Query 026685
Match_columns 235
No_of_seqs 26 out of 28
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 11:17:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11282 DUF3082: Protein of u 99.8 5E-20 1.1E-24 141.0 0.5 63 147-209 1-69 (82)
2 COG1963 Uncharacterized protei 83.3 5.8 0.00013 34.5 7.2 24 147-170 127-150 (153)
3 smart00831 Cation_ATPase_N Cat 77.6 9 0.0002 26.2 5.5 34 125-158 10-44 (64)
4 TIGR03142 cytochro_ccmI cytoch 76.2 8.1 0.00018 30.5 5.5 22 149-170 92-113 (117)
5 PF06724 DUF1206: Domain of Un 69.8 39 0.00084 24.3 8.2 68 88-178 6-73 (73)
6 PF06305 DUF1049: Protein of u 66.3 8.5 0.00018 26.8 3.3 6 83-88 18-23 (68)
7 PF01102 Glycophorin_A: Glycop 65.7 5.1 0.00011 33.1 2.3 23 87-112 73-95 (122)
8 PRK13955 mscL large-conductanc 58.9 28 0.0006 29.2 5.5 25 83-107 68-92 (130)
9 PF11460 DUF3007: Protein of u 58.8 27 0.00059 28.6 5.3 47 90-136 40-100 (104)
10 PF14012 DUF4229: Protein of u 58.7 22 0.00047 26.4 4.4 32 86-117 35-66 (69)
11 PF03918 CcmH: Cytochrome C bi 56.3 3.7 8E-05 34.4 0.0 38 91-137 109-146 (148)
12 TIGR00220 mscL large conductan 55.5 35 0.00077 28.4 5.6 28 83-111 70-97 (127)
13 PF05454 DAG1: Dystroglycan (D 54.0 4.3 9.2E-05 37.8 0.0 46 85-133 153-201 (290)
14 PF00690 Cation_ATPase_N: Cati 53.5 30 0.00065 24.3 4.3 41 124-164 19-60 (69)
15 PF06295 DUF1043: Protein of u 50.4 17 0.00037 29.4 2.9 27 88-114 3-29 (128)
16 COG5500 Predicted integral mem 49.0 11 0.00024 32.7 1.7 66 150-215 6-82 (159)
17 PF10779 XhlA: Haemolysin XhlA 48.9 15 0.00033 26.8 2.2 17 151-167 54-70 (71)
18 COG1862 YajC Preprotein transl 48.8 24 0.00051 28.2 3.4 33 82-114 6-39 (97)
19 PF11821 DUF3341: Protein of u 47.5 37 0.00081 29.3 4.7 30 146-175 49-78 (173)
20 KOG1162 Predicted small molecu 47.4 5.2 0.00011 40.9 -0.6 70 141-215 217-288 (617)
21 PF03239 FTR1: Iron permease F 47.4 62 0.0013 29.4 6.3 29 146-174 165-193 (306)
22 PF05283 MGC-24: Multi-glycosy 44.9 18 0.00038 32.0 2.4 19 152-170 161-183 (186)
23 PF14163 SieB: Superinfection 43.1 37 0.00079 27.5 3.8 15 124-138 77-91 (151)
24 PRK13415 flagella biosynthesis 42.3 35 0.00076 31.0 3.9 30 84-113 68-97 (219)
25 PLN02777 photosystem I P subun 41.8 84 0.0018 27.8 6.0 45 153-206 95-140 (167)
26 PF04964 Flp_Fap: Flp/Fap pili 41.7 53 0.0011 22.6 3.9 30 151-180 12-41 (46)
27 PF04145 Ctr: Ctr copper trans 41.6 48 0.001 25.7 4.1 37 75-111 15-53 (144)
28 COG0109 CyoE Polyprenyltransfe 41.3 54 0.0012 31.1 5.1 59 118-176 66-124 (304)
29 COG4280 Predicted membrane pro 40.9 52 0.0011 30.4 4.8 28 82-110 63-90 (236)
30 PRK11677 hypothetical protein; 39.6 31 0.00067 28.9 2.9 27 88-114 7-33 (134)
31 COG3812 Uncharacterized protei 38.9 8.7 0.00019 34.2 -0.4 25 188-213 137-169 (193)
32 COG1422 Predicted membrane pro 38.8 41 0.00089 30.3 3.8 15 88-102 47-61 (201)
33 KOG4287 Pectin acetylesterase 38.7 8 0.00017 37.8 -0.7 46 111-168 148-193 (402)
34 PRK13954 mscL large-conductanc 37.7 75 0.0016 26.4 4.8 25 83-107 65-89 (119)
35 KOG2629 Peroxisomal membrane a 35.3 1.1E+02 0.0024 29.3 6.1 19 154-172 87-105 (300)
36 PF15086 UPF0542: Uncharacteri 34.8 90 0.0019 24.5 4.6 24 91-114 34-57 (74)
37 PRK05274 2-keto-3-deoxyglucona 34.4 34 0.00074 32.0 2.7 40 75-114 281-320 (326)
38 PF11862 DUF3382: Domain of un 33.9 1.8E+02 0.0039 22.5 6.2 22 91-112 46-67 (101)
39 PF07219 HemY_N: HemY protein 33.7 1.7E+02 0.0038 22.5 6.1 26 81-106 13-38 (108)
40 KOG1277 Endosomal membrane pro 33.5 40 0.00088 34.5 3.2 39 76-114 211-261 (593)
41 PF14316 DUF4381: Domain of un 33.5 1.2E+02 0.0025 24.6 5.3 22 89-110 26-47 (146)
42 PF00664 ABC_membrane: ABC tra 33.4 28 0.00062 26.8 1.7 21 94-114 150-170 (275)
43 PF06295 DUF1043: Protein of u 33.4 44 0.00096 27.0 2.9 20 153-172 2-21 (128)
44 PLN00028 nitrate transmembrane 32.3 24 0.00051 32.5 1.3 31 87-117 417-447 (476)
45 PF14241 DUF4341: Domain of un 32.3 40 0.00087 24.4 2.2 26 149-174 1-26 (62)
46 cd02437 CCC1_like_1 CCC1-relat 31.6 2.5E+02 0.0055 23.5 7.1 24 147-170 94-117 (175)
47 PF13038 DUF3899: Domain of un 31.1 36 0.00077 25.4 1.9 20 149-168 71-90 (92)
48 PRK13952 mscL large-conductanc 31.1 1E+02 0.0022 26.2 4.7 25 83-107 87-111 (142)
49 COG5505 Predicted integral mem 29.9 1.4E+02 0.003 29.4 6.0 94 68-180 142-236 (384)
50 PF01569 PAP2: PAP2 superfamil 29.8 29 0.00064 25.5 1.2 30 80-109 99-128 (129)
51 PRK06531 yajC preprotein trans 29.8 58 0.0013 26.6 3.0 18 97-114 15-32 (113)
52 PF13858 DUF4199: Protein of u 29.4 2.9E+02 0.0062 21.9 8.1 24 106-129 97-120 (163)
53 PF08369 PCP_red: Proto-chloro 28.8 96 0.0021 21.3 3.5 29 105-134 16-44 (45)
54 PF10292 7TM_GPCR_Srab: Serpen 28.7 2.7E+02 0.0058 25.0 7.2 73 81-161 178-251 (324)
55 PRK13953 mscL large-conductanc 27.9 1.3E+02 0.0029 25.1 4.8 25 83-107 68-92 (125)
56 COG2851 CitM H+/citrate sympor 27.7 62 0.0013 32.2 3.3 38 83-121 179-216 (433)
57 COG1585 Membrane protein impli 27.6 39 0.00084 28.1 1.7 34 81-114 45-78 (140)
58 PRK05585 yajC preprotein trans 27.1 72 0.0016 25.5 3.0 14 101-114 35-48 (106)
59 PRK11114 cellulose synthase re 26.8 72 0.0016 32.7 3.7 26 87-112 728-753 (756)
60 PF04695 Pex14_N: Peroxisomal 26.7 63 0.0014 26.3 2.7 16 123-138 32-47 (136)
61 PRK12460 2-keto-3-deoxyglucona 26.6 67 0.0014 30.5 3.2 37 76-112 274-310 (312)
62 cd03212 GST_C_Metaxin1_3 GST_C 26.6 2.8E+02 0.006 22.2 6.3 18 146-163 89-106 (137)
63 COG3088 CcmH Uncharacterized p 26.4 84 0.0018 27.4 3.5 54 75-138 93-150 (153)
64 TIGR00739 yajC preprotein tran 26.0 65 0.0014 24.6 2.5 16 100-115 19-34 (84)
65 TIGR00145 FTR1 family protein. 25.7 3.4E+02 0.0074 25.1 7.5 21 153-173 157-177 (283)
66 COG1970 MscL Large-conductance 25.3 2.2E+02 0.0048 24.3 5.7 56 81-138 70-127 (130)
67 PF13268 DUF4059: Protein of u 25.2 65 0.0014 25.1 2.4 22 93-114 21-42 (72)
68 PF03616 Glt_symporter: Sodium 24.5 3.2E+02 0.0069 25.8 7.2 21 90-110 167-187 (368)
69 PF03812 KdgT: 2-keto-3-deoxyg 24.4 69 0.0015 30.6 2.9 35 76-110 280-314 (314)
70 cd03211 GST_C_Metaxin2 GST_C f 24.3 2.7E+02 0.0058 21.8 5.7 18 146-163 82-99 (126)
71 PF03219 TLC: TLC ATP/ADP tran 23.9 1.9E+02 0.0041 28.5 5.8 32 83-114 220-252 (491)
72 PRK05886 yajC preprotein trans 23.5 96 0.0021 25.3 3.2 10 105-114 22-31 (109)
73 PF06679 DUF1180: Protein of u 23.1 58 0.0013 28.2 1.9 30 84-113 93-125 (163)
74 PF06738 DUF1212: Protein of u 22.9 1.6E+02 0.0034 24.2 4.3 39 124-166 81-120 (193)
75 PF02681 DUF212: Divergent PAP 22.8 1.5E+02 0.0032 25.2 4.3 18 147-164 124-141 (141)
76 PRK06287 cobalt transport prot 22.8 76 0.0016 25.4 2.4 26 83-108 79-104 (107)
77 PRK12772 bifunctional flagella 22.7 8.3E+02 0.018 24.9 10.4 94 83-178 214-321 (609)
78 PF03899 ATP_synt_I: ATP synth 22.6 1.7E+02 0.0037 20.9 4.1 30 85-114 23-52 (100)
79 PF14264 Glucos_trans_II: Gluc 22.3 4E+02 0.0086 23.4 7.0 30 156-185 175-204 (319)
80 COG3086 RseC Positive regulato 21.9 1E+02 0.0022 26.9 3.2 30 85-114 104-133 (150)
81 smart00786 SHR3_chaperone ER m 21.6 1.5E+02 0.0032 26.7 4.2 22 87-108 138-159 (196)
82 PF06379 RhaT: L-rhamnose-prot 21.4 2.3E+02 0.0049 27.5 5.6 24 91-114 136-159 (344)
83 PF04246 RseC_MucC: Positive r 21.3 94 0.002 24.6 2.7 28 88-115 100-127 (135)
84 PF07589 VPEP: PEP-CTERM motif 21.2 82 0.0018 19.5 1.8 18 80-101 3-20 (25)
85 PHA02975 hypothetical protein; 21.0 3.4E+02 0.0073 21.1 5.5 46 124-169 17-62 (69)
86 PF02990 EMP70: Endomembrane p 21.0 1.1E+02 0.0024 29.9 3.6 25 90-114 210-234 (521)
87 PF13807 GNVR: G-rich domain o 20.7 3.4E+02 0.0074 19.8 6.3 22 147-168 56-77 (82)
88 PF10265 DUF2217: Uncharacteri 20.5 68 0.0015 32.4 2.1 32 82-113 12-43 (514)
89 PRK04307 putative disulfide ox 20.3 1.6E+02 0.0035 26.5 4.2 21 87-107 194-214 (218)
90 PF11346 DUF3149: Protein of u 20.1 1.5E+02 0.0032 20.7 3.1 31 83-113 11-41 (42)
91 PF02699 YajC: Preprotein tran 20.0 1.3E+02 0.0029 22.6 3.1 6 103-108 21-26 (82)
No 1
>PF11282 DUF3082: Protein of unknown function (DUF3082); InterPro: IPR021434 This family of proteins has no known function.
