Query 026685
Match_columns 235
No_of_seqs 26 out of 28
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 19:36:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 53.8 19 0.00065 26.4 4.6 22 86-107 16-37 (79)
2 2rdd_B UPF0092 membrane protei 47.2 18 0.00062 22.9 3.1 17 99-115 18-34 (37)
3 2k9j_B Integrin beta-3; transm 38.1 61 0.0021 21.3 4.7 28 148-175 6-38 (43)
4 2ks1_B Epidermal growth factor 37.4 11 0.00038 25.4 1.0 22 90-111 20-41 (44)
5 2rdd_B UPF0092 membrane protei 36.6 37 0.0013 21.4 3.3 24 93-116 9-32 (37)
6 2knc_B Integrin beta-3; transm 30.7 54 0.0018 24.0 3.9 27 147-174 7-38 (79)
7 2i68_A Protein EMRE; transmemb 27.7 26 0.0009 27.5 1.8 49 79-133 80-128 (137)
8 2l2t_A Receptor tyrosine-prote 26.9 19 0.00066 24.3 0.8 10 102-111 31-40 (44)
9 2heu_A Sugar ABC transporter, 25.0 15 0.00052 30.7 0.0 9 1-9 1-9 (401)
10 3h1n_A Probable glutathione S- 21.5 35 0.0012 27.2 1.5 16 22-37 13-28 (252)
11 3bws_A Protein LP49; two-domai 21.2 20 0.00069 28.9 0.0 10 1-10 1-10 (433)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=53.80 E-value=19 Score=26.42 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=16.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 026685 86 QVATSVLLTGAISVFLFRALRR 107 (235)
Q Consensus 86 QvA~svllTGaisvFlfRslrR 107 (235)
=+.+|+++.|++.+++.|.+..
T Consensus 16 gvi~gilliGllllliwk~~~~ 37 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKLLIT 37 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778889999888887743
No 2
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=47.20 E-value=18 Score=22.90 Aligned_cols=17 Identities=29% Similarity=0.600 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhhh
Q 026685 99 VFLFRALRRRAKRAKEL 115 (235)
Q Consensus 99 vFlfRslrRRakrAKE~ 115 (235)
+++.|-=|||.|+.+|.
T Consensus 18 Fl~iRPQ~Kr~K~~~~m 34 (37)
T 2rdd_B 18 FMILRPQQKRTKEHKKL 34 (37)
T ss_dssp HHTHHHHHHHHHHHTTG
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 33456666666666653
No 3
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=38.11 E-value=61 Score=21.33 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=17.9
Q ss_pred CChHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 026685 148 PSPVQALLGGLTAG-----VIAIILYKFTTTIE 175 (235)
Q Consensus 148 pSP~QallGav~AG-----vIA~iLYkFTT~Ie 175 (235)
|-...+.+||+++| .+.+.+||+-+.+.
T Consensus 6 ~~n~~~Iv~gvi~~ivliGl~lLliwk~~~~i~ 38 (43)
T 2k9j_B 6 GPDILVVLLSVMGAILLIGLAALLIWKLLITIH 38 (43)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEeehHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 33555666666664 44556788888775
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=37.44 E-value=11 Score=25.40 Aligned_cols=22 Identities=23% Similarity=0.171 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 026685 90 SVLLTGAISVFLFRALRRRAKR 111 (235)
Q Consensus 90 svllTGaisvFlfRslrRRakr 111 (235)
|+++..++....+=.+|||.++
T Consensus 20 Gv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 20 ALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHhhhhHhh
Confidence 3444334444444455665544
No 5
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=36.64 E-value=37 Score=21.44 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 026685 93 LTGAISVFLFRALRRRAKRAKELK 116 (235)
