Query 026687
Match_columns 235
No_of_seqs 15 out of 17
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 11:19:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026687.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026687hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10512 Borealin: Cell divisi 96.0 0.0019 4E-08 52.4 0.1 25 200-224 40-65 (116)
2 PF10444 Nbl1_Borealin_N: Nbl1 85.6 3.5 7.5E-05 29.4 5.9 51 33-83 9-59 (59)
3 KOG0595 Serine/threonine-prote 75.3 0.52 1.1E-05 46.1 -1.6 138 43-221 38-182 (429)
4 cd06402 PB1_p62 The PB1 domain 71.9 4.9 0.00011 31.4 3.3 39 78-123 34-72 (87)
5 COG0750 Predicted membrane-ass 60.5 5.9 0.00013 35.3 2.0 47 176-222 21-67 (375)
6 PF08770 SoxZ: Sulphur oxidati 55.3 8.6 0.00019 30.2 1.9 25 85-109 68-93 (100)
7 PF09950 DUF2184: Uncharacteri 49.2 11 0.00025 33.2 1.9 34 58-91 139-179 (249)
8 PF13729 TraF_2: F plasmid tra 41.5 7.5 0.00016 35.1 -0.4 21 180-203 155-175 (273)
9 KOG0842 Transcription factor t 39.4 14 0.00031 34.8 1.0 28 36-63 166-193 (307)
10 cd06404 PB1_aPKC PB1 domain is 38.3 27 0.00059 27.5 2.3 19 93-111 36-54 (83)
11 PF11396 DUF2874: Protein of u 38.0 24 0.00051 23.9 1.7 25 67-91 3-27 (61)
12 COG3611 DnaB Replication initi 37.9 37 0.0008 33.5 3.6 61 19-81 259-319 (417)
13 PF09585 Lin0512_fam: Conserve 31.5 27 0.00059 28.8 1.4 21 41-61 19-39 (113)
14 PF13636 Nol1_Nop2_Fmu_2: pre- 29.4 24 0.00051 27.3 0.7 21 204-224 70-90 (102)
15 TIGR00054 RIP metalloprotease 25.6 43 0.00092 31.6 1.7 37 186-223 32-68 (420)
16 TIGR02058 lin0512_fam conserve 25.3 41 0.00088 28.0 1.4 22 41-62 19-40 (116)
17 PF11629 Mst1_SARAH: C termina 25.1 2.1E+02 0.0046 20.9 4.8 31 29-59 4-34 (49)
18 smart00735 ZM ZASP-like motif. 24.2 33 0.00072 21.1 0.5 17 212-228 5-21 (26)
19 PF14730 DUF4468: Domain of un 24.0 1.1E+02 0.0024 22.9 3.4 38 68-105 11-51 (91)
20 PRK11933 yebU rRNA (cytosine-C 23.4 47 0.001 32.5 1.6 26 200-225 425-453 (470)
21 PF15048 OSTbeta: Organic solu 23.4 54 0.0012 27.7 1.8 16 92-107 103-118 (125)
22 PRK10779 zinc metallopeptidase 23.3 49 0.0011 31.4 1.7 38 186-223 33-70 (449)
23 PF12368 DUF3650: Protein of u 22.4 39 0.00086 22.1 0.6 15 31-45 14-28 (28)
24 cd07158 NR_DBD_Ppar_like The D 22.3 27 0.00058 25.5 -0.2 11 192-202 63-73 (73)
25 PF09424 YqeY: Yqey-like prote 22.3 3.3E+02 0.0071 22.6 6.2 56 28-83 44-107 (143)
26 cd07179 2DBD_NR_DBD2 The secon 21.7 26 0.00057 25.8 -0.3 13 191-203 61-73 (74)
27 PF06448 DUF1081: Domain of Un 21.6 52 0.0011 26.4 1.3 72 128-200 24-103 (118)
28 PF07352 Phage_Mu_Gam: Bacteri 21.4 2.1E+02 0.0045 23.4 4.7 64 35-109 23-88 (149)
29 PF08860 DUF1827: Domain of un 20.7 51 0.0011 26.4 1.1 15 46-60 54-68 (91)
30 COG4540 gpV Phage P2 baseplate 20.2 66 0.0014 28.8 1.8 28 199-226 44-79 (184)
No 1
>PF10512 Borealin: Cell division cycle-associated protein 8 ; InterPro: IPR018867 The chromosomal passenger complex of Aurora B kinase, INCENP, and Survivin has essential regulatory roles at centromeres and the central spindle in mitosis. Cell division cycle-associated protein 8, also known as Borealin, is also a member of the complex. Approximately half of Aurora B in mitotic cells is complexed with INCENP, Borealin, and Survivin. Depletion of Borealin by RNA interference delays mitotic progression and results in kinetochore-spindle mis-attachments and an increase in bipolar spindles associated with ectopic asters []. ; PDB: 2KDD_A.