Probab=99.77 E-value=5e-20 Score=141.02 Aligned_cols=63 Identities=27% Similarity=0.365 Sum_probs=60.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC-CCceeeeeeec-----cCceeeeeeccccc
Q 026685 147 PPSPVQALLGGLTAGVIAIILYKFTTTIEAALNRQTIS-DNFSVCASNNN-----NNKDYCKWVVLPCN 209 (235)
Q Consensus 147 ppSP~QallGav~AGvIA~iLYkFTT~IeaSf~rQ~lp-DnysaRnItIt-----~GL~YLatfV~~an 209 (235)
+|||+|||+||++||+||+++|+||++|+++|++||++ |||+++||+++ +|+|||+||+|+.|
T Consensus 1 ~~~Pl~~l~Ga~~ag~la~~ly~lt~~i~~~fa~~p~~s~~~~a~~Ia~~vRTlv~Gl~~LaTfiF~~~ 69 (82)
T PF11282_consen 1 KPTPLRCLSGALIAGGLAYGLYFLTTSIAASFASKPIHSSNYIAQNIASAVRTLVVGLCYLATFIFGFV 69 (82)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999 99999999998 79999999999877
No 2
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.32 E-value=5.8 Score=34.46 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=22.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH
Q 026685 147 PPSPVQALLGGLTAGVIAIILYKF 170 (235)
Q Consensus 147 ppSP~QallGav~AGvIA~iLYkF 170 (235)
-=+|+|.|.|.+++.+|++++|.|
T Consensus 127 GH~p~eV~~G~~lGI~i~~i~~~~ 150 (153)
T COG1963 127 GHTPLEVFAGLLLGILIAWIFYAF 150 (153)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999976
No 3
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=77.61 E-value=9 Score=26.22 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=26.1
Q ss_pred CchH-HHHHHHHhcCCCCCCCCCCCChHHHHHHHH
Q 026685 125 SLKD-EALDNLKALGSSSIDAKGPPSPVQALLGGL 158 (235)
Q Consensus 125 slkE-Ea~e~lka~~~~~~~~~~ppSP~QallGav 158 (235)
.+++ |+.+.++.-+.+.+..+++.|.++.|+..+
T Consensus 10 GLs~~~v~~r~~~~G~N~l~~~~~~s~~~~~l~~~ 44 (64)
T smart00831 10 GLSSEEAARRLERYGPNELPPPKKRSPLLRFLRQF 44 (64)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHH
Confidence 5554 446666777888888888899999999886
No 4
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=76.16 E-value=8.1 Score=30.46 Aligned_cols=22 Identities=32% Similarity=0.243 Sum_probs=16.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 026685 149 SPVQALLGGLTAGVIAIILYKF 170 (235)
Q Consensus 149 SP~QallGav~AGvIA~iLYkF 170 (235)
+.+-+++|++.--++|++||.-
T Consensus 92 ~~~~~~~~~~~lp~~a~~lY~~ 113 (117)
T TIGR03142 92 GRLAALVVVLLLPVLALGLYLK 113 (117)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888889999964
No 5
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=69.83 E-value=39 Score=24.33 Aligned_cols=68 Identities=21% Similarity=0.287 Sum_probs=45.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCchHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 026685 88 ATSVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIIL 167 (235)
Q Consensus 88 A~svllTGaisvFlfRslrRRakrAKE~R~rSsg~~kslkEEa~e~lka~~~~~~~~~~ppSP~QallGav~AGvIA~iL 167 (235)
+-++++ +.++++.++..-. .+ +.+++-.+++.+.+... .-=+.++|.+-.|++++.+
T Consensus 6 ~~givy-~~lg~~a~~~a~~-~~----------~~~~~~~~~~~~~l~~~-----------p~G~~ll~~vg~gli~~gi 62 (73)
T PF06724_consen 6 ARGIVY-GALGYLALQAALG-GG----------GSSDQGSQGALAWLLEQ-----------PFGRWLLGAVGLGLIGYGI 62 (73)
T ss_pred HHHHHH-HHHHHHHHHHHHh-cC----------CCCCCCHHHHHHHHHhC-----------CCcHHHHHHHHHHHHHHHH
Confidence 345555 7788888776543 11 22345566666666421 1347899999999999999
Q ss_pred HHHHHHHHHHh
Q 026685 168 YKFTTTIEAAL 178 (235)
Q Consensus 168 YkFTT~IeaSf 178 (235)
|++-.++-+.|
T Consensus 63 ~~~~~a~~~~f 73 (73)
T PF06724_consen 63 WQFVKAVYRRF 73 (73)
T ss_pred HHHHHHHHhhC
Confidence 99987776543
No 6
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=66.33 E-value=8.5 Score=26.82 Aligned_cols=6 Identities=17% Similarity=0.108 Sum_probs=3.2
Q ss_pred Chhhhh
Q 026685 83 SSLQVA 88 (235)
Q Consensus 83 spLQvA 88 (235)
.|+-+.
T Consensus 18 ~pl~l~ 23 (68)
T PF06305_consen 18 LPLGLL 23 (68)
T ss_pred chHHHH
Confidence 565543
No 7
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=65.70 E-value=5.1 Score=33.10 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=9.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh
Q 026685 87 VATSVLLTGAISVFLFRALRRRAKRA 112 (235)
Q Consensus 87 vA~svllTGaisvFlfRslrRRakrA 112 (235)
|.+||++++++.+|+ +|||.||.
T Consensus 73 v~aGvIg~Illi~y~---irR~~Kk~ 95 (122)
T PF01102_consen 73 VMAGVIGIILLISYC---IRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHH---HHHHS---
T ss_pred HHHHHHHHHHHHHHH---HHHHhccC
Confidence 344555544444444 45555553
No 8
>PRK13955 mscL large-conductance mechanosensitive channel; Provisional
Probab=58.93 E-value=28 Score=29.23 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=20.4
Q ss_pred ChhhhhhhhHHHHHHHHHHHHHHHH
Q 026685 83 SSLQVATSVLLTGAISVFLFRALRR 107 (235)
Q Consensus 83 spLQvA~svllTGaisvFlfRslrR 107 (235)
+-|+....+++++++.+++++.+.|
T Consensus 68 ~fl~avInFlIiA~vvF~ivk~~nk 92 (130)
T PRK13955 68 NFIQTIFDFLIIAASIFMFVKVFNK 92 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688889999999998888877664
No 9
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=58.76 E-value=27 Score=28.63 Aligned_cols=47 Identities=28% Similarity=0.444 Sum_probs=24.4
Q ss_pred hhHHHHHHHH---HHHHHH---------HHHHHHhhhhhhhccCCC--CCchHHHHHHHHh
Q 026685 90 SVLLTGAISV---FLFRAL---------RRRAKRAKELKFRSSGAK--KSLKDEALDNLKA 136 (235)
Q Consensus 90 svllTGaisv---FlfRsl---------rRRakrAKE~R~rSsg~~--kslkEEa~e~lka 136 (235)
++++.|.++| |+||++ |||.++|=+--..-..-| +++++|++++|.+
T Consensus 40 ~~lv~glvgW~~sYlfRV~t~~MTy~~Q~k~Ye~a~~~~~~~~lqkRle~l~~eE~~~L~~ 100 (104)
T PF11460_consen 40 ALLVLGLVGWVSSYLFRVVTGKMTYMQQRKDYEEAVDQLTNEELQKRLEELSPEELEALQA 100 (104)
T ss_pred HHHHHHHHHHHhHHHhhhccCCCcHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHH
Confidence 3444455555 889987 456666552111100101 2677777777653
No 10
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=58.69 E-value=22 Score=26.44 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=26.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 026685 86 QVATSVLLTGAISVFLFRALRRRAKRAKELKF 117 (235)
Q Consensus 86 QvA~svllTGaisvFlfRslrRRakrAKE~R~ 117 (235)
=...+++..+.+|.++||-.|+|+...=+.+.
