Query 026687
Match_columns 235
No_of_seqs 15 out of 17
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 19:39:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026687.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026687hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v8ha1 b.1.18.19 (A:2-107) Su 27.1 16 0.0012 26.1 2.4 25 85-109 72-97 (106)
2 d3duea1 d.98.2.1 (A:20-145) Pu 26.2 25 0.0018 24.8 3.3 23 68-90 8-30 (126)
3 d2dy1a4 d.58.11.1 (A:378-454) 23.4 43 0.0031 21.9 3.9 26 76-101 24-49 (77)
4 d1wi3a_ a.4.1.1 (A:) DNA-bindi 21.6 12 0.00089 24.5 0.6 22 64-86 11-34 (71)
5 d2bv3a4 d.58.11.1 (A:404-478) 19.9 34 0.0025 22.6 2.7 28 75-102 23-50 (75)
6 d1fnfa1 b.1.2.1 (A:1142-1235) 19.8 38 0.0027 21.5 2.9 22 86-107 7-28 (94)
7 d1h3ga2 b.71.1.1 (A:518-600) C 19.4 24 0.0018 24.2 1.9 19 199-217 64-82 (83)
8 d1ka1a_ e.7.1.1 (A:) 3';5'-ade 18.3 68 0.0049 25.7 4.8 54 42-96 7-74 (354)
9 d1kf6c_ f.21.2.2 (C:) Fumarate 17.9 13 0.00092 28.5 0.1 17 194-210 87-103 (130)
10 d1ng6a_ a.182.1.1 (A:) Hypothe 17.6 1.5E+02 0.011 21.6 6.3 57 27-83 47-111 (148)
No 1
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=27.09 E-value=16 Score=26.11 Aligned_cols=25 Identities=32% Similarity=0.654 Sum_probs=18.2
Q ss_pred CCceee-ecCCCCeeEEEeecCCCCc
Q 026687 85 PNLTVL-RDDKNGKFEVRWKDEDGNF 109 (235)
Q Consensus 85 PNlsvv-rNee~g~lElkwkd~~~~~ 109 (235)
|.++.- +..+.|.|++.|.|++|+.
T Consensus 72 P~~~F~~~~~~~g~l~v~~~Dn~G~~ 97 (106)
T d1v8ha1 72 PLYAFKFKAEKAGTFTIKLKDTDGDT 97 (106)
T ss_dssp CEEEEEEECCSCEEEEEEEEETTSCE
T ss_pred CeEEEEEccCCCceEEEEEEECCCCE
Confidence 444444 4566799999999999754
No 2
>d3duea1 d.98.2.1 (A:20-145) Putative periplasmic protein BVU2987 {Bacteroides vulgatus [TaxId: 821]}
Probab=26.20 E-value=25 Score=24.76 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=19.7
Q ss_pred chhhhcchHHHHHHHhCCCceee
Q 026687 68 NEEQMQTPVLQFFEENLPNLTVL 90 (235)
Q Consensus 68 SkEQL~tpvLQfFkEnLPNlsvv 90 (235)
+-.||-.+|-+||+.+.|+..|+
T Consensus 8 ~~~~LP~~vq~fi~~~fp~a~i~ 30 (126)
T d3duea1 8 QVNQLPQTAQTFIKTHFPDNKVA 30 (126)
T ss_dssp CGGGSCHHHHHHHHHHCTTCCEE
T ss_pred ChhHCcHHHHHHHHHHCCCCceE
Confidence 44678889999999999999775
No 3
>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Probab=23.35 E-value=43 Score=21.95 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.5
Q ss_pred HHHHHHHhCCCceeeecCCCCeeEEE
Q 026687 76 VLQFFEENLPNLTVLRDDKNGKFEVR 101 (235)
Q Consensus 76 vLQfFkEnLPNlsvvrNee~g~lElk 101 (235)
+|+-+.+.=|-+.|.+|+++|++-+.