Probab=95.99 E-value=0.0019 Score=52.39 Aligned_cols=25 Identities=48% Similarity=0.751 Sum_probs=0.4
Q ss_pred cccCCCCCceeEEee-CCCccccccc
Q 026687 200 TLRQPKRGEMLLSVH-GSPLGVYEED 224 (235)
Q Consensus 200 T~RlPK~GEMLLSVh-GSPLGvYkEd 224 (235)
-+|.|+.||+++|.- ||||.++.++
T Consensus 40 ~lR~pr~gE~v~S~~~GSPl~~~~~~ 65 (116)
T PF10512_consen 40 FLRWPRAGERVYSISNGSPLAADNED 65 (116)
T ss_dssp -------------------------S
T ss_pred eeecCCCCCeEEeccCCCccccCCCC
Confidence 589999999999999 9999887743
No 2
>PF10444 Nbl1_Borealin_N: Nbl1 / Borealin N terminal; InterPro: IPR018851 This entry represents the N-terminal domain of borealin, and is also found in the N-terminal-Borealin-like (NBL; YHR199C-A) protein from Saccharomyces cerevisiae (Baker's yeast). NBL is a subunit of the conserved chromosomal passenger complex (CPC; Ipl1p-Sli15p-Bir1p-Nbl1p), which regulates mitotic chromosome segregation. It is not required for the kinase activity of the complex and it mediates the interaction of Sli15p and Bir1p [].; PDB: 2RAW_B 2RAX_Y 2QFA_B.
Probab=85.64 E-value=3.5 Score=29.38 Aligned_cols=51 Identities=20% Similarity=0.159 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhchhhhcchHHHHHHHh
Q 026687 33 LFYREVERQCAAVRAIRDVELEQTLTGLRLLRSYFNEEQMQTPVLQFFEEN 83 (235)
Q Consensus 33 ~~d~EvERqiaAIrAIrDvEiE~~Lt~LRLlRSyfSkEQL~tpvLQfFkEn 83 (235)
=.|.||+.||..+||--+.-+..+..++..-=.++.+.--.++..+|+..+
T Consensus 9 ~fd~Ev~~r~~~lr~~~~~~~~~~~~~~~~~l~riP~~vR~m~~~d~~~~y 59 (59)
T PF10444_consen 9 NFDLEVEERIRRLRAQYENLLQSLRNRLEMELLRIPKAVRKMTMRDFLEKY 59 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHTSBHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhCCHHHHhhcC
Confidence 358899999999999999999999999998888899999999999998753
No 3
>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=75.32 E-value=0.52 Score=46.11 Aligned_cols=138 Identities=19% Similarity=0.251 Sum_probs=88.5
Q ss_pred HHHHHHhhh-----hhhhHHHHHHHHhhhhchhhhcchHHHHHHHhCCCceeeecCCCCeeEEEeecCCCCcccccCCCc
Q 026687 43 AAVRAIRDV-----ELEQTLTGLRLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGK 117 (235)
Q Consensus 43 aAIrAIrDv-----EiE~~Lt~LRLlRSyfSkEQL~tpvLQfFkEnLPNlsvvrNee~g~lElkwkd~~~~~~~~~~d~~ 117 (235)
.||+.|.-. -.|.+++++.+|++. +-||+. +-+++.|-+..=++++.+|||.
