BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026683
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQ73|PX11C_ARATH Peroxisomal membrane protein 11C OS=Arabidopsis thaliana GN=PEX11C
PE=1 SV=1
Length = 235
Score = 421 bits (1081), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/233 (85%), Positives = 223/233 (95%)
Query: 1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
MSTL+ TRAEL LVV+YLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDK+TSLARKVF
Sbjct: 1 MSTLETTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVF 60
Query: 61 RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
RLFKFVNDLHALISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGR+GIYK+KERAE
Sbjct: 61 RLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAE 120
Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNER 180
+LGRISLFCWMGSSVC++LVE+GELGRLS S+KKLEKE+ + DKH+NEQY+AK++KSNER
Sbjct: 121 ILGRISLFCWMGSSVCTSLVEVGELGRLSASIKKLEKEIGNKDKHQNEQYRAKVEKSNER 180
Query: 181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPAPVKAK 233
SLAL+K+ MD+VVA GLLQLAPKKVTPRVTGAFGF +SLISCYQLLP+ K+K
Sbjct: 181 SLALIKAGMDVVVAFGLLQLAPKKVTPRVTGAFGFASSLISCYQLLPSHPKSK 233
>sp|O80845|PX11D_ARATH Peroxisomal membrane protein 11D OS=Arabidopsis thaliana GN=PEX11D
PE=1 SV=2
Length = 236
Score = 420 bits (1080), Expect = e-117, Method: Compositional matrix adjust.
Identities = 200/234 (85%), Positives = 221/234 (94%)
Query: 2 STLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFR 61
+TLD +RAELALVV+YLNKAEARDK+CRAIQYGSKFLS GQPGTAQNVDKSTSLARKVFR
Sbjct: 3 TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFR 62
Query: 62 LFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAEL 121
LFKFVNDLH LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKERAEL
Sbjct: 63 LFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAEL 122
Query: 122 LGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERS 181
LGRISLFCWMGSSVC+TLVE+GE+GRLS+SMKK+EK LK+ +K+++E Y+AKLKKSNERS
Sbjct: 123 LGRISLFCWMGSSVCTTLVEVGEMGRLSSSMKKIEKGLKNGNKYQDEDYRAKLKKSNERS 182
Query: 182 LALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPAPVKAKAP 235
LAL+KSAMDIVVA GLLQLAP K+TPRVTGAFGF+TS+ISCYQLLP K K P
Sbjct: 183 LALIKSAMDIVVAAGLLQLAPTKITPRVTGAFGFITSIISCYQLLPTRPKIKTP 236
>sp|Q84JW1|PX11E_ARATH Peroxisomal membrane protein 11E OS=Arabidopsis thaliana GN=PEX11E
PE=1 SV=1
Length = 231
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/235 (82%), Positives = 215/235 (91%), Gaps = 4/235 (1%)
Query: 1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
M+TLD TRAELAL+VLYLNKAEARDKICRAIQYGSKFLS GQPGTAQ VDK+TSLARKVF
Sbjct: 1 MTTLDLTRAELALIVLYLNKAEARDKICRAIQYGSKFLSGGQPGTAQTVDKNTSLARKVF 60
Query: 61 RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
RLFKFVND H LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKER E
Sbjct: 61 RLFKFVNDFHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERTE 120
Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNER 180
LLGRISLFCW+GSSVC++ VE+GELGRLS+SMKK+EKELK D E Y+AKL+KSN+R
Sbjct: 121 LLGRISLFCWLGSSVCTSAVEIGELGRLSSSMKKMEKELKADD----ELYRAKLQKSNDR 176
Query: 181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPAPVKAKAP 235
+LAL+KS+MDI+VA+GLLQLAPK ++PRVTGAFGF TSLISCYQLLP+ K K P
Sbjct: 177 TLALIKSSMDIIVAIGLLQLAPKTISPRVTGAFGFTTSLISCYQLLPSRPKLKTP 231
>sp|Q5VRJ8|PX115_ORYSJ Peroxisomal membrane protein 11-5 OS=Oryza sativa subsp. japonica
GN=PEX11-5 PE=2 SV=1
Length = 233
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/233 (77%), Positives = 212/233 (90%)
Query: 1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
MS+L++ RA+LAL++LYLNKAEARDKICRAIQYGSKF+S+GQPG AQNVDKSTSLARKVF
Sbjct: 1 MSSLESARADLALLILYLNKAEARDKICRAIQYGSKFVSNGQPGPAQNVDKSTSLARKVF 60
Query: 61 RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
RLFKFVNDLHALISP +GTPLPL+LLGKSKNALLSTFLFLDQ+VW GR+GIYKNKERAE
Sbjct: 61 RLFKFVNDLHALISPPAKGTPLPLILLGKSKNALLSTFLFLDQIVWAGRTGIYKNKERAE 120
Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNER 180
L +I+ +C++GS+ C++++E+ EL RLS SMKKLEKELK + KNEQYQ KL+K NER
Sbjct: 121 FLSKIAFYCFLGSNTCTSIIEVAELQRLSKSMKKLEKELKHQELLKNEQYQMKLQKCNER 180
Query: 181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPAPVKAK 233
LAL+KS++DIVVA+GLLQLAPKKVTPRVTGAFGF +SLI+CYQLLPAP K+K
Sbjct: 181 RLALIKSSLDIVVAIGLLQLAPKKVTPRVTGAFGFASSLIACYQLLPAPAKSK 233
>sp|Q10SM7|PX111_ORYSJ Peroxisomal membrane protein 11-1 OS=Oryza sativa subsp. japonica
GN=PEX11-1 PE=2 SV=1
Length = 237
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/237 (78%), Positives = 216/237 (91%), Gaps = 3/237 (1%)
Query: 1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
MSTLDATRAEL LVVLYLNKAEARDKICRAIQYGSKF+S+GQPGTAQ+VD+ST+LARKVF
Sbjct: 1 MSTLDATRAELGLVVLYLNKAEARDKICRAIQYGSKFISNGQPGTAQDVDRSTTLARKVF 60
Query: 61 RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
RL K+VNDLH LISP +GTPL LVLLGKSKNALLSTFLFLDQ VWLGR+GIYKNKER +
Sbjct: 61 RLLKWVNDLHGLISPPAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRTGIYKNKERTD 120
Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNER 180
+ RISL+CWM SSVC+ LVELGEL RLS SM+KL +EL+D+DK++N+QY++K+K+S+ER
Sbjct: 121 RIVRISLYCWMASSVCAGLVELGELKRLSKSMRKLARELRDTDKYENDQYKSKMKQSDER 180
Query: 181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLP--AP-VKAKA 234
LALVK+AMD+VVAVGLLQL+PKK+TPRVTGAFGFVTSLISCYQ LP AP +K KA
Sbjct: 181 LLALVKAAMDVVVAVGLLQLSPKKITPRVTGAFGFVTSLISCYQQLPSRAPAIKVKA 237
>sp|Q7XU74|PX114_ORYSJ Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. japonica
GN=PEX11-4 PE=2 SV=2
Length = 222
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 93/222 (41%), Gaps = 16/222 (7%)
Query: 14 VVLYLNKAEARDKICRAIQYGSKFL-------SDGQPGTAQNVDKSTSLARKVFRLFKFV 66
+V++L K + DK+ + QY SK S G G A+N + S L+RK FR +F+
Sbjct: 10 LVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKAFRTGRFL 69