Q Consensus 93 lTGaisvFlfRslrRRakrAKE~R 116 (235)
+...+++|.|=..|..-||+||.+
T Consensus 9 ~v~~~~ifYFl~iRPQ~Kr~K~~~ 32 (37)
T 2rdd_B 9 LVVFGLIFYFMILRPQQKRTKEHK 32 (37)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334457788999999999999954
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=30.73 E-value=54 Score=23.96 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=15.8
Q ss_pred CCChHHHHHHHHHHH-----HHHHHHHHHHHHH
Q 026685 147 PPSPVQALLGGLTAG-----VIAIILYKFTTTI 174 (235)
Q Consensus 147 ppSP~QallGav~AG-----vIA~iLYkFTT~I 174 (235)
+|..+ +.+||+++| .+.+++||+-+.|
T Consensus 7 ~~n~~-~Iv~gvi~gilliGllllliwk~~~~i 38 (79)
T 2knc_B 7 GPDIL-VVLLSVMGAILLIGLAALLIWKLLITI 38 (79)
T ss_dssp SSCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 444555554 4555669988887
No 7
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=27.73 E-value=26 Score=27.49 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=10.3
Q ss_pred CCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCchHHHHHH
Q 026685 79 TDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDN 133 (235)
Q Consensus 79 ~de~spLQvA~svllTGaisvFlfRslrRRakrAKE~R~rSsg~~kslkEEa~e~ 133 (235)
.|..|+.|.++.++. .++|++.....+... + +-...-.+|-+.|||+.+
T Consensus 80 gE~ls~~~~~Gi~LI--i~GV~ll~~~~~~~~---~-~~~~~v~~~~~~~~~~~~ 128 (137)
T 2i68_A 80 GQRLDLPAIIGMMLI--CAGVLIINLLSRSTP---H-EFEAYVEQKLISEEDLNS 128 (137)
T ss_dssp C------CHHHHHHH--HHHHHHHHHC----------------------------
T ss_pred CCCCCHHHHHHHHHH--HHHHHHHhcCCCCCC---C-CcccchhhhhcCHHHhhh
Confidence 455688887766554 345555543222111 1 111111257788887765
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=26.87 E-value=19 Score=24.33 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 026685 102 FRALRRRAKR 111 (235)
Q Consensus 102 fRslrRRakr 111 (235)
+=.+|||-++
T Consensus 31 ~~~~RRRr~~ 40 (44)
T 2l2t_A 31 AVYVRRKSIK 40 (44)
T ss_dssp HHHHHTTCSS
T ss_pred HHHhhhhhhh
Confidence 3445555443
No 9
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=25.02 E-value=15 Score=30.71 Aligned_cols=9 Identities=44% Similarity=0.652 Sum_probs=0.0
Q ss_pred Ccccccccc
Q 026685 1 MLQTHHLLS 9 (235)
Q Consensus 1 ml~~~h~l~ 9 (235)
|-||||+|-
T Consensus 1 ~~~~~~~~~ 9 (401)
T 2heu_A 1 MHHHHHHLE 9 (401)
T ss_dssp ---------
T ss_pred CCcchhhhh
Confidence 667777663
No 10
>3h1n_A Probable glutathione S-transferase; APC84167, bordetella bronchisepti structural genomics, PSI-2, protein structure initiative; 1.83A {Bordetella bronchiseptica RB50}
Probab=21.53 E-value=35 Score=27.15 Aligned_cols=16 Identities=13% Similarity=0.071 Sum_probs=10.2
Q ss_pred CCCCCCCCcceeeecc
Q 026685 22 KLNFLQKPTISLSAFP 37 (235)
Q Consensus 22 ~~p~~~~p~~~~sa~~ 37 (235)
+-|..+.+++++.-.+
T Consensus 13 ~~~~~~~m~~~L~y~~ 28 (252)
T 3h1n_A 13 ENLYFQGMAYDLWYWD 28 (252)
T ss_dssp CCCGGGGGCEEEECCS
T ss_pred cceeecCCceEEEeCC
Confidence 3356666777777665
No 11
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=21.15 E-value=20 Score=28.90 Aligned_cols=10 Identities=40% Similarity=0.517 Sum_probs=0.0
Q ss_pred Cccccccccc
Q 026685 1 MLQTHHLLSL 10 (235)
Q Consensus 1 ml~~~h~l~~ 10 (235)
|+||||++-+
T Consensus 1 ~~~~~~~~~~ 10 (433)
T 3bws_A 1 MHHHHHHLES 10 (433)
T ss_dssp ----------
T ss_pred Cccccccccc
Confidence 8888887644
Done!