T Consensus 38 VAIK~i~~~~l~~k~~e~L~~Ei~iLkel----------------~H~nIV-------~l~d~~~~~~~i~lVMEyC~gG 94 (429)
T KOG0595|consen 38 VAIKCIAKKKLNKKLVELLLSEIKILKEL----------------KHPNIV-------RLLDCIEDDDFIYLVMEYCNGG 94 (429)
T ss_pred EEeeeehhhccCHHHHHHHHHHHHHHHhc----------------CCccee-------eEEEEEecCCeEEEEEEeCCCC
Confidence 477777776 467888888888764 256653 5677889998889999999999
Q ss_pred chhhhhhhhhccCCCCCCCC--CCCCccccchhhhhhcccccccCCcccccccCCCcccccchhhhccCCCccccceeec
Q 026687 118 DIHASLLHRMSIGYPYCSGA--PSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQMFGMHEALRTPGVTSQRLSVG 195 (235)
Q Consensus 118 ~~~aSll~r~S~a~~~~~s~--ps~~gf~fss~avk~sf~~~~~~~~~df~~ee~se~qm~g~~d~lqTPG~~s~RlS~G 195 (235)
|+..-|.++..+-=.-|-.+ --+.|++|--+. +++-+| +-=.|+.+..+.+.... ++.+=--||
T Consensus 95 DLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~~---~IiHRD-LKPQNiLLs~~~~~~~~----------~~LKIADFG 160 (429)
T KOG0595|consen 95 DLSDYIRRRGRLPEATARHFMQQLASALQFLHEN---NIIHRD-LKPQNILLSTTARNDTS----------PVLKIADFG 160 (429)
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---Ceeecc-CCcceEEeccCCCCCCC----------ceEEecccc
Confidence 99888866653210000000 012345665443 777776 66678888887665431 111111145
Q ss_pred cCCccccCCCCCceeEEeeCCCcccc
Q 026687 196 VTPKTLRQPKRGEMLLSVHGSPLGVY 221 (235)
Q Consensus 196 mTPKT~RlPK~GEMLLSVhGSPLGvY 221 (235)
.. |-=.+|+|+-.+-||||=|=
T Consensus 161 fA----R~L~~~~~a~tlcGSplYMA 182 (429)
T KOG0595|consen 161 FA----RFLQPGSMAETLCGSPLYMA 182 (429)
T ss_pred hh----hhCCchhHHHHhhCCccccC
Confidence 43 22239999999999998653
No 4
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=71.86 E-value=4.9 Score=31.44 Aligned_cols=39 Identities=23% Similarity=0.526 Sum_probs=24.9
Q ss_pred HHHHHhCCCceeeecCCCCeeEEEeecCCCCcccccCCCcchhhhh
Q 026687 78 QFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIHASL 123 (235)
Q Consensus 78 QfFkEnLPNlsvvrNee~g~lElkwkd~~~~~~~~~~d~~~~~aSl 123 (235)
+-.++-+|++. ...|.|||+|++|+++-=. ++.+++-.+
T Consensus 34 ~~V~~~f~~l~------~~~ftlky~DeeGDlvtIs-sdeEL~~A~ 72 (87)
T cd06402 34 EKVAAVFPSLR------GKNFQLFWKDEEGDLVAFS-SDEELVMAL 72 (87)
T ss_pred HHHHHHccccC------CCcEEEEEECCCCCEEeec-CHHHHHHHH
Confidence 33455566653 3789999999999886533 344444444
No 5
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=60.46 E-value=5.9 Score=35.25 Aligned_cols=47 Identities=30% Similarity=0.494 Sum_probs=40.6
Q ss_pred cchhhhccCCCccccceeeccCCccccCCCCCceeEEeeCCCccccc
Q 026687 176 FGMHEALRTPGVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYE 222 (235)
Q Consensus 176 ~g~~d~lqTPG~~s~RlS~GmTPKT~RlPK~GEMLLSVhGSPLGvYk 222 (235)
+|--...+--|+.-.++|+||.||.++..++++.-......|||-|.
T Consensus 21 ~gh~~~a~~~~~~v~~f~ig~g~~l~~~~~~~~~~~~i~~~plggyv 67 (375)
T COG0750 21 LGHFWVARRCGVKVERFSIGFGPKLFSRKDKGGTEYVLSAIPLGGYV 67 (375)
T ss_pred HhhHHHHHhcCceeEEEEeccCcceEEEEcCCceEEEEeecCccceE
Confidence 34445667789999999999999999999888799999999999986
No 6
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=55.29 E-value=8.6 Score=30.17 Aligned_cols=25 Identities=36% Similarity=0.736 Sum_probs=18.2
Q ss_pred CCceee-ecCCCCeeEEEeecCCCCc
Q 026687 85 PNLTVL-RDDKNGKFEVRWKDEDGNF 109 (235)
Q Consensus 85 PNlsvv-rNee~g~lElkwkd~~~~~ 109 (235)
|.++.. +..+.|.|+|.|.|++|..