Query: 67 NDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRIS 126
L+ L + P L NA + F D WL R G+ A L R+S
Sbjct: 70 TGLNGL-----RRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLD----AWLARRMS 120
Query: 127 LFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVK 186
G SV +L + +++ K L++ K K+++ + R +A
Sbjct: 121 FISAFGESVGYVFFIAMDLIMIRRGLRQERKLLREGGKDKDKEVKKIRMDRVMRLMATAA 180
Query: 187 SAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPA 228
+ D+V+ + ++ P G G V++ Y+ P+
Sbjct: 181 NVADLVIGIADIEPNPFCNHAVTLGISGLVSAWAGWYRNWPS 222
>sp|Q01IH3|PX114_ORYSI Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. indica
GN=PEX11-4 PE=2 SV=1
Length = 222
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 93/222 (41%), Gaps = 16/222 (7%)
Query: 14 VVLYLNKAEARDKICRAIQYGSKFL-------SDGQPGTAQNVDKSTSLARKVFRLFKFV 66
+V++L K + DK+ + QY SK S G G A+N + S L+RK FR +F+
Sbjct: 10 LVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKAFRTGRFL 69
Query: 67 NDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRIS 126
L+ L + P L NA + F D WL R G+ A L R+S
Sbjct: 70 TGLNGL-----RRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLD----AWLARRMS 120
Query: 127 LFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVK 186
G SV +L + +++ K L++ K K+++ + R +A
Sbjct: 121 FISAFGESVGYVFFIAMDLIMIRRGLRQERKLLREGGKDKDKEVKKIRMDRVMRLMATAA 180
Query: 187 SAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPA 228
+ D+V+ + ++ P G G V++ Y+ P+
Sbjct: 181 NVADLVIGIADIEPNPFCNHAVTLGISGLVSAWAGWYRNWPS 222
>sp|Q54H86|PEX11_DICDI Peroxisomal membrane protein 11 homolog OS=Dictyostelium discoideum
GN=pex11 PE=3 SV=1
Length = 254
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 104/237 (43%), Gaps = 31/237 (13%)
Query: 18 LNKAEARDKICRAIQYGSKFL-------SDGQPGTAQNVDKSTSLARKVFRLFKFVNDLH 70
L + +DKI + +QYG+K L S + ++ ++ ARKV+RL + +
Sbjct: 21 LAQTSGKDKIAKILQYGAKLLGYIFLKRSKHWVDVMKKLETTSGSARKVWRLGNTLAEQQ 80
Query: 71 ALISPVPQGTPLPLV-LLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFC 129
+++ P + +L + + + + D ++ LG + I K LG S
Sbjct: 81 KILALFKVKNPFAFLNILALIRQSGMYFYWVFDHLI-LG-TNIGLCKFDTVKLGWYSSVS 138
Query: 130 WMGSSVCSTLVELGELG---------RLSTSMKKLEKELKDSDKH------KN----EQY 170
W +CS +++L L RL+ + K+ + D H +N +Q+
Sbjct: 139 WFFGLLCSIIIDLNTLAIMLKKEKSLRLTITQNKINANNNNIDTHTITSEVENKAIIDQF 198
Query: 171 QAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLP 227
+KK NE L K+ D+++A LL++ P + G G +++LI YQ+ P
Sbjct: 199 NEVIKKKNEIYLNCAKNGSDLIIASTLLKIYP--FSQGTIGISGIISALIGAYQMWP 253
>sp|Q10MN2|PX113_ORYSJ Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. japonica
GN=PEX11-3 PE=2 SV=1
Length = 242
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 21/156 (13%)
Query: 47 QNVDKSTSLARKVFRLFKFVNDLHAL-ISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVV 105
++ + S L+RK FRL KFV +++AL P P P + LL + + FL+Q V