T Consensus 35 ~~l~A~vis~~lS~~ll~~~R~~~~~~ia~~~ 66 (69)
T PF14012_consen 35 AALLALVISMPLSYVLLRRLRDRASADIAARD 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578888999999999999999988766554
No 11
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=56.32 E-value=3.7 Score=34.38 Aligned_cols=38 Identities=39% Similarity=0.502 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCchHHHHHHHHhc
Q 026685 91 VLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKAL 137 (235)
Q Consensus 91 vllTGaisvFlfRslrRRakrAKE~R~rSsg~~kslkEEa~e~lka~ 137 (235)
+++.++..++++|.+|||-+++.+ ..+.+|+++.+++.
T Consensus 109 ~~~l~~g~~~~~~~~rr~~~~~~~---------~~ls~~e~~rl~~l 146 (148)
T PF03918_consen 109 FLLLLLGGALLFRRLRRWRRRAAQ---------EELSEEERRRLDAL 146 (148)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcccCCCC---------CCCCHHHHHHHHHH
Confidence 445567777788889888887766 45666666666543
No 12
>TIGR00220 mscL large conductance mechanosensitive channel protein. Protein encodes a channel which opens in response to a membrane stretch force. Probably serves as an osmotic gauge. Carboxy terminus tends to be more divergent across species with a high degree of sequence conservation found at the N-terminus.
Probab=55.50 E-value=35 Score=28.44 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=21.1
Q ss_pred ChhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 026685 83 SSLQVATSVLLTGAISVFLFRALRRRAKR 111 (235)
Q Consensus 83 spLQvA~svllTGaisvFlfRslrRRakr 111 (235)
+-++....+++++++.+++.+.+. |.||
T Consensus 70 ~fl~avInFlIiA~vvf~~vk~~~-k~~~ 97 (127)
T TIGR00220 70 EFIQNIINFLIIAFAIFMIIKAIN-KLRR 97 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 457888888999998888888775 3444
No 13
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=53.98 E-value=4.3 Score=37.76 Aligned_cols=46 Identities=24% Similarity=0.486 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhh---hhhhhccCCCCCchHHHHHH
Q 026685 85 LQVATSVLLTGAISVFLFRALRRRAKRAK---ELKFRSSGAKKSLKDEALDN 133 (235)
Q Consensus 85 LQvA~svllTGaisvFlfRslrRRakrAK---E~R~rSsg~~kslkEEa~e~ 133 (235)
.=+++-+|+.|+|+..+.| |||..|.+ +-.|++-| ..=+..+++|+
T Consensus 153 VVI~~iLLIA~iIa~icyr--rkR~GK~~~ee~~~f~~KG-iPvIF~dElee 201 (290)
T PF05454_consen 153 VVIAAILLIAGIIACICYR--RKRKGKMSLEEQKTFISKG-IPVIFQDELEE 201 (290)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhh--hhhccccccchhHHHHhcC-Cceeccccccc
Confidence 3456667778899999999 88888877 33466655 23344455555
No 14
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=53.53 E-value=30 Score=24.28 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=31.1
Q ss_pred CCch-HHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 026685 124 KSLK-DEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIA 164 (235)
Q Consensus 124 kslk-EEa~e~lka~~~~~~~~~~ppSP~QallGav~AGvIA 164 (235)
..+. +|+.+.++..|.+.+..++++|.++-|+..+.-..+-
T Consensus 19 ~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~f~~~~~~ 60 (69)
T PF00690_consen 19 QGLSSEEVEERRKKYGPNELPEPKKKSLWRIFLKQFKNPFII 60 (69)
T ss_dssp SBBTHHHHHHHHHHHSSSSTTTTTSSSHHHHHHHHTTSHHHH
T ss_pred CCCCHHHHHHHHHhcccccccccccCcHHHHHHHHHHhHHHH
Confidence 3444 4557778888999999999999999999887544433
No 15
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=50.39 E-value=17 Score=29.40 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=21.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 026685 88 ATSVLLTGAISVFLFRALRRRAKRAKE 114 (235)
Q Consensus 88 A~svllTGaisvFlfRslrRRakrAKE 114 (235)
..++++.++|++++.|+..+..++.++
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~~~~q~~ 29 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSNQQKQAK 29 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHH
Confidence 567778778999999999888766544
No 16
>COG5500 Predicted integral membrane protein [Function unknown]
Probab=48.96 E-value=11 Score=32.69 Aligned_cols=66 Identities=21% Similarity=0.364 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC---ceeeeeeecc--------Cceeeeeeccccceeeecc
Q 026685 150 PVQALLGGLTAGVIAIILYKFTTTIEAALNRQTISDN---FSVCASNNNN--------NKDYCKWVVLPCNICFWHQ 215 (235)
Q Consensus 150 P~QallGav~AGvIA~iLYkFTT~IeaSf~rQ~lpDn---ysaRnItIt~--------GL~YLatfV~~an~~~~~~ 215 (235)
|.-++..++-.|+.|=+.+-|++-|-+.++|-|.+.+ ..+.||+|.| |-.-|--..+.+-+.=||+
T Consensus 6 paL~~~AaiGsGlmaGvFFaFS~fvM~ALaRLpp~QGiAAMnsINitvinPlFmtAf~GTgllcliLl~~a~~gW~~ 82 (159)
T COG5500 6 PALELFAAIGSGLMAGVFFAFSTFVMNALARLPPTQGIAAMNSINITVINPLFMTAFLGTGLLCLILLISALLGWHQ 82 (159)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHhcCCCcchhhHhheeeEEEeChHHHHHHHhhhHHHHHHHHHHHhccCC
Confidence 4556777888888888999999999999999988854 4567788774 2222222344455555765
No 17
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=48.91 E-value=15 Score=26.80 Aligned_cols=17 Identities=18% Similarity=0.589 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026685 151 VQALLGGLTAGVIAIIL 167 (235)
Q Consensus 151 ~QallGav~AGvIA~iL 167 (235)
+..++||+++++++++.
T Consensus 54 ~r~iiGaiI~~i~~~i~ 70 (71)
T PF10779_consen 54 WRTIIGAIITAIIYLII 70 (71)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45667777777766654
No 18
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=48.77 E-value=24 Score=28.22 Aligned_cols=33 Identities=33% Similarity=0.415 Sum_probs=21.1
Q ss_pred CChhhhhhhhHHHHHHHHH-HHHHHHHHHHHhhh
Q 026685 82 PSSLQVATSVLLTGAISVF-LFRALRRRAKRAKE 114 (235)
Q Consensus 82 ~spLQvA~svllTGaisvF-lfRslrRRakrAKE 114 (235)
++.++...-+++..++.+| +.|--|||.|+-+|
T Consensus 6 ~~~~~~ll~~vl~~~ifyFli~RPQrKr~K~~~~ 39 (97)
T COG1862 6 GSGLVLLLPLVLIFAIFYFLIIRPQRKRMKEHQE 39 (97)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 4567777777776666666 45666666665554
No 19
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=47.48 E-value=37 Score=29.34 Aligned_cols=30 Identities=33% Similarity=0.464 Sum_probs=26.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026685 146 GPPSPVQALLGGLTAGVIAIILYKFTTTIE 175 (235)
Q Consensus 146 ~ppSP~QallGav~AGvIA~iLYkFTT~Ie 175 (235)
+..=|+=+|+||++++..++.|-+++.+++
T Consensus 49 ~s~l~~~~l~~Gl~G~~~~~~l~~~t~~~d 78 (173)
T PF11821_consen 49 RSRLPWIALVGGLTGFATAFLLQWYTNAVD 78 (173)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345688999999999999999999999886
No 20
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.44 E-value=5.2 Score=40.86 Aligned_cols=70 Identities=13% Similarity=0.170 Sum_probs=45.5
Q ss_pred CCCCCCCCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccccC-CCceeeeeeeccCceeeeeeccccceeeecc
Q 026685 141 SIDAKGPPSPVQA-LLGGLTAGVIAIILYKFTTTIEAALNRQTIS-DNFSVCASNNNNNKDYCKWVVLPCNICFWHQ 215 (235)
Q Consensus 141 ~~~~~~ppSP~Qa-llGav~AGvIA~iLYkFTT~IeaSf~rQ~lp-DnysaRnItIt~GL~YLatfV~~an~~~~~~ 215 (235)
+.+++-++|+.-. ++|..++.++|+++--.+.+|.++ +..... -=+..+. =|+--|.-|.|++|+++|.+
T Consensus 217 ~~~e~h~~~~~~~f~~g~~~~l~val~~~~~~~~~~~~-~~~~~~~~~~~l~~----~~~v~l~~fl~~~niy~W~~ 288 (617)
T KOG1162|consen 217 KLKEKHRPTFSTGFFVGCGIGLSVALVALIYLRNILQS-EQRFYMETMFPLYG----FGLVVLHKFLYNVNIYEWSR 288 (617)
T ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHH----HHHHHHHHHHhcCchHHHHH
Confidence 3455556766554 567778888888888888888877 321111 1111111 36677778899999999975
No 21
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=47.38 E-value=62 Score=29.41 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=23.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 026685 146 GPPSPVQALLGGLTAGVIAIILYKFTTTI 174 (235)
Q Consensus 146 ~ppSP~QallGav~AGvIA~iLYkFTT~I 174 (235)
.+.-+.-+..|.+.|.++++++|+...++
T Consensus 165 ~~~~~~g~~~G~~~a~~~~~~~~~~~~~i 193 (306)
T PF03239_consen 165 AASILLGAILGIAAAVVLGWLLYRGLIRI 193 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667788889999999999999987665
No 22
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=44.91 E-value=18 Score=31.95 Aligned_cols=19 Identities=42% Similarity=0.954 Sum_probs=13.8
Q ss_pred HHHHHHHHH--H--HHHHHHHHH
Q 026685 152 QALLGGLTA--G--VIAIILYKF 170 (235)
Q Consensus 152 QallGav~A--G--vIA~iLYkF 170 (235)
-+|+|||+= | .|.|.||||
T Consensus 161 ~SFiGGIVL~LGv~aI~ff~~KF 183 (186)
T PF05283_consen 161 ASFIGGIVLTLGVLAIIFFLYKF 183 (186)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhh
Confidence 479999863 3 466778988
No 23
>PF14163 SieB: Superinfection exclusion protein B
Probab=43.06 E-value=37 Score=27.48 Aligned_cols=15 Identities=27% Similarity=0.226 Sum_probs=9.9
Q ss_pred CCchHHHHHHHHhcC
Q 026685 124 KSLKDEALDNLKALG 138 (235)
Q Consensus 124 kslkEEa~e~lka~~ 138 (235)
++++++++.=|+..-
T Consensus 77 ~~Lt~~EkavL~~~~ 91 (151)
T PF14163_consen 77 NSLTPEEKAVLREFY 91 (151)
T ss_pred HhCCHHHHHHHHHHH
Confidence 477777766666554
No 24
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=42.34 E-value=35 Score=31.02 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=25.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 026685 84 SLQVATSVLLTGAISVFLFRALRRRAKRAK 113 (235)
Q Consensus 84 pLQvA~svllTGaisvFlfRslrRRakrAK 113 (235)
-+|+..++++..+.++++.|.+.||.+-.+
T Consensus 68 l~qmi~aL~~VI~Liy~l~rwL~rR~~~~~ 97 (219)
T PRK13415 68 FVKLIGATLFVIFLIYALVKWLNKRNRLLK 97 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 689999999988888888999999977653
No 25
>PLN02777 photosystem I P subunit (PSI-P)
Probab=41.85 E-value=84 Score=27.77 Aligned_cols=45 Identities=20% Similarity=0.278 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccC-CCceeeeeeeccCceeeeeecc
Q 026685 153 ALLGGLTAGVIAIILYKFTTTIEAALNRQTIS-DNFSVCASNNNNNKDYCKWVVL 206 (235)
Q Consensus 153 allGav~AGvIA~iLYkFTT~IeaSf~rQ~lp-DnysaRnItIt~GL~YLatfV~ 206 (235)
+++|-+.||++++. ...+|=+.+|.=||= +=+ =..|+.|..||+|
T Consensus 95 av~~l~~aaiVal~---v~~~VL~AId~lPLlP~lL------ELVGigYs~WF~y 140 (167)
T PLN02777 95 AVSSLAFAGVVALW---GSAGMISAIDRLPLVPGVL------ELVGIGYTGWFAY 140 (167)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHhccccccchH------HHhhhhhhhhhhh
Confidence 45677777777665 456677777776652 211 1269999999998
No 26
>PF04964 Flp_Fap: Flp/Fap pilin component; InterPro: IPR007047 This entry is for the fimbriae associated protein Flp/Fap pilin component.