T Consensus 68 P~l~F~~~~~~~g~l~v~~~Dn~G~~ 93 (100)
T PF08770_consen 68 PYLRFSFKGKKSGTLTVTWTDNKGNS 93 (100)
T ss_dssp -EEEEEEEESSSEEEEEEEEETTS-E
T ss_pred CcEEEEEecCCCcEEEEEEEECCCCE
Confidence 555554 6667799999999999854
No 7
>PF09950 DUF2184: Uncharacterized protein conserved in bacteria (DUF2184); InterPro: IPR020049 This entry is represented by Bacteriophage T1, Orf47. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=49.20 E-value=11 Score=33.23 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=25.8
Q ss_pred HHHHHHhhhhchhhhcchHHHHHHHhC-------CCceeee
Q 026687 58 TGLRLLRSYFNEEQMQTPVLQFFEENL-------PNLTVLR 91 (235)
Q Consensus 58 t~LRLlRSyfSkEQL~tpvLQfFkEnL-------PNlsvvr 91 (235)
++..+|-|....+.-.+-+||||++|. |||+|+.
T Consensus 139 ~~~~~L~~~~vs~~~~~Tvl~~l~~n~~~~~~~g~~l~I~~ 179 (249)
T PF09950_consen 139 SQYAYLSSTRVSDATNMTVLEYLKENNIFTAQNGPPLTIVP 179 (249)
T ss_pred HHHhHhheeeecCCCCCCHHHHHHHhchhhhccCCCcEEEE
Confidence 344455555544667889999999999 9999985
No 8
>PF13729 TraF_2: F plasmid transfer operon, TraF, protein
Probab=41.51 E-value=7.5 Score=35.15 Aligned_cols=21 Identities=48% Similarity=0.574 Sum_probs=16.4
Q ss_pred hhccCCCccccceeeccCCccccC
Q 026687 180 EALRTPGVTSQRLSVGVTPKTLRQ 203 (235)
Q Consensus 180 d~lqTPG~~s~RlS~GmTPKT~Rl 203 (235)
-.|.+.| +.||||.|||=+|+
T Consensus 155 ~~~~~~~---~~ls~GvtpK~q~~ 175 (273)
T PF13729_consen 155 KEFTFGG---GPLSVGVTPKYQRI 175 (273)
T ss_pred EEEEECC---cEEEeeeeeEEEEE
Confidence 4555444 89999999999875
No 9
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=39.35 E-value=14 Score=34.85 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 026687 36 REVERQCAAVRAIRDVELEQTLTGLRLL 63 (235)
Q Consensus 36 ~EvERqiaAIrAIrDvEiE~~Lt~LRLl 63 (235)
-|.|||-.=-|=+-..|=|||-.-|||-
T Consensus 166 ~ELERRFrqQRYLSAPERE~LA~~LrLT 193 (307)
T KOG0842|consen 166 YELERRFRQQRYLSAPEREHLASSLRLT 193 (307)
T ss_pred HHHHHHHHhhhccccHhHHHHHHhcCCC
Confidence 3789999988999999999999999984
No 10
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=38.32 E-value=27 Score=27.52 Aligned_cols=19 Identities=26% Similarity=0.705 Sum_probs=15.1
Q ss_pred CCCCeeEEEeecCCCCccc
Q 026687 93 DKNGKFEVRWKDEDGNFYM 111 (235)
Q Consensus 93 ee~g~lElkwkd~~~~~~~ 111 (235)
-+.+-|-+||+|++|+...
T Consensus 36 ~~~q~ft~kw~DEEGDp~t 54 (83)
T cd06404 36 HNDQPFTLKWIDEEGDPCT 54 (83)
T ss_pred CCCCcEEEEEECCCCCcee
Confidence 4557899999999987643
No 11
>PF11396 DUF2874: Protein of unknown function (DUF2874); InterPro: IPR021533 This bacterial family of proteins are probable periplasmic proteins with unknown function. There are between one and four copies of this domain per sequence. ; PDB: 3DUE_A 3U1W_B 3DB7_A 4DSD_A 3ELG_A.
Probab=37.97 E-value=24 Score=23.89 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=19.8
Q ss_pred hchhhhcchHHHHHHHhCCCceeee
Q 026687 67 FNEEQMQTPVLQFFEENLPNLTVLR 91 (235)
Q Consensus 67 fSkEQL~tpvLQfFkEnLPNlsvvr 91 (235)
++..+|-..|..||+.+.|+-.|..
