~l~~~La~~l~~~i~~~~~V~~i~~~~--------~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~ 141 (235)
..|...+||++|+++|++.++ |+++++|++|.+.. .++++.|.+.+|+.+ .||+||+| +|...+..
T Consensus 927 ~~~rIkGGYqqLIeALAe~L~--IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetf-tADaVIVT---VPLGVLKa 1000 (1713)
T PLN02976 927 AHCMIKGGYSNVVESLAEGLD--IHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEF-LGDAVLIT---VPLGCLKA 1000 (1713)
T ss_pred ceEEeCCCHHHHHHHHHhhCC--eecCCeEEEEEecCCcccccccCCCcEEEEECCCCEE-EeceEEEe---CCHHHhhh
Confidence 577889999999999999774 99999999998721 146799998888654 69999999 88776542
Q ss_pred c-cCCCCCCCCCcchHHHHHhcCCCCcceEEEEEeccCCCCC
Q 026682 142 V-TGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS 182 (235)
Q Consensus 142 l-l~~p~~~~~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~~~ 182 (235)
- +...| ++.+...++++.+.|...-.+++.|++++|.
T Consensus 1001 g~I~FsP----PLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~ 1038 (1713)
T PLN02976 1001 ETIKFSP----PLPDWKYSSIQRLGFGVLNKVVLEFPEVFWD 1038 (1713)
T ss_pred cccccCC----cccHHHHHHHHhhccccceEEEEEeCCcccc
Confidence 1 11111 3333445678999999999999999999874
No 17
>PLN02676 polyamine oxidase
Probab=98.36 E-value=2.8e-06 Score=79.31 Aligned_cols=98 Identities=17% Similarity=0.128 Sum_probs=76.8
Q ss_pred CCCchHHHHHHhcCC---------CCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccchhc-ccC
Q 026682 75 VPGMNSICKALCHQP---------GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD-VTG 144 (235)
Q Consensus 75 ~~GM~~l~~~La~~l---------~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~-ll~ 144 (235)
.+|+++|++.|++.+ +.+|+++++|++|.. .+++++|.+.+|+.+ .+|+||+| +|...+.. .+.
T Consensus 220 ~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~--~~~gV~V~~~~G~~~-~a~~VIvt---vPl~vLk~~~I~ 293 (487)
T PLN02676 220 PRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISY--SKNGVTVKTEDGSVY-RAKYVIVS---VSLGVLQSDLIK 293 (487)
T ss_pred CCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEE--cCCcEEEEECCCCEE-EeCEEEEc---cChHHhccCceE
Confidence 579999999999865 256999999999997 778899999988643 79999999 87765543 111
Q ss_pred CCCCCCCCcchHHHHHhcCCCCcceEEEEEeccCCCCC
Q 026682 145 RPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS 182 (235)
Q Consensus 145 ~p~~~~~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~~~ 182 (235)
..| ++.+...++++.+.|.....+.+.|++|+|.
T Consensus 294 F~P----~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~ 327 (487)
T PLN02676 294 FKP----PLPDWKIEAIYQFDMAVYTKIFLKFPYKFWP 327 (487)
T ss_pred EeC----CCCHHHHHHHHhCCceeeEEEEEEeCCCCCC
Confidence 111 3334456788999999999999999999874
No 18
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.28 E-value=3.6e-06 Score=74.18 Aligned_cols=98 Identities=13% Similarity=0.049 Sum_probs=84.1
Q ss_pred CCCceEEeCCCchHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccchhcccCCC
Q 026682 67 GMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRP 146 (235)
Q Consensus 67 ~~~~~yvg~~GM~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~ll~~p 146 (235)
..+.+++..+|-.+-++.|+++++.+|++++.|.+|.+ ..+|..|...+|+. ..||+||+| +.+.|++.||.
T Consensus 208 ~rp~wrtV~ggS~~yvq~laa~~~~~i~t~~~V~~l~r--lPdGv~l~~~~G~s-~rFD~vViA---th~dqAl~mL~-- 279 (447)
T COG2907 208 KRPTWRTVAGGSRAYVQRLAADIRGRIETRTPVCRLRR--LPDGVVLVNADGES-RRFDAVVIA---THPDQALALLD-- 279 (447)
T ss_pred CCCceeEcccchHHHHHHHhccccceeecCCceeeeee--CCCceEEecCCCCc-cccceeeee---cChHHHHHhcC--
Confidence 34677888999999999999988888999999999998 67888888888865 479999999 99999999996
Q ss_pred CCCCCCcchHHHHHhcCCCCcceEEEEEecc
Q 026682 147 PPLDLTFAPDLAVKLEEIPVNPCFALMLAFS 177 (235)
Q Consensus 147 ~~~~~~~~~~l~~~l~~v~~~p~~~v~~~~~ 177 (235)
...|+-.+.|.++.|+..-+|+..+.
T Consensus 280 -----e~sp~e~qll~a~~Ys~n~aVlhtd~ 305 (447)
T COG2907 280 -----EPSPEERQLLGALRYSANTAVLHTDA 305 (447)
T ss_pred -----CCCHHHHHHHHhhhhhhceeEEeecc
Confidence 33455566999999999999988776
No 19
>PRK07208 hypothetical protein; Provisional
Probab=98.13 E-value=1.9e-05 Score=73.27 Aligned_cols=95 Identities=14% Similarity=0.103 Sum_probs=73.9
Q ss_pred CCCchHHHHHHhcCC---CCeeEcCeeEEEEEeecCCCCeE--EEe--CCCcc-cccccEEEecCCCCCccchhcccCCC
Q 026682 75 VPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWS--VSG--LDGQS-LGQFNGVVASDKNVVSPRFRDVTGRP 146 (235)
Q Consensus 75 ~~GM~~l~~~La~~l---~~~i~~~~~V~~i~~~~~~~~w~--l~~--~~G~~-~~~~d~VVlA~~~~pap~~~~ll~~p 146 (235)
.+||++|++.|++.+ +.+|+++++|++|.. ++++|. +.. .+|+. ...+|.||+| +|++.+..++. |
T Consensus 214 ~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~--~~~~~v~~~~~~~~~g~~~~~~ad~VI~a---~p~~~l~~~l~-~ 287 (479)
T PRK07208 214 KLGPGQLWETAAEKLEALGGKVVLNAKVVGLHH--DGDGRIAVVVVNDTDGTEETVTADQVISS---MPLRELVAALD-P 287 (479)
T ss_pred CCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEE--cCCcEEEEEEEEcCCCCEEEEEcCEEEEC---CCHHHHHHhcC-C
Confidence 799999999998755 678999999999997 666653 332 24531 2368999999 99999888874 2
Q ss_pred CCCCCCcchHHHHHhcCCCCcceEEEEEeccCCC
Q 026682 147 PPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPL 180 (235)
Q Consensus 147 ~~~~~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~ 180 (235)
++.++....++.++|.|+.++.+.|+++.
T Consensus 288 -----~~~~~~~~~~~~l~~~~~~~v~l~~~~~~ 316 (479)
T PRK07208 288 -----PPPPEVRAAAAGLRYRDFITVGLLVKELN 316 (479)
T ss_pred -----CCCHHHHHHHhCCCcceeEEEEEEecCCC
Confidence 23456677888999999999999999874
No 20
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.08 E-value=7.1e-05 Score=69.76 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=71.6
Q ss_pred EEeCCCchHHHHHHhcCC---CCeeEcCeeEEEEEeecCCCC--eEEEeCC--C--cccccccEEEecCCCCCccchhcc
Q 026682 72 YVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNL--WSVSGLD--G--QSLGQFNGVVASDKNVVSPRFRDV 142 (235)
Q Consensus 72 yvg~~GM~~l~~~La~~l---~~~i~~~~~V~~i~~~~~~~~--w~l~~~~--G--~~~~~~d~VVlA~~~~pap~~~~l 142 (235)
|...+||++|+++|++.+ +.+|+++++|++|.. ++++ |.+..++ | +. ..+|.||++ +|+..+..|
T Consensus 225 ~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~--~~~~~~gv~~~~~~~~~~~~-~~ad~VI~~---~~~~~~~~l 298 (492)
T TIGR02733 225 WHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHT--KGGRAGWVVVVDSRKQEDLN-VKADDVVAN---LPPQSLLEL 298 (492)
T ss_pred eeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEE--eCCeEEEEEEecCCCCceEE-EECCEEEEC---CCHHHHHHh
Confidence 557899999999999866 789999999999986 4442 4433222 2 22 369999999 999888888
Q ss_pred cCCCCCCCCCcchHHHHHhcCCCCcc-eEEEEEeccCC
Q 026682 143 TGRPPPLDLTFAPDLAVKLEEIPVNP-CFALMLAFSEP 179 (235)
Q Consensus 143 l~~p~~~~~~~~~~l~~~l~~v~~~p-~~~v~~~~~~~ 179 (235)
+.-+ .+.+++.+.++.++|++ .+++++++++.
T Consensus 299 l~~~-----~~~~~~~~~~~~~~~s~~~~~v~l~~~~~ 331 (492)
T TIGR02733 299 LGPL-----GLPPGYRKRLKKLPEPSGAFVFYLGVKRA 331 (492)
T ss_pred cCcc-----cCCHHHHHHHhcCCCCCceEEEEEeeccc
Confidence 7411 23446677788899887 44788999874
No 21
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=98.07 E-value=1.9e-05 Score=71.26 Aligned_cols=132 Identities=18% Similarity=0.245 Sum_probs=101.2
Q ss_pred CCceEEeCCCchHHHHHHhcCCC---CeeEcCeeEEEEEeecCCCCeEEEeC--CCcccccccEEEecCCCCCccchhcc
Q 026682 68 MNKKYVGVPGMNSICKALCHQPG---VESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASDKNVVSPRFRDV 142 (235)
Q Consensus 68 ~~~~yvg~~GM~~l~~~La~~l~---~~i~~~~~V~~i~~~~~~~~w~l~~~--~G~~~~~~d~VVlA~~~~pap~~~~l 142 (235)
..+.|...+||..++++|.+.++ +.|.++-.+..+... ..+.|.+... +|.....++.+++| +|++-.+.+
T Consensus 238 ~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~-~~~~~~~tl~~~~~~~~~~~~~~~~t---~~~~k~a~l 313 (491)
T KOG1276|consen 238 KWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKS-RSGNWSLTLVDHSGTQRVVVSYDAAT---LPAVKLAKL 313 (491)
T ss_pred ccchhhhhhhHhHhHHHHHHHhcccchhhhccccccccccc-ccCCceeEeEcCCCceeeeccccccc---cchHHhhhh
Confidence 45678889999999999999886 345677777777642 4566988764 45544467777788 999999999
Q ss_pred cCCCCCCCCCcchHHHHHhcCCCCcceEEEEEeccCC-CCCCCccceE--ec-----CCCcEEEEEeCCCCCCCCCC
Q 026682 143 TGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEP-LSSIPVKGFS--FQ-----DSEVLSWAHCDSSKPGRSAN 211 (235)
Q Consensus 143 l~~p~~~~~~~~~~l~~~l~~v~~~p~~~v~~~~~~~-~~~~~~~g~~--~~-----~~~~l~wi~~~ssKpgR~~~ 211 (235)
+. ...+.++.+|.+|+|.|+.+|.+.|+.+ .. .|.+||. ++ +.+.|+-|++....|.|.+.
T Consensus 314 l~-------~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~-~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s 382 (491)
T KOG1276|consen 314 LR-------GLQNSLSNALSEIPYVPVAVVNTYYPKEKID-LPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPS 382 (491)
T ss_pred cc-------ccchhhhhhhhcCCCCceEEEEEeccCcccc-cccccceeeccCCCCCCCceeEEEeecccCCCCCCC
Confidence 85 5667788999999999999999999997 33 4667666 55 22479999777777988873
No 22
>PLN02612 phytoene desaturase
Probab=98.06 E-value=3.7e-05 Score=73.17 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=71.9
Q ss_pred hHHHHHHhc---CCCCeeEcCeeEEEEEeecCCCC--eEEEeCCCcccccccEEEecCCCCCccchhcccCCCCCCCCCc
Q 026682 79 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNL--WSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTF 153 (235)
Q Consensus 79 ~~l~~~La~---~l~~~i~~~~~V~~i~~~~~~~~--w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~ll~~p~~~~~~~ 153 (235)
..|++.|++ .+|.+|+++++|++|+. ++++ +.+.+.+|+. ..+|+||+| +|+..+..|+. .. ..
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~--~~~g~v~~v~~~~G~~-~~ad~VI~a---~p~~~l~~Ll~--~~---~~ 376 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIEL--NDDGTVKHFLLTNGSV-VEGDVYVSA---TPVDILKLLLP--DQ---WK 376 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEE--CCCCcEEEEEECCCcE-EECCEEEEC---CCHHHHHHhCc--ch---hc
Confidence 455565554 25789999999999986 4445 3355567764 368999999 98877776663 11 01
Q ss_pred chHHHHHhcCCCCcceEEEEEeccCCCCCCCccceEecCCC
Q 026682 154 APDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSE 194 (235)
Q Consensus 154 ~~~l~~~l~~v~~~p~~~v~~~~~~~~~~~~~~g~~~~~~~ 194 (235)
...+.+.+.++.+.|+.++.+.|+++++ .+.++.++.+.+
T Consensus 377 ~~~~~~~l~~l~~~~v~~v~l~~dr~~~-~~~~~~~~~~~~ 416 (567)
T PLN02612 377 EIPYFKKLDKLVGVPVINVHIWFDRKLK-NTYDHLLFSRSP 416 (567)
T ss_pred CcHHHHHHHhcCCCCeEEEEEEECcccC-CCCCceeecCCC
Confidence 1245666777889999999999999975 345566554433
No 23
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.00 E-value=4.8e-05 Score=70.07 Aligned_cols=107 Identities=16% Similarity=0.233 Sum_probs=69.5
Q ss_pred chHHHHHHhcC---CCCeeEcCeeEEEEEeecCCCC----eEEEeCCCcc--cccccEEEecCCCCCccchhcccCCCCC
Q 026682 78 MNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNL----WSVSGLDGQS--LGQFNGVVASDKNVVSPRFRDVTGRPPP 148 (235)
Q Consensus 78 M~~l~~~La~~---l~~~i~~~~~V~~i~~~~~~~~----w~l~~~~G~~--~~~~d~VVlA~~~~pap~~~~ll~~p~~ 148 (235)
|..+++.|++. .+.+|+++++|++|.. .+++ +++...+|+. ...+|.||+| +|++.+..||. ..
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~--~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a---~p~~~~~~lL~--~~ 284 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVL--NEDGSVKHFVLADGEGQRRFEVTADAYVSA---MPVDIFKLLLP--QP 284 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEE--CCCCCEEEEEEecCCCCceeEEECCEEEEc---CCHHHHHhhCc--hh
Confidence 44455544443 4789999999999975 3333 3443222221 2368999999 99988877763 11
Q ss_pred CCCCcchHHHHHhcCCCCcceEEEEEeccCCCCCCCccceEecCCCcE
Q 026682 149 LDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVL 196 (235)
Q Consensus 149 ~~~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~~~~~~~g~~~~~~~~l 196 (235)
.....+.+.+..++|.|+..+.+.|++++. +.+++.+.+++.+
T Consensus 285 ---~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~--~~~~~~~~~~~~~ 327 (453)
T TIGR02731 285 ---WKQMPFFQKLNGLEGVPVINVHIWFDRKLT--TVDHLLFSRSPLL 327 (453)
T ss_pred ---hhcCHHHHHhhcCCCCcEEEEEEEEccccC--CCCceeeeCCCcc
Confidence 001245677788899999999999999865 2345556554433
No 24
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.91 E-value=4.1e-05 Score=71.29 Aligned_cols=93 Identities=11% Similarity=0.062 Sum_probs=66.6
Q ss_pred chHHHHHHhcCCCCeeEcCeeEEEEEeecCC--CCeE-E---EeCCCc--ccccccEEEecCCCCCccchhcccCCCCCC
Q 026682 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDK--NLWS-V---SGLDGQ--SLGQFNGVVASDKNVVSPRFRDVTGRPPPL 149 (235)
Q Consensus 78 M~~l~~~La~~l~~~i~~~~~V~~i~~~~~~--~~w~-l---~~~~G~--~~~~~d~VVlA~~~~pap~~~~ll~~p~~~ 149 (235)
++.++++|.+ .|.+|+++++|++|+. ++ ++|. + ...+|+ ....+|+||+| +|++.++.|+. ..
T Consensus 222 ~~pl~~~L~~-~Gg~i~~~~~V~~I~~--~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA---~p~~~~~~Ll~--~~- 292 (474)
T TIGR02732 222 TKPILEYIEA-RGGKFHLRHKVREIKY--EKSSDGSTRVTGLIMSKPEGKKVIKADAYVAA---CDVPGIKRLLP--QE- 292 (474)
T ss_pred HHHHHHHHHH-CCCEEECCCEEEEEEE--ecCCCCceeEEEEEEecCCcceEEECCEEEEC---CChHHHHhhCC--hh-
Confidence 3457888877 5789999999999986 33 3452 3 343331 22368999999 99999999974 10
Q ss_pred CCCcchHHHHHhcCCCCcceEEEEEeccCCCC
Q 026682 150 DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 181 (235)
Q Consensus 150 ~~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~~ 181 (235)
.......+.+..+.|.||.+|.+.|++++.
T Consensus 293 --~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~ 322 (474)
T TIGR02732 293 --WRQFEEFDNIYKLDAVPVATVQLRYDGWVT 322 (474)
T ss_pred --hhcCHHHhhHhcCCCCCeEEEEEEeccccc
Confidence 011235667889999999999999998754
No 25
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.34 E-value=0.0027 Score=59.29 Aligned_cols=97 Identities=19% Similarity=0.146 Sum_probs=66.8
Q ss_pred eEEeCCCchHHHHHHhcC---CCCeeEcCeeEEEEEeecCCCC-eEEEeCCCcccccccEEEecCCCCCccchhcccCCC
Q 026682 71 KYVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRP 146 (235)
Q Consensus 71 ~yvg~~GM~~l~~~La~~---l~~~i~~~~~V~~i~~~~~~~~-w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~ll~~p 146 (235)
.|...+||..++++|++. .|.+|++++.|.+|.. ++++ |.|..++|+.+ .+|.||++ ++.+.+...| ++
T Consensus 211 ~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~--~~~~~~~V~~~~g~~~-~ad~VI~a---~~~~~~~~~l-~~ 283 (502)
T TIGR02734 211 VWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIET--EGGRATAVHLADGERL-DADAVVSN---ADLHHTYRRL-LP 283 (502)
T ss_pred EEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEe--eCCEEEEEEECCCCEE-ECCEEEEC---CcHHHHHHHh-cC
Confidence 445678999999999873 4789999999999986 4433 77888887653 69999999 8887777544 23
Q ss_pred CCCCCCcchHHHHHhcCCCCc-ceEEEEEecc
Q 026682 147 PPLDLTFAPDLAVKLEEIPVN-PCFALMLAFS 177 (235)
Q Consensus 147 ~~~~~~~~~~l~~~l~~v~~~-p~~~v~~~~~ 177 (235)
.+. ..+...+.++..++. .++++.++++
T Consensus 284 ~~~---~~~~~~~~~~~~~~s~s~~~~~lgl~ 312 (502)
T TIGR02734 284 NHP---RRRYPAARLSRKRPSPSLFVLYFGLL 312 (502)
T ss_pred ccc---cccccccccccCCcCCeeeEEEEeec
Confidence 211 011223445555544 6677788887
No 26
>PLN02487 zeta-carotene desaturase
Probab=97.14 E-value=0.0022 Score=61.11 Aligned_cols=101 Identities=7% Similarity=0.019 Sum_probs=69.1
Q ss_pred EEeCCCchH-HHHHHhcC---CCCeeEcCeeEEEEEeecCCCC----eEEEe---CCCcccccccEEEecCCCCCccchh
Q 026682 72 YVGVPGMNS-ICKALCHQ---PGVESKFGVGVGRFEWLEDKNL----WSVSG---LDGQSLGQFNGVVASDKNVVSPRFR 140 (235)
Q Consensus 72 yvg~~GM~~-l~~~La~~---l~~~i~~~~~V~~i~~~~~~~~----w~l~~---~~G~~~~~~d~VVlA~~~~pap~~~ 140 (235)
+...+|+.. |++.+++. .|.+|+++++|++|....++++ +.+.. .+++. ..+|+||+| +|.+.+.
T Consensus 287 ~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~-~~aD~VV~A---~p~~~~~ 362 (569)
T PLN02487 287 RMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEI-VKADAYVAA---CDVPGIK 362 (569)
T ss_pred eecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceE-EECCEEEEC---CCHHHHH
Confidence 344688885 77766653 4789999999999987211233 33444 22323 358999999 9999888
Q ss_pred cccCCCCCCCCCcchHHHHHhcCCCCcceEEEEEeccCCCC
Q 026682 141 DVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 181 (235)
Q Consensus 141 ~ll~~p~~~~~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~~ 181 (235)
.|+. ... ...+ ..+.+..+.+.||.+|.+.|++++.
