Query 026687
Match_columns 235
No_of_seqs 15 out of 17
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 19:39:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026687.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026687hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ktr_A Sequestosome-1; autopha 71.8 3.3 0.00011 32.9 3.6 40 77-123 63-102 (117)
2 3elg_A Uncharacterized peripla 71.4 3.6 0.00012 31.7 3.7 39 67-105 8-52 (128)
3 2kkc_A Sequestosome-1; P62, PB 69.3 3 0.0001 32.2 2.8 39 78-123 49-87 (102)
4 3db7_A Putative calcium-regula 45.5 12 0.00041 28.8 2.5 40 67-106 8-52 (127)
5 4dsd_A Putative periplasmic pr 43.4 14 0.00048 28.7 2.6 39 67-105 7-51 (129)
6 2frx_A Hypothetical protein YE 40.8 9.3 0.00032 35.1 1.4 26 199-224 428-456 (479)
7 1vd2_A Protein kinase C, IOTA 37.6 17 0.00059 27.3 2.2 29 94-123 43-71 (89)
8 4dq6_A Putative pyridoxal phos 36.2 86 0.003 25.3 6.3 74 40-130 277-353 (391)
9 2p2u_A HOST-nuclease inhibitor 35.0 72 0.0025 25.8 5.7 135 37-204 27-167 (171)
10 2yvq_A Carbamoyl-phosphate syn 31.2 15 0.00053 28.4 1.1 14 201-215 20-33 (143)
11 3db7_A Putative calcium-regula 28.1 53 0.0018 25.2 3.6 41 65-105 70-111 (127)
12 2oxg_Z SOXZ protein; immunoglo 27.0 32 0.0011 26.2 2.2 25 85-109 73-98 (108)
13 1v8h_A Sulfur oxidation protei 26.0 37 0.0013 25.7 2.4 25 85-109 72-97 (107)
14 3c8l_A FTSZ-like protein of un 25.7 25 0.00087 28.2 1.4 17 41-57 23-39 (122)
15 3kax_A Aminotransferase, class 25.4 1.5E+02 0.0051 23.8 5.9 46 40-94 269-316 (383)
16 3m4x_A NOL1/NOP2/SUN family pr 25.2 20 0.0007 33.0 0.9 25 200-224 416-441 (456)
17 2b0f_A Picornain 3C (protease 24.6 12 0.0004 31.3 -0.8 11 61-71 172-182 (182)
18 3q3y_A HEVB EV93 3C protease; 24.4 13 0.00045 31.6 -0.5 13 61-73 175-187 (191)
19 3dzz_A Putative pyridoxal 5'-p 23.0 1.9E+02 0.0066 23.2 6.2 45 41-94 274-320 (391)
20 3u1w_A Hypothetical periplasmi 22.6 57 0.0019 27.5 3.1 36 71-106 138-174 (253)
21 3b1j_C CP12; alpha/beta fold, 20.8 15 0.00052 22.3 -0.6 16 215-230 4-19 (26)
22 1loi_A Cyclic 3',5'-AMP specif 20.2 42 0.0014 20.7 1.3 13 74-86 1-13 (26)
23 1bl0_A Protein (multiple antib 20.1 12 0.00042 27.4 -1.4 40 180-221 86-127 (129)
24 4dcd_A Protease 3C, genome pol 20.0 22 0.00075 30.1 -0.0 11 61-71 180-190 (190)
No 1
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=71.77 E-value=3.3 Score=32.89 Aligned_cols=40 Identities=18% Similarity=0.409 Sum_probs=27.8
Q ss_pred HHHHHHhCCCceeeecCCCCeeEEEeecCCCCcccccCCCcchhhhh