T Consensus 3 i~~~~lP~~v~~~i~~~yp~~~i~~ 27 (61)
T PF11396_consen 3 IPVSELPAAVKNAIKKNYPGAKIKE 27 (61)
T ss_dssp E-GGGS-HHHHHHHHHHSTTSEEEE
T ss_pred cChHHCCHHHHHHHHHHCCCCeEEE
Confidence 4567888999999999999988763
No 12
>COG3611 DnaB Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]
Probab=37.93 E-value=37 Score=33.49 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=51.0
Q ss_pred cccccccchhhhhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhchhhhcchHHHHHH
Q 026687 19 EEAKESQLEDKDAELFYREVERQCAAVRAIRDVELEQTLTGLRLLRSYFNEEQMQTPVLQFFE 81 (235)
Q Consensus 19 ~~~~~~~lee~~~~~~d~EvERqiaAIrAIrDvEiE~~Lt~LRLlRSyfSkEQL~tpvLQfFk 81 (235)
.-+.+...+|.+.|.+|+|..-=+.=|..|+|..|. +++|+|++...++.+|.-+|.-.+-
T Consensus 259 ~~~~q~l~~e~k~~i~~~~~~~p~~~l~~~~~g~i~--~~dl~lve~L~~~~~L~d~ViNvll 319 (417)
T COG3611 259 TEANQNLNTESKKVISDLELTFPLEKLKSIRDGKIT--LEDLKLVEELISDQNLLDGVINVLL 319 (417)
T ss_pred cccccccchhHHHHHHhccccchHHHHHHHHcCCCC--HHHHHHHHHHHHhcCCChhhhhhhh
Confidence 334455556666699999999989999999999998 9999999999999999999876543
No 13
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=31.48 E-value=27 Score=28.82 Aligned_cols=21 Identities=48% Similarity=0.547 Sum_probs=14.6
Q ss_pred HHHHHHHHhhhhhhhHHHHHH
Q 026687 41 QCAAVRAIRDVELEQTLTGLR 61 (235)
Q Consensus 41 qiaAIrAIrDvEiE~~Lt~LR 61 (235)
-.||+||+|||=--+.|-.|+
T Consensus 19 TkAA~RAv~DAI~~nslp~l~ 39 (113)
T PF09585_consen 19 TKAAVRAVRDAISHNSLPGLF 39 (113)
T ss_pred HHHHHHHHHHHHhhcchHHHH
Confidence 479999999995554443444
No 14
>PF13636 Nol1_Nop2_Fmu_2: pre-rRNA processing and ribosome biogenesis; PDB: 3M4X_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A.
Probab=29.43 E-value=24 Score=27.28 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=17.2
Q ss_pred CCCCceeEEeeCCCccccccc
Q 026687 204 PKRGEMLLSVHGSPLGVYEED 224 (235)
Q Consensus 204 PK~GEMLLSVhGSPLGvYkEd 224 (235)
+..|..++.++|-|||.-|-.
T Consensus 70 ~~~G~vlv~~~g~~LG~gk~~ 90 (102)
T PF13636_consen 70 PDKGWVLVTYEGFPLGWGKYV 90 (102)
T ss_dssp --EEEEEEEECCCEEEEEEEE
T ss_pred CCCcEEEEEECCEeeEEEEee
Confidence 468999999999999987754
No 15
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=25.65 E-value=43 Score=31.64 Aligned_cols=37 Identities=32% Similarity=0.580 Sum_probs=33.0
Q ss_pred CccccceeeccCCccccCCCCCceeEEeeCCCcccccc
Q 026687 186 GVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEE 223 (235)
Q Consensus 186 G~~s~RlS~GmTPKT~RlPK~GEMLLSVhGSPLGvYkE 223 (235)
||.-.+.|+||-|+=++- |.||.-.++.=.|||=|.+
T Consensus 32 g~~v~~FsiGfGp~l~~~-~~~~tey~i~~~plGg~v~ 68 (420)
T TIGR00054 32 GIKVERFSIGFGPKILKF-KKNGTEYAISLIPLGGYVK 68 (420)
T ss_pred CCEEEEEEEccCchheEE-ecCCeEEEEEEecCcceEe
Confidence 788899999999997776 6899999999999999975
No 16
>TIGR02058 lin0512_fam conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus.
Probab=25.31 E-value=41 Score=28.01 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhhhhhHHHHHHH
Q 026687 41 QCAAVRAIRDVELEQTLTGLRL 62 (235)
Q Consensus 41 qiaAIrAIrDvEiE~~Lt~LRL 62 (235)
-.||.||+|||=--+.+..|+-
T Consensus 19 TkAA~RAvrDAI~hnsipg~~~ 40 (116)
T TIGR02058 19 TKAAMRAVRNAIASNSMPGIWE 40 (116)
T ss_pred HHHHHHHHHHHHhhccchhHHH
Confidence 4799999999965555554443
No 17
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=25.09 E-value=2.1e+02 Score=20.86 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=23.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 026687 29 KDAELFYREVERQCAAVRAIRDVELEQTLTG 59 (235)
Q Consensus 29 ~~~~~~d~EvERqiaAIrAIrDvEiE~~Lt~ 59 (235)
-+..++..|.++|.+++-.-=+.|||.+..+
T Consensus 4 fLk~ls~~eL~~rl~~LD~~ME~Eieelr~R 34 (49)
T PF11629_consen 4 FLKFLSYEELQQRLASLDPEMEQEIEELRQR 34 (49)
T ss_dssp GGGGS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567889999999999988777777776543
No 18
>smart00735 ZM ZASP-like motif. Short motif (26 amino acids) present in an alpha-actinin-binding protein, ZASP, and similar molecules.