T Consensus 363 ~Llp--~~~--~~~~-~~~~l~~L~~~pi~tv~L~~d~~v~ 398 (569)
T PLN02487 363 RLLP--EQW--REYE-FFDNIYKLVGVPVVTVQLRYNGWVT 398 (569)
T ss_pred HhCC--chh--hccH-HHhHHhcCCCeeEEEEEEEeccccc
Confidence 8863 210 1122 2567788889999999999998754
No 27
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=96.72 E-value=0.0076 Score=56.32 Aligned_cols=100 Identities=12% Similarity=0.095 Sum_probs=68.1
Q ss_pred ceEEeCCCchHHHHHHhcC---CCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccchh-cccCC
Q 026682 70 KKYVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFR-DVTGR 145 (235)
Q Consensus 70 ~~yvg~~GM~~l~~~La~~---l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~-~ll~~ 145 (235)
..|.-.+||..|+++|++. .|.+|+++++|.+|.. .++..+.+..++|+.+ .+|.||++ +.+..+. .|++
T Consensus 220 g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~-~ad~vV~a---~~~~~~~~~Ll~- 293 (493)
T TIGR02730 220 GINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKI-YAKRIVSN---ATRWDTFGKLLK- 293 (493)
T ss_pred eEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEE-EcCEEEEC---CChHHHHHHhCC-
Confidence 3466788999999988774 4689999999999986 2344566777778643 68999998 6555555 3542
Q ss_pred CCCCCCCcchHHHHHhcCCCCc-ceEEEEEeccCC
Q 026682 146 PPPLDLTFAPDLAVKLEEIPVN-PCFALMLAFSEP 179 (235)
Q Consensus 146 p~~~~~~~~~~l~~~l~~v~~~-p~~~v~~~~~~~ 179 (235)
.. .+.+.....++.+.+. ++++++++++.+
T Consensus 294 -~~---~~~~~~~~~~~~~~~s~s~~~~~l~l~~~ 324 (493)
T TIGR02730 294 -AE---NLPKKEKNWQRNYVKSPSFLSLHLGVKAD 324 (493)
T ss_pred -cc---ccchhhHHHHhhccCCCceEEEEEEecCc
Confidence 11 1222334444565555 488889998875
No 28
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.59 E-value=0.011 Score=54.45 Aligned_cols=104 Identities=16% Similarity=0.232 Sum_probs=74.1
Q ss_pred CCCchHHHHHHhcCCC-Cee--------EcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccc----hhc
Q 026682 75 VPGMNSICKALCHQPG-VES--------KFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPR----FRD 141 (235)
Q Consensus 75 ~~GM~~l~~~La~~l~-~~i--------~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~----~~~ 141 (235)
..|...+.+-|++.+. ..+ +++++|..|.+ ..++...|+..||++ -.||+||+| ++.=- -..
T Consensus 219 ~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~-~~~~~v~l~c~dg~v-~~adhVIvT---vsLGvLk~~h~~ 293 (498)
T KOG0685|consen 219 KKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINW-KNTGEVKLRCSDGEV-FHADHVIVT---VSLGVLKEQHHK 293 (498)
T ss_pred hhHHHHHHHHHhccCCCcchhcCchhhhcccccceeecc-CCCCcEEEEEeCCcE-EeccEEEEE---eechhhhhhhhh
Confidence 4477888888887543 334 45599999997 234668899999987 479999999 43322 222
Q ss_pred ccCCCCCCCCCcchHHHHHhcCCCCcceEEEEEeccCCCCCCCccceE
Q 026682 142 VTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFS 189 (235)
Q Consensus 142 ll~~p~~~~~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~~~~~~~g~~ 189 (235)
|+. | ++..+=.++++++-+...-.+.+.|++|.+..++.++.
T Consensus 294 lF~-P-----~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~ 335 (498)
T KOG0685|consen 294 LFV-P-----PLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQ 335 (498)
T ss_pred hcC-C-----CCCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeE
Confidence 442 2 33345567899999999999999999997744566665
No 29
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.25 E-value=0.0076 Score=48.91 Aligned_cols=56 Identities=20% Similarity=0.356 Sum_probs=40.4
Q ss_pred EEeCCCchHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 72 YVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 72 yvg~~GM~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
|....-+....+.+++..+.+++++++|.++++ ++++|.|+..+|+.+ .+|.||+|
T Consensus 78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~--~~~~w~v~~~~~~~~-~a~~VVlA 133 (203)
T PF13738_consen 78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRR--DGDGWTVTTRDGRTI-RADRVVLA 133 (203)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEE--ETTTEEEEETTS-EE-EEEEEEE-
T ss_pred cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEE--eccEEEEEEEeccee-eeeeEEEe
Confidence 333344555666777777778999999999998 677899999998443 59999999
No 30
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=96.12 E-value=0.018 Score=52.00 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=50.8
Q ss_pred CCceEEeCCCchHHHHHHhcCCCCeeEcCeeEEEEEeecCCCC--eEEEeCC--CcccccccEEEecCCCCCccch
Q 026682 68 MNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNL--WSVSGLD--GQSLGQFNGVVASDKNVVSPRF 139 (235)
Q Consensus 68 ~~~~yvg~~GM~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~--w~l~~~~--G~~~~~~d~VVlA~~~~pap~~ 139 (235)
....|...+|...|++.|.+..+.++ ++++|++|.....++. |+|...+ +.....||.||+| .|-.+.
T Consensus 117 ~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIA---tPl~~~ 188 (368)
T PF07156_consen 117 TGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIA---TPLQQS 188 (368)
T ss_pred cCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEEC---CCcccc
Confidence 35678999999999999999988889 9999999943123333 6676554 3334568999999 777543
No 31
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.81 E-value=0.043 Score=51.62 Aligned_cols=100 Identities=11% Similarity=0.150 Sum_probs=74.5
Q ss_pred ceEEeCCCchHHHHHHhcCCCCeeEcCeeEEEEEeecCCCC-eEEEeCCCcccccccEEEecCCCCCccchhcc-cC-CC
Q 026682 70 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVSPRFRDV-TG-RP 146 (235)
Q Consensus 70 ~~yvg~~GM~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~-w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~l-l~-~p 146 (235)
.+.+..+||..+...|+++ .+|+++++|..|.+ .+++ ..+++++|.. -.+|.||++ +|.+.+..- .. .|
T Consensus 210 ~~~~~~~G~~~v~~~la~~--l~I~~~~~v~~i~~--~~~~~~~~~~~~~~~-~~~d~vvvt---~pl~vLk~~~i~F~P 281 (501)
T KOG0029|consen 210 IHLLMKGGYEPVVNSLAEG--LDIHLNKRVRKIKY--GDDGAVKVTVETGDG-YEADAVVVT---VPLGVLKSGLIEFSP 281 (501)
T ss_pred chhHhhCCccHHHhhcCCC--cceeeceeeEEEEE--ecCCceEEEEECCCe-eEeeEEEEE---ccHHHhccCceeeCC
Confidence 4578899999999999985 46999999999997 3333 3444444433 368999999 877765441 10 11
Q ss_pred CCCCCCcchHHHHHhcCCCCcceEEEEEeccCCCCC
Q 026682 147 PPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS 182 (235)
Q Consensus 147 ~~~~~~~~~~l~~~l~~v~~~p~~~v~~~~~~~~~~ 182 (235)
++......+++.+.+.+.-.+++.|++.+|.
T Consensus 282 -----~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~ 312 (501)
T KOG0029|consen 282 -----PLPRWKQEAIDRLGFGLVNKVILEFPRVFWD 312 (501)
T ss_pred -----CCcHHHHHHHHhcCCCceeEEEEEeccccCC
Confidence 3334567889999999999999999999884
No 32
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.64 E-value=0.061 Score=50.38 Aligned_cols=59 Identities=24% Similarity=0.239 Sum_probs=46.8
Q ss_pred ceEEeCCCchHHHHHHhcC---CCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 70 KKYVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 70 ~~yvg~~GM~~l~~~La~~---l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
-.+...+||.+|+++|++. .|.+|+++++|.+|.- .++.+..+...+|. ...+|.||.+
T Consensus 215 G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~-~~~ad~vv~~ 276 (487)
T COG1233 215 GVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGE-NIEADAVVSN 276 (487)
T ss_pred CeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccc-eeccceeEec
Confidence 4667789999999999884 4789999999999985 23446788877773 3468999988
No 33
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=93.85 E-value=0.19 Score=46.53 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=43.5
Q ss_pred eCCCchHHHHHHh---cCCCCeeEcCeeEEEEEeecCCCC--eEEEeCCCcccccccEEEec
Q 026682 74 GVPGMNSICKALC---HQPGVESKFGVGVGRFEWLEDKNL--WSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 74 g~~GM~~l~~~La---~~l~~~i~~~~~V~~i~~~~~~~~--w~l~~~~G~~~~~~d~VVlA 130 (235)
-..||+.|+++|+ +..|.+++++++|.+|.. ++++ +.|...+|+.. .++.||+.
T Consensus 227 p~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~--~~~g~~~~V~~~~Ge~i-~a~~VV~~ 285 (443)
T PTZ00363 227 PLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVF--DENGKVCGVKSEGGEVA-KCKLVICD 285 (443)
T ss_pred eCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEE--cCCCeEEEEEECCCcEE-ECCEEEEC
Confidence 3799999999998 445789999999999986 4433 67888888653 68999987
No 34
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=92.94 E-value=0.24 Score=45.01 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=48.4
Q ss_pred CCCchHHHHHHhcCC---CCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccc
Q 026682 75 VPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPR 138 (235)
Q Consensus 75 ~~GM~~l~~~La~~l---~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~ 138 (235)
...-+.|++.|...+ +++|+++++|.+|.. ++.+.+|++.+|+. ..+|.||||.-+..-|+
T Consensus 107 sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~--~~~~f~l~t~~g~~-i~~d~lilAtGG~S~P~ 170 (408)
T COG2081 107 SDKASPIVDALLKELEALGVTIRTRSRVSSVEK--DDSGFRLDTSSGET-VKCDSLILATGGKSWPK 170 (408)
T ss_pred ccchHHHHHHHHHHHHHcCcEEEecceEEeEEe--cCceEEEEcCCCCE-EEccEEEEecCCcCCCC
Confidence 345566888777654 699999999999997 66789999999963 36899999977666663
No 35
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=92.75 E-value=0.19 Score=43.80 Aligned_cols=49 Identities=27% Similarity=0.367 Sum_probs=37.5
Q ss_pred chHHHHHHhc---CCCCeeEcCeeEEEEEeecCCCCeE-EEeCCCcccccccEEEec
Q 026682 78 MNSICKALCH---QPGVESKFGVGVGRFEWLEDKNLWS-VSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 78 M~~l~~~La~---~l~~~i~~~~~V~~i~~~~~~~~w~-l~~~~G~~~~~~d~VVlA 130 (235)
...++++|++ ..|++++.+++|.+|.. ++++|+ |.+++|+ + .+|.||+|
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~v~gv~~~~g~-i-~ad~vV~a 198 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV--DGGRVTGVRTSDGE-I-RADRVVLA 198 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEE--ETTEEEEEEETTEE-E-EECEEEE-
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhh--cccccccccccccc-c-ccceeEec
Confidence 4555555554 35789999999999997 788898 9999986 3 68999999
No 36
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=92.51 E-value=0.35 Score=38.02 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=28.8
Q ss_pred EcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 94 KFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 94 ~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
+...+|..|++ .+++|.|...+|..+ .||.||||
T Consensus 119 ~~~~~V~~i~~--~~~~~~v~~~~g~~~-~~d~VvLa 152 (156)
T PF13454_consen 119 HVRAEVVDIRR--DDDGYRVVTADGQSI-RADAVVLA 152 (156)
T ss_pred EEeeEEEEEEE--cCCcEEEEECCCCEE-EeCEEEEC
Confidence 35679999997 788899999999764 79999999
No 37
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=91.60 E-value=0.3 Score=45.54 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=35.0
Q ss_pred hHHHHHH---hcCCCCe--eEcCeeEEEEEeecCCCCeEEEeCCCc-c--cccccEEEec
Q 026682 79 NSICKAL---CHQPGVE--SKFGVGVGRFEWLEDKNLWSVSGLDGQ-S--LGQFNGVVAS 130 (235)
Q Consensus 79 ~~l~~~L---a~~l~~~--i~~~~~V~~i~~~~~~~~w~l~~~~G~-~--~~~~d~VVlA 130 (235)
..+.++| ++..+++ |+++++|.+|++ .+++|.|...++. . ...||+||+|
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~--~~~~w~V~~~~~~~~~~~~~~d~VIvA 168 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEP--VDGKWRVQSKNSGGFSKDEIFDAVVVC 168 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEee--cCCeEEEEEEcCCCceEEEEcCEEEEe
Confidence 3444444 4444544 899999999997 6778999875432 1 2368999998
No 38
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=90.91 E-value=0.46 Score=43.63 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=38.1
Q ss_pred EEeCCCchHHHHHHhc---CCCCeeEcCeeEEEEEeecCCCC-eEEEeCCCcccccccEEEecCCCCCccc
Q 026682 72 YVGVPGMNSICKALCH---QPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVSPR 138 (235)
Q Consensus 72 yvg~~GM~~l~~~La~---~l~~~i~~~~~V~~i~~~~~~~~-w~l~~~~G~~~~~~d~VVlA~~~~pap~ 138 (235)
|-...--.++.+.|.+ .++++|+++++|.+|+. ++++ |.|.++++.. ..+|.||||.=+...|+
T Consensus 102 fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~--~~~~~f~v~~~~~~~-~~a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 102 FPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK--KEDGVFGVKTKNGGE-YEADAVILATGGKSYPK 169 (409)
T ss_dssp EETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE--ETTEEEEEEETTTEE-EEESEEEE----SSSGG
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee--cCCceeEeeccCccc-ccCCEEEEecCCCCccc
Confidence 4444445667777754 34789999999999986 4555 9998855444 37999999955556554
No 39
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=90.85 E-value=0.66 Score=43.67 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=35.4
Q ss_pred hHHHHHHhcCCCCeeEcCeeEEEEEeecC-CCCeEEE---eCCCc-ccccccEEEec
Q 026682 79 NSICKALCHQPGVESKFGVGVGRFEWLED-KNLWSVS---GLDGQ-SLGQFNGVVAS 130 (235)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~-~~~w~l~---~~~G~-~~~~~d~VVlA 130 (235)
.+|++++.+..++++++++.|..|++ . +++|++. +.+|+ ....+|.||++
T Consensus 188 ~aL~~~l~~~~Gv~i~~~~~V~~I~~--~~d~~w~v~v~~t~~g~~~~i~Ad~VV~A 242 (497)
T PRK13339 188 RKLAKHLESHPNAQVKYNHEVVDLER--LSDGGWEVTVKDRNTGEKREQVADYVFIG 242 (497)
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEEE--CCCCCEEEEEEecCCCceEEEEcCEEEEC
Confidence 45555554434688999999999987 5 7789986 33452 11369999998
No 40
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=90.68 E-value=0.46 Score=42.65 Aligned_cols=49 Identities=20% Similarity=0.414 Sum_probs=37.8
Q ss_pred hHHHHHHhcCC--CCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 79 NSICKALCHQP--GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 79 ~~l~~~La~~l--~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
..++++|++.+ +++++.+++|.+|+. ++++|.+.+.+|..+ .+|.||+|
T Consensus 135 ~~~~~~l~~~~~~G~~i~~~~~V~~i~~--~~~~~~v~t~~g~~~-~a~~vV~a 185 (381)
T TIGR03197 135 PQLCRALLAHAGIRLTLHFNTEITSLER--DGEGWQLLDANGEVI-AASVVVLA 185 (381)
T ss_pred HHHHHHHHhccCCCcEEEeCCEEEEEEE--cCCeEEEEeCCCCEE-EcCEEEEc
Confidence 44566665533 678999999999987 677899988888633 68999999
No 41
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=90.41 E-value=0.7 Score=41.97 Aligned_cols=49 Identities=18% Similarity=0.127 Sum_probs=39.6
Q ss_pred HHHHHHhcCCC-CeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 80 SICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 80 ~l~~~La~~l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
.|.+.|.+.+. ..++++++|.+|+. .+++|.+.+++|.. ..+|.||.|+
T Consensus 106 ~l~~~L~~~~~~~~v~~~~~v~~i~~--~~~~~~v~~~~g~~-~~ad~vVgAD 155 (414)
T TIGR03219 106 DFLDALLKHLPEGIASFGKRATQIEE--QAEEVQVLFTDGTE-YRCDLLIGAD 155 (414)
T ss_pred HHHHHHHHhCCCceEEcCCEEEEEEe--cCCcEEEEEcCCCE-EEeeEEEECC
Confidence 57777877663 56899999999987 67889999888864 4789999994
No 42
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=89.61 E-value=0.4 Score=45.48 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=42.1
Q ss_pred CCceEEeCCCchHHHHHHhcCCC--CeeEcCeeEEEEEeecC---CCCeEEEeCC-Cc-ccccccEEEec
Q 026682 68 MNKKYVGVPGMNSICKALCHQPG--VESKFGVGVGRFEWLED---KNLWSVSGLD-GQ-SLGQFNGVVAS 130 (235)
Q Consensus 68 ~~~~yvg~~GM~~l~~~La~~l~--~~i~~~~~V~~i~~~~~---~~~w~l~~~~-G~-~~~~~d~VVlA 130 (235)
+.+.|....-|..-.+..|+..+ ..|+++|+|.+|++..+ .++|.|++.+ |+ ....||+||+|
T Consensus 76 ~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~Vvva 145 (531)
T PF00743_consen 76 DYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVA 145 (531)
T ss_dssp CCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEc
Confidence 34556655555555555565444 46999999999987322 2469998764 43 23469999998
No 43
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=89.57 E-value=0.77 Score=42.39 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=45.9
Q ss_pred chHHHHHHhcCCCCeeEcCeeEEEEEeecCCC-CeEEEeCCCcccccccEEEecCCCCCccchhcccCCCC
Q 026682 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKN-LWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPP 147 (235)
Q Consensus 78 M~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~-~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~ll~~p~ 147 (235)
|.++++.+.+. +.+++++++|+.|++ .++ .+.+.+.+|+..-.++.||.+ .++-+...+++.+++.