Probab=41.65 E-value=53 Score=22.61 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026685 151 VQALLGGLTAGVIAIILYKFTTTIEAALNR 180 (235)
Q Consensus 151 ~QallGav~AGvIA~iLYkFTT~IeaSf~r 180 (235)
.=++++++++.++...+-.+.++|...|+.
T Consensus 12 EYali~alia~~ii~~~~~~g~~~~~~f~~ 41 (46)
T PF04964_consen 12 EYALIAALIAVAIIAAVTNLGTALNTAFND 41 (46)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 457899999999988888999998887764
No 27
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=41.64 E-value=48 Score=25.66 Aligned_cols=37 Identities=27% Similarity=0.342 Sum_probs=12.6
Q ss_pred cccCCCCCChhhhhhhhHHHHHHHHHH--HHHHHHHHHH
Q 026685 75 IFATTDEPSSLQVATSVLLTGAISVFL--FRALRRRAKR 111 (235)
Q Consensus 75 ~~~~~de~spLQvA~svllTGaisvFl--fRslrRRakr 111 (235)
+|..=.--|+-|-+++.+...+++++. ++.+|+|..+
T Consensus 15 LF~~W~~~s~~~~~~sci~~f~lav~~e~L~~~r~~~~~ 53 (144)
T PF04145_consen 15 LFKSWKPSSAGAYVGSCIGVFLLAVLYEFLKALRRRLER 53 (144)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTT----------
T ss_pred EeCCcEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343334447778888887777777663 5666665544
No 28
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=41.31 E-value=54 Score=31.09 Aligned_cols=59 Identities=29% Similarity=0.266 Sum_probs=43.9
Q ss_pred hccCCCCCchHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026685 118 RSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTTIEA 176 (235)
Q Consensus 118 rSsg~~kslkEEa~e~lka~~~~~~~~~~ppSP~QallGav~AGvIA~iLYkFTT~Iea 176 (235)
+|+++=+..-|+|.|.++.--..+.-.+...+|.++|.-|+.=|+.++.+-.|.++.-+
T Consensus 66 ~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~la 124 (304)
T COG0109 66 GGAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLA 124 (304)
T ss_pred HHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444467788888888766666666667899999999999999999887755555433
No 29
>COG4280 Predicted membrane protein [Function unknown]
Probab=40.88 E-value=52 Score=30.40 Aligned_cols=28 Identities=29% Similarity=0.252 Sum_probs=20.5
Q ss_pred CChhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 026685 82 PSSLQVATSVLLTGAISVFLFRALRRRAK 110 (235)
Q Consensus 82 ~spLQvA~svllTGaisvFlfRslrRRak 110 (235)
-+++|.+.||++ -..++=..|+-+||.+
T Consensus 63 ln~lqiv~gvLL-llFG~rw~Rsavrr~a 90 (236)
T COG4280 63 LNYLQIVSGVLL-LLFGYRWIRSAVRRFA 90 (236)
T ss_pred chHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 378999999998 4555556677777765
No 30
>PRK11677 hypothetical protein; Provisional
Probab=39.60 E-value=31 Score=28.93 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=19.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 026685 88 ATSVLLTGAISVFLFRALRRRAKRAKE 114 (235)
Q Consensus 88 A~svllTGaisvFlfRslrRRakrAKE 114 (235)
..++++.++|++|+.|.+.+..++.++
T Consensus 7 ~i~livG~iiG~~~~R~~~~~~~~q~~ 33 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRFGNRKLRQQQA 33 (134)
T ss_pred HHHHHHHHHHHHHHHhhccchhhHHHH
Confidence 466777778889999987766554443
No 31
>COG3812 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.93 E-value=8.7 Score=34.17 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=20.5
Q ss_pred eeeeeeec--------cCceeeeeeccccceeee
Q 026685 188 SVCASNNN--------NNKDYCKWVVLPCNICFW 213 (235)
Q Consensus 188 saRnItIt--------~GL~YLatfV~~an~~~~ 213 (235)
.-|+|+.. +|++||--|++| ||||-
T Consensus 137 edr~itLk~~g~e~~~~Gl~yl~g~alP-NfyFH 169 (193)
T COG3812 137 EDRVITLKLRGRETTFAGLDYLLGFALP-NFYFH 169 (193)
T ss_pred ccceeEEEecCceeeechHHHHHhhccc-ceeee
Confidence 45788776 699999999997 88874
No 32
>COG1422 Predicted membrane protein [Function unknown]
Probab=38.76 E-value=41 Score=30.31 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=6.8
Q ss_pred hhhhHHHHHHHHHHH
Q 026685 88 ATSVLLTGAISVFLF 102 (235)
Q Consensus 88 A~svllTGaisvFlf 102 (235)
+.+++++|+|.=+++
T Consensus 47 ~lvilV~avi~gl~~ 61 (201)
T COG1422 47 HLVILVAAVITGLYI 61 (201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555444444443
No 33
>KOG4287 consensus Pectin acetylesterase and similar proteins [Cell wall/membrane/envelope biogenesis]
Probab=38.68 E-value=8 Score=37.84 Aligned_cols=46 Identities=39% Similarity=0.484 Sum_probs=33.8
Q ss_pred HhhhhhhhccCCCCCchHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 026685 111 RAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILY 168 (235)
Q Consensus 111 rAKE~R~rSsg~~kslkEEa~e~lka~~~~~~~~~~ppSP~QallGav~AGvIA~iLY 168 (235)
-+|++.||+ +.+=++.+|+|++++ ---+.||++.|-.||++|.+|-
T Consensus 148 ~~t~l~fRG----~rIw~av~~eLl~kG--------ms~Ak~alLsGcSAGGLa~iLh 193 (402)
T KOG4287|consen 148 NATQLQFRG----ARIWLAVMDELLAKG--------MSNAKQALLSGCSAGGLASILH 193 (402)
T ss_pred chhhhhhhH----HHHHHHHHHHHHHhh--------hhHHHHHHhhcCCccchhheee
Confidence 344555552 446677888888887 2346799999999999999984
No 34
>PRK13954 mscL large-conductance mechanosensitive channel; Provisional
Probab=37.73 E-value=75 Score=26.40 Aligned_cols=25 Identities=4% Similarity=0.056 Sum_probs=20.4
Q ss_pred ChhhhhhhhHHHHHHHHHHHHHHHH
Q 026685 83 SSLQVATSVLLTGAISVFLFRALRR 107 (235)
Q Consensus 83 spLQvA~svllTGaisvFlfRslrR 107 (235)
.-+|.....++++++.+++++.+.|
T Consensus 65 ~fl~avinFlIiA~vvF~~vk~~~k 89 (119)
T PRK13954 65 LFIQSVIDFIIIAFALFIFVKIANT 89 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999988888887765
No 35
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.29 E-value=1.1e+02 Score=29.26 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026685 154 LLGGLTAGVIAIILYKFTT 172 (235)
Q Consensus 154 llGav~AGvIA~iLYkFTT 172 (235)
|+-|++.++|+|.+|.|.-
T Consensus 87 ~vmAvi~aGi~y~~y~~~K 105 (300)
T KOG2629|consen 87 FVMAVILAGIAYAAYRFVK 105 (300)
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 4447777779999999864
No 36
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=34.78 E-value=90 Score=24.47 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 026685 91 VLLTGAISVFLFRALRRRAKRAKE 114 (235)
Q Consensus 91 vllTGaisvFlfRslrRRakrAKE 114 (235)
++++|+++|.|.+-+.|+-++.|.
T Consensus 34 fiisa~lSwkLaK~ie~~ere~K~ 57 (74)
T PF15086_consen 34 FIISAVLSWKLAKAIEKEEREKKK 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999988877765
No 37
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=34.44 E-value=34 Score=32.04 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=33.3
Q ss_pred cccCCCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 026685 75 IFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAKE 114 (235)
Q Consensus 75 ~~~~~de~spLQvA~svllTGaisvFlfRslrRRakrAKE 114 (235)
.+...++.+..|||++|++|.++.=++...+-||.++.+.