Q 026687 77 LQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIHASL 123 (235)
Q Consensus 77 LQfFkEnLPNlsvvrNee~g~lElkwkd~~~~~~~~~~d~~~~~aSl 123 (235)
.+..++-+|+|. ...|.|+|+|++|+++-= +++.+++-++
T Consensus 63 ~~kV~~lFp~L~------~~~f~l~YkDEdGDlItI-SsDeEL~~Al 102 (117)
T 2ktr_A 63 LSRVAVLFPALR------PGGFQAHYRAERGDLVAF-SSDEELTMAM 102 (117)
T ss_dssp HHHHHHHCTTSC------SSCEEEEEECTTCCEEEE-CSHHHHHHHH
T ss_pred HHHHHHHccccC------CCcEEEEEECCCCCEEEe-cCHHHHHHHH
Confidence 445566777775 346999999999998753 4555555554
No 2
>3elg_A Uncharacterized periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG; HET: CIT; 1.64A {Bacteroides vulgatus atcc 8482} SCOP: d.98.2.1
Probab=71.45 E-value=3.6 Score=31.70 Aligned_cols=39 Identities=10% Similarity=0.303 Sum_probs=30.7
Q ss_pred hchhhhcchHHHHHHHhCCCcee--eecCC----CCeeEEEeecC
Q 026687 67 FNEEQMQTPVLQFFEENLPNLTV--LRDDK----NGKFEVRWKDE 105 (235)
Q Consensus 67 fSkEQL~tpvLQfFkEnLPNlsv--vrNee----~g~lElkwkd~ 105 (235)
++..||-.+|.+|++.+.|+..| +.-+. .+..||+-+++
T Consensus 8 I~~~~LP~~~~~fi~~~fp~~~i~~v~~e~~~~~~~~YeV~l~ng 52 (128)
T 3elg_A 8 RDVNKLPVAAREMIGKHFSQTKVAYIKIEKDLFQTTSYDVKLADG 52 (128)
T ss_dssp CCGGGSCHHHHHHHHHHCTTSCEEEEEEEECTTCCEEEEEEETTS
T ss_pred cChHHCCHHHHHHHHHHCCCCceEEEEEEcccCcCceEEEEECCC
Confidence 45678999999999999999999 64443 26788887754
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=69.27 E-value=3 Score=32.18 Aligned_cols=39 Identities=15% Similarity=0.397 Sum_probs=26.9
Q ss_pred HHHHHhCCCceeeecCCCCeeEEEeecCCCCcccccCCCcchhhhh
Q 026687 78 QFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIHASL 123 (235)
Q Consensus 78 QfFkEnLPNlsvvrNee~g~lElkwkd~~~~~~~~~~d~~~~~aSl 123 (235)
+..++-+|+|. ...|.|+|+|++|+++- .+++.+++-++
T Consensus 49 ~~V~~lFp~l~------~~~f~l~Y~DedGDlIt-iSsDeEL~~Al 87 (102)
T 2kkc_A 49 SRVAVLFPALR------PGGFQAHYRAERGDLVA-FSSDEELTMAM 87 (102)
T ss_dssp HHHHHHCTTSC------SSCEEEEEECTTCCEEE-ECSHHHHHHHH
T ss_pred HHHHHHccccC------CCcEEEEEECCCCCEEE-ecCHHHHHHHH
Confidence 34455667775 35699999999999875 34555666555
No 4
>3db7_A Putative calcium-regulated periplasmic protein; structural genomics, joint center for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron} SCOP: d.98.2.1 PDB: 3due_A*
Probab=45.52 E-value=12 Score=28.84 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=31.7
Q ss_pred hchhhhcchHHHHHHHhCCCceeeecCC-CC----eeEEEeecCC
Q 026687 67 FNEEQMQTPVLQFFEENLPNLTVLRDDK-NG----KFEVRWKDED 106 (235)
Q Consensus 67 fSkEQL~tpvLQfFkEnLPNlsvvrNee-~g----~lElkwkd~~ 106 (235)
++..||-..|.+|++.+.||..|+.=+. .+ ..||...++.
