BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026687
MPPKRRGRPAKKALPSNAEEAKESQLEDKDAELFYREVERQCAAVRAIRDVELEQTLTGL
RLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIH
ASLLHRMSIGYPYCSGAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQMFGMHE
ALRTPGVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEEDNMGAIQESEEG

High Scoring Gene Products

Symbol, full name Information P value
AT4G39630 protein from Arabidopsis thaliana 3.2e-58

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026687
        (235 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2135202 - symbol:AT4G39630 "AT4G39630" species...   598  3.2e-58   1


>TAIR|locus:2135202 [details] [associations]
            symbol:AT4G39630 "AT4G39630" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0000911 "cytokinesis by cell plate formation"
            evidence=RCA] [GO:0006275 "regulation of DNA replication"
            evidence=RCA] [GO:0006346 "methylation-dependent chromatin
            silencing" evidence=RCA] [GO:0009909 "regulation of flower
            development" evidence=RCA] [GO:0009957 "epidermal cell fate
            specification" evidence=RCA] [GO:0010389 "regulation of G2/M
            transition of mitotic cell cycle" evidence=RCA] [GO:0016458 "gene
            silencing" evidence=RCA] [GO:0031048 "chromatin silencing by small
            RNA" evidence=RCA] [GO:0034968 "histone lysine methylation"
            evidence=RCA] [GO:0051567 "histone H3-K9 methylation" evidence=RCA]
            EMBL:CP002687 IPI:IPI00534132 RefSeq:NP_568063.1 UniGene:At.31078
            EnsemblPlants:AT4G39630.1 GeneID:830117 KEGG:ath:AT4G39630
            OMA:NMEAIHE Uniprot:F4JW44
        Length = 233

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 118/230 (51%), Positives = 159/230 (69%)

Query:     3 PKRRGRPAKKALPSNAEEAKESQLEDKDAELFYREVERQCAAVRAIRDVELEQTLTGLRL 62
             PKR+ +   K    +  + K  ++E+K  +    EVERQ AA+RAIRDVE+EQ LT LRL
Sbjct:     2 PKRKAKECVKLTEEDRNDEKRIRIEEKKEDFVDEEVERQIAAIRAIRDVEIEQMLTALRL 61

Query:    63 LRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIHAS 122
             LRSYF EEQ+ TPVL FF+ENLP+L++ R+++ G+ E++W+DE+G+ +  N +G D++ S
Sbjct:    62 LRSYFTEEQLHTPVLDFFKENLPDLSISRNEETGEIELKWRDENGDSFAGNENGVDMNYS 121

Query:   123 LLHRMSIGYPYCSGAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQMFGMHEAL 182
             +L R+S+ +       S  GY      VK NLLG DN Q+ + V +  S +QM   H+A 
Sbjct:   122 ILKRLSMRFTDLYSRSSLGGYDLPDN-VKANLLGTDNPQLDNLVFQGTSENQMLPGHDAF 180

Query:   183 RTPGVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEED-NMGAIQE 231
             +TPGV  QRLS G+TPKTLR PK GEM+LSVHGSPLGVY+ED NMGAI E
Sbjct:   181 QTPGVNGQRLSFGMTPKTLRLPKAGEMMLSVHGSPLGVYKEDHNMGAINE 230


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.133   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      235       235   0.00088  113 3  11 23  0.47    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  174 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.29u 0.10s 24.39t   Elapsed:  00:00:01
  Total cpu time:  24.29u 0.10s 24.39t   Elapsed:  00:00:01
  Start:  Sat May 11 01:52:45 2013   End:  Sat May 11 01:52:46 2013

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