T Consensus 281 ~~~~~~~~at~~VA~~vivt~il~P~l~~~~~k~~~~~~~ 320 (326)
T PRK05274 281 SFAPFAPAATAQVAAAVIVTAILAPILTAWWSKRVGKRAA 320 (326)
T ss_pred ccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4456788899999999999999999999988888876443
No 38
>PF11862 DUF3382: Domain of unknown function (DUF3382); InterPro: IPR021807 This entry represents the N-terminal domain of the LivHM type high-affinity branched-chain amino acid transport system permease proteins. The domain is about 100 amino acids in length, and is found associated with PF02653 from PFAM.
Probab=33.90 E-value=1.8e+02 Score=22.54 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 026685 91 VLLTGAISVFLFRALRRRAKRA 112 (235)
Q Consensus 91 vllTGaisvFlfRslrRRakrA 112 (235)
.+..+++.+|++.++|.+..+.
T Consensus 46 ~V~~~~~~~Fl~qL~r~~~~~~ 67 (101)
T PF11862_consen 46 WVAVAAAGRFLFQLFRPWLARR 67 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4455899999999998887743
No 39
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=33.75 E-value=1.7e+02 Score=22.48 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=15.4
Q ss_pred CCChhhhhhhhHHHHHHHHHHHHHHH
Q 026685 81 EPSSLQVATSVLLTGAISVFLFRALR 106 (235)
Q Consensus 81 e~spLQvA~svllTGaisvFlfRslr 106 (235)
|.|-...+..+++..++.++++|+++
T Consensus 13 e~sl~~~~~~l~~~~~~l~ll~~ll~ 38 (108)
T PF07219_consen 13 ETSLWVALILLLLLFVVLYLLLRLLR 38 (108)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566665566666666654
No 40
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.54 E-value=40 Score=34.46 Aligned_cols=39 Identities=31% Similarity=0.526 Sum_probs=27.4
Q ss_pred ccCCCCCChhh-----------hhhhhHHHHHHHHHHHHHHHHHHHH-hhh
Q 026685 76 FATTDEPSSLQ-----------VATSVLLTGAISVFLFRALRRRAKR-AKE 114 (235)
Q Consensus 76 ~~~~de~spLQ-----------vA~svllTGaisvFlfRslrRRakr-AKE 114 (235)
|+--+|++..| -..-++|+|+++..|.|.+|+-..| |||
T Consensus 211 fdkyld~~ff~h~IHWfSIfNSfmmVifLvGlvamILMRtLrnDyarY~~d 261 (593)
T KOG1277|consen 211 FDKYLDPSFFPHRIHWFSIFNSFMMVIFLVGLVAMILMRTLRNDYARYAKD 261 (593)
T ss_pred hHhhcccccccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44445666555 2455789999999999999986543 444
No 41
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=33.47 E-value=1.2e+02 Score=24.60 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 026685 89 TSVLLTGAISVFLFRALRRRAK 110 (235)
Q Consensus 89 ~svllTGaisvFlfRslrRRak 110 (235)
..+++.+++++++++..|||-+
T Consensus 26 l~~lll~~~~~~~~~~~r~~~~ 47 (146)
T PF14316_consen 26 LLALLLLLLILLLWRLWRRWRR 47 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3344445555666665555443
No 42
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=33.45 E-value=28 Score=26.84 Aligned_cols=21 Identities=0% Similarity=0.097 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 026685 94 TGAISVFLFRALRRRAKRAKE 114 (235)
Q Consensus 94 TGaisvFlfRslrRRakrAKE 114 (235)
.+.+.+++.+.+.|+.++..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~ 170 (275)
T PF00664_consen 150 ILPLLFLISFIFSKKIRKLSK 170 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhhhhccccccccc
Confidence 344444555555555544443
No 43
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.40 E-value=44 Score=27.04 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026685 153 ALLGGLTAGVIAIILYKFTT 172 (235)
Q Consensus 153 allGav~AGvIA~iLYkFTT 172 (235)
+++|.|++++|.+++.+++.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~ 21 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTS 21 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999875
No 44
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=32.34 E-value=24 Score=32.54 Aligned_cols=31 Identities=6% Similarity=-0.038 Sum_probs=23.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 026685 87 VATSVLLTGAISVFLFRALRRRAKRAKELKF 117 (235)
Q Consensus 87 vA~svllTGaisvFlfRslrRRakrAKE~R~ 117 (235)
+++.+++.+++..++.|-..++.+.++|.+.
T Consensus 417 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 447 (476)
T PLN00028 417 LMGVMIIACTLPVAFIHFPQWGGMFFGPSKD 447 (476)
T ss_pred HHHHHHHHHHHHHHheeccchhhhhcCCCcc
Confidence 4444566778888888888888877888766
No 45
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=32.32 E-value=40 Score=24.42 Aligned_cols=26 Identities=38% Similarity=0.630 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 026685 149 SPVQALLGGLTAGVIAIILYKFTTTI 174 (235)
Q Consensus 149 SP~QallGav~AGvIA~iLYkFTT~I 174 (235)
||+.+++||+.=|+-+.+++.++-.|
T Consensus 1 Tp~~~l~GG~lIGla~~~ll~~~Gri 26 (62)
T PF14241_consen 1 TPWSALIGGLLIGLAASLLLLLNGRI 26 (62)
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCcc
Confidence 79999999999999999998885443
No 46
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=31.59 E-value=2.5e+02 Score=23.45 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=18.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH
Q 026685 147 PPSPVQALLGGLTAGVIAIILYKF 170 (235)
Q Consensus 147 ppSP~QallGav~AGvIA~iLYkF 170 (235)
-.+|+.+.++-+.++.+-++-|.+
T Consensus 94 ~~~al~sgls~~~G~llPLlp~~~ 117 (175)
T cd02437 94 LPSGLIQGISTTLGGLLPLLPFLP 117 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888887777764
No 47
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=31.15 E-value=36 Score=25.40 Aligned_cols=20 Identities=35% Similarity=0.288 Sum_probs=12.6
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 026685 149 SPVQALLGGLTAGVIAIILY 168 (235)
Q Consensus 149 SP~QallGav~AGvIA~iLY 168 (235)
-....+++++.-.++++++.
T Consensus 71 ~~~~~ll~~~ll~l~~iil~ 90 (92)
T PF13038_consen 71 WTYPLLLIGLLLILLSIILS 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556777766666666654
No 48
>PRK13952 mscL large-conductance mechanosensitive channel; Provisional
Probab=31.09 E-value=1e+02 Score=26.16 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=19.8
Q ss_pred ChhhhhhhhHHHHHHHHHHHHHHHH
Q 026685 83 SSLQVATSVLLTGAISVFLFRALRR 107 (235)
Q Consensus 83 spLQvA~svllTGaisvFlfRslrR 107 (235)
.-+|+...+++++++.+++++.+.|
T Consensus 87 ~fl~avInFlIiA~vvf~ivk~~nk 111 (142)
T PRK13952 87 NFITVLINFLILAFIIFLMVKAINR 111 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999988888888777653
No 49
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=29.91 E-value=1.4e+02 Score=29.37 Aligned_cols=94 Identities=22% Similarity=0.284 Sum_probs=55.0
Q ss_pred ccccCCccccCCCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCchHHHHHHHHhcCCCCCCCCCC
Q 026685 68 PVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGP 147 (235)
Q Consensus 68 pielp~~~~~~~de~spLQvA~svllTGaisvFlfRslrRRakrAKE~R~rSsg~~kslkEEa~e~lka~~~~~~~~~~p 147 (235)
-.|.|.++|+.+--.- -+-.|+++-..+..-=+...+||.-+++|.|+.+.+-++.-+| ...++||
T Consensus 142 aLeVP~~~fsatlaaD--tv~ySll~~lli~iVpy~~kw~~~tkpdesKL~A~~~e~a~~e------------~ywKrkp 207 (384)
T COG5505 142 ALEVPGEYFSATLAAD--TVMYSLLFFLLISIVPYKWKWRHYTKPDESKLKADGNEGASAE------------SYWKRKP 207 (384)
T ss_pred hhcCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhccCccHHHHhhhhhhhhhhh------------hhhhcCC
Confidence 4567777775441110 1445777766666666777888999999998887763222222 2334445
Q ss_pred CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026685 148 PSPVQ-ALLGGLTAGVIAIILYKFTTTIEAALNR 180 (235)
Q Consensus 148 pSP~Q-allGav~AGvIA~iLYkFTT~IeaSf~r 180 (235)
-|-.. +++- +|++.+--.+++|.+.+-.
T Consensus 208 ~Sl~D~afl~-----Gislav~AVa~~Is~~l~~ 236 (384)
T COG5505 208 ISLKDIAFLA-----GISLAVVAVAMKISGYLKS 236 (384)
T ss_pred ccHHHHHHHh-----hHHHHHHHHHHHHHhhccc
Confidence 55544 3332 2444444567788887763
No 50
>PF01569 PAP2: PAP2 superfamily This family includes the following Prosite family; InterPro: IPR000326 This entry represents type 2 phosphatidic acid phosphatase (PAP2; 3.1.3.4 from EC) enzymes, such as phosphatidylglycerophosphatase B 3.1.3.27 from EC from Escherichia coli. PAP2 enzymes have a core structure consisting of a 5-helical bundle, where the beginning of the third helix binds the cofactor []. PAP2 enzymes catalyse the dephosphorylation of phosphatidate, yielding diacylglycerol and inorganic phosphate []. In eukaryotic cells, PAP activity has a central role in the synthesis of phospholipids and triacylglycerol through its product diacylglycerol, and it also generates and/or degrades lipid-signalling molecules that are related to phosphatidate. Other related enzymes have a similar core structure, including haloperoxidases such as bromoperoxidase (contains one core bundle, but forms a dimer), chloroperoxidases (contains two core bundles arranged as in other family dimers), bacitracin transport permease from Bacillus licheniformis, glucose-6-phosphatase from rat. The vanadium-dependent haloperoxidases exclusively catalyse the oxidation of halides, and act as histidine phosphatases, using histidine for the nucleophilic attack in the first step of the reaction []. Amino acid residues involved in binding phosphate/vanadate are conserved between the two families, supporting a proposal that vanadium passes through a tetrahedral intermediate during the reaction mechanism.; GO: 0003824 catalytic activity, 0016020 membrane; PDB: 1QI9_B 1IW8_A 1EOI_A 1D2T_A 1QHB_D 1UP8_C 2IPB_A 1VNS_A 1VNF_A 1VNE_A ....