T Consensus 156 t~~l~e~a~~~-g~~i~ln~eV~~i~~--~~dg~~~~~~~~g~~~~~ak~Vin~-AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 156 TRALAEEAQAN-GVELRLNTEVTGIEK--QSDGVFVLNTSNGEETLEAKFVINA-AGLYADPLAQMAGIPE 222 (429)
T ss_pred HHHHHHHHHHc-CCEEEecCeeeEEEE--eCCceEEEEecCCcEEEEeeEEEEC-CchhHHHHHHHhCCCc
Confidence 34555555554 789999999999997 566 466777788641367888887 4455666777777553
No 44
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=89.11 E-value=1.2 Score=40.19 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=36.2
Q ss_pred hHHHHHHhc---CCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 79 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 79 ~~l~~~La~---~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
..++++|.+ ..+.+++++++|.+++. .+++|.+.+.+|. ..+|.||+|
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~V~~~~g~--i~ad~vV~A 199 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDE--HANGVVVRTTQGE--YEARTLINC 199 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEe--cCCeEEEEECCCE--EEeCEEEEC
Confidence 445555543 24788999999999986 6677988887773 368999998
No 45
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=89.03 E-value=1.8 Score=37.60 Aligned_cols=48 Identities=25% Similarity=0.186 Sum_probs=34.4
Q ss_pred hHHHHHHhc---CCCCeeEcCeeEEEEEeecCCCCeE-EEeCCCcccccccEEEec
Q 026682 79 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNLWS-VSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 79 ~~l~~~La~---~l~~~i~~~~~V~~i~~~~~~~~w~-l~~~~G~~~~~~d~VVlA 130 (235)
..++..|++ ..+++++.++.|+.|+. ++++|. |.+++|. ..+|.||+|
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~--~~~~~~~v~~~~g~--~~a~~vV~a 188 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEI--RGEKVTAIVTPSGD--VQADQVVLA 188 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEe--eCCEEEEEEcCCCE--EECCEEEEc
Confidence 445555543 34689999999999986 566664 6666663 368999999
No 46
>PRK07236 hypothetical protein; Provisional
Probab=88.74 E-value=1.2 Score=40.10 Aligned_cols=52 Identities=21% Similarity=0.169 Sum_probs=42.1
Q ss_pred CchHHHHHHhcCCC-CeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 77 GMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 77 GM~~l~~~La~~l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
+...+.+.|.+.++ .+++++++|++|+. +++++.+..++|+.. .+|.||.||
T Consensus 98 ~~~~l~~~L~~~~~~~~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~ad~vIgAD 150 (386)
T PRK07236 98 SWNVLYRALRAAFPAERYHLGETLVGFEQ--DGDRVTARFADGRRE-TADLLVGAD 150 (386)
T ss_pred CHHHHHHHHHHhCCCcEEEcCCEEEEEEe--cCCeEEEEECCCCEE-EeCEEEECC
Confidence 45677788887664 57999999999987 677899999888653 789999985
No 47
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=86.58 E-value=2.1 Score=38.93 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=40.8
Q ss_pred CchHHHHHHhc---CCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccch
Q 026682 77 GMNSICKALCH---QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRF 139 (235)
Q Consensus 77 GM~~l~~~La~---~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~ 139 (235)
--+++.+.|.. .++++|+++++|.+|+ + ++|.+...++.....+|.||+|.-+.+.|++
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~---~-~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ---G-GTLRFETPDGQSTIEADAVVLALGGASWSQL 145 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEe---C-CcEEEEECCCceEEecCEEEEcCCCcccccc
Confidence 33456665554 3579999999999994 3 3588876544222379999999766666654
No 48
>PRK09126 hypothetical protein; Provisional
Probab=86.28 E-value=2 Score=38.45 Aligned_cols=48 Identities=25% Similarity=0.212 Sum_probs=36.5
Q ss_pred HHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
|.+.+.+..+++|+++++|++++. .++++.+.+++|+. ..+|.||.|+
T Consensus 116 l~~~~~~~~g~~i~~~~~v~~~~~--~~~~~~v~~~~g~~-~~a~~vI~Ad 163 (392)
T PRK09126 116 AYEAVSQQDGIELLTGTRVTAVRT--DDDGAQVTLANGRR-LTARLLVAAD 163 (392)
T ss_pred HHHHHhhCCCcEEEcCCeEEEEEE--cCCeEEEEEcCCCE-EEeCEEEEeC
Confidence 344444445688999999999986 66788888888864 3789999984
No 49
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=85.85 E-value=2.3 Score=38.06 Aligned_cols=48 Identities=25% Similarity=0.198 Sum_probs=36.2
Q ss_pred HHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
|.+.+.+..+.+++++++|+++.. .+++|.+++++|.. ..+|.||.|+
T Consensus 118 l~~~~~~~~g~~~~~~~~v~~i~~--~~~~~~v~~~~g~~-~~a~~vI~Ad 165 (395)
T PRK05732 118 LFALLDKAPGVTLHCPARVANVER--TQGSVRVTLDDGET-LTGRLLVAAD 165 (395)
T ss_pred HHHHHhcCCCcEEEcCCEEEEEEE--cCCeEEEEECCCCE-EEeCEEEEec
Confidence 444444434578999999999986 67889998888754 3789999993
No 50
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=85.63 E-value=2.1 Score=38.09 Aligned_cols=49 Identities=12% Similarity=0.086 Sum_probs=37.4
Q ss_pred hHHHHHHhcC----CCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 79 NSICKALCHQ----PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 79 ~~l~~~La~~----l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
..+.+.|.+. .+++++++++|++|+. ++++|.+..++|.. ..+|.||.|
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~--~~~~~~v~~~~g~~-~~ad~vV~A 157 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIR--NQDYVRVTLDNGQQ-LRAKLLIAA 157 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEE--cCCeEEEEECCCCE-EEeeEEEEe
Confidence 4556555542 2578999999999986 67789998887754 478999999
No 51
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=85.60 E-value=2.3 Score=38.43 Aligned_cols=48 Identities=17% Similarity=0.208 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 80 ~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
.|.+.+.+ .+++++++++|.+++. ++++|.|...+|+. ..+|.||.|+
T Consensus 117 ~L~~~~~~-~gv~v~~~~~v~~i~~--~~~~v~v~~~~g~~-~~a~~vVgAd 164 (405)
T PRK05714 117 ALLERLHD-SDIGLLANARLEQMRR--SGDDWLLTLADGRQ-LRAPLVVAAD 164 (405)
T ss_pred HHHHHHhc-CCCEEEcCCEEEEEEE--cCCeEEEEECCCCE-EEeCEEEEec
Confidence 33444443 4688999999999986 67789998888864 3789999994
No 52
>PRK06847 hypothetical protein; Provisional
Probab=85.29 E-value=4 Score=36.23 Aligned_cols=40 Identities=30% Similarity=0.492 Sum_probs=33.1
Q ss_pred CCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
.+++++++++|.+++. .++++.+...+|+. ..+|.||.|+
T Consensus 120 ~gv~v~~~~~v~~i~~--~~~~~~v~~~~g~~-~~ad~vI~Ad 159 (375)
T PRK06847 120 AGADVRLGTTVTAIEQ--DDDGVTVTFSDGTT-GRYDLVVGAD 159 (375)
T ss_pred hCCEEEeCCEEEEEEE--cCCEEEEEEcCCCE-EEcCEEEECc
Confidence 4678999999999986 67789998888864 3689999993
No 53
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=84.89 E-value=2 Score=39.82 Aligned_cols=48 Identities=21% Similarity=0.118 Sum_probs=35.0
Q ss_pred hHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCC
Q 026682 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDK 132 (235)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~ 132 (235)
..|.+++. ..|++|+.+++|+.|+. ++.|.|.+++|.. .+|.||+|.+
T Consensus 187 ~~L~~~a~-~~Gv~i~~~t~V~~i~~---~~~~~v~t~~g~v--~A~~VV~Atg 234 (460)
T TIGR03329 187 RGLRRVAL-ELGVEIHENTPMTGLEE---GQPAVVRTPDGQV--TADKVVLALN 234 (460)
T ss_pred HHHHHHHH-HcCCEEECCCeEEEEee---CCceEEEeCCcEE--ECCEEEEccc
Confidence 44443333 35789999999999974 4568888887753 6899999943
No 54
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=84.88 E-value=1.6 Score=42.42 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=37.9
Q ss_pred hHHHHHHhcCC--CCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 79 NSICKALCHQP--GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 79 ~~l~~~La~~l--~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
..++++|++.+ +++++++++|.+|+. .+++|.|.+++|.. ..+|.||+|
T Consensus 408 ~~l~~aL~~~a~~Gv~i~~~~~V~~i~~--~~~~~~v~t~~g~~-~~ad~VV~A 458 (662)
T PRK01747 408 AELCRALLALAGQQLTIHFGHEVARLER--EDDGWQLDFAGGTL-ASAPVVVLA 458 (662)
T ss_pred HHHHHHHHHhcccCcEEEeCCEeeEEEE--eCCEEEEEECCCcE-EECCEEEEC
Confidence 35666666544 478999999999987 67789998877753 358999998
No 55
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=84.55 E-value=2.1 Score=37.95 Aligned_cols=38 Identities=29% Similarity=0.263 Sum_probs=32.1
Q ss_pred CCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
.+++++.+++|++|+. .+++|.|.+++|. ..+|.||+|
T Consensus 162 ~gv~i~~~~~v~~i~~--~~~~~~v~~~~g~--~~a~~vV~A 199 (376)
T PRK11259 162 AGAELLFNEPVTAIEA--DGDGVTVTTADGT--YEAKKLVVS 199 (376)
T ss_pred CCCEEECCCEEEEEEe--eCCeEEEEeCCCE--EEeeEEEEe
Confidence 5788999999999987 6678999888874 368999999
No 56
>PRK06753 hypothetical protein; Provisional
Probab=84.48 E-value=2.9 Score=37.13 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=38.8
Q ss_pred hHHHHHHhcCCC-CeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 79 NSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 79 ~~l~~~La~~l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
..|-+.|.+.+. .+|+++++|++|+. +++++.+++++|+. ..+|.||.||
T Consensus 98 ~~l~~~L~~~~~~~~i~~~~~v~~i~~--~~~~v~v~~~~g~~-~~~~~vigad 148 (373)
T PRK06753 98 QTLIDIIKSYVKEDAIFTGKEVTKIEN--ETDKVTIHFADGES-EAFDLCIGAD 148 (373)
T ss_pred HHHHHHHHHhCCCceEEECCEEEEEEe--cCCcEEEEECCCCE-EecCEEEECC
Confidence 456666666543 56999999999986 77889999888865 3789999984
No 57
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=83.68 E-value=2.8 Score=37.63 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=35.9
Q ss_pred HHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 82 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 82 ~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
.+++.+..+++++++++|++++. ++++++++.++|.. ..+|.||.||
T Consensus 117 ~~~~~~~~~i~i~~~~~v~~~~~--~~~~~~v~~~~g~~-~~~~lvIgAD 163 (384)
T PRK08849 117 WQQFAQYPNLTLMCPEKLADLEF--SAEGNRVTLESGAE-IEAKWVIGAD 163 (384)
T ss_pred HHHHHhCCCeEEECCCceeEEEE--cCCeEEEEECCCCE-EEeeEEEEec
Confidence 34444433578999999999987 67789999888864 3689999984
No 58
>PRK07588 hypothetical protein; Provisional
Probab=83.52 E-value=2.6 Score=37.83 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=32.9
Q ss_pred CCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 90 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 90 ~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
+++|+++++|.+|+. ++++|++.+++|+. ..+|.||.||
T Consensus 116 ~v~i~~~~~v~~i~~--~~~~v~v~~~~g~~-~~~d~vIgAD 154 (391)
T PRK07588 116 QVETIFDDSIATIDE--HRDGVRVTFERGTP-RDFDLVIGAD 154 (391)
T ss_pred CeEEEeCCEEeEEEE--CCCeEEEEECCCCE-EEeCEEEECC
Confidence 478999999999987 77889999888865 3789999884
No 59
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=83.23 E-value=2.8 Score=37.23 Aligned_cols=39 Identities=26% Similarity=0.203 Sum_probs=31.7
Q ss_pred CCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
..+.+++.+++|.+|+. ++++|.|.+++|. ..+|.||+|
T Consensus 157 ~~g~~~~~~~~V~~i~~--~~~~~~v~~~~~~--i~a~~vV~a 195 (380)
T TIGR01377 157 AHGATVRDGTKVVEIEP--TELLVTVKTTKGS--YQANKLVVT 195 (380)
T ss_pred HcCCEEECCCeEEEEEe--cCCeEEEEeCCCE--EEeCEEEEe
Confidence 35788999999999986 6778888877664 268999998
No 60
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=82.82 E-value=2.8 Score=39.52 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=30.2
Q ss_pred CeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 91 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 91 ~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
++|+++++|++|++ ..++.|.|.+++|.. .+|.||++
T Consensus 232 v~i~~~t~V~~I~~-~~~~~~~V~T~~G~i--~A~~VVva 268 (497)
T PTZ00383 232 ISINLNTEVLNIER-SNDSLYKIHTNRGEI--RARFVVVS 268 (497)
T ss_pred EEEEeCCEEEEEEe-cCCCeEEEEECCCEE--EeCEEEEC
Confidence 67899999999987 226679998888853 68999998
No 61
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=82.53 E-value=3.7 Score=36.76 Aligned_cols=49 Identities=22% Similarity=0.368 Sum_probs=36.2
Q ss_pred HHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 80 ~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
.|.+.+.+..+++++++++|.+++. .+++|.|..++|+. ..+|.||.|+
T Consensus 117 ~L~~~~~~~~gv~i~~~~~v~~i~~--~~~~~~v~~~~g~~-~~a~~vI~Ad 165 (391)
T PRK08020 117 ALWQALEAHPNVTLRCPASLQALQR--DDDGWELTLADGEE-IQAKLVIGAD 165 (391)
T ss_pred HHHHHHHcCCCcEEEcCCeeEEEEE--cCCeEEEEECCCCE-EEeCEEEEeC
Confidence 3444444333678999999999986 67789998888754 3689999984
No 62
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=81.90 E-value=2.3 Score=29.17 Aligned_cols=39 Identities=26% Similarity=0.212 Sum_probs=26.9
Q ss_pred chHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCC
Q 026682 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG 118 (235)
Q Consensus 78 M~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G 118 (235)
+....+...+..++++++++.|..|+. ++++++|..+||
T Consensus 42 ~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~~~V~~~~g 80 (80)
T PF00070_consen 42 AAKILEEYLRKRGVEVHTNTKVKEIEK--DGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHTTEEEEESEEEEEEEE--ETTSEEEEEETS
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEE--eCCEEEEEEecC
Confidence 333333334345899999999999997 555677776665
No 63
>PRK09897 hypothetical protein; Provisional
Probab=81.49 E-value=3.2 Score=39.50 Aligned_cols=39 Identities=10% Similarity=-0.031 Sum_probs=30.5
Q ss_pred CeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 91 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 91 ~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
+.++.+++|+.|+. .+++|.|.+++|.....+|.||||.
T Consensus 124 V~v~~~~~V~~I~~--~~~g~~V~t~~gg~~i~aD~VVLAt 162 (534)
T PRK09897 124 VAVYESCQVTDLQI--TNAGVMLATNQDLPSETFDLAVIAT 162 (534)
T ss_pred EEEEECCEEEEEEE--eCCEEEEEECCCCeEEEcCEEEECC
Confidence 56788999999987 6788999876643224689999993
No 64
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=81.39 E-value=4.1 Score=36.83 Aligned_cols=48 Identities=15% Similarity=0.023 Sum_probs=36.1
Q ss_pred HHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
|.+.+.+..+++++++++|++++. +++++++..++|+. ..+|.||.||
T Consensus 117 L~~~~~~~~~v~v~~~~~v~~i~~--~~~~~~v~~~~g~~-~~a~lvIgAD 164 (405)
T PRK08850 117 LLEQVQKQDNVTLLMPARCQSIAV--GESEAWLTLDNGQA-LTAKLVVGAD 164 (405)
T ss_pred HHHHHhcCCCeEEEcCCeeEEEEe--eCCeEEEEECCCCE-EEeCEEEEeC
Confidence 444444433578999999999986 67788898888865 3789999994
No 65
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=81.21 E-value=4.4 Score=36.38 Aligned_cols=40 Identities=25% Similarity=0.215 Sum_probs=33.1
Q ss_pred CCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
.+++++++++|++++. ++++|.+...+|.. ..+|.||.|+
T Consensus 124 ~gv~v~~~~~v~~i~~--~~~~v~v~~~~g~~-~~ad~vI~Ad 163 (403)
T PRK07333 124 LGIDLREATSVTDFET--RDEGVTVTLSDGSV-LEARLLVAAD 163 (403)
T ss_pred CCCEEEcCCEEEEEEE--cCCEEEEEECCCCE-EEeCEEEEcC
Confidence 4688999999999986 67789998888764 3689999984
No 66
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=79.93 E-value=3.9 Score=38.18 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=33.2
Q ss_pred HHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeC---CCc-ccccccEEEec
Q 026682 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL---DGQ-SLGQFNGVVAS 130 (235)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~---~G~-~~~~~d~VVlA 130 (235)
|.++|.+.-+.++++++.|+.|++ ..++.|.|... +|+ ....++.|++-
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r-~~dg~W~v~~~~~~~~~~~~v~a~FVfvG 239 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKR-NGDGRWEVKVKDLKTGEKREVRAKFVFVG 239 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEE-CCCCCEEEEEEecCCCCeEEEECCEEEEC
Confidence 444444443688999999999998 23445999753 232 22368899997
No 67
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=79.89 E-value=5.5 Score=35.71 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=37.9
Q ss_pred cCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccchhc
Q 026682 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD 141 (235)
Q Consensus 87 ~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~ 141 (235)
+..+++++++++|.+++. +++++.+...+|+. ..+|.||++.-..|....++
T Consensus 194 ~~~gV~i~~~~~v~~i~~--~~~~~~v~~~~g~~-i~~D~vI~a~G~~p~~~l~~ 245 (377)
T PRK04965 194 TEMGVHLLLKSQLQGLEK--TDSGIRATLDSGRS-IEVDAVIAAAGLRPNTALAR 245 (377)
T ss_pred HhCCCEEEECCeEEEEEc--cCCEEEEEEcCCcE-EECCEEEECcCCCcchHHHH
Confidence 346789999999999986 56678888888865 37999999944344433333
No 68
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=79.78 E-value=4.3 Score=34.49 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=31.9
Q ss_pred CCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
..++++++ ++|.+|++ .++.|.+...+|.. ..||.||+|.
T Consensus 69 ~~gv~~~~-~~v~~v~~--~~~~~~v~~~~~~~-~~~d~liiAt 108 (300)
T TIGR01292 69 KFGAEIIY-EEVIKVDL--SDRPFKVKTGDGKE-YTAKAVIIAT 108 (300)
T ss_pred HcCCeEEE-EEEEEEEe--cCCeeEEEeCCCCE-EEeCEEEECC
Confidence 34678888 89999987 67789998877754 3799999993
No 69
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=79.51 E-value=4.7 Score=36.39 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=33.3
Q ss_pred HHHHHHhc---CCCCeeEcCeeEEEEEeecCCCCeE-EEeCCCcccccccEEEec
Q 026682 80 SICKALCH---QPGVESKFGVGVGRFEWLEDKNLWS-VSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 80 ~l~~~La~---~l~~~i~~~~~V~~i~~~~~~~~w~-l~~~~G~~~~~~d~VVlA 130 (235)
.+++.|++ ..|.+|+.+++|++|+. ++++|. +.+++|. ..+|.||+|
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~--~~~~~~~v~t~~~~--~~a~~VV~a 252 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLV--EGGRITGVQTGGGV--ITADAYVVA 252 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEe--cCCEEEEEEeCCcE--EeCCEEEEC
Confidence 44555543 34789999999999986 556664 6666553 268999999
No 70
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=79.50 E-value=7.2 Score=35.98 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=46.6
Q ss_pred hHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeE-EEeCCC-cccccccEEEecCCCCCccchhcccCCCCCCCCCcchH
Q 026682 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWS-VSGLDG-QSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPD 156 (235)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~-l~~~~G-~~~~~~d~VVlA~~~~pap~~~~ll~~p~~~~~~~~~~ 156 (235)
.+|.+++.+ +|.++..+++|.+++. .++++. +.+.+| +....+|+|||| .-+. +...
