Query 026685
Match_columns 235
No_of_seqs 26 out of 28
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 19:36:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026685.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026685hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oara1 f.16.1.1 (A:10-118) Ga 36.0 14 0.001 26.8 3.4 29 83-111 62-90 (109)
2 d1wpga4 f.33.1.1 (A:1-124,A:24 30.7 46 0.0033 27.7 6.3 45 124-168 22-76 (472)
3 d1yova1 c.111.1.2 (A:6-534) Am 16.4 55 0.004 28.3 4.0 15 146-160 483-497 (529)
4 d2vv5a3 f.34.1.1 (A:27-112) Me 13.7 1.5E+02 0.011 18.8 4.9 23 92-114 9-31 (86)
5 d2pila_ d.24.1.1 (A:) Pilin Gc 13.3 1.4E+02 0.01 19.2 4.6 32 89-120 8-39 (158)
6 d2drpa2 g.37.1.1 (A:140-165) T 12.9 18 0.0013 20.9 -0.3 8 205-212 1-8 (26)
7 d1lqla_ d.227.1.1 (A:) Hypothe 10.5 2E+02 0.015 19.6 5.0 20 146-165 37-56 (141)
8 d1ml8a_ d.227.1.2 (A:) Hypothe 9.7 1.4E+02 0.01 20.1 3.7 20 147-166 33-52 (134)
9 d1i12a_ d.108.1.1 (A:) Glucosa 9.1 53 0.0039 21.6 1.1 13 183-195 1-13 (157)
10 d1qwia_ d.227.1.1 (A:) Osmotic 9.0 1.3E+02 0.0093 20.8 3.3 21 146-166 43-63 (142)
No 1
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=35.98 E-value=14 Score=26.76 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=18.3
Q ss_pred ChhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 026685 83 SSLQVATSVLLTGAISVFLFRALRRRAKR 111 (235)
Q Consensus 83 spLQvA~svllTGaisvFlfRslrRRakr 111 (235)
+-+|....++.++++..|++-.--.|.||
T Consensus 62 ~fi~a~InFlIiA~vv~F~vvk~~n~~~~ 90 (109)
T d2oara1 62 VLLSAAINFFLIAFAVYFLVVLPYNTLRK 90 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35788888888887666655333344444
No 2
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=30.74 E-value=46 Score=27.70 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=32.3
Q ss_pred CCch-HHHHHHHHhcCCCCCCCCCCCChHHHHHHHH---------HHHHHHHHHH
Q 026685 124 KSLK-DEALDNLKALGSSSIDAKGPPSPVQALLGGL---------TAGVIAIILY 168 (235)
Q Consensus 124 kslk-EEa~e~lka~~~~~~~~~~ppSP~QallGav---------~AGvIA~iLY 168 (235)
+.+. +|+.+.+++-|.+..+.+++.|.++-|+... .|+++++++.
T Consensus 22 ~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~~~~~iL~~aa~ls~~~~ 76 (472)
T d1wpga4 22 TGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLA 76 (472)
T ss_dssp TCBCHHHHHHHHHHSCCSSCCCCCCCCHHHHHHHHTCSHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 4443 5568888888999999999999998887753 4455555554
No 3
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.38 E-value=55 Score=28.32 Aligned_cols=15 Identities=40% Similarity=0.751 Sum_probs=12.6
Q ss_pred CCCChHHHHHHHHHH
Q 026685 146 GPPSPVQALLGGLTA 160 (235)
Q Consensus 146 ~ppSP~QallGav~A 160 (235)
....|+.||+||+.|
T Consensus 483 ~el~~vaA~~GGiaa 497 (529)
T d1yova1 483 AEPHTIAAFLGGAAA 497 (529)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHH
Confidence 368899999999876
No 4
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=13.75 E-value=1.5e+02 Score=18.81 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 026685 92 LLTGAISVFLFRALRRRAKRAKE 114 (235)
Q Consensus 92 llTGaisvFlfRslrRRakrAKE 114 (235)
++.-.+++++.|.++|..+|..|
T Consensus 9 l~il~i~~~i~~~i~~~~~~~~~ 31 (86)
T d2vv5a3 9 LAIIIVGLIIARMISNAVNRLMI 31 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467888899999888877655
No 5
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=13.33 E-value=1.4e+02 Score=19.17 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 026685 89 TSVLLTGAISVFLFRALRRRAKRAKELKFRSS 120 (235)
Q Consensus 89 ~svllTGaisvFlfRslrRRakrAKE~R~rSs 120 (235)
.-|+..|.++.+.+..+++-.+|+|.-+..+.