T Consensus 8 i~~~~LP~~a~~fi~~~Fp~~~i~~ve~~~~~~~~~YeV~~~~G~ 52 (127)
T 3db7_A 8 IQVTQMPQLAQQFIKQHFSDSKVALAKMESDFLYKSYEVIFTNGN 52 (127)
T ss_dssp ECGGGSCHHHHHHHHHHCTTSCEEEEEEEEETTEEEEEEEETTSC
T ss_pred cChHHcCHHHHHHHHHHCCCCceEEEEEecCCccceEEEEECCCc
Confidence 5678999999999999999999986552 23 6888877653
No 5
>4dsd_A Putative periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.75A {Bacteroides ovatus}
Probab=43.40 E-value=14 Score=28.67 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=31.0
Q ss_pred hchhhhcchHHHHHHHhCCCceeeecCCC------CeeEEEeecC
Q 026687 67 FNEEQMQTPVLQFFEENLPNLTVLRDDKN------GKFEVRWKDE 105 (235)
Q Consensus 67 fSkEQL~tpvLQfFkEnLPNlsvvrNee~------g~lElkwkd~ 105 (235)
++..||-..|.+|++.+.||..|+.=+.. +..||...++
T Consensus 7 i~~~~LP~~a~~fi~~~Fp~~~i~~ve~e~~~~~~~~YeV~l~~G 51 (129)
T 4dsd_A 7 KDMNQLPLPARNFINSNFTKPQVAHIKIDKDMMESTKYEVVLMDG 51 (129)
T ss_dssp CCGGGSCHHHHHHHHHHSSSCCEEEEEEEECTTSCEEEEEEETTS
T ss_pred cChhhCCHHHHHHHHHHCCCCceEEEEEecCcCCCccEEEEECCC
Confidence 46678999999999999999999865532 3678877764
No 6
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=40.82 E-value=9.3 Score=35.11 Aligned_cols=26 Identities=12% Similarity=0.337 Sum_probs=21.8
Q ss_pred ccccCC---CCCceeEEeeCCCccccccc
Q 026687 199 KTLRQP---KRGEMLLSVHGSPLGVYEED 224 (235)
Q Consensus 199 KT~RlP---K~GEMLLSVhGSPLGvYkEd 224 (235)
.|+.++ .+|..|++|+|.|||.-|-.
T Consensus 428 e~i~~~~~~~~G~vlv~~~g~pLG~gK~~ 456 (479)
T 2frx_A 428 RDVYPQAAPVADDVLVTFQHQPIGLAKRI 456 (479)
T ss_dssp CCCCCSSCCSCSEEEEEETTEEEEEEECT
T ss_pred CCCcCCCCCCCCEEEEEECCEeeEEEEee
Confidence 466675 58999999999999998865
No 7
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=37.59 E-value=17 Score=27.28 Aligned_cols=29 Identities=17% Similarity=0.477 Sum_probs=18.5
Q ss_pred CCCeeEEEeecCCCCcccccCCCcchhhhh
Q 026687 94 KNGKFEVRWKDEDGNFYMDNADGKDIHASL 123 (235)
Q Consensus 94 e~g~lElkwkd~~~~~~~~~~d~~~~~aSl 123 (235)
....|-|||+|++|+.+-= .++.++...+
T Consensus 43 ~~~~f~lky~DEeGD~iti-sSd~EL~eAl 71 (89)
T 1vd2_A 43 NEQLFTMKWIDEEGDPCTV-SSQLELEEAF 71 (89)
T ss_dssp SSCCEEEEECCSSSCCEEC-CSHHHHHHHH
T ss_pred CCCeEEEEEECCCCCcccc-cCHHHHHHHH
Confidence 3466999999999766432 4444444443
No 8
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=36.18 E-value=86 Score=25.31 Aligned_cols=74 Identities=18% Similarity=0.282 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhh--hhhHHHHHHHHhhhhchhhhcchHHHHHHHhCCCceeeecCCCCeeE-EEeecCCCCcccccCCC
Q 026687 40 RQCAAVRAIRDVE--LEQTLTGLRLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFE-VRWKDEDGNFYMDNADG 116 (235)
Q Consensus 40 RqiaAIrAIrDvE--iE~~Lt~LRLlRSyfSkEQL~tpvLQfFkEnLPNlsvvrNee~g~lE-lkwkd~~~~~~~~~~d~ 116 (235)
-+.+|+.|+++.+ ++.+..+++-.|.++ .+.+++.+|.+.+++.+. +-+- ++..+. ..+.
T Consensus 277 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l---------~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~ 339 (391)
T 4dq6_A 277 SLVATEASYNNGESWLESFLEYLESNIDFA---------IKYINENMPKLKVRKPEG-TYLLWVDFSAL-------GLSD 339 (391)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHH---------HHHHHHHCTTSEECCCSB-SSEEEEECGGG-------CCCH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHH---------HHHHHhhCCCCEecCCCc-cEEEEEEhhhc-------CCCH
Confidence 3566777777643 455555555555544 456777789998887654 3332 444331 1244
Q ss_pred cchhhhhhhhhccC
Q 026687 117 KDIHASLLHRMSIG 130 (235)
Q Consensus 117 ~~~~aSll~r~S~a 130 (235)
..+...++.+-.+.
