BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026687
         (235 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P29336|GTFS_STRDO Glucosyltransferase-S OS=Streptococcus downei GN=gtfS PE=3 SV=1
          Length = 1365

 Score = 35.8 bits (81), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 52   ELEQTLTGLRLLRS---YFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGN 108
            E  Q LTGL+ +     YF+++ +Q      ++EN  NL     D       RWK+ DGN
Sbjct: 1294 ESGQVLTGLQTIDGQTVYFDDKGIQAKGKAVWDEN-GNLRYFDADSGNMLRDRWKNVDGN 1352

Query: 109  FYMDNADG 116
            +Y  N +G
Sbjct: 1353 WYYFNRNG 1360


>sp|Q3K3Z7|PUR9_STRA1 Bifunctional purine biosynthesis protein PurH OS=Streptococcus
           agalactiae serotype Ia (strain ATCC 27591 / A909 / CDC
           SS700) GN=purH PE=3 SV=1
          Length = 515

 Score = 32.0 bits (71), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 3   PKRRGRPAKKALPSNAEEAKESQLEDKDAELFYREVERQCAAVRAIRDVELEQTLTGLR 61
           P++     +KALP++   A   QL  K  EL +  +    AA+R IRD +   T+  L+
Sbjct: 218 PQQDADFYQKALPTDYSIASAKQLNGK--ELSFNNIRDADAAIRIIRDFKASPTVVALK 274


>sp|A8AUA2|PUR9_STRGC Bifunctional purine biosynthesis protein PurH OS=Streptococcus
           gordonii (strain Challis / ATCC 35105 / CH1 / DL1 /
           V288) GN=purH PE=3 SV=1
          Length = 515

 Score = 31.6 bits (70), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 3   PKRRGRPAKKALPSNAEEAKESQLEDKDAELFYREVERQCAAVRAIRDVELEQTLTGLR 61
           P++     +KALP++   A   QL  K  EL +  +    AA+R IRD +   T+  L+
Sbjct: 218 PQQDADFYQKALPTDYSIASAKQLNGK--ELSFNNIRDADAAIRIIRDFKYRPTVVALK 274


>sp|A1CZ18|SLX4_NEOFI Structure-specific endonuclease subunit slx4 OS=Neosartorya
           fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
           NRRL 181) GN=slx4 PE=3 SV=1
          Length = 812

 Score = 30.8 bits (68), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 3/117 (2%)

Query: 111 MDNADGKDIHASLLHRMSIGYPYCSGAPSFSGYGFSSKAVKTNLLGVDNLQIG-DFVLEE 169
           MD A+     ++ L   +         PS +  G S    K++   V+ ++   D V+  
Sbjct: 611 MDAAEKTRKASACLKEEAKSSTALEDKPSHAADGSSQVLTKSSFADVEEIEDSEDEVI-- 668

Query: 170 PSNSQMFGMHEALRTPGVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEEDNM 226
           PS S++   ++   +   +SQ LSV  TP T   P R         SP G+  E  +
Sbjct: 669 PSPSRLQSRYKRHISESRSSQPLSVSATPSTPSSPTRTNADSGTKPSPFGLAAESRL 725


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.133    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,074,809
Number of Sequences: 539616
Number of extensions: 4044244
Number of successful extensions: 8313
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 8312
Number of HSP's gapped (non-prelim): 11
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)