Probab=29.84 E-value=29 Score=25.46 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=24.2
Q ss_pred CCCChhhhhhhhHHHHHHHHHHHHHHHHHH
Q 026685 80 DEPSSLQVATSVLLTGAISVFLFRALRRRA 109 (235)
Q Consensus 80 de~spLQvA~svllTGaisvFlfRslrRRa 109 (235)
.-=.+.|+.+|.++..++++++.+..+||+
T Consensus 99 g~H~~~Dvi~G~~lg~~~~~~~~~~~~~~~ 128 (129)
T PF01569_consen 99 GAHFFSDVIAGILLGILIAYLFYRVYKKRR 128 (129)
T ss_dssp TSS-HHHHHHHHHHHHHHHHHHCCHCHHH-
T ss_pred CeEehHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 344678999999999999999999998885
No 51
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=29.77 E-value=58 Score=26.63 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 026685 97 ISVFLFRALRRRAKRAKE 114 (235)
Q Consensus 97 isvFlfRslrRRakrAKE 114 (235)
+.+|++|-=|||.|+.++
T Consensus 15 i~yf~iRPQkKr~Ke~~e 32 (113)
T PRK06531 15 LIFFMQRQQKKQAQERQN 32 (113)
T ss_pred HHHheechHHHHHHHHHH
Confidence 344555555555555544
No 52
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=29.40 E-value=2.9e+02 Score=21.87 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=9.7
Q ss_pred HHHHHHhhhhhhhccCCCCCchHH
Q 026685 106 RRRAKRAKELKFRSSGAKKSLKDE 129 (235)
Q Consensus 106 rRRakrAKE~R~rSsg~~kslkEE 129 (235)
..+.+.+.+...+..+..+...||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~ 120 (163)
T PF13858_consen 97 FENYIEAQIEEMKESGSNPEMIEE 120 (163)
T ss_pred HHHHHHHHHHHHHHcccCHhhHHH
Confidence 444444443333444434444333
No 53
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=28.78 E-value=96 Score=21.33 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=18.9
Q ss_pred HHHHHHHhhhhhhhccCCCCCchHHHHHHH
Q 026685 105 LRRRAKRAKELKFRSSGAKKSLKDEALDNL 134 (235)
Q Consensus 105 lrRRakrAKE~R~rSsg~~kslkEEa~e~l 134 (235)
+|+|+|++-|.--+..| .+.+..|.++..
T Consensus 16 vR~~~r~~~E~~Ar~~G-~~~IT~e~v~~A 44 (45)
T PF08369_consen 16 VRKKLRDAAEKYARERG-YDEITVEVVDAA 44 (45)
T ss_dssp HHHHHHHHHHHHHHHCT--SEE-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CCeECHHHHHhh
Confidence 45899888887666666 556666666554
No 54
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=28.65 E-value=2.7e+02 Score=25.04 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=36.6
Q ss_pred CCChhhhhhhhHHH-HHHHHHHHHHHHHHHHHhhhhhhhccCCCCCchHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHH
Q 026685 81 EPSSLQVATSVLLT-GAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLT 159 (235)
Q Consensus 81 e~spLQvA~svllT-GaisvFlfRslrRRakrAKE~R~rSsg~~kslkEEa~e~lka~~~~~~~~~~ppSP~QallGav~ 159 (235)
.+.-.++...+.+. .+++++.++.+-|+-||-|+.+..++..++=-=||-++.+|.+. |.+-+++..-.+.
T Consensus 178 ~~~~~~~~~~~~~~~~i~~~i~f~~L~~~Nkk~r~~~~~~~LS~RYQl~ENl~slr~L~--------p~~~~~~i~~~~~ 249 (324)
T PF10292_consen 178 SPYRVNIPFIVILVLQILALILFRYLLRKNKKLRKQQKHSTLSERYQLEENLRSLRLLK--------PFIILSSIFIFFY 249 (324)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHhHHhHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 44455555444433 35666667766666666666444444433322334444444443 5555555544444
Q ss_pred HH
Q 026685 160 AG 161 (235)
Q Consensus 160 AG 161 (235)
.+
T Consensus 250 ~~ 251 (324)
T PF10292_consen 250 IF 251 (324)
T ss_pred HH
Confidence 33
No 55
>PRK13953 mscL large-conductance mechanosensitive channel; Provisional
Probab=27.86 E-value=1.3e+02 Score=25.11 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=19.8
Q ss_pred ChhhhhhhhHHHHHHHHHHHHHHHH
Q 026685 83 SSLQVATSVLLTGAISVFLFRALRR 107 (235)
Q Consensus 83 spLQvA~svllTGaisvFlfRslrR 107 (235)
+-+|....++.++++.+++++.+.|
T Consensus 68 ~fl~avinFlIia~vvF~~vk~~nk 92 (125)
T PRK13953 68 AFIQSIVDFLIIAFAIFIFVKVLTS 92 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888899988888887777664
No 56
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=27.74 E-value=62 Score=32.24 Aligned_cols=38 Identities=16% Similarity=0.023 Sum_probs=29.2
Q ss_pred ChhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Q 026685 83 SSLQVATSVLLTGAISVFLFRALRRRAKRAKELKFRSSG 121 (235)
Q Consensus 83 spLQvA~svllTGaisvFlfRslrRRakrAKE~R~rSsg 121 (235)
-|.|.++= ++..+++|++-|.=|||.+++...+...++
T Consensus 179 iP~~i~Gl-~~vl~lA~~lG~kErkRlg~~~~~~~~~~~ 216 (433)
T COG2851 179 IPIQIIGL-VLVLALAWLLGKKERKRLGVIDLSEELEQL 216 (433)
T ss_pred hHHHHHHH-HHHHHHHHHhhHHHHHHhhhccCchhhhhc
Confidence 57888754 445779999999999999999886653333
No 57
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=27.62 E-value=39 Score=28.07 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=27.8
Q ss_pred CCChhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 026685 81 EPSSLQVATSVLLTGAISVFLFRALRRRAKRAKE 114 (235)
Q Consensus 81 e~spLQvA~svllTGaisvFlfRslrRRakrAKE 114 (235)
-+..+|.+....+..+..++.-|.+|||-++-++
T Consensus 45 ~~~~~q~v~f~~lsv~~~~l~rr~~~~~~~~~~~ 78 (140)
T COG1585 45 LSWWLQLVLFAILSVLLALLGRRFVRRRLKPSDG 78 (140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 4568999999999888888888888888777664
No 58
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=27.08 E-value=72 Score=25.48 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhh
Q 026685 101 LFRALRRRAKRAKE 114 (235)
Q Consensus 101 lfRslrRRakrAKE 114 (235)
.+|--|||.|+.+|
T Consensus 35 ~~RpqkK~~k~~~~ 48 (106)
T PRK05585 35 IIRPQQKRQKEHKK 48 (106)
T ss_pred hccHHHHHHHHHHH
Confidence 33666666655544
No 59
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=26.82 E-value=72 Score=32.66 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=21.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh
Q 026685 87 VATSVLLTGAISVFLFRALRRRAKRA 112 (235)
Q Consensus 87 vA~svllTGaisvFlfRslrRRakrA 112 (235)
...++++..++++-++|+||+|++|.
T Consensus 728 ~~~~~~~~~l~~~~~~~~Lr~~~~rR 753 (756)
T PRK11114 728 ALLAALSVLLLALVLWRLLRRIARRR 753 (756)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566667788889999999999885
No 60
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=26.69 E-value=63 Score=26.30 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=8.5
Q ss_pred CCCchHHHHHHHHhcC
Q 026685 123 KKSLKDEALDNLKALG 138 (235)
Q Consensus 123 ~kslkEEa~e~lka~~ 138 (235)
+|.+.+|+.|++....
T Consensus 32 sKGLt~~EI~~al~~a 47 (136)
T PF04695_consen 32 SKGLTEEEIDEALGRA 47 (136)
T ss_dssp HCT--HHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhc
Confidence 4788888866654433
No 61
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=26.57 E-value=67 Score=30.51 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=29.7
Q ss_pred ccCCCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 026685 76 FATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRA 112 (235)
Q Consensus 76 ~~~~de~spLQvA~svllTGaisvFlfRslrRRakrA 112 (235)
+.+--+.-+-|+|++|+.|....=++...+-||.++.
T Consensus 274 ~~~~~~~Ataqvaa~vivTail~P~~t~~~~k~~~~~ 310 (312)
T PRK12460 274 LAPVAAAATAQVAASVIVTAILTPLLTSWVAKKEAKK 310 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3334555678999999999999999999998887753
No 62
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=26.56 E-value=2.8e+02 Score=22.16 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=12.7
Q ss_pred CCCChHHHHHHHHHHHHH
Q 026685 146 GPPSPVQALLGGLTAGVI 163 (235)
Q Consensus 146 ~ppSP~QallGav~AGvI 163 (235)
..||-..+.+++.++..+
T Consensus 89 d~~t~~D~~~~~~l~~~~ 106 (137)
T cd03212 89 DTPTSLDALVFGYLAPLL 106 (137)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 358888888777766554
No 63
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=26.39 E-value=84 Score=27.41 Aligned_cols=54 Identities=28% Similarity=0.262 Sum_probs=32.7
Q ss_pred cccCCCCCChhhhh----hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCchHHHHHHHHhcC
Q 026685 75 IFATTDEPSSLQVA----TSVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALG 138 (235)
Q Consensus 75 ~~~~~de~spLQvA----~svllTGaisvFlfRslrRRakrAKE~R~rSsg~~kslkEEa~e~lka~~ 138 (235)
-|+.-+.|=..|++ +=|++..+-+++++|..|||-+.+ ...+.+|+.+.+.+..