T Consensus 340 ~~~~~~l~~~~gi~ 353 (391)
T 4dq6_A 340 EELESILVQKGKVA 353 (391)
T ss_dssp HHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhCCEE
Confidence 55655565553343
No 9
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=35.02 E-value=72 Score=25.85 Aligned_cols=135 Identities=10% Similarity=0.074 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHh-h-hhchhhhcchHHHHHHHhCCCceee-ecCCCCeeEEEeecCCCCccccc
Q 026687 37 EVERQCAAVRAIRDVELEQTLTGLRLLR-S-YFNEEQMQTPVLQFFEENLPNLTVL-RDDKNGKFEVRWKDEDGNFYMDN 113 (235)
Q Consensus 37 EvERqiaAIrAIrDvEiE~~Lt~LRLlR-S-yfSkEQL~tpvLQfFkEnLPNlsvv-rNee~g~lElkwkd~~~~~~~~~ 113 (235)
|.+|.++.|-+.-+.||+.+-.+..=.- . -=+.+.|+..+-+|++.|.+.|..- +--+..--+|.|+-.-.-+ .
T Consensus 27 ~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~elf~k~Kt~~l~~G~v~~R~~~~~v---~ 103 (171)
T 2p2u_A 27 TIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATFATLNKTEMFKDRKSLDLGFGTIGFRLSTQIV---Q 103 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC---CCBCSSCBCCCCCCCCCC---C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCCCeEEEeCCEEEEEEeCCCcc---c
Confidence 4555555555555555555433322111 0 1123567778899999997766321 1223334467888766533 1
Q ss_pred CCCcchhhhhhhhh-ccCCCCCCCCCCCCccccchhhhhhcccccccCCcccccccCCCcccccchhhhccCCCccccce
Q 026687 114 ADGKDIHASLLHRM-SIGYPYCSGAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQMFGMHEALRTPGVTSQRL 192 (235)
Q Consensus 114 ~d~~~~~aSll~r~-S~a~~~~~s~ps~~gf~fss~avk~sf~~~~~~~~~df~~ee~se~qm~g~~d~lqTPG~~s~Rl 192 (235)
..+.++ +.+|.+| ++++.+|.-.. -+...++++. .++ +++.-+||+-.-
T Consensus 104 ~~~~~~-~~vle~Lk~~gl~~~Ir~k----eevnK~al~~-----------------~~~-------~~~~~~Gv~v~~- 153 (171)
T 2p2u_A 104 MSKITK-DMTLERLRQFGISEGIRIK----EDVNKEAMQG-----------------WPD-------ERLEMVGLKRRT- 153 (171)
T ss_dssp CTTCCH-HHHHHHHHHTTCCTTCCCC----CCCCHHHHTT-----------------SCH-------HHHHHTTCCCCC-
T ss_pred cccCCH-HHHHHHHHHCCcHhheeec----cccCHHHHhc-----------------Ccc-------cceeeCCeEEEe-
Confidence 111222 5666666 66777777642 2233333332 111 355678887755
Q ss_pred e--eccCCccccCC
Q 026687 193 S--VGVTPKTLRQP 204 (235)
Q Consensus 193 S--~GmTPKT~RlP 204 (235)
+ |...|+...+.
T Consensus 154 ~e~F~ie~~~~~~~ 167 (171)
T 2p2u_A 154 TDAFYIEINREEVA 167 (171)
T ss_dssp CCCCCCCCC-----
T ss_pred cCcEEEEEchhhhh
Confidence 4 77777766654
No 10
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=31.23 E-value=15 Score=28.39 Aligned_cols=14 Identities=21% Similarity=0.814 Sum_probs=12.7
Q ss_pred ccCCCCCceeEEeeC
Q 026687 201 LRQPKRGEMLLSVHG 215 (235)
Q Consensus 201 ~RlPK~GEMLLSVhG 215 (235)
.+||+.| .|+|||.