T Consensus 267 ~aL~~~~~~-~Gg~il~g~~V~~i~~--~~~~v~~V~t~~g~~~~l~AD~vVLA---aGaw---------------~S~g 325 (419)
T TIGR03378 267 EALKHRFEQ-LGGVMLPGDRVLRAEF--EGNRVTRIHTRNHRDIPLRADHFVLA---SGSF---------------FSNG 325 (419)
T ss_pred HHHHHHHHH-CCCEEEECcEEEEEEe--eCCeEEEEEecCCccceEECCEEEEc---cCCC---------------cCHH
Confidence 445555554 5788999999999986 566665 444554 222379999999 3221 1244
Q ss_pred HHHHhcCCCCcceEEEEE
Q 026682 157 LAVKLEEIPVNPCFALML 174 (235)
Q Consensus 157 l~~~l~~v~~~p~~~v~~ 174 (235)
+.+.+..| ++|++-+=+
T Consensus 326 L~a~l~~i-~Epif~L~v 342 (419)
T TIGR03378 326 LVAEFDKI-YEPIFGLDV 342 (419)
T ss_pred HHhhcCce-eeeccCCCc
Confidence 55566665 577766655
No 71
>PRK08013 oxidoreductase; Provisional
Probab=79.18 E-value=5.3 Score=36.09 Aligned_cols=48 Identities=15% Similarity=0.121 Sum_probs=35.7
Q ss_pred HHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
|.+.+.+.-+++++++++|.+|+. +++++.++..+|+. ..+|.||-||
T Consensus 117 L~~~~~~~~~v~i~~~~~v~~i~~--~~~~v~v~~~~g~~-i~a~lvVgAD 164 (400)
T PRK08013 117 LWQKAQQSSDITLLAPAELQQVAW--GENEAFLTLKDGSM-LTARLVVGAD 164 (400)
T ss_pred HHHHHhcCCCcEEEcCCeeEEEEe--cCCeEEEEEcCCCE-EEeeEEEEeC
Confidence 344443322578999999999986 67789998888865 3789999884
No 72
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=78.98 E-value=5.5 Score=35.29 Aligned_cols=50 Identities=18% Similarity=0.067 Sum_probs=37.0
Q ss_pred hHHHHHHhcC---CC-CeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 79 NSICKALCHQ---PG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 79 ~~l~~~La~~---l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
..+.+.|.+. .+ .+++++++|++|.. .+++|.+..++|+. ..+|.||.|+
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~--~~~~~~v~~~~g~~-~~~~~vi~ad 159 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPR--HSDHVELTLDDGQQ-LRARLLVGAD 159 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEe--cCCeeEEEECCCCE-EEeeEEEEeC
Confidence 4455544442 34 78999999999986 67789998888864 4789899883
No 73
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=78.85 E-value=4.5 Score=35.84 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=32.5
Q ss_pred hHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
..|.+++.+..+++++.+++|..|+. + .|.+.+|.. .+|.||+|
T Consensus 149 ~~l~~~~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~g~i--~a~~VV~A 192 (365)
T TIGR03364 149 PALAAYLAEQHGVEFHWNTAVTSVET---G---TVRTSRGDV--HADQVFVC 192 (365)
T ss_pred HHHHHHHHhcCCCEEEeCCeEEEEec---C---eEEeCCCcE--EeCEEEEC
Confidence 45666665444788999999999973 2 566667753 58999999
No 74
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=78.75 E-value=5.8 Score=35.59 Aligned_cols=40 Identities=23% Similarity=0.157 Sum_probs=33.0
Q ss_pred CCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
.+++++++++|++++. ++++|.++.++|+. ..+|.||.|+
T Consensus 126 ~gv~i~~~~~v~~i~~--~~~~v~v~~~~g~~-~~a~~vV~Ad 165 (392)
T PRK08773 126 AGVQLHCPARVVALEQ--DADRVRLRLDDGRR-LEAALAIAAD 165 (392)
T ss_pred CCCEEEcCCeEEEEEe--cCCeEEEEECCCCE-EEeCEEEEec
Confidence 4688999999999986 67789998877764 3689999983
No 75
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=78.41 E-value=5.2 Score=35.77 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=35.1
Q ss_pred hHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
+.|.+++.+.-++ .+++++|.+++. .+++|.++.++|+. ..+|.||.|+
T Consensus 115 ~~L~~~~~~~~~~-~~~~~~v~~i~~--~~~~~~v~~~~g~~-~~a~~vI~Ad 163 (388)
T PRK07494 115 RALEARVAELPNI-TRFGDEAESVRP--REDEVTVTLADGTT-LSARLVVGAD 163 (388)
T ss_pred HHHHHHHhcCCCc-EEECCeeEEEEE--cCCeEEEEECCCCE-EEEeEEEEec
Confidence 3444444442234 388999999986 77889998888754 3689999984
No 76
>PRK07190 hypothetical protein; Provisional
Probab=78.10 E-value=44 Score=31.33 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=33.1
Q ss_pred CCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
.++++|+++++|++|+. +++++.+...+|+. ..++.||.|+
T Consensus 121 ~~Gv~v~~~~~v~~l~~--~~~~v~v~~~~g~~-v~a~~vVgAD 161 (487)
T PRK07190 121 EAGAAVKRNTSVVNIEL--NQAGCLTTLSNGER-IQSRYVIGAD 161 (487)
T ss_pred HCCCEEEeCCEEEEEEE--cCCeeEEEECCCcE-EEeCEEEECC
Confidence 35789999999999987 67788887777753 3689999994
No 77
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=78.00 E-value=6.9 Score=36.70 Aligned_cols=51 Identities=20% Similarity=0.271 Sum_probs=33.7
Q ss_pred hHHHHHHhcC---CCCeeEcCeeEEEEEeecCCCCeEEEe---CCCc-ccccccEEEec
Q 026682 79 NSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSG---LDGQ-SLGQFNGVVAS 130 (235)
Q Consensus 79 ~~l~~~La~~---l~~~i~~~~~V~~i~~~~~~~~w~l~~---~~G~-~~~~~d~VVlA 130 (235)
..++++|++. .|++|+++++|++|++ .++++|.+.. .+|+ ....+|.||++
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~v~~~~~~~g~~~~i~A~~VV~A 235 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKR-QSDGSWTVTVKNTRTGGKRTLNTRFVFVG 235 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEE-cCCCeEEEEEeeccCCceEEEECCEEEEC
Confidence 3455555443 3789999999999986 1234698853 2342 12368999998
No 78
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=77.83 E-value=5.9 Score=35.70 Aligned_cols=50 Identities=26% Similarity=0.161 Sum_probs=34.6
Q ss_pred HHHHHHhcC----CCCeeEcCeeEEEEEeecCCCCeEEEeCC-C-cccccccEEEecC
Q 026682 80 SICKALCHQ----PGVESKFGVGVGRFEWLEDKNLWSVSGLD-G-QSLGQFNGVVASD 131 (235)
Q Consensus 80 ~l~~~La~~----l~~~i~~~~~V~~i~~~~~~~~w~l~~~~-G-~~~~~~d~VVlA~ 131 (235)
.+.+.|.+. -+++++++++|++++. +++++.++..+ + .....+|.||.||
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~--~~~~~~v~~~~~~~~~~i~adlvIgAD 177 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEY--QQDAATVTLEIEGKQQTLQSKLVVAAD 177 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEe--cCCeeEEEEccCCcceEEeeeEEEEeC
Confidence 455555332 2578999999999986 67788887653 2 2224789999994
No 79
>PRK08163 salicylate hydroxylase; Provisional
Probab=77.22 E-value=6.8 Score=35.08 Aligned_cols=39 Identities=21% Similarity=0.100 Sum_probs=32.0
Q ss_pred CCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 90 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 90 ~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
+++++++++|.+++. +++++.+...+|+. ..+|.||.|+
T Consensus 124 ~v~~~~~~~v~~i~~--~~~~v~v~~~~g~~-~~ad~vV~Ad 162 (396)
T PRK08163 124 LVEFRTSTHVVGIEQ--DGDGVTVFDQQGNR-WTGDALIGCD 162 (396)
T ss_pred CcEEEeCCEEEEEec--CCCceEEEEcCCCE-EecCEEEECC
Confidence 378999999999986 67789998888854 3689999994
No 80
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=77.07 E-value=5.8 Score=35.82 Aligned_cols=48 Identities=21% Similarity=0.267 Sum_probs=32.7
Q ss_pred HHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCc----ccccccEEEec
Q 026682 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ----SLGQFNGVVAS 130 (235)
Q Consensus 80 ~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~----~~~~~d~VVlA 130 (235)
+|.+.+. ..|++++.+++|.+|+. .+++|.+...++. ....+|.||+|
T Consensus 202 ~l~~~a~-~~G~~i~~~~~V~~i~~--~~~~~~v~~~~~~~~~~~~i~a~~vV~a 253 (410)
T PRK12409 202 GLAAACA-RLGVQFRYGQEVTSIKT--DGGGVVLTVQPSAEHPSRTLEFDGVVVC 253 (410)
T ss_pred HHHHHHH-hCCCEEEcCCEEEEEEE--eCCEEEEEEEcCCCCccceEecCEEEEC
Confidence 3444433 35789999999999986 6677877543321 12368999999
No 81
>PRK05868 hypothetical protein; Validated
Probab=77.04 E-value=7.5 Score=34.88 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=36.7
Q ss_pred HHHHHHhcC--CCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 80 SICKALCHQ--PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 80 ~l~~~La~~--l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
.|.+.|.+. .+.+++++++|++++. +++++.|+.++|+. ..+|.||-||
T Consensus 106 ~L~~~l~~~~~~~v~i~~~~~v~~i~~--~~~~v~v~~~dg~~-~~adlvIgAD 156 (372)
T PRK05868 106 DLVELLYGATQPSVEYLFDDSISTLQD--DGDSVRVTFERAAA-REFDLVIGAD 156 (372)
T ss_pred HHHHHHHHhccCCcEEEeCCEEEEEEe--cCCeEEEEECCCCe-EEeCEEEECC
Confidence 344444332 3578999999999986 67789999888865 3789999885
No 82
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=76.99 E-value=2 Score=28.78 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=19.0
Q ss_pred eecccCCCceec--CChHHHHHHHHH
Q 026682 14 MLFDHGAPFFTV--TNNDVLALVREW 37 (235)
Q Consensus 14 ~~fDhGAqyft~--~~~~f~~~v~~~ 37 (235)
..+|+|+.+|.. ..+.+.+++++|
T Consensus 43 ~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 43 YRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred EEEeeccEEEeCCCCchHHHHHHcCC
Confidence 689999999998 468888888764
No 83
>PRK06834 hypothetical protein; Provisional
Probab=75.57 E-value=7.7 Score=36.36 Aligned_cols=40 Identities=28% Similarity=0.186 Sum_probs=33.3
Q ss_pred CCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
.+++|+++++|++|+. +++++.++..+|+. ..+|.||.++
T Consensus 113 ~gv~i~~~~~v~~v~~--~~~~v~v~~~~g~~-i~a~~vVgAD 152 (488)
T PRK06834 113 LGVPIYRGREVTGFAQ--DDTGVDVELSDGRT-LRAQYLVGCD 152 (488)
T ss_pred CCCEEEcCCEEEEEEE--cCCeEEEEECCCCE-EEeCEEEEec
Confidence 4788999999999987 77789988877753 4789999995
No 84
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=75.13 E-value=8.2 Score=34.50 Aligned_cols=49 Identities=10% Similarity=-0.099 Sum_probs=35.3
Q ss_pred hHHHHHHhcC---C-CCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 79 NSICKALCHQ---P-GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 79 ~~l~~~La~~---l-~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
..|-+.|.+. . +++++++++|++|.. +++++.+..++| . ..+|.||.||
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~--~~~~v~v~~~~~-~-~~adlvIgAD 156 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVIS--HNDYSIIKFDDK-Q-IKCNLLIICD 156 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEE--cCCeEEEEEcCC-E-EeeCEEEEeC
Confidence 4454444432 2 367899999999986 677899988766 3 3689999994
No 85
>PRK07045 putative monooxygenase; Reviewed
Probab=74.20 E-value=9.4 Score=34.17 Aligned_cols=45 Identities=29% Similarity=0.296 Sum_probs=32.2
Q ss_pred HHhcCCCCeeEcCeeEEEEEeecCCCC--eEEEeCCCcccccccEEEecC
Q 026682 84 ALCHQPGVESKFGVGVGRFEWLEDKNL--WSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 84 ~La~~l~~~i~~~~~V~~i~~~~~~~~--w~l~~~~G~~~~~~d~VVlA~ 131 (235)
.+.+..+++++++++|+.|+. ++++ +.|+.++|+. ..+|.||.|+
T Consensus 115 ~~~~~~gv~i~~~~~v~~i~~--~~~~~~~~v~~~~g~~-~~~~~vIgAD 161 (388)
T PRK07045 115 KLDGLPNVRLRFETSIERIER--DADGTVTSVTLSDGER-VAPTVLVGAD 161 (388)
T ss_pred HHhcCCCeeEEeCCEEEEEEE--CCCCcEEEEEeCCCCE-EECCEEEECC
Confidence 333333578999999999986 4444 5788878864 3689999884
No 86
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=73.44 E-value=10 Score=34.52 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=37.0
Q ss_pred CCchHHHHHHhcC---CCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 76 PGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 76 ~GM~~l~~~La~~---l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
.....+.+.|.+. .+++++++++|..|.. .++.|.+.++ ++. ..+|.||+|.
T Consensus 102 ~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~--~~~~~~v~~~-~~~-i~ad~VIlAt 156 (400)
T TIGR00275 102 DSAADVLDALLNELKELGVEILTNSKVKSIKK--DDNGFGVETS-GGE-YEADKVILAT 156 (400)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEe--cCCeEEEEEC-CcE-EEcCEEEECC
Confidence 3345566555543 4688999999999986 6677888774 433 3689999993
No 87
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=73.20 E-value=8.7 Score=35.76 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=41.0
Q ss_pred eEEeCCCchHHHHHHhcC---CCCeeEcCeeEEEEEeecCCCC-eEEEeCCCcccccccEEEec
Q 026682 71 KYVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 71 ~yvg~~GM~~l~~~La~~---l~~~i~~~~~V~~i~~~~~~~~-w~l~~~~G~~~~~~d~VVlA 130 (235)
+=+|+...--+++.|-+. +|.+++++|+|..|.. .++. -.+...+|..+ .+|.||+|
T Consensus 165 rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~--~~~~~~~v~~~~g~~i-~~~~vvlA 225 (486)
T COG2509 165 RHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEI--EDNEVLGVKLTKGEEI-EADYVVLA 225 (486)
T ss_pred cccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe--cCCceEEEEccCCcEE-ecCEEEEc
Confidence 446666666677666553 5789999999999986 4332 34566777654 79999999
No 88
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=72.50 E-value=8.8 Score=36.26 Aligned_cols=49 Identities=29% Similarity=0.307 Sum_probs=35.3
Q ss_pred HHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeC--CCc-ccccccEEEecC
Q 026682 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQ-SLGQFNGVVASD 131 (235)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~--~G~-~~~~~d~VVlA~ 131 (235)
|.+.+.+..+++|+++++|++|+. +++++.++.. +|+ ....+|.||.||
T Consensus 119 L~~~~~~~~gv~v~~g~~v~~i~~--~~~~v~v~~~~~~G~~~~i~ad~vVgAD 170 (538)
T PRK06183 119 LRAGLARFPHVRVRFGHEVTALTQ--DDDGVTVTLTDADGQRETVRARYVVGCD 170 (538)
T ss_pred HHHHHHhCCCcEEEcCCEEEEEEE--cCCeEEEEEEcCCCCEEEEEEEEEEecC
Confidence 344444434688999999999997 7788888765 463 234789999984
No 89
>PRK06475 salicylate hydroxylase; Provisional
Probab=72.49 E-value=10 Score=34.23 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=32.9
Q ss_pred HHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeC--CCcccccccEEEecC
Q 026682 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASD 131 (235)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~--~G~~~~~~d~VVlA~ 131 (235)
|.+++.+..+++++++++|.+++. +++++.++.. +++....+|.||-||
T Consensus 113 L~~~~~~~~~i~v~~~~~v~~~~~--~~~~v~v~~~~~~~~~~~~adlvIgAD 163 (400)
T PRK06475 113 LLDACRNNPGIEIKLGAEMTSQRQ--TGNSITATIIRTNSVETVSAAYLIACD 163 (400)
T ss_pred HHHHHHhcCCcEEEECCEEEEEec--CCCceEEEEEeCCCCcEEecCEEEECC
Confidence 333343333578999999999986 6778887653 332224689999884
No 90
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=71.37 E-value=9.9 Score=35.82 Aligned_cols=41 Identities=15% Similarity=0.035 Sum_probs=33.2
Q ss_pred CCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
..+++++++++|.+|.+ .++.|.+...+|.. ..||.||+|.
T Consensus 278 ~~gv~i~~~~~V~~I~~--~~~~~~V~~~~g~~-i~a~~vViAt 318 (517)
T PRK15317 278 EYDVDIMNLQRASKLEP--AAGLIEVELANGAV-LKAKTVILAT 318 (517)
T ss_pred HCCCEEEcCCEEEEEEe--cCCeEEEEECCCCE-EEcCEEEECC
Confidence 35688999999999987 56789998877754 3699999993
No 91
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=71.27 E-value=9.6 Score=35.87 Aligned_cols=49 Identities=18% Similarity=0.326 Sum_probs=32.3
Q ss_pred HHHHHHhc---CCC-CeeEcCeeEEEEEeecCCC-CeEEEeC---CCcc-cccccEEEec
Q 026682 80 SICKALCH---QPG-VESKFGVGVGRFEWLEDKN-LWSVSGL---DGQS-LGQFNGVVAS 130 (235)
Q Consensus 80 ~l~~~La~---~l~-~~i~~~~~V~~i~~~~~~~-~w~l~~~---~G~~-~~~~d~VVlA 130 (235)
.++++|++ ..+ ++|+++++|++|+. .++ .|.+... +|+. ...++.||++
T Consensus 184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~--~~dg~~~v~~~~~~~G~~~~i~A~~VVva 241 (494)
T PRK05257 184 ALTRQLVGYLQKQGNFELQLGHEVRDIKR--NDDGSWTVTVKDLKTGEKRTVRAKFVFIG 241 (494)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCEEEEEEE--CCCCCEEEEEEEcCCCceEEEEcCEEEEC
Confidence 44444433 234 68999999999986 444 4987643 3531 1368999988
No 92
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=70.93 E-value=6.1 Score=35.31 Aligned_cols=53 Identities=23% Similarity=0.279 Sum_probs=37.6
Q ss_pred chHHHHHHhcCCCCeeEcCeeEEEEEeecCC--CCeEEEeC--CC-cccccccEEEec
Q 026682 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDK--NLWSVSGL--DG-QSLGQFNGVVAS 130 (235)
Q Consensus 78 M~~l~~~La~~l~~~i~~~~~V~~i~~~~~~--~~w~l~~~--~G-~~~~~~d~VVlA 130 (235)
.+.-++..+++++..++++++|++|++...+ ..|+|.+. +| +..-.++.|||+
T Consensus 97 f~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla 154 (341)
T PF13434_consen 97 FNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLA 154 (341)
T ss_dssp HHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE-
T ss_pred HHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEEC
Confidence 5677788888887669999999999973222 24999873 33 222368999998
No 93
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=70.50 E-value=12 Score=36.76 Aligned_cols=50 Identities=20% Similarity=0.126 Sum_probs=39.5
Q ss_pred hHHHHHHhcCCCC-eeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 79 NSICKALCHQPGV-ESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 79 ~~l~~~La~~l~~-~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
..|.+.|++.++. .++++++|++|+. .++++++...+|+.. .+|.||.|+
T Consensus 194 ~~L~~~L~~alg~~~i~~g~~V~~I~~--~~d~VtV~~~dG~ti-~aDlVVGAD 244 (668)
T PLN02927 194 MTLQQILARAVGEDVIRNESNVVDFED--SGDKVTVVLENGQRY-EGDLLVGAD 244 (668)
T ss_pred HHHHHHHHhhCCCCEEEcCCEEEEEEE--eCCEEEEEECCCCEE-EcCEEEECC
Confidence 4577888877763 3789999999986 678899988888643 689999984
No 94
>PRK06116 glutathione reductase; Validated
Probab=70.44 E-value=11 Score=34.64 Aligned_cols=41 Identities=10% Similarity=0.057 Sum_probs=31.7
Q ss_pred CCCCeeEcCeeEEEEEeecCCCC-eEEEeCCCcccccccEEEecC
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~-w~l~~~~G~~~~~~d~VVlA~ 131 (235)
..+++++++++|.+|+. ++++ +.+.+.+|+. ..+|.||++.
T Consensus 220 ~~GV~i~~~~~V~~i~~--~~~g~~~v~~~~g~~-i~~D~Vv~a~ 261 (450)
T PRK06116 220 KKGIRLHTNAVPKAVEK--NADGSLTLTLEDGET-LTVDCLIWAI 261 (450)
T ss_pred HCCcEEECCCEEEEEEE--cCCceEEEEEcCCcE-EEeCEEEEee
Confidence 35789999999999986 4444 7777777764 3799999983
No 95
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=70.31 E-value=11 Score=35.48 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=32.6
Q ss_pred CCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
.+++++++++|.+|.. .++.|.+...+|.. ..||.||+|.
T Consensus 280 ~gv~i~~~~~V~~I~~--~~~~~~v~~~~g~~-i~~d~lIlAt 319 (515)
T TIGR03140 280 YPIDLMENQRAKKIET--EDGLIVVTLESGEV-LKAKSVIVAT 319 (515)
T ss_pred hCCeEEcCCEEEEEEe--cCCeEEEEECCCCE-EEeCEEEECC
Confidence 4688999999999986 66678888877764 3799999993
No 96
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=68.88 E-value=9.1 Score=35.28 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=32.9
Q ss_pred HHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCC-c-ccccccEEEecC
Q 026682 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG-Q-SLGQFNGVVASD 131 (235)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G-~-~~~~~d~VVlA~ 131 (235)
+...+..+++++++++|.+|+. +++++.+...+| + ....+|.||++.
T Consensus 220 ~~~l~~~gV~i~~~~~V~~i~~--~~~~v~v~~~~gg~~~~i~~D~vi~a~ 268 (462)
T PRK06416 220 ERALKKRGIKIKTGAKAKKVEQ--TDDGVTVTLEDGGKEETLEADYVLVAV 268 (462)
T ss_pred HHHHHHcCCEEEeCCEEEEEEE--eCCEEEEEEEeCCeeEEEEeCEEEEee
Confidence 3333345789999999999986 556777766554 1 223699999993
No 97
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=68.32 E-value=17 Score=32.74 Aligned_cols=38 Identities=29% Similarity=0.322 Sum_probs=32.2
Q ss_pred CeeEcCeeEEEEEeecCCCCeEEEeC-CCcccccccEEEecC
Q 026682 91 VESKFGVGVGRFEWLEDKNLWSVSGL-DGQSLGQFNGVVASD 131 (235)
Q Consensus 91 ~~i~~~~~V~~i~~~~~~~~w~l~~~-~G~~~~~~d~VVlA~ 131 (235)
+++++++.|+.++. +++++.++.. +|+. ..+|.||-||
T Consensus 120 v~~~~~~~v~~~~~--~~~~v~v~l~~dG~~-~~a~llVgAD 158 (387)
T COG0654 120 VTLRFGAEVEAVEQ--DGDGVTVTLSFDGET-LDADLLVGAD 158 (387)
T ss_pred cEEEcCceEEEEEE--cCCceEEEEcCCCcE-EecCEEEECC
Confidence 78999999999997 7788888887 8874 4789999984
No 98
>PLN02507 glutathione reductase
Probab=68.30 E-value=12 Score=35.21 Aligned_cols=41 Identities=10% Similarity=-0.009 Sum_probs=32.3
Q ss_pred cCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 87 ~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
+..+++++++++|.+++. .+++..+...+|+. ..+|.||++
T Consensus 255 ~~~GI~i~~~~~V~~i~~--~~~~~~v~~~~g~~-i~~D~vl~a 295 (499)
T PLN02507 255 EGRGINLHPRTNLTQLTK--TEGGIKVITDHGEE-FVADVVLFA 295 (499)
T ss_pred HhCCCEEEeCCEEEEEEE--eCCeEEEEECCCcE-EEcCEEEEe
Confidence 345789999999999985 55667777777754 479999998
No 99
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=68.19 E-value=13 Score=31.35 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=34.7
Q ss_pred CCCchHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 75 VPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 75 ~~GM~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
...+.......++..+++++++++|..+.. .++++.+...++.....+|.||.|
T Consensus 90 r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~a~~vv~a 143 (295)
T TIGR02032 90 RDAFDEQLAERAQEAGAELRLGTTVLDVEI--HDDRVVVIVRGGEGTVTAKIVIGA 143 (295)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCcEEeeEEE--eCCEEEEEEcCccEEEEeCEEEEC
Confidence 333433333333346788999999999986 566666654443222368999998
No 100
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=68.02 E-value=12 Score=34.67 Aligned_cols=46 Identities=11% Similarity=0.007 Sum_probs=33.8
Q ss_pred HHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
+...+..+++++++++|.+++. .+++..+...+|+. ..+|.||++.