T Consensus 93 ~FVly~Pp~~~~T~lLW~~Pv~llllG~~~~~~~~rrr~~~~----------~~~Ls~ee~~rl~~ll 150 (153)
T COG3088 93 EFVLYKPPLTGQTLLLWGLPVVLLLLGGVLLVRRARRRVREP----------PQTLSAEEEARLARLL 150 (153)
T ss_pred ceeeecCCCchhHHHHHHhHHHHHHHHHHHHHHHHhhhhccC----------CCCCChhHHHHHHHHh
Confidence 46666666555554 445666777788888888876511 2456656555555443
No 64
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=25.95 E-value=65 Score=24.63 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhhhh
Q 026685 100 FLFRALRRRAKRAKEL 115 (235)
Q Consensus 100 FlfRslrRRakrAKE~ 115 (235)
+..|--|||.|+-+|.
T Consensus 19 ~~~rpqkK~~k~~~~m 34 (84)
T TIGR00739 19 LIIRPQRKRRKAHKKL 34 (84)
T ss_pred heechHHHHHHHHHHH
Confidence 3446666666666553
No 65
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=25.75 E-value=3.4e+02 Score=25.06 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026685 153 ALLGGLTAGVIAIILYKFTTT 173 (235)
Q Consensus 153 allGav~AGvIA~iLYkFTT~ 173 (235)
..+|.+.++++++++|+.+.+
T Consensus 157 ~~~Gl~~~~~~g~li~~~~~~ 177 (283)
T TIGR00145 157 AVAGLIVAVVVGVLLYRGGSR 177 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 566777788888999987765
No 66
>COG1970 MscL Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=25.34 E-value=2.2e+02 Score=24.34 Aligned_cols=56 Identities=9% Similarity=0.170 Sum_probs=33.0
Q ss_pred CCChhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--CCCCCchHHHHHHHHhcC
Q 026685 81 EPSSLQVATSVLLTGAISVFLFRALRRRAKRAKELKFRSS--GAKKSLKDEALDNLKALG 138 (235)
Q Consensus 81 e~spLQvA~svllTGaisvFlfRslrRRakrAKE~R~rSs--g~~kslkEEa~e~lka~~ 138 (235)
=-+-+|++.-+++++++.++..+.+-|=-|+-+++ +.. ...++-+|+-+.++|...
T Consensus 70 yG~Fi~~vinFlIiAf~iFl~Vk~inkl~~~~~~~--~~e~~~~~~~~e~~LLtEIRDLL 127 (130)
T COG1970 70 YGAFIQAVINFLIIAFAIFLVVKAINKLRRKLEKE--EPEAPAPAPPAEEVLLTEIRDLL 127 (130)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCCCCCCchHHHHHHHHHHHH
Confidence 34678999999998888877777665433332211 222 222445555577766554
No 67
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=25.21 E-value=65 Score=25.10 Aligned_cols=22 Identities=45% Similarity=0.505 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 026685 93 LTGAISVFLFRALRRRAKRAKE 114 (235)
Q Consensus 93 lTGaisvFlfRslrRRakrAKE 114 (235)
+...+.|.+.|..||.-|-+||
T Consensus 21 ~~~~~~wi~~Ra~~~~DKT~~e 42 (72)
T PF13268_consen 21 LLVSGIWILWRALRKKDKTAKE 42 (72)
T ss_pred HHHHHHHHHHHHHHcCCCcHHH
Confidence 3345668888888776666655
No 68
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=24.49 E-value=3.2e+02 Score=25.79 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 026685 90 SVLLTGAISVFLFRALRRRAK 110 (235)
Q Consensus 90 svllTGaisvFlfRslrRRak 110 (235)
|++.-+.|+.-+.+.+-||.+
T Consensus 167 Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 167 GLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 444455666666666666665
No 69
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=24.44 E-value=69 Score=30.58 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=29.4
Q ss_pred ccCCCCCChhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 026685 76 FATTDEPSSLQVATSVLLTGAISVFLFRALRRRAK 110 (235)
Q Consensus 76 ~~~~de~spLQvA~svllTGaisvFlfRslrRRak 110 (235)
|.+--+..+-|+|++|++|.++.=++...+-||-|
T Consensus 280 ~~~~~~~ATaQvAaavIvTail~P~lt~~~~kr~k 314 (314)
T PF03812_consen 280 FAPYAASATAQVAAAVIVTAILTPILTSWWAKRFK 314 (314)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44445556789999999999999999999999865
No 70
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=24.27 E-value=2.7e+02 Score=21.77 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=13.7
Q ss_pred CCCChHHHHHHHHHHHHH
Q 026685 146 GPPSPVQALLGGLTAGVI 163 (235)
Q Consensus 146 ~ppSP~QallGav~AGvI 163 (235)
..||-..|.+++.++.++
T Consensus 82 d~pT~~Da~vf~~la~~~ 99 (126)
T cd03211 82 DQPTELDALVFGHLFTIL 99 (126)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 358999988888776665
No 71
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=23.92 E-value=1.9e+02 Score=28.52 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=23.3
Q ss_pred Chhh-hhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 026685 83 SSLQ-VATSVLLTGAISVFLFRALRRRAKRAKE 114 (235)
Q Consensus 83 spLQ-vA~svllTGaisvFlfRslrRRakrAKE 114 (235)
..++ ..+.+++.|.+..++.|.++|+.-..++
T Consensus 220 ~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~ 252 (491)
T PF03219_consen 220 LSLNSLMGIVLILGIVIILLYRYMNKNVLTDPR 252 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCccc
Confidence 3454 4556778899999999999998844433
No 72
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=23.45 E-value=96 Score=25.29 Aligned_cols=10 Identities=30% Similarity=0.388 Sum_probs=4.9
Q ss_pred HHHHHHHhhh
Q 026685 105 LRRRAKRAKE 114 (235)
Q Consensus 105 lrRRakrAKE 114 (235)
.|+.-||+||
T Consensus 22 iRPQkKr~K~ 31 (109)
T PRK05886 22 SRRQRKAMQA 31 (109)
T ss_pred ccHHHHHHHH
Confidence 4444444444
No 73
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=23.07 E-value=58 Score=28.19 Aligned_cols=30 Identities=37% Similarity=0.437 Sum_probs=18.5
Q ss_pred hhhhhhhhHH---HHHHHHHHHHHHHHHHHHhh
Q 026685 84 SLQVATSVLL---TGAISVFLFRALRRRAKRAK 113 (235)
Q Consensus 84 pLQvA~svll---TGaisvFlfRslrRRakrAK 113 (235)
-+|-++-|+. ..+|.+|++|.+|=|-+..|
T Consensus 93 ~l~R~~~Vl~g~s~l~i~yfvir~~R~r~~~rk 125 (163)
T PF06679_consen 93 MLKRALYVLVGLSALAILYFVIRTFRLRRRNRK 125 (163)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3787764432 23466788999986653333
No 74
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=22.86 E-value=1.6e+02 Score=24.20 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=21.1
Q ss_pred CCchHHHHHHHHhcCCCCCCCCCCCChH-HHHHHHHHHHHHHHH
Q 026685 124 KSLKDEALDNLKALGSSSIDAKGPPSPV-QALLGGLTAGVIAII 166 (235)
Q Consensus 124 kslkEEa~e~lka~~~~~~~~~~ppSP~-QallGav~AGvIA~i 166 (235)
+-.-||+++.|++....+. +-++| +.+-.++.++.+|++
T Consensus 81 ~~~~~ea~~~L~~I~~~~~----~y~~~~~~l~~~l~~~~fa~l 120 (193)
T PF06738_consen 81 QLSLEEAIERLDEIDREPP----RYPPWLVILAAGLASAAFALL 120 (193)
T ss_pred CCCHHHHHHHHHHHhhCCC----CCCHHHHHHHHHHHHHHHHHH
Confidence 4556777888886663331 23444 444445555555443
No 75
>PF02681 DUF212: Divergent PAP2 family; InterPro: IPR003832 This family is related to the acid phosphatase/vanadium-dependent haloperoxidases; members of this group are uncharacterised.
Probab=22.83 E-value=1.5e+02 Score=25.23 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.8
Q ss_pred CCChHHHHHHHHHHHHHH
Q 026685 147 PPSPVQALLGGLTAGVIA 164 (235)
Q Consensus 147 ppSP~QallGav~AGvIA 164 (235)
==||.|-+.|++++.++|
T Consensus 124 GHtp~EV~~G~llGi~vA 141 (141)
T PF02681_consen 124 GHTPLEVFAGALLGIVVA 141 (141)
T ss_pred CCCHHHHHHHHHHHHhhC
Confidence 469999999999998875
No 76
>PRK06287 cobalt transport protein CbiN; Validated
Probab=22.77 E-value=76 Score=25.40 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=18.2
Q ss_pred ChhhhhhhhHHHHHHHHHHHHHHHHH
Q 026685 83 SSLQVATSVLLTGAISVFLFRALRRR 108 (235)
Q Consensus 83 spLQvA~svllTGaisvFlfRslrRR 108 (235)
+.+=-..|+++|.++++.+.|.++||
T Consensus 79 ~ilsgiiGv~i~l~l~~~~~~~l~r~ 104 (107)
T PRK06287 79 EIIAMVIGTLLVLALAYGVGKIFKKK 104 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344667777778888888888776
No 77
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=22.71 E-value=8.3e+02 Score=24.90 Aligned_cols=94 Identities=9% Similarity=0.030 Sum_probs=52.2
Q ss_pred ChhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-----------hhhccCCC-CCchHHHHHHHHhcCCCCCCCCCCCCh
Q 026685 83 SSLQVATSVLLTGAISVFLFRALRRRAKRAKEL-----------KFRSSGAK-KSLKDEALDNLKALGSSSIDAKGPPSP 150 (235)
Q Consensus 83 spLQvA~svllTGaisvFlfRslrRRakrAKE~-----------R~rSsg~~-kslkEEa~e~lka~~~~~~~~~~ppSP 150 (235)
-|+++..|+++..+..-++...+.+.-.+--+. -+=+||.| +.=.+..+|+.|.+| ++.+.+..+-
T Consensus 214 ~Plki~~gl~~l~l~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKTE~pT~krl~~ARekG--qV~kS~El~~ 291 (609)
T PRK12772 214 LPIKILVGLTAFVIALPLFLKVISSAFSNLPDAIRGFYKAIPLLLIFASDDKTEEATPKKKSDARKKG--QIAKSKELAL 291 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCCCCCCChhHHHHHHhcC--CCCchHHHHH
Confidence 588999998888877777777776665544332 22233322 222344466666555 5556556666
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHh
Q 026685 151 VQALLGGLTAGVIA--IILYKFTTTIEAAL 178 (235)
Q Consensus 151 ~QallGav~AGvIA--~iLYkFTT~IeaSf 178 (235)
.=.++|++....+. ....++...+..++
T Consensus 292 a~~l~~~~~~l~~~~~~~~~~l~~~~~~~~ 321 (609)
T PRK12772 292 AITLLACTLVLSALGGYVANTLKETMIYFL 321 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666554443322 22333444455455
No 78
>PF03899 ATP_synt_I: ATP synthase I chain; InterPro: IPR005598 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The atp operon of most prokaryotes contains the structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein of unknown function. A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex []. A role in magnesium uptake has also been suggested []. More information about this protein can be found at Protein of the Month: ATP synthases [].