T Consensus 20 ~~lP~~g-vliSv~d 33 (143)
T 2yvq_A 20 FKIPQKG-ILIGIQQ 33 (143)
T ss_dssp CCCCCSE-EEEECCG
T ss_pred CCCCCCC-EEEEecc
Confidence 5789999 9999997
No 11
>3db7_A Putative calcium-regulated periplasmic protein; structural genomics, joint center for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron} SCOP: d.98.2.1 PDB: 3due_A*
Probab=28.07 E-value=53 Score=25.17 Aligned_cols=41 Identities=15% Similarity=0.369 Sum_probs=31.3
Q ss_pred hhhchhhhcchHHHHHHHhCCCceeeecC-CCCeeEEEeecC
Q 026687 65 SYFNEEQMQTPVLQFFEENLPNLTVLRDD-KNGKFEVRWKDE 105 (235)
Q Consensus 65 SyfSkEQL~tpvLQfFkEnLPNlsvvrNe-e~g~lElkwkd~ 105 (235)
+.+...+|-.+|.+|.+.+.||..|+.=+ +.+..||+-.+.
T Consensus 70 ~~ip~~~LP~~i~~~I~~~yp~~~I~~ie~~~~~YeV~L~ng 111 (127)
T 3db7_A 70 TSVPVAIIPAAIQKYVTTNYPDAKVLKIERDKKDYEVKLSNR 111 (127)
T ss_dssp SCCCGGGSCHHHHHHHHHHCTTCCEEEEEECSSEEEEEETTS
T ss_pred cCcChHHCCHHHHHHHHHHCCCCeEEEEEEECCEEEEEECCC
Confidence 35566789999999999999999988544 346677777654
No 12
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=26.96 E-value=32 Score=26.19 Aligned_cols=25 Identities=32% Similarity=0.743 Sum_probs=18.5
Q ss_pred CCceee-ecCCCCeeEEEeecCCCCc
Q 026687 85 PNLTVL-RDDKNGKFEVRWKDEDGNF 109 (235)
Q Consensus 85 PNlsvv-rNee~g~lElkwkd~~~~~ 109 (235)
|.++.. +..+.|.|.+.|.|++|..
T Consensus 73 P~~~F~~~~~~~g~l~v~~~Dn~G~~ 98 (108)
T 2oxg_Z 73 PYFEFDAKVDAAGEFKFTWYDDDGSV 98 (108)
T ss_dssp CEEEEEEEECSSEEEEEEEEETTSCE
T ss_pred CeEEEEEecCCCcEEEEEEEECCCCE
Confidence 555554 4456689999999999754
No 13
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=26.05 E-value=37 Score=25.74 Aligned_cols=25 Identities=32% Similarity=0.654 Sum_probs=18.5
Q ss_pred CCceee-ecCCCCeeEEEeecCCCCc
Q 026687 85 PNLTVL-RDDKNGKFEVRWKDEDGNF 109 (235)
Q Consensus 85 PNlsvv-rNee~g~lElkwkd~~~~~ 109 (235)
|.++.. +..+.|.|.+.|.|++|..
T Consensus 72 P~~~F~~~~~~~g~l~v~~~Dn~G~~ 97 (107)
T 1v8h_A 72 PLYAFKFKAEKAGTFTIKLKDTDGDT 97 (107)
T ss_dssp CEEEEEEECCSCEEEEEEEEETTSCE
T ss_pred CeEEEEEecCCCceEEEEEEECCCCE
Confidence 555554 5556688999999999754
No 14
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=25.70 E-value=25 Score=28.23 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=12.2
Q ss_pred HHHHHHHHhhhhhhhHH
Q 026687 41 QCAAVRAIRDVELEQTL 57 (235)
Q Consensus 41 qiaAIrAIrDvEiE~~L 57 (235)
-.||.||+|||=--+.|
T Consensus 23 TkAA~RAvrDAI~~nsl 39 (122)
T 3c8l_A 23 TIAASRAVRNAIAHNAL 39 (122)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 47999999999433333
No 15
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=25.37 E-value=1.5e+02 Score=23.84 Aligned_cols=46 Identities=13% Similarity=0.262 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhh--hhhHHHHHHHHhhhhchhhhcchHHHHHHHhCCCceeeecCC
Q 026687 40 RQCAAVRAIRDVE--LEQTLTGLRLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDK 94 (235)
Q Consensus 40 RqiaAIrAIrDvE--iE~~Lt~LRLlRSyfSkEQL~tpvLQfFkEnLPNlsvvrNee 94 (235)
-+.+|+.|+++.+ ++.+..+++-.|.++ .+.+++.+|.+.+++.+.