Probab=24.18 E-value=33 Score=21.12 Aligned_cols=17 Identities=29% Similarity=0.696 Sum_probs=13.5
Q ss_pred EeeCCCccccccccccc
Q 026687 212 SVHGSPLGVYEEDNMGA 228 (235)
Q Consensus 212 SVhGSPLGvYkEdNm~A 228 (235)
+-+.+|.|+|..+|.++
T Consensus 5 ~qyn~P~glys~~n~~~ 21 (26)
T smart00735 5 KQYNSPIGLYSSENIAE 21 (26)
T ss_pred cccCCCCCCCCcccHHH
Confidence 34689999999888754
No 19
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=23.98 E-value=1.1e+02 Score=22.88 Aligned_cols=38 Identities=13% Similarity=0.327 Sum_probs=31.0
Q ss_pred chhhhcchHHHHHHHhCCCc-eee--ecCCCCeeEEEeecC
Q 026687 68 NEEQMQTPVLQFFEENLPNL-TVL--RDDKNGKFEVRWKDE 105 (235)
Q Consensus 68 SkEQL~tpvLQfFkEnLPNl-svv--rNee~g~lElkwkd~ 105 (235)
|++||-.-+++||.+++++. |+| -|.|+|.|-.+...+
T Consensus 11 sk~~ly~~~~~W~~~~~~~~~s~I~~~dke~g~I~~~g~~~ 51 (91)
T PF14730_consen 11 SKDQLYDRAKKWLAKNFKSANSVIQYSDKEEGTIIAKGEEW 51 (91)
T ss_pred CHHHHHHHHHHHHHHhcccccceEEEEcCCCCEEEEEEEEE
Confidence 88999999999999999984 333 577889998887554
No 20
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=23.41 E-value=47 Score=32.48 Aligned_cols=26 Identities=19% Similarity=0.521 Sum_probs=21.1
Q ss_pred cccCCC---CCceeEEeeCCCcccccccc
Q 026687 200 TLRQPK---RGEMLLSVHGSPLGVYEEDN 225 (235)
Q Consensus 200 T~RlPK---~GEMLLSVhGSPLGvYkEdN 225 (235)
|+.+.. +|..|++|.|-|||.-|..+
T Consensus 425 ~l~~~~~~~~G~~lv~~~g~~lG~gK~~~ 453 (470)
T PRK11933 425 DIYPQTAPPAGEVIVTYQGQPIGLAKRVG 453 (470)
T ss_pred CccCCCCCCCCEEEEEECCEeeEEEEeeC
Confidence 455543 69999999999999999764
No 21
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=23.37 E-value=54 Score=27.74 Aligned_cols=16 Identities=31% Similarity=0.682 Sum_probs=12.6
Q ss_pred cCCCCeeEEEeecCCC
Q 026687 92 DDKNGKFEVRWKDEDG 107 (235)
Q Consensus 92 Nee~g~lElkwkd~~~ 107 (235)
+-.+|++||||||..-
T Consensus 103 ~l~qg~ielk~kD~~~ 118 (125)
T PF15048_consen 103 NLAQGEIELKWKDGPV 118 (125)
T ss_pred CccCccEEEEecccce
Confidence 3356999999999763
No 22
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=23.30 E-value=49 Score=31.37 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=34.2
Q ss_pred CccccceeeccCCccccCCCCCceeEEeeCCCcccccc
Q 026687 186 GVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEE 223 (235)
Q Consensus 186 G~~s~RlS~GmTPKT~RlPK~GEMLLSVhGSPLGvYkE 223 (235)
||.-.+.|+||-|+=++-.++||.-.++.=.|||=|..