T Consensus 225 ~~~L~~~gV~i~~~~~v~~v~~--~~~~~~v~~~~g~~-l~~D~vl~a~ 270 (466)
T PRK07845 225 EEVFARRGMTVLKRSRAESVER--TGDGVVVTLTDGRT-VEGSHALMAV 270 (466)
T ss_pred HHHHHHCCcEEEcCCEEEEEEE--eCCEEEEEECCCcE-EEecEEEEee
Confidence 3333345789999999999985 55667777767764 3789999983
No 101
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=66.36 E-value=17 Score=32.37 Aligned_cols=47 Identities=21% Similarity=0.129 Sum_probs=34.1
Q ss_pred HHHHHHhcCCC-CeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 80 SICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 80 ~l~~~La~~l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
.|.+++.+ .+ ++++ ++.|.++.. .+++|.+.+.+|.. ..+|.||.|+
T Consensus 116 ~L~~~~~~-~~~v~~~-~~~v~~i~~--~~~~~~v~~~~g~~-~~a~~vI~ad 163 (388)
T PRK07608 116 ALWAALRF-QPNLTWF-PARAQGLEV--DPDAATLTLADGQV-LRADLVVGAD 163 (388)
T ss_pred HHHHHHHh-CCCcEEE-cceeEEEEe--cCCeEEEEECCCCE-EEeeEEEEeC
Confidence 34444443 34 7777 999999986 67789998888753 3689999983
No 102
>PRK06996 hypothetical protein; Provisional
Probab=65.42 E-value=17 Score=32.79 Aligned_cols=48 Identities=8% Similarity=-0.124 Sum_probs=34.8
Q ss_pred HHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCC--cccccccEEEecC
Q 026682 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG--QSLGQFNGVVASD 131 (235)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G--~~~~~~d~VVlA~ 131 (235)
|.+.+.+ .+.+++++++|..++. ++++|+++..+| +....+|.||-||
T Consensus 121 L~~~~~~-~g~~~~~~~~v~~~~~--~~~~v~v~~~~~~g~~~i~a~lvIgAD 170 (398)
T PRK06996 121 LARAVRG-TPVRWLTSTTAHAPAQ--DADGVTLALGTPQGARTLRARIAVQAE 170 (398)
T ss_pred HHHHHHh-CCCEEEcCCeeeeeee--cCCeEEEEECCCCcceEEeeeEEEECC
Confidence 4444433 4678999999999986 778899987654 2234789999985
No 103
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=65.08 E-value=10 Score=35.12 Aligned_cols=48 Identities=25% Similarity=0.399 Sum_probs=34.6
Q ss_pred CeeEcCeeEEEEEeecCCCCeEEEeCCCccc-ccccEEEecCCCCCccc
Q 026682 91 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSL-GQFNGVVASDKNVVSPR 138 (235)
Q Consensus 91 ~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~-~~~d~VVlA~~~~pap~ 138 (235)
.+|+++++|..+.+..+++.|+|++++|... ..+|.||+|.-..-.|-
T Consensus 99 ~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~ 147 (443)
T COG2072 99 FQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPY 147 (443)
T ss_pred eEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCC
Confidence 5788999999988744556899999887542 24999999943333333
No 104
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=64.89 E-value=15 Score=33.76 Aligned_cols=52 Identities=13% Similarity=0.078 Sum_probs=36.5
Q ss_pred HHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCc
Q 026682 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVS 136 (235)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pa 136 (235)
+.+.|.+ .++++++++.|.+++. .++++.+...+|+. ..+|.||++.-..|.
T Consensus 222 l~~~l~~-~gI~v~~~~~v~~i~~--~~~~~~v~~~~g~~-i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 222 LSYHLRD-SGVTIRHNEEVEKVEG--GDDGVIVHLKSGKK-IKADCLLYANGRTGN 273 (461)
T ss_pred HHHHHHH-cCCEEEECCEEEEEEE--eCCeEEEEECCCCE-EEeCEEEEeecCCcc
Confidence 3344433 4788999999999986 55678887777754 379999998433333
No 105
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=64.79 E-value=15 Score=33.58 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=30.7
Q ss_pred CCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
..+++++++++|.+|+. +++++.+..++|+ ..+|.||++.
T Consensus 211 ~~gV~v~~~~~v~~i~~--~~~~v~v~~~~g~--i~~D~vl~a~ 250 (441)
T PRK08010 211 DQGVDIILNAHVERISH--HENQVQVHSEHAQ--LAVDALLIAS 250 (441)
T ss_pred hCCCEEEeCCEEEEEEE--cCCEEEEEEcCCe--EEeCEEEEee
Confidence 35789999999999986 5556777766664 2689999983
No 106
>PRK06184 hypothetical protein; Provisional
Probab=64.73 E-value=17 Score=33.91 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=34.0
Q ss_pred HHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEe---CCCcccccccEEEecC
Q 026682 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSG---LDGQSLGQFNGVVASD 131 (235)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~---~~G~~~~~~d~VVlA~ 131 (235)
|.+++.+ .+++|+++++|.+|+. +++++.+.. ++++. ..+|.||.|+
T Consensus 115 L~~~l~~-~gv~i~~~~~v~~i~~--~~~~v~v~~~~~~~~~~-i~a~~vVgAD 164 (502)
T PRK06184 115 LRERLAE-LGHRVEFGCELVGFEQ--DADGVTARVAGPAGEET-VRARYLVGAD 164 (502)
T ss_pred HHHHHHH-CCCEEEeCcEEEEEEE--cCCcEEEEEEeCCCeEE-EEeCEEEECC
Confidence 4445544 4788999999999986 677887765 34433 4789999993
No 107
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=64.09 E-value=17 Score=33.49 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=33.2
Q ss_pred HHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
+.|. ..+++++++++|.+++. .+++..+...+|+. ..+|.||++.
T Consensus 215 ~~l~-~~gV~i~~~~~v~~i~~--~~~~~~v~~~~g~~-i~~D~viva~ 259 (446)
T TIGR01424 215 RNME-GRGIRIHPQTSLTSITK--TDDGLKVTLSHGEE-IVADVVLFAT 259 (446)
T ss_pred HHHH-HCCCEEEeCCEEEEEEE--cCCeEEEEEcCCcE-eecCEEEEee
Confidence 3343 35789999999999985 55667777666754 3799999983
No 108
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=63.21 E-value=15 Score=33.44 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=31.4
Q ss_pred HHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCC-Cccc-ccccEEEec
Q 026682 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD-GQSL-GQFNGVVAS 130 (235)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~-G~~~-~~~d~VVlA 130 (235)
+.+.+..+++++++++|.+|.. .++.+.+.... ++.+ ..||.||+|
T Consensus 51 ~~~~~~~gv~~~~~~~V~~id~--~~~~v~~~~~~~~~~~~~~yd~lIiA 98 (427)
T TIGR03385 51 EVFIKKRGIDVKTNHEVIEVND--ERQTVVVRNNKTNETYEESYDYLILS 98 (427)
T ss_pred HHHHHhcCCeEEecCEEEEEEC--CCCEEEEEECCCCCEEecCCCEEEEC
Confidence 4454556778889999999986 56666665432 3332 139999998
No 109
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=62.69 E-value=17 Score=33.46 Aligned_cols=41 Identities=15% Similarity=0.033 Sum_probs=31.3
Q ss_pred CCCeeEcCeeEEEEEeecCCCCeEEEeCCCc-ccccccEEEecC
Q 026682 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ-SLGQFNGVVASD 131 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~-~~~~~d~VVlA~ 131 (235)
.+++++++++|.+|+. +++++.+...+|+ ....+|.||++.
T Consensus 224 ~gi~i~~~~~v~~i~~--~~~~v~v~~~~g~~~~i~~D~vi~a~ 265 (461)
T TIGR01350 224 KGVKILTNTKVTAVEK--NDDQVVYENKGGETETLTGEKVLVAV 265 (461)
T ss_pred cCCEEEeCCEEEEEEE--eCCEEEEEEeCCcEEEEEeCEEEEec
Confidence 4788999999999986 5667777766663 224799999984
No 110
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=62.11 E-value=21 Score=32.75 Aligned_cols=51 Identities=16% Similarity=0.057 Sum_probs=35.7
Q ss_pred HHHHHHhcCC--CCeeEcCeeEEEEEee-----cCCCCeEEEeCCCcccccccEEEecC
Q 026682 80 SICKALCHQP--GVESKFGVGVGRFEWL-----EDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 80 ~l~~~La~~l--~~~i~~~~~V~~i~~~-----~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
.|.+.+.+.. +++++++++|.+++.. .++++++++..+|+. ..+|.||.||
T Consensus 122 ~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~-i~a~llVgAD 179 (437)
T TIGR01989 122 SLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQV-LYTKLLIGAD 179 (437)
T ss_pred HHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCE-EEeeEEEEec
Confidence 3455555433 3789999999999741 124678888888865 4789999984
No 111
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=61.26 E-value=27 Score=31.87 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=35.9
Q ss_pred CCchHHHHHHhc---CCCCeeEcCeeEEEEEeecCC-CCeEE--EeCCCcccccccEEEecCCC
Q 026682 76 PGMNSICKALCH---QPGVESKFGVGVGRFEWLEDK-NLWSV--SGLDGQSLGQFNGVVASDKN 133 (235)
Q Consensus 76 ~GM~~l~~~La~---~l~~~i~~~~~V~~i~~~~~~-~~w~l--~~~~G~~~~~~d~VVlA~~~ 133 (235)
++...+.+.|.+ ..+++|+++++|++|.. ++ +++.+ ...++.....++.||||.-+
T Consensus 120 ~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~--~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 120 GGGKALTNALYSSAERLGVEIRYGIAVDRIPP--EAFDGAHDGPLTTVGTHRITTQALVLAAGG 181 (432)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEe--cCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence 456667777644 45789999999999985 42 45543 22222222357999999443
No 112
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=60.67 E-value=20 Score=32.84 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=35.3
Q ss_pred CCCchHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 75 VPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 75 ~~GM~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
+.-+.......++..+++++.+++|.+|.. +++++.....+|..+ .+|.||.|+
T Consensus 107 R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~--~~g~v~~v~~~g~~i-~A~~VI~A~ 160 (428)
T PRK10157 107 RSKFDAWLMEQAEEAGAQLITGIRVDNLVQ--RDGKVVGVEADGDVI-EAKTVILAD 160 (428)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEE--eCCEEEEEEcCCcEE-ECCEEEEEe
Confidence 344444434444456889999999999986 455554333455443 689999994
No 113
>PRK14727 putative mercuric reductase; Provisional
Probab=60.50 E-value=20 Score=33.31 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=30.9
Q ss_pred CCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
..+++++++++|..++. .++++.+...+|+ ..+|.||++.
T Consensus 240 ~~GV~i~~~~~V~~i~~--~~~~~~v~~~~g~--i~aD~VlvA~ 279 (479)
T PRK14727 240 KEGIEVLNNTQASLVEH--DDNGFVLTTGHGE--LRAEKLLIST 279 (479)
T ss_pred hCCCEEEcCcEEEEEEE--eCCEEEEEEcCCe--EEeCEEEEcc
Confidence 35788999999999986 5567777766664 2689999983
No 114
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=60.26 E-value=21 Score=32.21 Aligned_cols=40 Identities=15% Similarity=0.043 Sum_probs=31.0
Q ss_pred CCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
..+++++++++|.+++. ++.+.+...+|+. ..+|.||++.
T Consensus 198 ~~GV~i~~~~~V~~i~~---~~~~~v~l~~g~~-i~aD~Vv~a~ 237 (396)
T PRK09754 198 QAGVRILLNNAIEHVVD---GEKVELTLQSGET-LQADVVIYGI 237 (396)
T ss_pred HCCCEEEeCCeeEEEEc---CCEEEEEECCCCE-EECCEEEECC
Confidence 45789999999999973 4456777777765 3789999984
No 115
>PRK14694 putative mercuric reductase; Provisional
Probab=59.68 E-value=26 Score=32.45 Aligned_cols=47 Identities=6% Similarity=0.115 Sum_probs=32.7
Q ss_pred hcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCc
Q 026682 86 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVS 136 (235)
Q Consensus 86 a~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pa 136 (235)
.+..+++++++++|.+|+. +++.+.+.+++|. ..+|.||++.-..|.
T Consensus 228 l~~~GI~v~~~~~v~~i~~--~~~~~~v~~~~~~--i~~D~vi~a~G~~pn 274 (468)
T PRK14694 228 FRREGIEVLKQTQASEVDY--NGREFILETNAGT--LRAEQLLVATGRTPN 274 (468)
T ss_pred HHhCCCEEEeCCEEEEEEE--cCCEEEEEECCCE--EEeCEEEEccCCCCC
Confidence 3345789999999999986 5555666655553 379999998433333
No 116
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=59.16 E-value=15 Score=32.86 Aligned_cols=38 Identities=13% Similarity=0.021 Sum_probs=28.1
Q ss_pred CeeEcCeeEEEEEeecCC-CCeEEEeCC---Cc-ccccccEEEec
Q 026682 91 VESKFGVGVGRFEWLEDK-NLWSVSGLD---GQ-SLGQFNGVVAS 130 (235)
Q Consensus 91 ~~i~~~~~V~~i~~~~~~-~~w~l~~~~---G~-~~~~~d~VVlA 130 (235)
.+|+.+++|++++. .+ ++|+|+..+ |+ ....+|.||+|
T Consensus 294 ~~l~~~~~v~~~~~--~~~~~~~l~~~~~~~~~~~~~~~D~VilA 336 (341)
T PF13434_consen 294 LRLLPNTEVTSAEQ--DGDGGVRLTLRHRQTGEEETLEVDAVILA 336 (341)
T ss_dssp SEEETTEEEEEEEE--ES-SSEEEEEEETTT--EEEEEESEEEE-
T ss_pred eEEeCCCEEEEEEE--CCCCEEEEEEEECCCCCeEEEecCEEEEc
Confidence 67899999999997 44 589998754 22 33479999998
No 117
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=58.43 E-value=22 Score=32.65 Aligned_cols=46 Identities=9% Similarity=0.064 Sum_probs=32.7
Q ss_pred HHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCC-Ccc-cccccEEEec
Q 026682 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD-GQS-LGQFNGVVAS 130 (235)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~-G~~-~~~~d~VVlA 130 (235)
+.+.+..+++++++++|.+|.. +++.+.+...+ ++. ...||.||+|
T Consensus 65 ~~~~~~~~i~v~~~~~V~~Id~--~~~~v~~~~~~~~~~~~~~yd~lviA 112 (438)
T PRK13512 65 EKFYDRKQITVKTYHEVIAIND--ERQTVTVLNRKTNEQFEESYDKLILS 112 (438)
T ss_pred HHHHHhCCCEEEeCCEEEEEEC--CCCEEEEEECCCCcEEeeecCEEEEC
Confidence 4454545778999999999986 66777776543 222 2368999999
No 118
>PRK06185 hypothetical protein; Provisional
Probab=56.14 E-value=30 Score=31.07 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=31.6
Q ss_pred HHHHHhcCCCCeeEcCeeEEEEEeecCCCCe---EEEeCCCcccccccEEEecC
Q 026682 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLW---SVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w---~l~~~~G~~~~~~d~VVlA~ 131 (235)
|.+++.+..+++++++++|.++.. +++++ .+...+|+....+|.||.|+
T Consensus 114 L~~~~~~~~~v~i~~~~~v~~~~~--~~~~v~~v~~~~~~g~~~i~a~~vI~Ad 165 (407)
T PRK06185 114 LAEEASAYPNFTLRMGAEVTGLIE--EGGRVTGVRARTPDGPGEIRADLVVGAD 165 (407)
T ss_pred HHHHHhhCCCcEEEeCCEEEEEEE--eCCEEEEEEEEcCCCcEEEEeCEEEECC
Confidence 333443333578999999999986 45544 34444554234789999994
No 119
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=56.08 E-value=29 Score=32.82 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeC--CCcccccccEEEecC
Q 026682 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASD 131 (235)
Q Consensus 80 ~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~--~G~~~~~~d~VVlA~ 131 (235)
.|.+.+.+..+++|+++++|.+++. ++++|.+... +|.....+|.||.|+
T Consensus 130 ~L~~~~~~~~~v~v~~~~~v~~i~~--~~~~v~v~~~~~~g~~~i~ad~vVgAD 181 (547)
T PRK08132 130 YLVERAQALPNIDLRWKNKVTGLEQ--HDDGVTLTVETPDGPYTLEADWVIACD 181 (547)
T ss_pred HHHHHHHhCCCcEEEeCCEEEEEEE--cCCEEEEEEECCCCcEEEEeCEEEECC
Confidence 3455555433578999999999986 6777876543 443224789999994
No 120
>PRK06175 L-aspartate oxidase; Provisional
Probab=55.87 E-value=28 Score=32.04 Aligned_cols=52 Identities=6% Similarity=-0.132 Sum_probs=31.9
Q ss_pred hHHHHHHhcCCCCeeEcCeeEEEEEeecCCCC---eEEEeCCCcc-cccccEEEecCCC
Q 026682 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQS-LGQFNGVVASDKN 133 (235)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~---w~l~~~~G~~-~~~~d~VVlA~~~ 133 (235)
..|.+.+.+..+++|+++++|..|.. ++++ +.+.. +|+. ...++.||||.-+
T Consensus 132 ~~L~~~~~~~~gV~i~~~t~v~~Li~--~~~~v~Gv~~~~-~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 132 KILLKKVKKRKNITIIENCYLVDIIE--NDNTCIGAICLK-DNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHhcCCCEEEECcEeeeeEe--cCCEEEEEEEEE-CCcEEEEEcCeEEEccCc
Confidence 34444444444689999999999874 4443 22222 3432 2367999999443
No 121
>PRK06126 hypothetical protein; Provisional
Probab=55.44 E-value=27 Score=32.98 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=29.7
Q ss_pred CCeeEcCeeEEEEEeecCCCCeEEEe---CCCc-ccccccEEEecC
Q 026682 90 GVESKFGVGVGRFEWLEDKNLWSVSG---LDGQ-SLGQFNGVVASD 131 (235)
Q Consensus 90 ~~~i~~~~~V~~i~~~~~~~~w~l~~---~~G~-~~~~~d~VVlA~ 131 (235)
+++|+++++|++++. +++++.+.. .+|+ ....+|.||.|+
T Consensus 141 ~v~i~~~~~v~~i~~--~~~~v~v~~~~~~~g~~~~i~ad~vVgAD 184 (545)
T PRK06126 141 GVTLRYGHRLTDFEQ--DADGVTATVEDLDGGESLTIRADYLVGCD 184 (545)
T ss_pred CceEEeccEEEEEEE--CCCeEEEEEEECCCCcEEEEEEEEEEecC
Confidence 578999999999986 667777654 3354 224689999984
No 122
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=55.39 E-value=1.4e+02 Score=28.01 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=30.7
Q ss_pred CCCCeeEcCeeEEEEEeecCCCCeEEEeCC---Cc-ccccccEEEec
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLD---GQ-SLGQFNGVVAS 130 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~---G~-~~~~~d~VVlA 130 (235)
..|.+++.+++|++|.. ++++|.+...+ |+ ....++.||.|
T Consensus 167 ~~Ga~i~~~~~V~~i~~--~~~~~~v~~~~~~~g~~~~i~a~~VVnA 211 (508)
T PRK12266 167 ERGAEILTRTRVVSARR--ENGLWHVTLEDTATGKRYTVRARALVNA 211 (508)
T ss_pred HcCCEEEcCcEEEEEEE--eCCEEEEEEEEcCCCCEEEEEcCEEEEC
Confidence 35788999999999986 66678876543 43 22368999999
No 123
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=55.14 E-value=11 Score=35.23 Aligned_cols=66 Identities=20% Similarity=0.174 Sum_probs=45.8
Q ss_pred EeCCCchHHHHHHhcCC---CCeeEcCeeEEEEEeecCCC-CeEEEeCCCcccccccEEEecCCCCCccchhccc
Q 026682 73 VGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKN-LWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVT 143 (235)
Q Consensus 73 vg~~GM~~l~~~La~~l---~~~i~~~~~V~~i~~~~~~~-~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~ll 143 (235)
--.+||.++++++++.+ |.+|.+...|.+|.- +++ -.-|...+|+.. .. ..|++ |..|-....+|+
T Consensus 258 Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Ill--d~gka~GV~L~dG~ev-~s-k~VvS-NAt~~~Tf~kLl 327 (561)
T KOG4254|consen 258 YPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILL--DSGKAVGVRLADGTEV-RS-KIVVS-NATPWDTFEKLL 327 (561)
T ss_pred CCCCChhHHHHHHHHHHHhccceeeehhhhhheec--cCCeEEEEEecCCcEE-Ee-eeeec-CCchHHHHHHhC
Confidence 34799999999999854 678999999999974 332 234566788753 23 55553 445655566776
No 124
>PRK07538 hypothetical protein; Provisional
Probab=54.26 E-value=33 Score=31.06 Aligned_cols=49 Identities=20% Similarity=0.121 Sum_probs=31.6
Q ss_pred HHHHHhcCCC-CeeEcCeeEEEEEeecCCCCeEEEeCCC---c-ccccccEEEecC
Q 026682 81 ICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDG---Q-SLGQFNGVVASD 131 (235)
Q Consensus 81 l~~~La~~l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~G---~-~~~~~d~VVlA~ 131 (235)
|.+.+.+.++ .+|+++++|++++. +++++.+...++ + ....+|.||-||
T Consensus 108 L~~~~~~~~g~~~i~~~~~v~~~~~--~~~~~~~~~~~~~~g~~~~~~adlvIgAD 161 (413)
T PRK07538 108 LLDAVRERLGPDAVRTGHRVVGFEQ--DADVTVVFLGDRAGGDLVSVRGDVLIGAD 161 (413)
T ss_pred HHHHHHhhcCCcEEEcCCEEEEEEe--cCCceEEEEeccCCCccceEEeeEEEECC
Confidence 4444444445 46999999999986 556665554332 1 224689888884
No 125
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=53.78 E-value=30 Score=31.96 Aligned_cols=46 Identities=17% Similarity=0.029 Sum_probs=30.9
Q ss_pred HHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCc-ccccccEEEecCC
Q 026682 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ-SLGQFNGVVASDK 132 (235)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~-~~~~~d~VVlA~~ 132 (235)
+.|. ..+++++++++|.+++. ++....+.. +|+ ....+|.||+|.-
T Consensus 219 ~~L~-~~GI~i~~~~~V~~i~~--~~~~v~~~~-~g~~~~i~~D~vivA~G 265 (458)
T PRK06912 219 EKLE-NDGVKIFTGAALKGLNS--YKKQALFEY-EGSIQEVNAEFVLVSVG 265 (458)
T ss_pred HHHH-HCCCEEEECCEEEEEEE--cCCEEEEEE-CCceEEEEeCEEEEecC
Confidence 3444 35789999999999985 445555543 332 2247999999843
No 126
>PRK08244 hypothetical protein; Provisional
Probab=53.45 E-value=28 Score=32.41 Aligned_cols=52 Identities=23% Similarity=0.096 Sum_probs=35.5
Q ss_pred chHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeC--CCcccccccEEEecC
Q 026682 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASD 131 (235)
Q Consensus 78 M~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~--~G~~~~~~d~VVlA~ 131 (235)
+..+....++..+++++++++|.+++. +++++.+... +|.....+|.||.|+
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~--~~~~v~v~~~~~~g~~~i~a~~vVgAD 155 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQ--DGDGVEVVVRGPDGLRTLTSSYVVGAD 155 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEE--cCCeEEEEEEeCCccEEEEeCEEEECC
Confidence 344444444445788999999999986 6677776543 453224789999994
No 127
>PRK07846 mycothione reductase; Reviewed
Probab=53.17 E-value=34 Score=31.60 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=32.4
Q ss_pred CCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCc
Q 026682 90 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVS 136 (235)
Q Consensus 90 ~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pa 136 (235)
+++++++++|.+++. .+++..+...+|+. ..+|.||++.-..|.