T Consensus 269 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l---------~~~l~~~~~~~~~~~~~~ 316 (383)
T 3kax_A 269 AYTAMQSAYTECNDWLNEIRFYIEDNAKFA---------CEYIKDHIPTLSVMKPEG 316 (383)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHH---------HHHHHHHCTTCEECCCSB
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---------HHHHHhhCCCceEecCCc
Confidence 3556777777643 455555555555443 456777789988876544
No 16
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=25.24 E-value=20 Score=32.98 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=19.9
Q ss_pred cccCC-CCCceeEEeeCCCccccccc
Q 026687 200 TLRQP-KRGEMLLSVHGSPLGVYEED 224 (235)
Q Consensus 200 T~RlP-K~GEMLLSVhGSPLGvYkEd 224 (235)
|+.++ ++|..|+.++|.|||.-|-.
T Consensus 416 ~i~~~~~~g~~lv~~~g~~lG~~k~~ 441 (456)
T 3m4x_A 416 TFQRDGNQGWVLLVLDKIPVGFGKQV 441 (456)
T ss_dssp CEECSCCCEEEEEEETTEEEEEEEEE
T ss_pred CcccCCCCCEEEEEECCEeEEEEEee
Confidence 44443 27999999999999998855
No 17
>2b0f_A Picornain 3C (protease 3C) (P3C); beta barrel, hydrolase-hydrolase inhibitor complex; HET: CA1; NMR {Human rhinovirus 14} PDB: 2in2_A
Probab=24.62 E-value=12 Score=31.33 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=8.5
Q ss_pred HHHhhhhchhh
Q 026687 61 RLLRSYFNEEQ 71 (235)
Q Consensus 61 RLlRSyfSkEQ 71 (235)
+|.||||+++|
T Consensus 172 ~l~r~yf~~~q 182 (182)
T 2b0f_A 172 QLKKQYFVEKQ 182 (182)
T ss_dssp ECCHHHHHTC-
T ss_pred hhhHhhhcccC
Confidence 57899999887
No 18
>3q3y_A HEVB EV93 3C protease; cysteine trypsin-like protease, 3C cysteine protease (picorn antiviral compound 1 (AG7404); HET: XNV; 1.32A {Human enterovirus B} SCOP: b.47.1.4 PDB: 3q3x_A* 3ruo_A* 3zyd_A 3zz5_A* 3zz6_A* 3zz7_A* 3zz8_A* 3zz9_A* 3zza_A* 3zzb_A* 2ztx_A 2vb0_A 2zty_A 2ztz_A 2zu3_A* 3zye_A 3zz3_A 2zu1_A 3zz4_A 3zzc_A* ...
Probab=24.43 E-value=13 Score=31.64 Aligned_cols=13 Identities=69% Similarity=1.032 Sum_probs=7.2
Q ss_pred HHHhhhhchhhhc
Q 026687 61 RLLRSYFNEEQMQ 73 (235)
Q Consensus 61 RLlRSyfSkEQL~ 73 (235)
+|.||||.+||-+
T Consensus 175 ~L~r~yf~~~~~~ 187 (191)
T 3q3y_A 175 ALLRHYFNEEQHH 187 (191)
T ss_dssp ECCGGGCC-----
T ss_pred ehhHhhhChhhhh
Confidence 5889999999954
No 19
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=23.02 E-value=1.9e+02 Score=23.24 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhh--hhhHHHHHHHHhhhhchhhhcchHHHHHHHhCCCceeeecCC
Q 026687 41 QCAAVRAIRDVE--LEQTLTGLRLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDK 94 (235)
Q Consensus 41 qiaAIrAIrDvE--iE~~Lt~LRLlRSyfSkEQL~tpvLQfFkEnLPNlsvvrNee 94 (235)
+.+|..|+++.+ ++.+..+++-.+.|+ .+.+++.+|.+.++..+.
T Consensus 274 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~l---------~~~l~~~~~~~~~~~~~~ 320 (391)
T 3dzz_A 274 IPAAIAAYEEGHDWLRELKQVLRDNFAYA---------REFLAKEVPEVKVLDSNA 320 (391)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHH---------HHHHHHHCTTSEECCCCB
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHH---------HHHHHhhCCCcEEeccCc
Confidence 456667776633 555666665555554 355677789988876554
No 20
>3u1w_A Hypothetical periplasmic protein; BLIP-like, structural genomics, joint center for structural JCSG, protein structure initiative; 2.00A {Parabacteroides distasonis}
Probab=22.63 E-value=57 Score=27.55 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=28.7
Q ss_pred hhcchHHHHHHHhCCCceeeecC-CCCeeEEEeecCC
Q 026687 71 QMQTPVLQFFEENLPNLTVLRDD-KNGKFEVRWKDED 106 (235)
Q Consensus 71 QL~tpvLQfFkEnLPNlsvvrNe-e~g~lElkwkd~~ 106 (235)
+|-.++.+|++.+.||..|+.=+ +.|..||+-.+..