T Consensus 33 gv~V~~FsiGfGp~l~~~~~~~~Tey~i~~iPlGGyVk 70 (449)
T PRK10779 33 GVRVERFSIGFGKALWRRTDRQGTEYVIALIPLGGYVK 70 (449)
T ss_pred CCeeeEEEeecChhHeeEecCCCcEEEEEEEcCCCeee
Confidence 77888999999999998777899999999999999954
No 23
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=22.38 E-value=39 Score=22.07 Aligned_cols=15 Identities=33% Similarity=0.282 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHHH
Q 026687 31 AELFYREVERQCAAV 45 (235)
Q Consensus 31 ~~~~d~EvERqiaAI 45 (235)
..|+++||+.|++||
T Consensus 14 h~ls~ee~~~RL~~i 28 (28)
T PF12368_consen 14 HGLSEEEVAERLAAI 28 (28)
T ss_pred cCCCHHHHHHHHHcC
Confidence 358999999999986
No 24
>cd07158 NR_DBD_Ppar_like The DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) like nuclear receptor family. The DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) like nuclear receptor family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. These domains interact with specific DNA sites upstream of the target gene and modulate the rate of transcriptional initiation. This family includes three known types of nuclear receptors: peroxisome proliferator-activated receptors (PPAR), REV-ERB receptors and Drosophila ecdysone-induced protein 78 (E78). Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, PPAR-like receptors have a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserved hinge and a C-terminal ligand binding domain (LBD).
Probab=22.32 E-value=27 Score=25.49 Aligned_cols=11 Identities=45% Similarity=0.797 Sum_probs=9.6
Q ss_pred eeeccCCcccc
Q 026687 192 LSVGVTPKTLR 202 (235)
Q Consensus 192 lS~GmTPKT~R 202 (235)
|.+||+|+.+|
T Consensus 63 l~vGM~~~~v~ 73 (73)
T cd07158 63 LSVGMSRNAVR 73 (73)
T ss_pred hHccCChHHcC
Confidence 77999999876
No 25
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=22.31 E-value=3.3e+02 Score=22.60 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=42.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhhh----chhhhcchHHHHHHHh
Q 026687 28 DKDAELFYREVERQCAAVRAIRDVEL----EQTLTGLRLLRSYF----NEEQMQTPVLQFFEEN 83 (235)
Q Consensus 28 e~~~~~~d~EvERqiaAIrAIrDvEi----E~~Lt~LRLlRSyf----SkEQL~tpvLQfFkEn 83 (235)
+.....+..++..|-.||...+.+.- +.-..++-++++|+ |+|+++.=+-+.+.|.
T Consensus 44 ~~v~~vi~k~iKqr~ea~e~y~~agR~dlae~e~~Ei~iL~~yLP~~lseeEi~~~v~~~i~e~ 107 (143)
T PF09424_consen 44 EEVIAVIRKEIKQRKEAAEQYEKAGRPDLAEKEQAEIEILEEYLPKQLSEEEIEAIVEEAIAEL 107 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHGGGS-----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHHh
Confidence 34457888899999999998887665 44567888999996 7788888888887776
No 26
>cd07179 2DBD_NR_DBD2 The second DNA-binding domain (DBD) of the 2DBD nuclear receptor is composed of two C4-type zinc fingers. The second DNA-binding domain (DBD) of the 2DBD nuclear receptor (NR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. NRs interact with specific DNA sites upstream of the target gene and modulate the rate of transcriptional initiation. The proteins contain two DBDs in tandem, probably resulting from an ancient recombination event. The 2DBD-NRs are found only in flatworm species, mollusks and arthropods. Their biological function is unknown.
