BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026685
         (235 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q74JL8|KCY_LACJO Cytidylate kinase OS=Lactobacillus johnsonii (strain CNCM I-12250 /
           La1 / NCC 533) GN=cmk PE=3 SV=1
          Length = 230

 Score = 32.0 bits (71), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 53  EPTTNITAPTTSEEGPVELPQSIFATTDE-PSSLQVATSVLLTGAISVFLFRALRRRAKR 111
           E  + ++A  +  E  VEL + +    D       + T+VL    + +FL  ++  RAKR
Sbjct: 102 ENVSQVSALRSIREKMVELQREMAGKHDVIMDGRDIGTTVLPDAEVKIFLIASVASRAKR 161

Query: 112 AKELKFRSSGAKKSLKD 128
            + L F+  G  + LKD
Sbjct: 162 -RFLDFQEKGIHQDLKD 177


>sp|Q043U2|KCY_LACGA Cytidylate kinase OS=Lactobacillus gasseri (strain ATCC 33323 / DSM
           20243) GN=cmk PE=3 SV=1
          Length = 230

 Score = 32.0 bits (71), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 53  EPTTNITAPTTSEEGPVELPQSIFATTDE-PSSLQVATSVLLTGAISVFLFRALRRRAKR 111
           E  + ++A  +  E  VEL + +    D       + T+VL    + +FL  ++  RAKR
Sbjct: 102 ENVSQVSALKSIREKMVELQREMAGKHDVIMDGRDIGTTVLPDAEVKIFLIASVASRAKR 161

Query: 112 AKELKFRSSGAKKSLKD 128
            + L F+  G  + LKD
Sbjct: 162 -RFLDFQEKGIHQDLKD 177


>sp|Q1XDN0|IF2C_PORYE Translation initiation factor IF-2, chloroplastic OS=Porphyra
           yezoensis GN=infB PE=3 SV=1
          Length = 768

 Score = 31.2 bits (69), Expect = 7.4,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 22/121 (18%)

Query: 95  GAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSP---- 150
           G +++ L R  + + +  K+L    +  KKS++ + +    +  S+SI +  PP      
Sbjct: 125 GDLAISLMRPPKPKVEVVKKL----TSNKKSIRQKKVAVTPSQNSASIQSNSPPESISIT 180

Query: 151 ----VQALLGGLTAGVIAIILYKFTTTIEAALNR-------QTISDNFSVCASNN---NN 196
               +Q L   +      II Y F   I   +N+        +++DNF +   +N   NN
Sbjct: 181 NPLTIQELSKLICVQETDIIKYLFLKRISVTMNQTIDASIISSVADNFGIAVESNVKENN 240

Query: 197 N 197
           N
Sbjct: 241 N 241


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.133    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,772,947
Number of Sequences: 539616
Number of extensions: 3115979
Number of successful extensions: 10442
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 10429
Number of HSP's gapped (non-prelim): 25
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)