Sbjct: 68 KSFESSVGLSRKAFRLGKFVQNVNALRAHPHP---PPAVALLAYGGEGV---YYFLEQFV 121
Query: 106 WLGRSGIYKNKERAELLGRIS-LFCW--MGSSVCSTLVELGELGRLSTSMKKLEKE--LK 160
WL ++G+ A LL R+ L W + V S ++L E+G+L +S+K KE +
Sbjct: 122 WLAKAGLLP----AHLLPRLQRLSAWAELLGYVGSITIKLEEIGKLESSVKMRLKEGCRE 177
Query: 161 DSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVG 196
+SD + + + LK+ +++V+ D V+A+G
Sbjct: 178 ESDVVRTLRVKLLLKR-----MSVVQDVADAVMALG 208
>sp|A2XFQ8|PX113_ORYSI Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. indica
GN=PEX11-3 PE=2 SV=1
Length = 242
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 21/156 (13%)
Query: 47 QNVDKSTSLARKVFRLFKFVNDLHAL-ISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVV 105
++ + S L+RK FRL KFV +++AL P P P + LL + + FL+Q V
Sbjct: 68 KSFESSVGLSRKAFRLGKFVQNVNALRAHPHP---PPAVALLAYGGEGV---YYFLEQFV 121
Query: 106 WLGRSGIYKNKERAELLGRIS-LFCW--MGSSVCSTLVELGELGRLSTSMKKLEKE--LK 160
WL ++G+ A LL R+ L W + V S ++L E+G+L +S+K KE +
Sbjct: 122 WLAKAGLLP----AHLLPRLQRLSAWAELLGYVGSITIKLEEIGKLESSVKMRLKEGCRE 177
Query: 161 DSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVG 196
+SD + + + LK+ +++V+ D V+A+G
Sbjct: 178 ESDVVRTLRVKLLLKR-----MSVVQDVADAVMALG 208
>sp|Q10MN3|PX112_ORYSJ Peroxisomal membrane protein 11-2 OS=Oryza sativa subsp. japonica
GN=PEX11-2 PE=2 SV=1
Length = 254
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 11/154 (7%)
Query: 47 QNVDKSTSLARKVFRLFKFVNDLHAL----ISPVPQGTPLPLVLLGKSKNALLSTFLFLD 102
++ + S L+RK FRL KFV ++AL P P PL LVLL + + FL+
Sbjct: 74 RSFESSVGLSRKAFRLGKFVQSINALRAAAYHPHPHVHPL-LVLLAYGGQGV---YNFLE 129
Query: 103 QVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDS 162
Q WL ++G+ + L RI ++ + + V S ++L E+ L + E L++
Sbjct: 130 QFAWLAKAGLLPARLLPRRLHRIGVWAQLLAHVGSIAIKLEEVAELECGV---EARLEEG 186
Query: 163 DKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVG 196
++E + +K + ++LV+ +D + VG
Sbjct: 187 CGEESEVVRTLSRKLLLKLMSLVQDMVDSAMTVG 220
>sp|Q9FZF1|PX11A_ARATH Peroxisomal membrane protein 11A OS=Arabidopsis thaliana GN=PEX11A
PE=1 SV=1
Length = 248
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 13/142 (9%)
Query: 17 YLNKAEARDKICRAIQYGSKFL--SDGQPGTA------QNVDKSTSLARKVFRLFKFVND 68
YL+K + DK+ + +Y +K + S P T ++ + S ++RK FRL KFV D
Sbjct: 24 YLSKRDGVDKLLKISRYATKIILASSLIPETRSIIPRLKSFESSVGVSRKAFRLGKFVQD 83
Query: 69 LHALISP-VPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISL 127
++AL S L L+++ L + F++Q +WL +SG+ K ++ L +IS
Sbjct: 84 INALRSSRWDSNHELVLLIIAYGGEGL---YYFVEQFIWLTKSGLIDAKH-SKWLQKISA 139
Query: 128 FCWMGSSVCSTLVELGELGRLS 149
+ + V S +++ +L +L+
Sbjct: 140 WAELVGYVGSVSIKIRDLRKLN 161
>sp|Q9STY0|PX11B_ARATH Peroxisomal membrane protein 11B OS=Arabidopsis thaliana GN=PEX11B
PE=1 SV=1
Length = 227
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 18/226 (7%)
Query: 14 VVLYLNKAEARDKICRAIQYGSKF----LSDGQPGTAQNVDK---STSLARKVFRLFKFV 66
+V++L K + DK+ + QY +K + +P A K ++ L+RK FR + +