T Consensus 220 ~v~i~~~~~v~~i~~--~~~~v~v~~~~g~~-i~~D~vl~a~G~~pn 263 (451)
T PRK07846 220 RWDVRLGRNVVGVSQ--DGSGVTLRLDDGST-VEADVLLVATGRVPN 263 (451)
T ss_pred CeEEEeCCEEEEEEE--cCCEEEEEECCCcE-eecCEEEEEECCccC
Confidence 578999999999986 55567777667754 379999999433343
No 128
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=52.70 E-value=31 Score=31.52 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=32.1
Q ss_pred HHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 80 ~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
...+...+..+++++++++|.+|+. +++...+.. +|+. ..+|.||+|
T Consensus 202 ~~~~~~l~~~GI~i~~~~~V~~i~~--~~~~v~v~~-~g~~-i~~D~viva 248 (438)
T PRK07251 202 ALAKQYMEEDGITFLLNAHTTEVKN--DGDQVLVVT-EDET-YRFDALLYA 248 (438)
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEe--cCCEEEEEE-CCeE-EEcCEEEEe
Confidence 3333333445789999999999985 555566654 3443 379999998
No 129
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=52.56 E-value=40 Score=30.29 Aligned_cols=39 Identities=21% Similarity=0.085 Sum_probs=28.5
Q ss_pred CCCeeEcCeeEEEEEeecCCCCe-EEEeCCCcccccccEEEec
Q 026682 89 PGVESKFGVGVGRFEWLEDKNLW-SVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w-~l~~~~G~~~~~~d~VVlA 130 (235)
.|+++..+++|.+|+. .+++++ .+.+++|.. .++.||++
T Consensus 196 ~Gv~~~~~~~V~~i~~-~~~~~~~~v~t~~g~i--~a~~vVva 235 (407)
T TIGR01373 196 RGVDIIQNCEVTGFIR-RDGGRVIGVETTRGFI--GAKKVGVA 235 (407)
T ss_pred CCCEEEeCCEEEEEEE-cCCCcEEEEEeCCceE--ECCEEEEC
Confidence 5788999999999975 133454 477777743 57888887
No 130
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=52.03 E-value=31 Score=31.80 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=32.9
Q ss_pred hHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeC--CCcccccccEEEecC
Q 026682 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASD 131 (235)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~--~G~~~~~~d~VVlA~ 131 (235)
....+...+..+++++++++|.+++. ++++..+... ++.....+|.||++.
T Consensus 210 ~~~l~~~l~~~gV~i~~~~~V~~i~~--~~~~~~v~~~~~~~~~~i~~D~ViiA~ 262 (463)
T TIGR02053 210 SAAVEEALAEEGIEVVTSAQVKAVSV--RGGGKIITVEKPGGQGEVEADELLVAT 262 (463)
T ss_pred HHHHHHHHHHcCCEEEcCcEEEEEEE--cCCEEEEEEEeCCCceEEEeCEEEEeE
Confidence 33333444445789999999999986 5555555543 222224799999993
No 131
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=51.62 E-value=38 Score=31.63 Aligned_cols=46 Identities=22% Similarity=0.154 Sum_probs=33.3
Q ss_pred HHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcc-cccccEEEec
Q 026682 82 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQS-LGQFNGVVAS 130 (235)
Q Consensus 82 ~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~-~~~~d~VVlA 130 (235)
.+.|.+ -++++++++.|..++. .+++..+..++|.. ...+|.|++|
T Consensus 221 ~~~l~~-~gv~i~~~~~v~~~~~--~~~~v~v~~~~g~~~~~~ad~vLvA 267 (454)
T COG1249 221 TKQLEK-GGVKILLNTKVTAVEK--KDDGVLVTLEDGEGGTIEADAVLVA 267 (454)
T ss_pred HHHHHh-CCeEEEccceEEEEEe--cCCeEEEEEecCCCCEEEeeEEEEc
Confidence 344444 4688999999999986 55557777777642 2368999999
No 132
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=51.53 E-value=39 Score=33.73 Aligned_cols=59 Identities=10% Similarity=-0.038 Sum_probs=39.0
Q ss_pred hHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccchh
Q 026682 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFR 140 (235)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~ 140 (235)
..+.+...+..++++++++.|.+|.. ++..-.+...+|+. ..+|.||++.-..|....+
T Consensus 185 ~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~-i~~D~Vi~a~G~~Pn~~la 243 (785)
T TIGR02374 185 GRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSS-LEADLIVMAAGIRPNDELA 243 (785)
T ss_pred HHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCE-EEcCEEEECCCCCcCcHHH
Confidence 33444444456899999999999974 43334566677865 3799999995444544433
No 133
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=51.48 E-value=38 Score=31.26 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=32.3
Q ss_pred CCCCeeEcCeeEEEEEeecCCCC-eEEEeCCCcccccccEEEecCCCCCc
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVS 136 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~-w~l~~~~G~~~~~~d~VVlA~~~~pa 136 (235)
..+++++++++|.+++. ++++ ..+...+|+....+|.||++.--.|.
T Consensus 219 ~~gI~i~~~~~v~~i~~--~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 219 KEGINVHKLSKPVKVEK--TVEGKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred HcCCEEEcCCEEEEEEE--eCCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 35789999999999985 3333 56666666333479999998433343
No 134
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=51.17 E-value=34 Score=31.64 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=31.9
Q ss_pred CCCCeeEcCeeEEEEEeecCCCCeEEEeC--CCc-ccccccEEEecCCCCCc
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQ-SLGQFNGVVASDKNVVS 136 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~--~G~-~~~~~d~VVlA~~~~pa 136 (235)
..+++++++++|.+++. .+++..+... +|. ....+|.||++.-..|.
T Consensus 225 ~~gV~i~~~~~v~~i~~--~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 225 KLGVKILTGTKVESIDD--NGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred HCCCEEEECCEEEEEEE--eCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence 35789999999999985 5555655443 553 22479999998433333
No 135
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=51.01 E-value=49 Score=30.57 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=30.9
Q ss_pred CCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 90 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 90 ~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
++++++++.|.+++. ++++..+...+|+. ..+|.||++.
T Consensus 223 gI~i~~~~~V~~i~~--~~~~v~v~~~~g~~-i~~D~vl~a~ 261 (452)
T TIGR03452 223 KWDIRLGRNVTAVEQ--DGDGVTLTLDDGST-VTADVLLVAT 261 (452)
T ss_pred CCEEEeCCEEEEEEE--cCCeEEEEEcCCCE-EEcCEEEEee
Confidence 578999999999986 55667777767754 4799999994
No 136
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=50.91 E-value=25 Score=32.03 Aligned_cols=52 Identities=13% Similarity=0.060 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCC
Q 026682 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVV 135 (235)
Q Consensus 80 ~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~p 135 (235)
...+..++..+++++++++|.+|.. +++.+.+..+++. ..+|.||++.-..|
T Consensus 195 ~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~~--i~~d~vi~a~G~~p 246 (444)
T PRK09564 195 DVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKGE--YEADVVIVATGVKP 246 (444)
T ss_pred HHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCCE--EEcCEEEECcCCCc
Confidence 3333334446789999999999974 4444455554443 37899999833333
No 137
>PRK13748 putative mercuric reductase; Provisional
Probab=50.83 E-value=35 Score=32.27 Aligned_cols=44 Identities=7% Similarity=0.055 Sum_probs=31.8
Q ss_pred CCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCC
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVV 135 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~p 135 (235)
..+++++++++|..|+. +++.+.+..++|. ..+|.||++.-..|
T Consensus 322 ~~gI~i~~~~~v~~i~~--~~~~~~v~~~~~~--i~~D~vi~a~G~~p 365 (561)
T PRK13748 322 AEGIEVLEHTQASQVAH--VDGEFVLTTGHGE--LRADKLLVATGRAP 365 (561)
T ss_pred HCCCEEEcCCEEEEEEe--cCCEEEEEecCCe--EEeCEEEEccCCCc
Confidence 35788999999999985 5566777665553 37899999843333
No 138
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=50.78 E-value=25 Score=35.15 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=30.1
Q ss_pred cCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 87 ~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
+..+++++++++|..|.+ . ...|.+.+|..+ .||.||+|
T Consensus 65 ~~~gv~~~~g~~V~~Id~--~--~k~V~~~~g~~~-~yD~LVlA 103 (785)
T TIGR02374 65 EKHGITLYTGETVIQIDT--D--QKQVITDAGRTL-SYDKLILA 103 (785)
T ss_pred HHCCCEEEcCCeEEEEEC--C--CCEEEECCCcEe-eCCEEEEC
Confidence 335788999999999975 3 356777777643 79999999
No 139
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=50.57 E-value=20 Score=33.35 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=38.1
Q ss_pred EeCCCchHHHHHHhcCCC--CeeEcCeeEEEEEeecCC-CCeEEEeCCCc---ccccccEEEec
Q 026682 73 VGVPGMNSICKALCHQPG--VESKFGVGVGRFEWLEDK-NLWSVSGLDGQ---SLGQFNGVVAS 130 (235)
Q Consensus 73 vg~~GM~~l~~~La~~l~--~~i~~~~~V~~i~~~~~~-~~w~l~~~~G~---~~~~~d~VVlA 130 (235)
....-|-...+..|+..+ ..|++++.|..+.. .+ +.|++.+.++. ....||+||++
T Consensus 87 p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~--~~~gkW~V~~~~~~~~~~~~ifd~VvVc 148 (448)
T KOG1399|consen 87 PSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDS--IDKGKWRVTTKDNGTQIEEEIFDAVVVC 148 (448)
T ss_pred CCHHHHHHHHHHHHHhcChhhheEecccEEEEee--ccCCceeEEEecCCcceeEEEeeEEEEc
Confidence 333344444555555554 46999999999986 55 68999876542 23479999998
No 140
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=50.28 E-value=33 Score=31.31 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=29.1
Q ss_pred CCCeeEcCeeEEEEEeecCCCCeEEEeC-CCccc-ccccEEEec
Q 026682 89 PGVESKFGVGVGRFEWLEDKNLWSVSGL-DGQSL-GQFNGVVAS 130 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~-~G~~~-~~~d~VVlA 130 (235)
.++++++++.|.+|.. +++.+.+... +|..+ ..||.||+|
T Consensus 69 ~gv~~~~~~~V~~id~--~~~~v~~~~~~~~~~~~~~yd~lviA 110 (444)
T PRK09564 69 SGIDVKTEHEVVKVDA--KNKTITVKNLKTGSIFNDTYDKLMIA 110 (444)
T ss_pred CCCeEEecCEEEEEEC--CCCEEEEEECCCCCEEEecCCEEEEC
Confidence 4678889999999986 6667777643 24332 239999998
No 141
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=48.99 E-value=38 Score=30.88 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=32.4
Q ss_pred HHHHHHhc---CCCCeeEcCeeEEEEEeecCCC----CeEEEeCCCcc-cccccEEEecCC
Q 026682 80 SICKALCH---QPGVESKFGVGVGRFEWLEDKN----LWSVSGLDGQS-LGQFNGVVASDK 132 (235)
Q Consensus 80 ~l~~~La~---~l~~~i~~~~~V~~i~~~~~~~----~w~l~~~~G~~-~~~~d~VVlA~~ 132 (235)
.+++.|.+ ..+++++++++|.+|.. +++ ++.+...+|+. ...++.||+|.-
T Consensus 131 ~l~~~l~~~~~~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtG 189 (439)
T TIGR01813 131 EIVQKLYKKAKKEGIDTRLNSKVEDLIQ--DDQGTVVGVVVKGKGKGIYIKAAKAVVLATG 189 (439)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEeeEeEE--CCCCcEEEEEEEeCCCeEEEEecceEEEecC
Confidence 34444433 35789999999999986 433 34454444532 235799999943
No 142
>PRK06370 mercuric reductase; Validated
Probab=48.27 E-value=41 Score=31.03 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=30.5
Q ss_pred HHhcCCCCeeEcCeeEEEEEeecCCCCeEEEe--CCCcccccccEEEecC
Q 026682 84 ALCHQPGVESKFGVGVGRFEWLEDKNLWSVSG--LDGQSLGQFNGVVASD 131 (235)
Q Consensus 84 ~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~--~~G~~~~~~d~VVlA~ 131 (235)
..++..+++++++++|.+|+. .+++..+.. .++.....+|.||++.
T Consensus 220 ~~l~~~GV~i~~~~~V~~i~~--~~~~~~v~~~~~~~~~~i~~D~Vi~A~ 267 (463)
T PRK06370 220 EILEREGIDVRLNAECIRVER--DGDGIAVGLDCNGGAPEITGSHILVAV 267 (463)
T ss_pred HHHHhCCCEEEeCCEEEEEEE--cCCEEEEEEEeCCCceEEEeCEEEECc
Confidence 333446789999999999986 455554433 2332224799999993
No 143
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=47.15 E-value=33 Score=30.63 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=29.2
Q ss_pred HHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 84 ALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 84 ~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
.+++..+++++++++|.+|.. ++ ..+.. +|.. ..||.||+|
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~--~~--~~v~~-~~~~-~~yd~LVlA 106 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDA--EA--QVVKS-QGNQ-WQYDKLVLA 106 (377)
T ss_pred HHHHhCCCEEECCCEEEEEEC--CC--CEEEE-CCeE-EeCCEEEEC
Confidence 455556788999999999975 33 35554 3433 379999998
No 144
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=47.11 E-value=48 Score=29.47 Aligned_cols=38 Identities=24% Similarity=0.015 Sum_probs=28.1
Q ss_pred CCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 90 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 90 ~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
+++++ .++|..+.. ..++.|.+.+++|.. ..++.||.|
T Consensus 99 gv~~~-~~~v~~i~~-~~~~~~~v~~~~g~~-~~a~~VI~A 136 (388)
T TIGR01790 99 GVLWL-ERKAIHAEA-DGVALSTVYCAGGQR-IQARLVIDA 136 (388)
T ss_pred CcEEE-ccEEEEEEe-cCCceeEEEeCCCCE-EEeCEEEEC
Confidence 56664 668888876 126789998888754 368999999
No 145
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=46.95 E-value=34 Score=30.23 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=32.5
Q ss_pred chHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 78 M~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
+....+..++..+++++++++|..+.. + .+..++|+. ..+|.||++
T Consensus 193 ~~~~~~~~l~~~gV~v~~~~~v~~i~~---~---~v~~~~g~~-i~~D~vi~a 238 (364)
T TIGR03169 193 VRRLVLRLLARRGIEVHEGAPVTRGPD---G---ALILADGRT-LPADAILWA 238 (364)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEcC---C---eEEeCCCCE-EecCEEEEc
Confidence 444444555556899999999998862 2 455567754 379999999
No 146
>PRK10015 oxidoreductase; Provisional
Probab=46.59 E-value=45 Score=30.62 Aligned_cols=43 Identities=21% Similarity=0.123 Sum_probs=29.5
Q ss_pred hcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 86 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 86 a~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
++..+++++.+++|+.|.. +++++.....++.. ..+|.||+|+
T Consensus 118 a~~~Gv~i~~~~~V~~i~~--~~~~v~~v~~~~~~-i~A~~VI~Ad 160 (429)
T PRK10015 118 AEQAGAQFIPGVRVDALVR--EGNKVTGVQAGDDI-LEANVVILAD 160 (429)
T ss_pred HHHcCCEEECCcEEEEEEE--eCCEEEEEEeCCeE-EECCEEEEcc
Confidence 3346789999999999986 55566533223322 3689999984
No 147
>PTZ00052 thioredoxin reductase; Provisional
Probab=46.20 E-value=49 Score=31.08 Aligned_cols=46 Identities=20% Similarity=0.039 Sum_probs=32.8
Q ss_pred CCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCc
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVS 136 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pa 136 (235)
..++++++++.|.+++. .++...+...+|+.+ .+|.||++.-..|.
T Consensus 234 ~~GV~i~~~~~v~~v~~--~~~~~~v~~~~g~~i-~~D~vl~a~G~~pn 279 (499)
T PTZ00052 234 EQGTLFLEGVVPINIEK--MDDKIKVLFSDGTTE-LFDTVLYATGRKPD 279 (499)
T ss_pred HcCCEEEcCCeEEEEEE--cCCeEEEEECCCCEE-EcCEEEEeeCCCCC
Confidence 35789999999999985 445566666677643 79999998433343
No 148
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=46.13 E-value=41 Score=29.68 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=28.2
Q ss_pred HHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 84 ALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 84 ~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
.+++..+++++.+ +|.+|.. +++ +|.+++|+. ..||.||+|
T Consensus 62 ~~~~~~gv~~~~~-~v~~id~--~~~--~V~~~~g~~-~~yD~LviA 102 (364)
T TIGR03169 62 RLARQAGARFVIA-EATGIDP--DRR--KVLLANRPP-LSYDVLSLD 102 (364)
T ss_pred HHHHhcCCEEEEE-EEEEEec--ccC--EEEECCCCc-ccccEEEEc
Confidence 3444456777664 8999986 444 566667755 379999998
No 149
>PLN02463 lycopene beta cyclase
Probab=45.68 E-value=59 Score=30.19 Aligned_cols=39 Identities=21% Similarity=0.096 Sum_probs=30.3
Q ss_pred CCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
.+++++ .++|.+|+. .++++.|.+++|.. ..+|.||.|+
T Consensus 127 ~GV~~~-~~~V~~I~~--~~~~~~V~~~dG~~-i~A~lVI~Ad 165 (447)
T PLN02463 127 NGVQFH-QAKVKKVVH--EESKSLVVCDDGVK-IQASLVLDAT 165 (447)
T ss_pred cCCEEE-eeEEEEEEE--cCCeEEEEECCCCE-EEcCEEEECc
Confidence 366665 579999987 67789999888854 3689999994
No 150
>PRK11445 putative oxidoreductase; Provisional
Probab=45.49 E-value=40 Score=29.83 Aligned_cols=41 Identities=17% Similarity=0.038 Sum_probs=31.4
Q ss_pred CCCeeEcCeeEEEEEeecCCCCeEEEe-CCCcc-cccccEEEecC
Q 026682 89 PGVESKFGVGVGRFEWLEDKNLWSVSG-LDGQS-LGQFNGVVASD 131 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~-~~G~~-~~~~d~VVlA~ 131 (235)
.+++++++++|..++. .+++|.+.. ++|+. ...+|.||.|+
T Consensus 111 ~gv~v~~~~~v~~i~~--~~~~~~v~~~~~g~~~~i~a~~vV~Ad 153 (351)
T PRK11445 111 ASVEVYHNSLCRKIWR--EDDGYHVIFRADGWEQHITARYLVGAD 153 (351)
T ss_pred cCCEEEcCCEEEEEEE--cCCEEEEEEecCCcEEEEEeCEEEECC
Confidence 3578999999999986 677899875 45641 24689999983
No 151
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=44.85 E-value=45 Score=28.40 Aligned_cols=51 Identities=12% Similarity=-0.006 Sum_probs=30.3
Q ss_pred CCeeEcCeeEEEEEeecCCCC---eEEEeCCCc---ccccccEEEecCCCCCccchhccc
Q 026682 90 GVESKFGVGVGRFEWLEDKNL---WSVSGLDGQ---SLGQFNGVVASDKNVVSPRFRDVT 143 (235)
Q Consensus 90 ~~~i~~~~~V~~i~~~~~~~~---w~l~~~~G~---~~~~~d~VVlA~~~~pap~~~~ll 143 (235)
+.+|+.+++|.+|....++++ +++...++. ....++.|||+ .-+-.+++||
T Consensus 207 n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIla---AGai~Tp~LL 263 (296)
T PF00732_consen 207 NLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILA---AGAIGTPRLL 263 (296)
T ss_dssp TEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE----SHHHHHHHHH
T ss_pred CccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEec---cCCCCChhhh
Confidence 578999999999965112222 334444554 23357899999 5444444444
No 152
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=43.65 E-value=52 Score=30.83 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=30.9
Q ss_pred CCCCeeEcCeeEEEEEeecCCCCeEEEeCCC--c-ccccccEEEec
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDG--Q-SLGQFNGVVAS 130 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G--~-~~~~~d~VVlA 130 (235)
..|.+++.+++|.+|.. +++.|.+...++ + ....++.||.|
T Consensus 167 ~~Ga~i~~~~~V~~i~~--~~~~~~v~~~~~~g~~~~i~a~~VVnA 210 (502)
T PRK13369 167 ERGATILTRTRCVSARR--EGGLWRVETRDADGETRTVRARALVNA 210 (502)
T ss_pred HCCCEEecCcEEEEEEE--cCCEEEEEEEeCCCCEEEEEecEEEEC
Confidence 45789999999999987 667788876543 2 12368999998
No 153
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=42.83 E-value=58 Score=29.56 Aligned_cols=43 Identities=12% Similarity=0.014 Sum_probs=29.7
Q ss_pred HHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
+..++..++++++++.|.+|.. + +.. +...+|+. ..+|.||++
T Consensus 186 ~~~l~~~gV~v~~~~~v~~i~~--~-~~~-v~~~~g~~-i~~D~vi~a 228 (427)
T TIGR03385 186 EEELKKHEINLRLNEEVDSIEG--E-ERV-KVFTSGGV-YQADMVILA 228 (427)
T ss_pred HHHHHHcCCEEEeCCEEEEEec--C-CCE-EEEcCCCE-EEeCEEEEC
Confidence 3334445789999999999974 3 333 34456654 379999998
No 154
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=42.48 E-value=52 Score=30.56 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=29.2
Q ss_pred CCCeeEcCeeEEEEEeecCCCCeEEEeCC--Cc-ccccccEEEecC
Q 026682 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLD--GQ-SLGQFNGVVASD 131 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~--G~-~~~~~d~VVlA~ 131 (235)
.+++++++++|.+|+. ++++..+...+ |+ ....+|.||++.