T Consensus 8 VViaIIgILaaia~P~~~~~~~~a~~~~~~~~ 39 (158)
T d2pila_ 8 IVIAIVGILAAVALPAYQDYTARAQVSEAILL 39 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788888888887777777665543
No 6
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}
Probab=12.93 E-value=18 Score=20.94 Aligned_cols=8 Identities=63% Similarity=1.709 Sum_probs=6.4
Q ss_pred ccccceee
Q 026685 205 VLPCNICF 212 (235)
Q Consensus 205 V~~an~~~ 212 (235)
||||-+||
T Consensus 1 vypcp~cf 8 (26)
T d2drpa2 1 VYPCPFCF 8 (26)
T ss_dssp CEECTTTC
T ss_pred CcCCchhh
Confidence 68888887
No 7
>d1lqla_ d.227.1.1 (A:) Hypothetical protein MPN625 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=10.55 E-value=2e+02 Score=19.59 Aligned_cols=20 Identities=40% Similarity=0.471 Sum_probs=15.6
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q 026685 146 GPPSPVQALLGGLTAGVIAI 165 (235)
Q Consensus 146 ~ppSP~QallGav~AGvIA~ 165 (235)
+=+||.+-|++|+.|-....
T Consensus 37 ~G~~P~elllaaLa~C~~~~ 56 (141)
T d1lqla_ 37 KGFGPLAALLSGLAACELAT 56 (141)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHH
Confidence 35999999999988765443
No 8
>d1ml8a_ d.227.1.2 (A:) Hypothetical protein in CRP region {Escherichia coli [TaxId: 562]}
Probab=9.72 E-value=1.4e+02 Score=20.14 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=15.7
Q ss_pred CCChHHHHHHHHHHHHHHHH
Q 026685 147 PPSPVQALLGGLTAGVIAII 166 (235)
Q Consensus 147 ppSP~QallGav~AGvIA~i 166 (235)
-|+|.+-|++|+.+-....+
T Consensus 33 gp~P~elllaal~~C~~~~~ 52 (134)
T d1ml8a_ 33 APSPMEMVLMAAGGCSAIDV 52 (134)
T ss_dssp SCCHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHH
Confidence 58999999999887654433
No 9
>d1i12a_ d.108.1.1 (A:) Glucosamine-phosphate N-acetyltransferase GNA1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.09 E-value=53 Score=21.57 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=10.6
Q ss_pred cCCCceeeeeeec
Q 026685 183 ISDNFSVCASNNN 195 (235)
Q Consensus 183 lpDnysaRnItIt 195 (235)
|||+|+.|.++..
T Consensus 1 ~p~~~~IR~~~~~ 13 (157)
T d1i12a_ 1 LPDGFYIRRMEEG 13 (157)
T ss_dssp CCTTEEEEECCGG
T ss_pred CCCCcEEEeCCHH
Confidence 6899999998664
No 10
>d1qwia_ d.227.1.1 (A:) Osmotically inducible protein OsmC {Escherichia coli [TaxId: 562]}
Probab=9.01 E-value=1.3e+02 Score=20.78 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=16.2
Q ss_pred CCCChHHHHHHHHHHHHHHHH
Q 026685 146 GPPSPVQALLGGLTAGVIAII 166 (235)
Q Consensus 146 ~ppSP~QallGav~AGvIA~i 166 (235)
+-|||+|-|++|+.+-....+
T Consensus 43 ~G~~P~elllaAlasC~~~~~ 63 (142)
T d1qwia_ 43 KGTNPEELIGAAHAACFSMAL 63 (142)
T ss_dssp SSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 459999999999888754433
Done!