Query 026683
Match_columns 235
No_of_seqs 110 out of 472
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 19:33:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026683.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026683hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z2q_B Coat protein gamma; wil 27.3 58 0.002 18.9 2.8 40 177-219 3-42 (44)
2 1nov_D Nodamura virus coat pro 20.5 92 0.0032 18.1 2.7 40 177-219 3-42 (44)
3 3bpo_A Interleukin 13; IL4, IL 14.0 1.1E+02 0.0038 22.0 2.4 29 45-73 93-121 (127)
4 1kbh_A ACTR, nuclear receptor 13.2 1.8E+02 0.0063 17.1 2.8 25 8-32 7-33 (47)
5 3vr8_C Cytochrome B-large subu 12.9 81 0.0028 24.6 1.6 28 208-235 158-185 (188)
6 1bde_A VPR protein; AIDS, HIV, 11.3 94 0.0032 17.2 1.1 19 17-35 2-20 (35)
7 2kxa_A Haemagglutinin HA2 chai 9.5 1.3E+02 0.0046 15.8 1.2 10 211-220 1-10 (30)
8 3bu8_A Telomeric repeat-bindin 9.2 1.9E+02 0.0066 23.1 2.6 34 8-41 39-73 (235)
9 3d8l_A ORF12; lactococcal phag 7.6 4.8E+02 0.017 16.6 3.6 37 24-62 37-73 (91)
10 2db7_A Hairy/enhancer-OF-split 7.6 2.7E+02 0.0091 17.5 2.3 28 10-37 27-58 (64)
No 1
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=27.29 E-value=58 Score=18.87 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccCCCCCCCccchhhhhHHHHH
Q 026683 177 SNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSL 219 (235)
Q Consensus 177 ~~~~~l~lv~~~~D~~i~~~~l~~~~~~~~~~~vg~~G~iSsl 219 (235)
..|++.++++... .+.+.++-+-+-...|+.|+.++++++
T Consensus 3 ~WErVk~ilks~l---~a~S~iPGPVG~~asGi~~l~~l~~~l 42 (44)
T 2z2q_B 3 MWERVKSIIKSSL---AAASNIPGPIGVAASGISGLSALFEGF 42 (44)
T ss_pred HHHHHHHHHHHHH---HHHhcCCCchhHHHHhHHHHHHHHHHh
Confidence 3566777777653 334444322133566777777777664
No 2
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=20.50 E-value=92 Score=18.05 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccCCCCCCCccchhhhhHHHHH
Q 026683 177 SNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSL 219 (235)
Q Consensus 177 ~~~~~l~lv~~~~D~~i~~~~l~~~~~~~~~~~vg~~G~iSsl 219 (235)
..|++.++++...- +.+.++-+-+....|+.|+.++++++
T Consensus 3 mWErVk~ilks~l~---~aS~iPGPVG~~asGi~gl~~l~~~~ 42 (44)
T 1nov_D 3 FWERVRSILKSGLN---FASTIPGPVGVAATGIKGIIETIGSL 42 (44)
T ss_pred HHHHHHHHHHHHHH---HHhcCCCchhHHHHhHHHHHHHHHHh
Confidence 35667777776633 33444221133456666766666654
No 3
>3bpo_A Interleukin 13; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 1ijz_A 1ik0_A 3g6d_A 3l5w_I 3l5x_A* 3l5y_A 1ga3_A
Probab=13.98 E-value=1.1e+02 Score=21.96 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=18.6
Q ss_pred hHHhHHHhhhHHHHHHHhhhcHHHHHHhh
Q 026683 45 TAQNVDKSTSLARKVFRLFKFVNDLHALI 73 (235)
Q Consensus 45 ~~~~l~~~ls~aRk~~Rl~k~l~~~~~~~ 73 (235)
.++-+..-+.-.|++||-|+|-+.|..+.
T Consensus 93 v~qfik~LL~~~r~~fR~g~f~~~~~~~~ 121 (127)
T 3bpo_A 93 VAQFVKDLLLHLKKLFREGQFNRNFESII 121 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC--------
T ss_pred HHHHHHHHHHHHHHHHccCchhcccceeE
Confidence 45678889999999999999988877653
No 4
>1kbh_A ACTR, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Homo sapiens} SCOP: a.153.1.1
Probab=13.25 E-value=1.8e+02 Score=17.10 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcccc--hHHHHHHHHH
Q 026683 8 RAELALVVLYLNKAE--ARDKICRAIQ 32 (235)
Q Consensus 8 ~~~l~~~~~~l~t~~--GRDK~~r~iQ 32 (235)
...++++..+|++++ |.+-+=|.+.