Sbjct: 9 LVVFLAKRDGIDKLVKTFQYVAKLACWHVEATRPEAADRFKKWEVASGLSRKAFRTGRSL 68
Query: 67 NDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRIS 126
+AL P TP+ + L N+ + F D +WL R G A+L ++S
Sbjct: 69 TGFNAL-RRNPGATPM-IRFLAVLANSGEMVYFFFDHFLWLSRIGSID----AKLAKKMS 122
Query: 127 LFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNE----RSL 182
G S T + + + +K L K+L+ S E+ AK+ + R +
Sbjct: 123 FISAFGESFGYTFFIIIDCIFIKQRLKSL-KKLQHSTDEPKEEIGAKISEIRGDIVMRLM 181
Query: 183 ALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPA 228
+ + D+++A+ + P G G V++ Y+ P+
Sbjct: 182 GISANVADLLIALAEIHPNPFCNHTITLGISGLVSAWAGWYRNWPS 227
>sp|Q10333|PEX11_SCHPO Peroxisomal biogenesis factor 11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pex11 PE=3 SV=2
Length = 238
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 27/229 (11%)
Query: 14 VVLYLNKAEARDKICRAIQYGSKFLS-----DGQPGTAQN----VDKSTSLARKVFRLFK 64
V+ LN ARDK RA+Q+ +K LS G + N ++ + S +RK+F + K
Sbjct: 13 VLRMLNSMPARDKTFRALQFVAKLLSWHLFYGGSSLSTVNKWKKLESNISFSRKLFSIGK 72
Query: 65 FVN-------DLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIY--KN 115
++ D L +P+ G L + +K+ + + + + W ++ + +
Sbjct: 73 VLDYICKVYFDSLKLQNPLS-GNKSALPTISFTKDVAFAGYATAELIGWFNKTELMPCSH 131
Query: 116 KERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLK 175
++ +G+ L + SS + EL + + KK++ +++ + + Q K
Sbjct: 132 SKQISTIGKQCLAVALLSSCLAGCYELQQ------NSKKIKSATQEASEKDSTSLQTLQK 185
Query: 176 KSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQ 224
+ E +++A+D + + L + KV A G TSL+S Y+
Sbjct: 186 ERKEILFFALQNALDATIPLAELDIL--KVNDGFVAAAGITTSLMSVYK 232
>sp|O75192|PX11A_HUMAN Peroxisomal membrane protein 11A OS=Homo sapiens GN=PEX11A PE=1
SV=1
Length = 247
Score = 34.3 bits (77), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 17 YLNKAEARDKICRAIQYGS---KFLSDGQPGTAQNV------DKSTSLARKVFRLFKFVN 67
+ N+ + RD++ RA QY ++L + + G + V + S S RK FRL V+
Sbjct: 7 FTNQTQGRDRLFRATQYTCMLLRYLLEPKAGKEKVVMKLKKLESSVSTGRKWFRLGNVVH 66
Query: 68 DLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGR----SGIYKNKERA 119
+ A + +P + L + N + D ++W+ SGI K K R
Sbjct: 67 AIQATEQSIHATDLVPRLCLTLA-NLNRVIYFICDTILWVRSVGLTSGINKEKWRT 121
>sp|O14254|IDHP_SCHPO Probable isocitrate dehydrogenase [NADP], mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=idp1 PE=3 SV=2
Length = 439
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 61 RLFKFVNDL-HALISPVPQGTPL-PLVLLGKSKNALLSTFLFLDQV 104
RL KF N L HA + V +G L LL KS N + TF FLD V
Sbjct: 382 RLVKFANALEHACVRCVEKGIMTKDLYLLSKSPNGYVDTFEFLDAV 427
>sp|A2C536|PANCY_PROM1 Bifunctional pantoate ligase/cytidylate kinase OS=Prochlorococcus
marinus (strain NATL1A) GN=panC/cmk PE=3 SV=1
Length = 516
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 140 VELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDI 191
++L + G +S++ LEKE+K+ DK +E+ A LKK+ + ++ LV M+I
Sbjct: 441 LDLHKRGYEFSSIEDLEKEIKERDKKDSERKIAPLKKAQD-AIELVTDGMNI 491