T Consensus 237 ~gi~i~~~~~v~~i~~--~~~~v~v~~~~~~g~~~~i~~D~vl~a~ 280 (475)
T PRK06327 237 QGLDIHLGVKIGEIKT--GGKGVSVAYTDADGEAQTLEVDKLIVSI 280 (475)
T ss_pred cCcEEEeCcEEEEEEE--cCCEEEEEEEeCCCceeEEEcCEEEEcc
Confidence 4789999999999986 55556555433 43 224799999983
No 155
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=41.16 E-value=62 Score=31.02 Aligned_cols=45 Identities=16% Similarity=0.034 Sum_probs=29.0
Q ss_pred CCCCeeEcCeeEEEEEeecCCCCe---EEEeCCCcccccc-cEEEecCCCC
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNLW---SVSGLDGQSLGQF-NGVVASDKNV 134 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w---~l~~~~G~~~~~~-d~VVlA~~~~ 134 (235)
..+++|+++++|++|.. +++.+ .+...++.....+ +.||||.-+.
T Consensus 229 ~~Gv~i~~~t~v~~l~~--~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~ 277 (581)
T PRK06134 229 DLGVRIWESAPARELLR--EDGRVAGAVVETPGGLQEIRARKGVVLAAGGF 277 (581)
T ss_pred hCCCEEEcCCEEEEEEE--eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCc
Confidence 35789999999999985 44443 3333344322356 8899994443
No 156
>PF04839 PSRP-3_Ycf65: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); InterPro: IPR006924 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This small acidic protein is found in 30S ribosomal subunit of cyanobacteria and plant plastids. In plants it has been named plastid-specific ribosomal protein 3 (PSRP-3), and in cyanobacteria it is named Ycf65. Plastid-specific ribosomal proteins may mediate the effects of nuclear factors on plastid translation. The acidic PSRPs are thought to contribute to protein-protein interactions in the 30S subunit, and are not thought to bind RNA [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome, 0009536 plastid; PDB: 2KT9_A.
Probab=40.99 E-value=32 Score=21.70 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=17.3
Q ss_pred ceecCChHHHHHHHHHHhCCccc
Q 026682 22 FFTVTNNDVLALVREWESGGLVA 44 (235)
Q Consensus 22 yft~~~~~f~~~v~~~~~~g~v~ 44 (235)
||+|+.++...+-.+|....+|.
T Consensus 5 fFWPr~DAWe~lk~eLe~K~WIs 27 (49)
T PF04839_consen 5 FFWPREDAWEQLKNELESKPWIS 27 (49)
T ss_dssp EEETTS-HHHHHHHHHHHSTTS-
T ss_pred ccCCCCcHHHHHHHHHhcCCCCC
Confidence 79999999988888887765543
No 157
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=40.61 E-value=64 Score=30.29 Aligned_cols=43 Identities=9% Similarity=-0.061 Sum_probs=29.7
Q ss_pred CCCeeEcCeeEEEEEeecCCCC---eEEEeCCCc-ccccccEEEecCCC
Q 026682 89 PGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQ-SLGQFNGVVASDKN 133 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~---w~l~~~~G~-~~~~~d~VVlA~~~ 133 (235)
.+++++++++|..|.. ++++ +.+...+|+ ....++.||+|.-+
T Consensus 203 ~gv~i~~~t~v~~l~~--~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG 249 (506)
T PRK06481 203 RKIPLFVNADVTKITE--KDGKVTGVKVKINGKETKTISSKAVVVTTGG 249 (506)
T ss_pred cCCeEEeCCeeEEEEe--cCCEEEEEEEEeCCCeEEEEecCeEEEeCCC
Confidence 5788999999999985 4443 555544443 22468999999544
No 158
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=39.93 E-value=67 Score=28.31 Aligned_cols=47 Identities=26% Similarity=0.237 Sum_probs=33.7
Q ss_pred HHHHHHhcC---CC-CeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 80 SICKALCHQ---PG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 80 ~l~~~La~~---l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
.+++.|++. ++ ..+..++.|..++. ..+.|.+.+.+|.. .+|.||+|
T Consensus 157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~--~~~~~~v~t~~g~i--~a~~vv~a 207 (387)
T COG0665 157 LLTRALAAAAEELGVVIIEGGTPVTSLER--DGRVVGVETDGGTI--EADKVVLA 207 (387)
T ss_pred HHHHHHHHHHHhcCCeEEEccceEEEEEe--cCcEEEEEeCCccE--EeCEEEEc
Confidence 445555442 35 56777999999985 22578999888873 68999999
No 159
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=38.93 E-value=69 Score=30.64 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=33.1
Q ss_pred hHHHHHHhc---CCCCeeEcCeeEEEEEeecCCCC---eEEEeCCCccccccc-EEEecCCCCC
Q 026682 79 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQSLGQFN-GVVASDKNVV 135 (235)
Q Consensus 79 ~~l~~~La~---~l~~~i~~~~~V~~i~~~~~~~~---w~l~~~~G~~~~~~d-~VVlA~~~~p 135 (235)
..|.+.|.+ ..+++|++++.|.+|.. +++. ..+...++.....++ .||+|.-+.+
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~--~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLT--EGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEe--eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 345554533 45789999999999986 4453 334333343223454 7999854444
No 160
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=38.79 E-value=93 Score=31.51 Aligned_cols=60 Identities=10% Similarity=-0.065 Sum_probs=38.2
Q ss_pred hHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccch
Q 026682 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRF 139 (235)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~ 139 (235)
..+.+...+..++++++++.|.+|.....+..-.+...+|+. ..+|.||++.-..|....
T Consensus 190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~-i~~D~Vv~A~G~rPn~~L 249 (847)
T PRK14989 190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSE-LEVDFIVFSTGIRPQDKL 249 (847)
T ss_pred HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCE-EEcCEEEECCCcccCchH
Confidence 334444445578999999999999741012234566678865 379999999443444433
No 161
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=38.69 E-value=1.8e+02 Score=27.33 Aligned_cols=41 Identities=12% Similarity=-0.031 Sum_probs=27.7
Q ss_pred CCCCeeEcCeeEEEEEeecCCCCe-EEEe---CCCc-ccccccEEEec
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNLW-SVSG---LDGQ-SLGQFNGVVAS 130 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w-~l~~---~~G~-~~~~~d~VVlA 130 (235)
..|.+|+.+++|++|.+ .++++ .+.. .+|+ ....++.||.|
T Consensus 140 ~~Ga~i~~~t~V~~i~~--~~~~v~gv~v~~~~~g~~~~i~a~~VVnA 185 (516)
T TIGR03377 140 EHGARIFTYTKVTGLIR--EGGRVTGVKVEDHKTGEEERIEAQVVINA 185 (516)
T ss_pred HcCCEEEcCcEEEEEEE--ECCEEEEEEEEEcCCCcEEEEEcCEEEEC
Confidence 35789999999999986 45543 2332 2342 12368999998
No 162
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=38.59 E-value=68 Score=29.99 Aligned_cols=50 Identities=14% Similarity=-0.010 Sum_probs=32.2
Q ss_pred hcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCc--ccccccEEEecCCCCCcc
Q 026682 86 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ--SLGQFNGVVASDKNVVSP 137 (235)
Q Consensus 86 a~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~--~~~~~d~VVlA~~~~pap 137 (235)
.+..++++++++.+.++.. .+++..+...+|+ ....+|.||++.-..|..
T Consensus 230 L~~~gV~i~~~~~v~~v~~--~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 230 MEEHGVKFKRQFVPIKVEQ--IEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred HHHcCCEEEeCceEEEEEE--cCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 3445789999999999975 4445555544442 224799999984333433
No 163
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=38.34 E-value=81 Score=29.56 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=32.0
Q ss_pred CCCCeeEcCeeEEEEEeecCCCC-eEEEeCCCcccccccEEEecCCCCCcc
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVSP 137 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~-w~l~~~~G~~~~~~d~VVlA~~~~pap 137 (235)
..++++++++.|.+|+. .+++ -.+...+|+. ..+|.||++.-..|..
T Consensus 243 ~~GI~i~~~~~v~~i~~--~~~~~~~v~~~~g~~-i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 243 ANGINIMTNENPAKVTL--NADGSKHVTFESGKT-LDVDVVMMAIGRVPRT 290 (486)
T ss_pred HcCCEEEcCCEEEEEEE--cCCceEEEEEcCCCE-EEcCEEEEeeCCCcCc
Confidence 35789999999999985 3333 4555556654 3789999984434443
No 164
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=38.21 E-value=65 Score=29.38 Aligned_cols=41 Identities=22% Similarity=0.027 Sum_probs=29.5
Q ss_pred HHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
+...+..+++++++++|.++.. +. +..++|+. ..+|.||++
T Consensus 235 ~~~L~~~gV~v~~~~~v~~v~~----~~--v~~~~g~~-i~~d~vi~~ 275 (424)
T PTZ00318 235 QRRLRRLGVDIRTKTAVKEVLD----KE--VVLKDGEV-IPTGLVVWS 275 (424)
T ss_pred HHHHHHCCCEEEeCCeEEEEeC----CE--EEECCCCE-EEccEEEEc
Confidence 3333456899999999999963 23 44567765 378999998
No 165
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=37.37 E-value=60 Score=29.25 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=27.7
Q ss_pred CCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
.++++++++.|..|.+ .+ -.+..++|+. ..||.||+|
T Consensus 71 ~~i~~~~g~~V~~id~--~~--~~v~~~~g~~-~~yd~LViA 107 (396)
T PRK09754 71 NNVHLHSGVTIKTLGR--DT--RELVLTNGES-WHWDQLFIA 107 (396)
T ss_pred CCCEEEcCCEEEEEEC--CC--CEEEECCCCE-EEcCEEEEc
Confidence 4678999999999975 33 3455566754 379999998
No 166
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=36.92 E-value=30 Score=19.62 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=15.9
Q ss_pred CCceecCChHHHHHHHHHH
Q 026682 20 APFFTVTNNDVLALVREWE 38 (235)
Q Consensus 20 Aqyft~~~~~f~~~v~~~~ 38 (235)
..|+.+....|+++|++|-
T Consensus 5 p~vi~~d~~~Fr~lVQ~LT 23 (31)
T PF05678_consen 5 PTVIHTDPSNFRALVQRLT 23 (31)
T ss_pred CEEEEeCHHHHHHHHHHhH
Confidence 5677878889999999984
No 167
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=36.90 E-value=87 Score=28.92 Aligned_cols=53 Identities=19% Similarity=0.083 Sum_probs=33.4
Q ss_pred CCCchHHHHHHhc---CCCCeeEcCeeEEEEEeecCCCCeEE-EeCCCc-ccccccEEEec
Q 026682 75 VPGMNSICKALCH---QPGVESKFGVGVGRFEWLEDKNLWSV-SGLDGQ-SLGQFNGVVAS 130 (235)
Q Consensus 75 ~~GM~~l~~~La~---~l~~~i~~~~~V~~i~~~~~~~~w~l-~~~~G~-~~~~~d~VVlA 130 (235)
.+|| .+.+.|.+ ..+.+++.+++|.+++. .+++... ...+|+ ....+|.||+|
T Consensus 256 lpG~-rL~~aL~~~l~~~Gv~I~~g~~V~~v~~--~~~~V~~v~~~~g~~~~i~AD~VVLA 313 (422)
T PRK05329 256 VPGL-RLQNALRRAFERLGGRIMPGDEVLGAEF--EGGRVTAVWTRNHGDIPLRARHFVLA 313 (422)
T ss_pred CchH-HHHHHHHHHHHhCCCEEEeCCEEEEEEE--eCCEEEEEEeeCCceEEEECCEEEEe
Confidence 3455 34444443 24789999999999986 4444443 233443 22468999999
No 168
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=36.73 E-value=78 Score=28.55 Aligned_cols=60 Identities=15% Similarity=0.096 Sum_probs=41.6
Q ss_pred ceEEe-CCCchHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 70 KKYVG-VPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 70 ~~yvg-~~GM~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
..|+. +.-+.......|+..|.+++.+++|..+.. +++++.+....|.....++.||.|+
T Consensus 88 ~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~--~~~~~~~~~~~~~~e~~a~~vI~Ad 148 (396)
T COG0644 88 EGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIR--EDDGVVVGVRAGDDEVRAKVVIDAD 148 (396)
T ss_pred ceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEE--eCCcEEEEEEcCCEEEEcCEEEECC
Confidence 34544 555555555556667899999999999997 6777766554442223689999994
No 169
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=36.49 E-value=50 Score=30.38 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=35.2
Q ss_pred CCchHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 76 PGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 76 ~GM~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
+..+..++...+.+|++|++++.|++++. ++..+ .+|+...+++.||-|
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~----~~v~~--~~g~~~I~~~tvvWa 257 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTP----DGVTL--KDGEEEIPADTVVWA 257 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECC----CcEEE--ccCCeeEecCEEEEc
Confidence 34456677777778999999999999963 45544 444322378999998
No 170
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=36.35 E-value=58 Score=29.61 Aligned_cols=49 Identities=8% Similarity=0.150 Sum_probs=36.5
Q ss_pred CCCchHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 75 VPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 75 ~~GM~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
..|.++|.+.|++..+++|++++.+..+.. .++.|.+.. + . ..+.||.|
T Consensus 194 ~~Gyt~~~~~ml~~~~i~v~l~~~~~~~~~--~~~~~~~~~--~-~--~~~~vi~T 242 (377)
T TIGR00031 194 KGGYTKLFEKMLDHPLIDVKLNCHINLLKD--KDSQLHFAN--K-A--IRKPVIYT 242 (377)
T ss_pred cccHHHHHHHHHhcCCCEEEeCCccceeec--cccceeecc--c-c--ccCcEEEe
Confidence 678999999999876788999998888874 455576632 2 2 12779999
No 171
>PRK07512 L-aspartate oxidase; Provisional
Probab=36.18 E-value=51 Score=31.11 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=31.7
Q ss_pred hHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCe---EEEeCCCcccccccEEEecCCCC
Q 026682 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLW---SVSGLDGQSLGQFNGVVASDKNV 134 (235)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w---~l~~~~G~~~~~~d~VVlA~~~~ 134 (235)
..|.+.+.+..+++++.++.|..|.. +++.+ .+...++.....++.||||.-+.
T Consensus 140 ~~L~~~~~~~~gV~i~~~~~v~~Li~--~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 140 RALIAAVRATPSITVLEGAEARRLLV--DDGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHHhCCCCEEEECcChhheee--cCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 33444443333688999999999874 44433 23322232224689999995443
No 172
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=33.92 E-value=93 Score=29.02 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=31.6
Q ss_pred hHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeE-E--EeCCCcccccccEEEecCCC
Q 026682 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWS-V--SGLDGQSLGQFNGVVASDKN 133 (235)
Q Consensus 79 ~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~-l--~~~~G~~~~~~d~VVlA~~~ 133 (235)
..|.+.+.+..+++++.++.|..|.. +++... + ...++.....++.||+|.-+
T Consensus 132 ~~L~~~~~~~~gi~i~~~~~v~~l~~--~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG 187 (488)
T TIGR00551 132 TTLVKKALNHPNIRIIEGENALDLLI--ETGRVVGVWVWNRETVETCHADAVVLATGG 187 (488)
T ss_pred HHHHHHHHhcCCcEEEECeEeeeeec--cCCEEEEEEEEECCcEEEEEcCEEEECCCc
Confidence 33444444334688999999999975 444433 3 22222122368999999433
No 173
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=33.82 E-value=1.1e+02 Score=27.51 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=30.4
Q ss_pred CeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 91 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 91 ~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
..+++++.|.+|+. .++++.+...+|..+ .++.||-|
T Consensus 101 ~~~~~~~~V~~i~~--~~~~~~v~~~~g~~i-~a~~VvDa 137 (374)
T PF05834_consen 101 GVIRLNARVTSIEE--TGDGVLVVLADGRTI-RARVVVDA 137 (374)
T ss_pred CeEEEccEEEEEEe--cCceEEEEECCCCEE-EeeEEEEC
Confidence 45889999999996 667788988888753 68889888
No 174
>PRK10262 thioredoxin reductase; Provisional
Probab=33.16 E-value=86 Score=27.16 Aligned_cols=37 Identities=11% Similarity=0.272 Sum_probs=25.8
Q ss_pred CCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
.+.+++.+ +|..|+. .++.|++..+.+. ..||.||+|
T Consensus 76 ~~~~~~~~-~v~~v~~--~~~~~~v~~~~~~--~~~d~vilA 112 (321)
T PRK10262 76 FETEIIFD-HINKVDL--QNRPFRLTGDSGE--YTCDALIIA 112 (321)
T ss_pred CCCEEEee-EEEEEEe--cCCeEEEEecCCE--EEECEEEEC
Confidence 44456665 5777876 6678998765543 269999999
No 175
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=33.02 E-value=94 Score=29.80 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=32.7
Q ss_pred hHHHHHHhc---CCCCeeEcCeeEEEEEeecCCCCeE-EEe-CCCcc-cccc-cEEEecCCCCC
Q 026682 79 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNLWS-VSG-LDGQS-LGQF-NGVVASDKNVV 135 (235)
Q Consensus 79 ~~l~~~La~---~l~~~i~~~~~V~~i~~~~~~~~w~-l~~-~~G~~-~~~~-d~VVlA~~~~p 135 (235)
.+|++.|.+ ..+++|+++++|++|.. +++... +.. .+|+. ...+ +.||||.-+..
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~--~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~ 278 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTD--DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFD 278 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEe--cCCEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence 566666644 35789999999999974 433221 211 23432 2234 57999955543
No 176
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=32.57 E-value=96 Score=28.72 Aligned_cols=42 Identities=19% Similarity=0.068 Sum_probs=29.2
Q ss_pred CCCCeeEcCeeEEEEEeecCCCCeEEEeC---CCc-ccccccEEEecC
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGL---DGQ-SLGQFNGVVASD 131 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~---~G~-~~~~~d~VVlA~ 131 (235)
..+++++++++|.+++. +++++.+... +|. ....+|.||++.
T Consensus 227 ~~gV~i~~~~~V~~i~~--~~~~v~v~~~~~~~g~~~~i~~D~vi~a~ 272 (466)
T PRK06115 227 KQGMKFKLGSKVTGATA--GADGVSLTLEPAAGGAAETLQADYVLVAI 272 (466)
T ss_pred hcCCEEEECcEEEEEEE--cCCeEEEEEEEcCCCceeEEEeCEEEEcc
Confidence 35789999999999985 5556665432 232 224789999983
No 177
>PTZ00058 glutathione reductase; Provisional
Probab=31.74 E-value=1.2e+02 Score=29.14 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=28.9
Q ss_pred CCCCeeEcCeeEEEEEeecCC-CCeEEEeCCCcccccccEEEecC
Q 026682 88 QPGVESKFGVGVGRFEWLEDK-NLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~-~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
..++++++++.|.+|+. .+ ++..+...++.....+|.||++.