T Consensus 7 ~aLl~QL~~~L~~~d~~~LeEiDrALG 33 (47)
T 1kbh_A 7 RALLDQLHTLLSNTDATGLEEIDRALG 33 (47)
T ss_dssp HHHHHHHHHHTTSSCCTTHHHHHHHTT
T ss_pred HHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 568999999999888 8887777665
No 5
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=12.89 E-value=81 Score=24.56 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=22.8
Q ss_pred cchhhhhHHHHHHHHHHhCCCCccCCCC
Q 026683 208 RVTGAFGFVTSLISCYQLLPAPVKAKAP 235 (235)
Q Consensus 208 ~~vg~~G~iSsli~~y~~w~~~~k~~~~ 235 (235)
.++++.-+++-+++.|..|+...|++.|
T Consensus 158 ~vl~lSvvltl~la~~~~~~~~~~~~~~ 185 (188)
T 3vr8_C 158 LVLGLAALISLAVVVYPRWERHKKATLP 185 (188)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhccccCC
Confidence 4566666777789999999999998877
No 6
>1bde_A VPR protein; AIDS, HIV, viral protein, VPR fragment, helix; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1dsj_A
Probab=11.26 E-value=94 Score=17.21 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=14.5
Q ss_pred HhcccchHHHHHHHHHHHH
Q 026683 17 YLNKAEARDKICRAIQYGS 35 (235)
Q Consensus 17 ~l~t~~GRDK~~r~iQY~~ 35 (235)
|-+|.+|-+.+.|++|-..
T Consensus 2 yGDTw~GveaiiriLQq~L 20 (35)
T 1bde_A 2 YGDTWAGVEAIIRILQQLL 20 (35)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHH
Confidence 4567788899999988643
No 7
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=9.47 E-value=1.3e+02 Score=15.78 Aligned_cols=10 Identities=40% Similarity=0.893 Sum_probs=5.6
Q ss_pred hhhhHHHHHH
Q 026683 211 GAFGFVTSLI 220 (235)
Q Consensus 211 g~~G~iSsli 220 (235)
|++|.|++.|
T Consensus 1 GlFGAIAGfi 10 (30)
T 2kxa_A 1 GLFGAIAGFI 10 (30)
T ss_dssp CHHHHHHHHH
T ss_pred Ccchhhhhhh
Confidence 4566666554
No 8
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=9.23 E-value=1.9e+02 Score=23.15 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=24.6
Q ss_pred HHHHHHHH-HHhcccchHHHHHHHHHHHHHHhccC
Q 026683 8 RAELALVV-LYLNKAEARDKICRAIQYGSKFLSDG 41 (235)
Q Consensus 8 ~~~l~~~~-~~l~t~~GRDK~~r~iQY~~kll~~~ 41 (235)
++.++-++ .=++....-+|.+|++|+.+|+-...
T Consensus 39 rdi~eall~~~l~~~~~~~k~iri~QfLsRI~eG~ 73 (235)
T 3bu8_A 39 RDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGE 73 (235)
T ss_dssp HHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCcccccccchhHHHHHHHHHHHHcCC
Confidence 44444444 55566667789999999999998653
No 9
>3d8l_A ORF12; lactococcal phage P2, viral protein; 2.90A {Lactococcus phage SK1}
Probab=7.64 E-value=4.8e+02 Score=16.62 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhccCCcchHHhHHHhhhHHHHHHHh
Q 026683 24 RDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRL 62 (235)
Q Consensus 24 RDK~~r~iQY~~kll~~~~~~~~~~l~~~ls~aRk~~Rl 62 (235)
.--++.++||+.-+..... .+.+..+.+|+.|.-|-+
T Consensus 37 itdlmefvqyglylalfqd--nivkaksdfsdfrssfef 73 (91)
T 3d8l_A 37 ITDLMEFVQYGLYLALFQD--NIVKAKSDFSDFRSSFEF 73 (91)
T ss_dssp HHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHh--hhHhhhcchHHhHhhccc
Confidence 4567889999887755432 245667778887766654
No 10
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=7.63 E-value=2.7e+02 Score=17.48 Aligned_cols=28 Identities=29% Similarity=0.249 Sum_probs=17.8
Q ss_pred HHHHHHHHhcccchHH----HHHHHHHHHHHH
Q 026683 10 ELALVVLYLNKAEARD----KICRAIQYGSKF 37 (235)
Q Consensus 10 ~l~~~~~~l~t~~GRD----K~~r~iQY~~kl 37 (235)
=+.++.+||++.+|.| .=.|+++.....
T Consensus 27 C~~EV~rfLs~~eg~d~~d~~r~rLl~HL~~~ 58 (64)
T 2db7_A 27 CLAEVARYLSIIEGLDASDPLRVRLVSHLNNY 58 (64)
T ss_dssp HHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHHHH
Confidence 4566777888777766 455666655443
Done!