>sp|Q46IM3|PANCY_PROMT Bifunctional pantoate ligase/cytidylate kinase OS=Prochlorococcus
marinus (strain NATL2A) GN=panC/cmk PE=3 SV=1
Length = 516
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 140 VELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDI 191
++L + G +S++ LEKE+K+ DK +E+ A LKK+ + ++ LV M+I
Sbjct: 441 LDLHKRGYEFSSIEDLEKEIKERDKKDSERKIAPLKKAQD-AIELVTDGMNI 491
>sp|O96011|PX11B_HUMAN Peroxisomal membrane protein 11B OS=Homo sapiens GN=PEX11B PE=1
SV=1
Length = 259
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 15 VLYLNKAEARDKICRAIQYGSKFLSDG--QPGTAQNVDKST-------SLARKVFRLFKF 65
V + +++AR+++CRA QY L + G + + K SL RK+ RL
Sbjct: 5 VRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLRLGNS 64
Query: 66 VNDLHALISPVP-QGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGI 112
+ L + V L + N L + D V+W G+SG+
Sbjct: 65 ADALESAKRAVHLSDVVLRFCITVSHLNRAL--YFACDNVLWAGKSGL 110
>sp|Q148K5|PX11B_BOVIN Peroxisomal membrane protein 11B OS=Bos taurus GN=PEX11B PE=2 SV=1
Length = 258
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 15 VLYLNKAEARDKICRAIQYGSKFLSDG--QPGTAQNVDKST-------SLARKVFRLFKF 65
V + +++AR+++CRA QY L + G + + K SL RK+ RL
Sbjct: 5 VRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLRLGNS 64
Query: 66 VNDLHALISPVP-QGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGI 112
+ L + V L + N L + D V+W G+SG+
Sbjct: 65 ADALESAKRAVHLSDVVLRFCITVSHLNRAL--YFACDNVLWAGKSGL 110
>sp|Q9Z210|PX11B_MOUSE Peroxisomal membrane protein 11B OS=Mus musculus GN=Pex11b PE=2
SV=1
Length = 259
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 20 KAEARDKICRAIQYGSKFLSDG--QPGTAQNVDKST-------SLARKVFRLFKFVNDLH 70
+++AR+++CRA QY L + G + + K SL RK+ RL + L
Sbjct: 10 QSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLEGHLSLGRKLLRLGNSTDALE 69
Query: 71 ALISPVP-QGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGI 112
+ V L + N L + D V+W G+SG+
Sbjct: 70 SAKRAVHLSDVVLRFCITVSHLNRAL--YFACDNVLWAGKSGL 110
>sp|P53254|UTP22_YEAST U3 small nucleolar RNA-associated protein 22 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UTP22 PE=1
SV=1
Length = 1237
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 18/110 (16%)
Query: 15 VLYLNK-AEARDKI-----CRAIQYGSKFL-SDGQPGTAQNVDKSTSLARKVFRLFKFVN 67
+LYL A AR+++ +++ +K+L S T +N+ S V RLFK
Sbjct: 861 ILYLRAIANARNELKPELEATFLKFTAKYLASVRHTRTLENISHSYQFYSPVVRLFKRWL 920
Query: 68 DLHALISPV-----------PQGTPLPLVLLGKSKNALLSTFLFLDQVVW 106
D H L+ + P P P + G +N L F+ Q W
Sbjct: 921 DTHLLLGHITDELAELIAIKPFVDPAPYFIPGSLENGFLKVLKFISQWNW 970
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,511,501
Number of Sequences: 539616
Number of extensions: 3005129
Number of successful extensions: 10932
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 10900
Number of HSP's gapped (non-prelim): 41
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)