Probab=22.61 E-value=1.7e+02 Score=20.95 Aligned_cols=30 Identities=43% Similarity=0.442 Sum_probs=25.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 026685 85 LQVATSVLLTGAISVFLFRALRRRAKRAKE 114 (235)
Q Consensus 85 LQvA~svllTGaisvFlfRslrRRakrAKE 114 (235)
.+.+.|+++-+++++.-++.+-+|.+|-++
T Consensus 23 ~~~~~s~~~G~~i~~~~~~~~~~~~~~~~~ 52 (100)
T PF03899_consen 23 WPVALSFLLGGLISLLNFFLLARRVFRLAG 52 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 358899999999999999999999966544
No 79
>PF14264 Glucos_trans_II: Glucosyl transferase GtrII
Probab=22.32 E-value=4e+02 Score=23.35 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 026685 156 GGLTAGVIAIILYKFTTTIEAALNRQTISD 185 (235)
Q Consensus 156 Gav~AGvIA~iLYkFTT~IeaSf~rQ~lpD 185 (235)
..+...++++++|....++-..+.+-..++
T Consensus 175 ~~~~~~~~g~~lY~i~~k~~~~~~~~~~~~ 204 (319)
T PF14264_consen 175 KSLAVLIIGLLLYFIINKIILYLFGIELSD 204 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 346677788888888888866655554444
No 80
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=21.85 E-value=1e+02 Score=26.85 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=20.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 026685 85 LQVATSVLLTGAISVFLFRALRRRAKRAKE 114 (235)
Q Consensus 85 LQvA~svllTGaisvFlfRslrRRakrAKE 114 (235)
++++++.++-++.+|++.|...||-++..+
T Consensus 104 ~~~~~~~~lg~~l~fl~~r~ysRkl~~~~~ 133 (150)
T COG3086 104 LIVIFGAFLGLALGFLLARRYSRKLAKRTE 133 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 455666666677777788877777665444
No 81
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=21.56 E-value=1.5e+02 Score=26.72 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=11.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH
Q 026685 87 VATSVLLTGAISVFLFRALRRR 108 (235)
Q Consensus 87 vA~svllTGaisvFlfRslrRR 108 (235)
+-..++|+|++..=.-+.--+|
T Consensus 138 ~Il~~vLvGVL~LQaG~wYAer 159 (196)
T smart00786 138 TILLFVLVGVLVLQAGLWYAER 159 (196)
T ss_pred hhHHHHHHHHHHHHhhHHHHHH
Confidence 4455777776654444444344
No 82
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=21.40 E-value=2.3e+02 Score=27.53 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 026685 91 VLLTGAISVFLFRALRRRAKRAKE 114 (235)
Q Consensus 91 vllTGaisvFlfRslrRRakrAKE 114 (235)
+++.|.+....==.+--||..-||
T Consensus 136 ~vL~Gv~v~LiGIai~g~AG~~Ke 159 (344)
T PF06379_consen 136 IVLLGVAVCLIGIAICGKAGSMKE 159 (344)
T ss_pred hhhhHHHHHHHHHHHHhHHHHhhh
Confidence 344444444444445556665555
No 83
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=21.25 E-value=94 Score=24.60 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=18.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 026685 88 ATSVLLTGAISVFLFRALRRRAKRAKEL 115 (235)
Q Consensus 88 A~svllTGaisvFlfRslrRRakrAKE~ 115 (235)
+.+-++..++++++.|.++||.++.+++
T Consensus 100 ~l~~l~~l~~~~~~~~~~~~~~~~~~~~ 127 (135)
T PF04246_consen 100 ILGGLLGLALGFLILRLFDRRLKKKSKF 127 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 3334444677888889998887765443
No 84
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=21.17 E-value=82 Score=19.48 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=10.3
Q ss_pred CCCChhhhhhhhHHHHHHHHHH
Q 026685 80 DEPSSLQVATSVLLTGAISVFL 101 (235)
Q Consensus 80 de~spLQvA~svllTGaisvFl 101 (235)
.||++ .+++..|+..+.+
T Consensus 3 PEPst----~~l~~~gl~~l~~ 20 (25)
T PF07589_consen 3 PEPST----LALLGLGLLGLAF 20 (25)
T ss_pred CCcHH----HHHHHHHHHHHHH
Confidence 45554 4556666666655
No 85
>PHA02975 hypothetical protein; Provisional
Probab=21.00 E-value=3.4e+02 Score=21.08 Aligned_cols=46 Identities=11% Similarity=-0.032 Sum_probs=33.9
Q ss_pred CCchHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 026685 124 KSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYK 169 (235)
Q Consensus 124 kslkEEa~e~lka~~~~~~~~~~ppSP~QallGav~AGvIA~iLYk 169 (235)
++..||=.|-.|.+.+.....++..+.++-++=.+.++++++++-.
T Consensus 17 DdDF~nFI~vVksVLtdk~~~~~~~~~~~~~ii~i~~v~~~~~~~f 62 (69)
T PHA02975 17 DSDFEDFIDTIMHVLTGKKEPKKKSSLSIILIIFIIFITCIAVFTF 62 (69)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCcCCchHHHHHHHHHHHHHHHHHHH
Confidence 5666777888888886655455578888888888888887776543
No 86
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=20.96 E-value=1.1e+02 Score=29.85 Aligned_cols=25 Identities=32% Similarity=0.689 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Q 026685 90 SVLLTGAISVFLFRALRRRAKRAKE 114 (235)
Q Consensus 90 svllTGaisvFlfRslrRRakrAKE 114 (235)
-++|+|+++..+.|.+||-.+|-.+
T Consensus 210 vl~L~~~v~~Il~R~l~~D~~~y~~ 234 (521)
T PF02990_consen 210 VLFLSGLVAIILLRTLRRDISRYND 234 (521)
T ss_pred HHHHHHHHHHHHHHHhhcccccccc
Confidence 3566899999999999987766554
No 87
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=20.75 E-value=3.4e+02 Score=19.75 Aligned_cols=22 Identities=23% Similarity=0.233 Sum_probs=12.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHH
Q 026685 147 PPSPVQALLGGLTAGVIAIILY 168 (235)
Q Consensus 147 ppSP~QallGav~AGvIA~iLY 168 (235)
|-..+-..+|++.++++++++-
T Consensus 56 P~~~lil~l~~~~Gl~lgi~~~ 77 (82)
T PF13807_consen 56 PKRALILALGLFLGLILGIGLA 77 (82)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666666543
No 88
>PF10265 DUF2217: Uncharacterized conserved protein (DUF2217); InterPro: IPR019392 This is a family of conserved proteins varying in length from 500-600 residues. Their function is not known.
Probab=20.51 E-value=68 Score=32.43 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=25.9
Q ss_pred CChhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 026685 82 PSSLQVATSVLLTGAISVFLFRALRRRAKRAK 113 (235)
Q Consensus 82 ~spLQvA~svllTGaisvFlfRslrRRakrAK 113 (235)
|+...|-+++++.+++..++.|-||||-+|.|
T Consensus 12 ~~~Kkvl~atA~g~v~l~~lA~~lkRRr~kkk 43 (514)
T PF10265_consen 12 PGLKKVLFATAVGVVSLIFLAHYLKRRRRKKK 43 (514)
T ss_pred ccceeeeehhHHHHHHHHHHHHHHHHhhcccc
Confidence 35667778888888888899999999987766
No 89
>PRK04307 putative disulfide oxidoreductase; Provisional
Probab=20.26 E-value=1.6e+02 Score=26.49 Aligned_cols=21 Identities=19% Similarity=0.012 Sum_probs=16.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 026685 87 VATSVLLTGAISVFLFRALRR 107 (235)
Q Consensus 87 vA~svllTGaisvFlfRslrR 107 (235)
+++++.+..++.++.-+.+++
T Consensus 194 ~~f~~~~~~l~~~~~~~~~~~ 214 (218)
T PRK04307 194 LAFGLCLVLLVVMSGAWALKL 214 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 788888877777777776666
No 90
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=20.12 E-value=1.5e+02 Score=20.72 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=23.7
Q ss_pred ChhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 026685 83 SSLQVATSVLLTGAISVFLFRALRRRAKRAK 113 (235)
Q Consensus 83 spLQvA~svllTGaisvFlfRslrRRakrAK 113 (235)
.-|.-....++|..+.+|+.|.+.|..++++
T Consensus 11 vGL~Sl~vI~~~igm~~~~~~~F~~k~~~~~ 41 (42)
T PF11346_consen 11 VGLMSLIVIVFTIGMGVFFIRYFIRKMKEDE 41 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 3455566677888899999999998877654
No 91
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=20.03 E-value=1.3e+02 Score=22.64 Aligned_cols=6 Identities=17% Similarity=0.573 Sum_probs=2.2
Q ss_pred HHHHHH
Q 026685 103 RALRRR 108 (235)
Q Consensus 103 RslrRR 108 (235)
|-=|||
T Consensus 21 rpqkk~ 26 (82)
T PF02699_consen 21 RPQKKQ 26 (82)
T ss_dssp HHHHHH
T ss_pred cHHHHH
Confidence 333333
Done!