T Consensus 138 ~lP~~i~~~i~~~yp~a~i~~ie~d~~~yEV~l~~g~ 174 (253)
T 3u1w_A 138 VIPKEVSNLMEITFANAELLDIQQNSLGYELDMIDNQ 174 (253)
T ss_dssp CCCHHHHHHHHHHSTTCEEEEEEEETTEEEEEEEETT
T ss_pred ccCHHHHHHHHHhCCCCceEEEEEcCCcEEEEEecCC
Confidence 58889999999999999998544 4477888876643
No 21
>3b1j_C CP12; alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_C*
Probab=20.82 E-value=15 Score=22.31 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=13.7
Q ss_pred CCCccccccccccccc
Q 026687 215 GSPLGVYEEDNMGAIQ 230 (235)
Q Consensus 215 GSPLGvYkEdNm~AI~ 230 (235)
.+||-.|+++|-+|..
T Consensus 4 ~t~lE~yC~enPea~E 19 (26)
T 3b1j_C 4 EPFFGDYCSENPDAAE 19 (26)
T ss_dssp CTTHHHHHHHCTTSTT
T ss_pred ccHHHHHHHHCCCcHH
Confidence 4689999999999875
No 22
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=20.22 E-value=42 Score=20.67 Aligned_cols=13 Identities=31% Similarity=0.674 Sum_probs=10.9
Q ss_pred chHHHHHHHhCCC
Q 026687 74 TPVLQFFEENLPN 86 (235)
Q Consensus 74 tpvLQfFkEnLPN 86 (235)
+|+++||-|.|..
T Consensus 1 mplvdffcetcsk 13 (26)
T 1loi_A 1 MPLVDFFCETCSK 13 (26)
T ss_dssp CCHHHHHHHTSSC
T ss_pred CchHHHHHHhcCC
Confidence 6899999999853
No 23
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=20.15 E-value=12 Score=27.43 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=19.1
Q ss_pred hhccCCCcccccee--eccCCccccCCCCCceeEEeeCCCcccc
Q 026687 180 EALRTPGVTSQRLS--VGVTPKTLRQPKRGEMLLSVHGSPLGVY 221 (235)
Q Consensus 180 d~lqTPG~~s~RlS--~GmTPKT~RlPK~GEMLLSVhGSPLGvY 221 (235)
-||..+.--+.-.- +||||+..|-=.... -+.-..||++|
T Consensus 86 ~Gf~~~s~F~r~Fk~~~G~tP~~yR~~~~~~--~~~~~~pl~~y 127 (129)
T 1bl0_A 86 YGFESQQTLTRTFKNYFDVPPHKYRMTNMQG--ESRFLHPLNHY 127 (129)
T ss_dssp TTCSCHHHHHHHHHHHHSSCHHHHHTCSSCC--STTCCCCC---
T ss_pred HCCCCHHHHHHHHHHHHCcCHHHHHHHHHhc--ccccCCccccC
Confidence 34544444444333 899999887422211 11224588887
No 24
>4dcd_A Protease 3C, genome polyprotein; antiviral inhibitors, dipeptidyl inhib hydrolase-hydrolase inhibitor complex; HET: K36; 1.69A {Human poliovirus 1} PDB: 1l1n_A
Probab=20.02 E-value=22 Score=30.05 Aligned_cols=11 Identities=55% Similarity=0.851 Sum_probs=6.7
Q ss_pred HHHhhhhchhh
Q 026687 61 RLLRSYFNEEQ 71 (235)
Q Consensus 61 RLlRSyfSkEQ 71 (235)
.|+|+||+++|
T Consensus 180 ~L~r~yF~~~q 190 (190)
T 4dcd_A 180 ALKRSYFTQSQ 190 (190)
T ss_dssp ECCGGGGC---
T ss_pred ehhHhhhhhcC
Confidence 47899999887
Done!