T Consensus 290 ~~GV~i~~~~~V~~I~~--~~~~~v~v~~~~~~~~i~aD~VlvA~ 332 (561)
T PTZ00058 290 KNNINIITHANVEEIEK--VKEKNLTIYLSDGRKYEHFDYVIYCV 332 (561)
T ss_pred HCCCEEEeCCEEEEEEe--cCCCcEEEEECCCCEEEECCEEEECc
Confidence 35789999999999985 33 34555443443224789999993
No 178
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=30.55 E-value=87 Score=31.72 Aligned_cols=38 Identities=8% Similarity=0.234 Sum_probs=28.6
Q ss_pred CCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
..+++++++++|..|.+ .. -.|.+.+|..+ .||.||+|
T Consensus 71 ~~gI~~~~g~~V~~Id~--~~--~~V~~~~G~~i-~yD~LVIA 108 (847)
T PRK14989 71 KHGIKVLVGERAITINR--QE--KVIHSSAGRTV-FYDKLIMA 108 (847)
T ss_pred hCCCEEEcCCEEEEEeC--CC--cEEEECCCcEE-ECCEEEEC
Confidence 35788999999999975 32 35566677543 79999999
No 179
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=28.60 E-value=1.6e+02 Score=26.37 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=28.8
Q ss_pred CCCeeEcCeeEEEEEeecCCCCeEEEe-CCCc-ccccccEEEecC
Q 026682 89 PGVESKFGVGVGRFEWLEDKNLWSVSG-LDGQ-SLGQFNGVVASD 131 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~~-~~G~-~~~~~d~VVlA~ 131 (235)
.+.+++++++|.+++. .++++..|+. .+|+ ....+|.||-||
T Consensus 116 ~gv~v~~~~~v~~i~~-~~~~~~~V~~~~~G~~~~i~ad~vVgAD 159 (392)
T PRK08243 116 AGGPIRFEASDVALHD-FDSDRPYVTYEKDGEEHRLDCDFIAGCD 159 (392)
T ss_pred CCCeEEEeeeEEEEEe-cCCCceEEEEEcCCeEEEEEeCEEEECC
Confidence 4678999999999973 1344556665 3564 223689888885
No 180
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=28.44 E-value=87 Score=28.15 Aligned_cols=57 Identities=16% Similarity=0.182 Sum_probs=33.0
Q ss_pred chHHHHHHhcC---CCCeeEcCeeEEEEEeecCCCCe---EEE-eCCCc-ccccccEEEecCCCCCc
Q 026682 78 MNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLW---SVS-GLDGQ-SLGQFNGVVASDKNVVS 136 (235)
Q Consensus 78 M~~l~~~La~~---l~~~i~~~~~V~~i~~~~~~~~w---~l~-~~~G~-~~~~~d~VVlA~~~~pa 136 (235)
...+.+.|.+. .+++|+++++|++|.. ++++. .+. ..+|+ ....+++||||.-+...
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~--e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLIT--EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEE--ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEE--eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 34455555443 3689999999999986 44433 233 13454 22368899999555444
No 181
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=27.48 E-value=68 Score=27.46 Aligned_cols=41 Identities=32% Similarity=0.366 Sum_probs=27.3
Q ss_pred CCCeeEcCeeEEEEEeecCCCCeEEE--eC-CCcc-cccccEEEecC
Q 026682 89 PGVESKFGVGVGRFEWLEDKNLWSVS--GL-DGQS-LGQFNGVVASD 131 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w~l~--~~-~G~~-~~~~d~VVlA~ 131 (235)
.+++++++++|.+++. +.+++.+. .. +|+. ...+|.||-||
T Consensus 124 ~gv~i~~~~~v~~~~~--d~~~~~~~~~~~~~g~~~~i~adlvVgAD 168 (356)
T PF01494_consen 124 RGVDIRFGTRVVSIEQ--DDDGVTVVVRDGEDGEEETIEADLVVGAD 168 (356)
T ss_dssp HTEEEEESEEEEEEEE--ETTEEEEEEEETCTCEEEEEEESEEEE-S
T ss_pred hhhhheeeeecccccc--cccccccccccccCCceeEEEEeeeeccc
Confidence 3578999999999986 55565443 33 3432 23689999983
No 182
>PRK07121 hypothetical protein; Validated
Probab=27.42 E-value=1.5e+02 Score=27.59 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=31.5
Q ss_pred hHHHHHHhc---CCCCeeEcCeeEEEEEeecCC-CCe-EEEeC-CCc-ccccc-cEEEecCCC
Q 026682 79 NSICKALCH---QPGVESKFGVGVGRFEWLEDK-NLW-SVSGL-DGQ-SLGQF-NGVVASDKN 133 (235)
Q Consensus 79 ~~l~~~La~---~l~~~i~~~~~V~~i~~~~~~-~~w-~l~~~-~G~-~~~~~-d~VVlA~~~ 133 (235)
..+.+.|.+ ..+++|+++++|++|.. ++ +.. -+... +|+ ....+ +.||||.-+
T Consensus 177 ~~~~~~L~~~~~~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 177 AMLMDPLAKRAAALGVQIRYDTRATRLIV--DDDGRVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--CCCCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 345555543 34689999999999975 33 232 23222 332 22356 899999443
No 183
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=27.12 E-value=1.6e+02 Score=27.10 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=34.6
Q ss_pred CCchHHHHHHhc---CCCCeeEcCeeEEEEEeecCCCCeE-EEe--CCCc-ccccccEEEecCCC
Q 026682 76 PGMNSICKALCH---QPGVESKFGVGVGRFEWLEDKNLWS-VSG--LDGQ-SLGQFNGVVASDKN 133 (235)
Q Consensus 76 ~GM~~l~~~La~---~l~~~i~~~~~V~~i~~~~~~~~w~-l~~--~~G~-~~~~~d~VVlA~~~ 133 (235)
++...+++.|.+ ..+++++++++|++|.. +++++. +.. .+|+ ....++.||+|.-+
T Consensus 128 g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~--~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 128 GGGKALVNALYRSAERLGVEIRYDAPVTALEL--DDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--cCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 334455555543 35789999999999986 445443 332 3342 22367999999433
No 184
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=27.08 E-value=1.4e+02 Score=27.73 Aligned_cols=39 Identities=10% Similarity=0.038 Sum_probs=27.6
Q ss_pred CeeEcCeeEEEEEeecCCCCeEEEeCC--C-cccccccEEEecC
Q 026682 91 VESKFGVGVGRFEWLEDKNLWSVSGLD--G-QSLGQFNGVVASD 131 (235)
Q Consensus 91 ~~i~~~~~V~~i~~~~~~~~w~l~~~~--G-~~~~~~d~VVlA~ 131 (235)
++++++++|..++. .+++..+...+ | .....+|.||++.
T Consensus 229 v~i~~~~~v~~i~~--~~~~~~v~~~~~~~~~~~i~~D~vi~a~ 270 (471)
T PRK06467 229 FNIMLETKVTAVEA--KEDGIYVTMEGKKAPAEPQRYDAVLVAV 270 (471)
T ss_pred eEEEcCCEEEEEEE--cCCEEEEEEEeCCCcceEEEeCEEEEee
Confidence 67999999999985 55566665433 3 1224799999984
No 185
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=27.00 E-value=1.6e+02 Score=27.13 Aligned_cols=47 Identities=17% Similarity=0.101 Sum_probs=29.8
Q ss_pred HHHhcCCCCeeEcCeeEEEEEeecCCCCeEE-EeCCCc-ccccccEEEecC
Q 026682 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSV-SGLDGQ-SLGQFNGVVASD 131 (235)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l-~~~~G~-~~~~~d~VVlA~ 131 (235)
+.|. ..+++++++++|.+++.. .+++..+ ...+|+ ....+|.||++.
T Consensus 229 ~~l~-~~gI~i~~~~~v~~i~~~-~~~~~~~~~~~~g~~~~i~~D~vi~a~ 277 (472)
T PRK05976 229 RLLK-KLGVRVVTGAKVLGLTLK-KDGGVLIVAEHNGEEKTLEADKVLVSV 277 (472)
T ss_pred HHHH-hcCCEEEeCcEEEEEEEe-cCCCEEEEEEeCCceEEEEeCEEEEee
Confidence 3443 457899999999999731 1334433 334553 224789999983
No 186
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=26.89 E-value=1.3e+02 Score=28.91 Aligned_cols=42 Identities=24% Similarity=0.158 Sum_probs=26.3
Q ss_pred CCCeeEcCeeEEEEEeecCCCC---eEEEeCCCcc-cccc-cEEEecCCC
Q 026682 89 PGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQS-LGQF-NGVVASDKN 133 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~---w~l~~~~G~~-~~~~-d~VVlA~~~ 133 (235)
.+++|++++.|.+|.. +++. +.+. .+|+. ...+ +.||||.-+
T Consensus 234 ~Gv~i~~~t~v~~Li~--~~g~V~GV~~~-~~g~~~~i~A~~~VVlAtGg 280 (578)
T PRK12843 234 RGVRILTQTDVESLET--DHGRVIGATVV-QGGVRRRIRARGGVVLATGG 280 (578)
T ss_pred CCCEEEeCCEEEEEEe--eCCEEEEEEEe-cCCeEEEEEccceEEECCCC
Confidence 5789999999999875 3442 3332 23432 2233 689999444
No 187
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=24.79 E-value=1.5e+02 Score=27.06 Aligned_cols=36 Identities=8% Similarity=0.218 Sum_probs=26.6
Q ss_pred CCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
..+++++++++|.+++. . .+..++|+. ..+|.||++
T Consensus 201 ~~gI~i~~~~~v~~i~~----~--~v~~~~g~~-~~~D~vl~a 236 (438)
T PRK13512 201 KREIPYRLNEEIDAING----N--EVTFKSGKV-EHYDMIIEG 236 (438)
T ss_pred hcCCEEEECCeEEEEeC----C--EEEECCCCE-EEeCEEEEC
Confidence 35789999999999962 2 355556654 368999998
No 188
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=24.66 E-value=1.7e+02 Score=27.52 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCeeEcCeeEEEEEeecCCCCe---EEEeCCCc-cccccc-EEEecCCCC
Q 026682 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLW---SVSGLDGQ-SLGQFN-GVVASDKNV 134 (235)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w---~l~~~~G~-~~~~~d-~VVlA~~~~ 134 (235)
+.+.+.+..+++|+++++|+.|.. +++.. .+. .+|+ ....++ .||||.-+.
T Consensus 179 l~~~~~~~~gv~i~~~t~~~~Li~--~~g~v~Gv~~~-~~g~~~~i~A~k~VIlAtGG~ 234 (513)
T PRK12837 179 FLAALARFPNARLRLNTPLVELVV--EDGRVVGAVVE-RGGERRRVRARRGVLLAAGGF 234 (513)
T ss_pred HHHHHHhCCCCEEEeCCEEEEEEe--cCCEEEEEEEE-ECCcEEEEEeCceEEEeCCCc
Confidence 333444434689999999999975 44433 222 2343 223465 699995544
No 189
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=24.51 E-value=1.6e+02 Score=28.57 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=29.2
Q ss_pred HHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEE---EeC-CCc----ccccccEEEec
Q 026682 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSV---SGL-DGQ----SLGQFNGVVAS 130 (235)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l---~~~-~G~----~~~~~d~VVlA 130 (235)
|.++|- ..|++++++++|+.|....+++.-++ ... +|+ .+...|.||+|
T Consensus 232 L~~~Le-~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivT 288 (576)
T PRK13977 232 LIKYLE-DHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVT 288 (576)
T ss_pred HHHHHH-hCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEe
Confidence 344433 35899999999999986112221222 221 222 34578999998
No 190
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=24.36 E-value=1.3e+02 Score=26.92 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=35.1
Q ss_pred eEEeCCCchHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 71 KYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 71 ~yvg~~GM~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
.|..... ..+-++|.+.++..|+++++|.++. .+++.+ .+|+.+ .+|.||-|
T Consensus 82 ~Y~~I~r-~~f~~~l~~~l~~~i~~~~~V~~v~----~~~v~l--~dg~~~-~A~~VI~A 133 (370)
T TIGR01789 82 AYRSMTS-TRFHEGLLQAFPEGVILGRKAVGLD----ADGVDL--APGTRI-NARSVIDC 133 (370)
T ss_pred CceEEEH-HHHHHHHHHhhcccEEecCEEEEEe----CCEEEE--CCCCEE-EeeEEEEC
Confidence 4444333 5677777776654588899999885 235666 566543 68999998
No 191
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=23.96 E-value=1.9e+02 Score=27.74 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=31.7
Q ss_pred HHHHHhcCCCCeeEcCeeEEEEEeecCCCCeE----EEeCCCc-ccccccEEEecCCC
Q 026682 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWS----VSGLDGQ-SLGQFNGVVASDKN 133 (235)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~----l~~~~G~-~~~~~d~VVlA~~~ 133 (235)
|.+.+.+..++++..++.|..|.. +++... +...+|+ ....++.||+|+-+
T Consensus 139 L~~~~~~~~~i~i~~~~~v~~Li~--~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 139 LFQTSLKYPQIQRFDEHFVLDILV--DDGHVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred HHHHhhcCCCcEEEeCeEEEEEEE--eCCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 333343323578899999999975 445443 3334564 23468999999544
No 192
>KOG3086 consensus Predicted dioxygenase [General function prediction only]
Probab=23.91 E-value=71 Score=27.44 Aligned_cols=32 Identities=28% Similarity=0.464 Sum_probs=27.0
Q ss_pred CcceecccCCCCceecccCCCceecCChHHHHHHHHHHhC
Q 026682 1 MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESG 40 (235)
Q Consensus 1 maTRr~~~~~~~~~~fDhGAqyft~~~~~f~~~v~~~~~~ 40 (235)
||.|++ + .-|.-.|+|.+.+++.++++.|+.+
T Consensus 1 MS~r~~--~------AtHAGSWYt~~~~~Ls~QL~~wL~~ 32 (296)
T KOG3086|consen 1 MSNRVV--E------ATHAGSWYTASGPQLSAQLEGWLSQ 32 (296)
T ss_pred CCcccc--c------cccccccccCCHHHHHHHHHHHHhc
Confidence 677765 2 5789999999999999999999874
No 193
>PRK07804 L-aspartate oxidase; Provisional
Probab=23.53 E-value=1.7e+02 Score=27.76 Aligned_cols=43 Identities=12% Similarity=-0.051 Sum_probs=27.8
Q ss_pred CCCeeEcCeeEEEEEeecCCC----CeEEE-----eCCCcccccccEEEecCCC
Q 026682 89 PGVESKFGVGVGRFEWLEDKN----LWSVS-----GLDGQSLGQFNGVVASDKN 133 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~----~w~l~-----~~~G~~~~~~d~VVlA~~~ 133 (235)
.+++++.++.|..|.. +++ ++.+. ..+|.....++.||+|+-+
T Consensus 157 ~gV~i~~~~~v~~Li~--~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 157 DPLDIREHALALDLLT--DGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred CCCEEEECeEeeeeEE--cCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 4688999999999975 433 34443 1233222368999999544
No 194
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=23.42 E-value=1.9e+02 Score=27.38 Aligned_cols=51 Identities=10% Similarity=-0.034 Sum_probs=31.3
Q ss_pred HHHHHHhcCCCCeeEcCeeEEEEEeecCCCC-eE---EEe-CCCcc-cccccEEEecCCC
Q 026682 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNL-WS---VSG-LDGQS-LGQFNGVVASDKN 133 (235)
Q Consensus 80 ~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~-w~---l~~-~~G~~-~~~~d~VVlA~~~ 133 (235)
.|.+.+.+ .+++|.+++.|..|.. ++++ .. +.. .+|+. ...++.||+|.-+
T Consensus 139 ~L~~~~~~-~gv~i~~~t~v~~Li~--~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 139 GLMEYLIK-ERIKILEEVMAIKLIV--DENREVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred HHHHHHhc-CCCEEEeCeEeeeeEE--eCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 34444433 5689999999999975 4443 32 222 45542 2367999999443
No 195
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=23.01 E-value=2.1e+02 Score=27.17 Aligned_cols=41 Identities=17% Similarity=0.048 Sum_probs=27.5
Q ss_pred CCCCeeEcCeeEEEEEeecCCCCe---EEEe-CCCc-ccccccEEEec
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNLW---SVSG-LDGQ-SLGQFNGVVAS 130 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w---~l~~-~~G~-~~~~~d~VVlA 130 (235)
..|.+++.+++|++|.+ +++++ ++.+ .+|+ ....++.||.|
T Consensus 161 ~~Ga~i~~~t~V~~i~~--~~~~v~gv~v~d~~~g~~~~i~A~~VVnA 206 (546)
T PRK11101 161 EHGAQILTYHEVTGLIR--EGDTVCGVRVRDHLTGETQEIHAPVVVNA 206 (546)
T ss_pred hCCCEEEeccEEEEEEE--cCCeEEEEEEEEcCCCcEEEEECCEEEEC
Confidence 35789999999999986 55543 3322 2332 22368999998
No 196
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=22.75 E-value=1.8e+02 Score=27.36 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=34.1
Q ss_pred CCCeeEcCeeEEEEEeecCCCCe-EEEeC-CCc--ccccccEEEecCCCCCccchhcccCC
Q 026682 89 PGVESKFGVGVGRFEWLEDKNLW-SVSGL-DGQ--SLGQFNGVVASDKNVVSPRFRDVTGR 145 (235)
Q Consensus 89 l~~~i~~~~~V~~i~~~~~~~~w-~l~~~-~G~--~~~~~d~VVlA~~~~pap~~~~ll~~ 145 (235)
.+++|+.+++|.+|.. ++++. -|.+. .|+ ....++.|||+.-.+-.|+++.+-++
T Consensus 207 ~nl~i~~~~~V~rI~~--~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGI 265 (532)
T TIGR01810 207 PNLEVQTRAFVTKINF--EGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGI 265 (532)
T ss_pred CCeEEEeCCEEEEEEe--cCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCC
Confidence 4588999999999986 44322 23222 222 22357889999555566665555443
No 197
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=22.66 E-value=2.2e+02 Score=26.09 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=25.9
Q ss_pred CeeEcCeeEEEEEeecCCC-CeEEEeCCCc-ccccccEEEec
Q 026682 91 VESKFGVGVGRFEWLEDKN-LWSVSGLDGQ-SLGQFNGVVAS 130 (235)
Q Consensus 91 ~~i~~~~~V~~i~~~~~~~-~w~l~~~~G~-~~~~~d~VVlA 130 (235)
++++++++|.+++. .++ +..+...+|. ....+|.||++
T Consensus 224 I~i~~~~~v~~i~~--~~~~~v~~~~~~~~~~~i~~D~vi~a 263 (460)
T PRK06292 224 FKIKLGAKVTSVEK--SGDEKVEELEKGGKTETIEADYVLVA 263 (460)
T ss_pred cEEEcCCEEEEEEE--cCCceEEEEEcCCceEEEEeCEEEEc
Confidence 78999999999985 333 4454333332 22479999998
No 198
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.59 E-value=1.8e+02 Score=27.84 Aligned_cols=55 Identities=7% Similarity=-0.008 Sum_probs=34.3
Q ss_pred chHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeE----EEeCCCcc-cccccEEEecCCCC
Q 026682 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWS----VSGLDGQS-LGQFNGVVASDKNV 134 (235)
Q Consensus 78 M~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~----l~~~~G~~-~~~~d~VVlA~~~~ 134 (235)
+..|.+.+.+..++++..++.|..|.. +++.+. +...+|+. ...++.||||.-+.
T Consensus 140 ~~~L~~~~~~~~gv~i~~~~~v~~Li~--~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 140 MHTLYSRALRFDNIHFYDEHFVTSLIV--ENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHHHHhcCCCEEEECCEEEEEEE--ECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 345555555434678999999999975 444332 23345642 23679999995443
No 199
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=22.50 E-value=6.3e+02 Score=24.75 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.0
Q ss_pred CceEEEEcChhhhHHHhhhccC
Q 026682 212 RLCKDCNCTNWTSKAFRSNIKK 233 (235)
Q Consensus 212 ~~~wvl~a~~~~~~~~~~~~~~ 233 (235)
..||.-|.+++.++-+.+|+++
T Consensus 235 ~~C~~t~t~~~~h~ii~~~~~~ 256 (617)
T TIGR00136 235 LPCYLTHTNPKTHDLIRSNLHR 256 (617)
T ss_pred ccCCcccCcHHHHHHHHhcccc
Confidence 5699999999999999888875
No 200
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=21.18 E-value=1.2e+02 Score=30.22 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=0.0
Q ss_pred HhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEec
Q 026682 85 LCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (235)
Q Consensus 85 La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA 130 (235)
..+..+++++.+.+|..|.+ +++ .|.++.|..+ .||.+|+|
T Consensus 68 wy~~~~i~L~~~~~v~~idr--~~k--~V~t~~g~~~-~YDkLilA 108 (793)
T COG1251 68 WYEENGITLYTGEKVIQIDR--ANK--VVTTDAGRTV-SYDKLIIA 108 (793)
T ss_pred hHHHcCcEEEcCCeeEEecc--Ccc--eEEccCCcEe-ecceeEEe
No 201
>PLN02546 glutathione reductase
Probab=20.97 E-value=2.1e+02 Score=27.37 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=28.5
Q ss_pred CCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecC
Q 026682 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (235)
Q Consensus 88 ~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~ 131 (235)
..++++++++.|.++.. ..++...+..++|. ...+|.||++.
T Consensus 305 ~~GV~i~~~~~v~~i~~-~~~g~v~v~~~~g~-~~~~D~Viva~ 346 (558)
T PLN02546 305 LRGIEFHTEESPQAIIK-SADGSLSLKTNKGT-VEGFSHVMFAT 346 (558)
T ss_pred HCCcEEEeCCEEEEEEE-cCCCEEEEEECCeE-EEecCEEEEee
Confidence 35789999999999975 12333555555553 23489999983
No 202
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=20.37 E-value=2.3e+02 Score=26.90 Aligned_cols=51 Identities=12% Similarity=-0.047 Sum_probs=31.8
Q ss_pred HHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeE---E-EeCCCcc-cccccEEEecCCC
Q 026682 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWS---V-SGLDGQS-LGQFNGVVASDKN 133 (235)
Q Consensus 80 ~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~---l-~~~~G~~-~~~~d~VVlA~~~ 133 (235)
.|.+.+.+ .++++..++.|+.|.. +++.+. + ...+|+. ...++.||+|.-+
T Consensus 134 ~L~~~~~~-~gv~i~~~~~v~~L~~--~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG 189 (566)
T TIGR01812 134 TLYEQCLK-LGVSFFNEYFALDLIH--DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG 189 (566)
T ss_pred HHHHHHHH-cCCEEEeccEEEEEEE--eCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence 34444333 3789999999999975 444442 2 2235642 2367999999544
Done!