BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026685
         (235 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2B2T|A Chain A, Tandem Chromodomains Of Human Chd1 Complexed With Histone
           H3 Tail Containing Trimethyllysine 4 And
           Phosphothreonine 3
 pdb|2B2T|B Chain B, Tandem Chromodomains Of Human Chd1 Complexed With Histone
           H3 Tail Containing Trimethyllysine 4 And
           Phosphothreonine 3
          Length = 187

 Score = 29.3 bits (64), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 200 YCKWVVLPCNICFWHQLSWFVSIFWPACPEFFHRR 234
           YCKW  LP + C W   +     F     E+F R+
Sbjct: 152 YCKWQGLPYSECSWEDGALISKKFQAXIDEYFSRK 186


>pdb|2B2U|A Chain A, Tandem Chromodomains Of Human Chd1 Complexed With Histone
           H3 Tail Containing Trimethyllysine 4 And
           Dimethylarginine 2
 pdb|2B2U|B Chain B, Tandem Chromodomains Of Human Chd1 Complexed With Histone
           H3 Tail Containing Trimethyllysine 4 And
           Dimethylarginine 2
 pdb|2B2V|A Chain A, Crystal Structure Analysis Of Human Chd1 Chromodomains 1
           And 2 Bound To Histone H3 Resi 1-15 Mek4
 pdb|2B2V|B Chain B, Crystal Structure Analysis Of Human Chd1 Chromodomains 1
           And 2 Bound To Histone H3 Resi 1-15 Mek4
 pdb|2B2W|A Chain A, Tandem Chromodomains Of Human Chd1 Complexed With Histone
           H3 Tail Containing Trimethyllysine 4
 pdb|2B2W|B Chain B, Tandem Chromodomains Of Human Chd1 Complexed With Histone
           H3 Tail Containing Trimethyllysine 4
 pdb|2B2Y|A Chain A, Tandem Chromodomains Of Human Chd1
 pdb|2B2Y|B Chain B, Tandem Chromodomains Of Human Chd1
          Length = 187

 Score = 28.9 bits (63), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 200 YCKWVVLPCNICFWHQLSWFVSIFWPACPEFFHRR 234
           YCKW  LP + C W   +     F     E+F R+
Sbjct: 152 YCKWQGLPYSECSWEDGALISKKFQACIDEYFSRK 186


>pdb|2KJX|A Chain A, Solution Structure Of The Extracellular Domain Of Jtb
          Length = 65

 Score = 28.1 bits (61), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 42 LIEPYCLAQAQEPTTNITAPTTSEEGPVELPQSIFATTDEPSSLQVATSVLL 93
          L+E + +A+   P +N  A TT E GP    + I  ++ + +  +   S L+
Sbjct: 11 LVEEFVVAEECSPCSNFRAKTTPECGPTGYVEKITCSSSKRNEFKSCRSALM 62


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,911,792
Number of Sequences: 62578
Number of extensions: 185440
Number of successful extensions: 256
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 3
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)