Probab=21.67 E-value=26 Score=25.80 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=10.8
Q ss_pred ceeeccCCccccC
Q 026687 191 RLSVGVTPKTLRQ 203 (235)
Q Consensus 191 RlS~GmTPKT~Rl 203 (235)
-|.+||+|+.+|+
T Consensus 61 Cl~vGM~~~~v~~ 73 (74)
T cd07179 61 CLAVGMSKTGSRI 73 (74)
T ss_pred HHHhCCCHhHeeC
Confidence 3679999999986
No 27
>PF06448 DUF1081: Domain of Unknown Function (DUF1081); InterPro: IPR009454 This entry represents a conserved open beta-sheet domain found in several lipid transport proteins, including vitellogenin and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: heavy chain lipovitellin (lipovitellin-1), phosvitin, light chain lipovitellin (lipovitellin-2), and a von Willebrand factor type D domain (YGP40) [, ]. In vitellinogen, this domain is often found as part of the lipovitellin-1 peptide product. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport
Probab=21.65 E-value=52 Score=26.36 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=44.1
Q ss_pred ccCCCCCCCCCCCCccccchhhhhhcccccccCCcccccccCCCcccc---cchhhhccCCCccccc-e----eeccCCc
Q 026687 128 SIGYPYCSGAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQM---FGMHEALRTPGVTSQR-L----SVGVTPK 199 (235)
Q Consensus 128 S~a~~~~~s~ps~~gf~fss~avk~sf~~~~~~~~~df~~ee~se~qm---~g~~d~lqTPG~~s~R-l----S~GmTPK 199 (235)
++.||+-++..+++.|-+++++.=.=+|.-++ .++.+.+...-+.|- --..=.|+|||...+| . +++..|+
T Consensus 24 ~~~~p~~~~~~~~p~fPL~Gp~~f~l~Lektd-~~~~Y~~~~~~~~~~~~~~~~~l~~~tpGsk~~r~~~~~~~~~~~~~ 102 (118)
T PF06448_consen 24 DVSYPNASSTNSAPYFPLSGPAKFSLELEKTD-SVKGYHFKATYELQRGGDDSFKLVFDTPGSKVPREASLTLEYNRKPN 102 (118)
T ss_pred ccccCCccccccccccccCCCEEEEEEEEeCC-CeeEEEEEEEEccccCccceEEEEEECCCCCCCeEEEEEEEeccCCc
Confidence 45788777777788888888876555666554 566664433322222 1123468999998444 3 3555555
Q ss_pred c
Q 026687 200 T 200 (235)
Q Consensus 200 T 200 (235)
|
T Consensus 103 ~ 103 (118)
T PF06448_consen 103 T 103 (118)
T ss_pred e
Confidence 5
No 28
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=21.43 E-value=2.1e+02 Score=23.36 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhchhhhcchHHHHHHHhCCCceee--ecCCCCeeEEEeecCCCCc
Q 026687 35 YREVERQCAAVRAIRDVELEQTLTGLRLLRSYFNEEQMQTPVLQFFEENLPNLTVL--RDDKNGKFEVRWKDEDGNF 109 (235)
Q Consensus 35 d~EvERqiaAIrAIrDvEiE~~Lt~LRLlRSyfSkEQL~tpvLQfFkEnLPNlsvv--rNee~g~lElkwkd~~~~~ 109 (235)
..++..+|++|++=.+.+++.+..++ +.|+..+-+|++.|.-.+.=. .+--+| .|+|+-.-..+
T Consensus 23 ~~~~~~~I~~i~~~~~~~~~~l~~~i---------~~l~~~l~~y~e~~r~e~~k~Ks~~l~~G--~v~~R~~~~~~ 88 (149)
T PF07352_consen 23 EAEANDEIARIKEWYEAEIAPLQNRI---------EYLEGLLQAYAEANRDELTKKKSLKLPFG--TVGFRKSTPKV 88 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHH---------HHHHHHHHHHHHCTHHHH-----EE-SS---EE---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCHHhcccceEEEcCCe--eEEEEecCCcc
Confidence 33455556666665555555555544 456677888998887666611 111123 46776665533
No 29
>PF08860 DUF1827: Domain of unknown function (DUF1827); InterPro: IPR014959 This presumed domain has no known function. ; PDB: 2QZI_B.
Probab=20.67 E-value=51 Score=26.38 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=9.8
Q ss_pred HHHhhhhhhhHHHHH
Q 026687 46 RAIRDVELEQTLTGL 60 (235)
Q Consensus 46 rAIrDvEiE~~Lt~L 60 (235)
|||++.|||-++.+|
T Consensus 54 R~I~~~EIefi~~~l 68 (91)
T PF08860_consen 54 RAIKEAEIEFIIERL 68 (91)
T ss_dssp S---HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999887654
No 30
>COG4540 gpV Phage P2 baseplate assembly protein gpV [General function prediction only]
Probab=20.21 E-value=66 Score=28.83 Aligned_cols=28 Identities=36% Similarity=0.480 Sum_probs=22.9
Q ss_pred ccccCCCCCc--eeEEeeCCC------ccccccccc
Q 026687 199 KTLRQPKRGE--MLLSVHGSP------LGVYEEDNM 226 (235)
Q Consensus 199 KT~RlPK~GE--MLLSVhGSP------LGvYkEdNm 226 (235)
||-++|..|| |+||--|-+ .|||.+++-
T Consensus 44 R~ww~PsiGEQV~vl~~~g~~~~~~~l~Gvys~~~~ 79 (184)
T COG4540 44 RTWWLPSIGEQVVVLSPSGGEALGGVLPGVYSSVFT 79 (184)
T ss_pred ccccCCCCCceEEEEcCCCCcccceEEecccccCCC
Confidence 7889999999 677877766 789988764
Done!