T Consensus 24 aL~~L~~eDPsl~v~~d~et~e~vl~ 49 (77)
T d2dy1a4 24 ALRKLLEEDPSLKLERQEETGELLLW 49 (77)
T ss_dssp HHHHHHHHCTTSEEEECTTTCCEEEE
T ss_pred HHHHHHhhcCeEEEEEcCCchhheEe
Confidence 57778899999999999999998764
No 4
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.58 E-value=12 Score=24.48 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=14.5
Q ss_pred hhhhchhhhcchHHHHHHH-h-CCC
Q 026687 64 RSYFNEEQMQTPVLQFFEE-N-LPN 86 (235)
Q Consensus 64 RSyfSkEQL~tpvLQfFkE-n-LPN 86 (235)
|..||+||++. +-.+|++ | .|+
T Consensus 11 R~~~t~~Q~~~-Le~~F~~~~~~P~ 34 (71)
T d1wi3a_ 11 RTKISLEALGI-LQSFIHDVGLYPD 34 (71)
T ss_dssp CCCCCSHHHHH-HHHHHHHHCSCCC
T ss_pred CccCCHHHHHH-HHHHHHHhcCCCC
Confidence 56788888764 4448875 4 565
No 5
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]}
Probab=19.91 E-value=34 Score=22.62 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=17.4
Q ss_pred hHHHHHHHhCCCceeeecCCCCeeEEEe
Q 026687 75 PVLQFFEENLPNLTVLRDDKNGKFEVRW 102 (235)
Q Consensus 75 pvLQfFkEnLPNlsvvrNee~g~lElkw 102 (235)
.+|+-+.+.=|-+.+.+|+++|++-|.+
T Consensus 23 ~aL~~L~~EDPsl~~~~d~et~e~il~g 50 (75)
T d2bv3a4 23 QALARLAEESPTFSVSTHPETGSTIISG 50 (75)
T ss_dssp ---------CCSCEEEECSSSSCEEEEB
T ss_pred HHHHHHHhhCCceEEEEcCcCCcEEEee
Confidence 4677788899999999999999998865
No 6
>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.84 E-value=38 Score=21.52 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=17.4
Q ss_pred CceeeecCCCCeeEEEeecCCC
Q 026687 86 NLTVLRDDKNGKFEVRWKDEDG 107 (235)
Q Consensus 86 NlsvvrNee~g~lElkwkd~~~ 107 (235)
||.|..+.++..+.|.|..-.+
T Consensus 7 ~l~v~~~~~ts~i~v~W~~p~~ 28 (94)
T d1fnfa1 7 NLHLEANPDTGVLTVSWERSTT 28 (94)
T ss_dssp EEEEEECSSSSCEEEEEECCSC
T ss_pred CcEEEEecCCCEEEEEeeCCCC
Confidence 6777777777889999987653
No 7
>d1h3ga2 b.71.1.1 (A:518-600) Cyclomaltodextrinase {Flavobacterium sp. 92 [TaxId: 197856]}
Probab=19.37 E-value=24 Score=24.17 Aligned_cols=19 Identities=21% Similarity=0.524 Sum_probs=18.0
Q ss_pred ccccCCCCCceeEEeeCCC
Q 026687 199 KTLRQPKRGEMLLSVHGSP 217 (235)
Q Consensus 199 KT~RlPK~GEMLLSVhGSP 217 (235)
+++.||.++=|+|...|.|
T Consensus 64 ~~l~l~~ks~lIlEl~~~~ 82 (83)
T d1h3ga2 64 RELRLAPKSVVVIELPGLP 82 (83)
T ss_dssp SEEEECTTCEEEEEEECCC
T ss_pred CceEECCCceEEEEecCCC
Confidence 7899999999999999987
No 8
>d1ka1a_ e.7.1.1 (A:) 3';5'-adenosine bisphosphatase, PAP phosphatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.27 E-value=68 Score=25.66 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=35.3
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhhh----hchh----------hhcchHHHHHHHhCCCceeeecCCCC
Q 026687 42 CAAVRAIRDVELEQTLTGLRLLRSY----FNEE----------QMQTPVLQFFEENLPNLTVLRDDKNG 96 (235)
Q Consensus 42 iaAIrAIrDvEiE~~Lt~LRLlRSy----fSkE----------QL~tpvLQfFkEnLPNlsvvrNee~g 96 (235)
..||+|+|.|...-.-.+-++.++. .+|. ..+.-+.+.+++..|+..|+ .||++
T Consensus 7 ~~a~~a~~~A~~l~~~~~~~~~~~~~~~~~~K~D~spVT~AD~~~e~~I~~~L~~~fP~~~iv-GEE~~ 74 (354)
T d1ka1a_ 7 LVATQAVRKASLLTKRIQSEVISHKDSTTITKNDNSPVTTGDYAAQTIIINAIKSNFPDDKVV-GEESS 74 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTSEEECTTSCEEEHHHHHHHHHHHHHHHHHCTTCCEE-ESCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCceeECCCCCchhHHHHHHHHHHHHHHHHHCCCCEEE-eCCCC
Confidence 3689999988865444444555543 2343 23445678999999999987 55544
No 9
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=17.91 E-value=13 Score=28.47 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.5
Q ss_pred eccCCccccCCCCCcee
Q 026687 194 VGVTPKTLRQPKRGEML 210 (235)
Q Consensus 194 ~GmTPKT~RlPK~GEML 210 (235)
|+|+||+.++...||-+
T Consensus 87 F~l~Pk~m~i~v~~~~~ 103 (130)
T d1kf6c_ 87 FELAPKAANIIVKDEKM 103 (130)
T ss_dssp HHHGGGGCCCBSSSSBC
T ss_pred HHHhhHhhhhhhcCccC
Confidence 78999999999888743
No 10
>d1ng6a_ a.182.1.1 (A:) Hypothetical protein YqeY {Bacillus subtilis [TaxId: 1423]}
Probab=17.58 E-value=1.5e+02 Score=21.60 Aligned_cols=57 Identities=21% Similarity=0.401 Sum_probs=44.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhh----hhhhHHHHHHHHhhhh----chhhhcchHHHHHHHh
Q 026687 27 EDKDAELFYREVERQCAAVRAIRDV----ELEQTLTGLRLLRSYF----NEEQMQTPVLQFFEEN 83 (235)
Q Consensus 27 ee~~~~~~d~EvERqiaAIrAIrDv----EiE~~Lt~LRLlRSyf----SkEQL~tpvLQfFkEn 83 (235)
++.....+.-++..|-.||.....+ -+|....++-++.+|+ |+|+++.=|-+...|+
T Consensus 47 d~~v~~vi~k~vKqr~es~e~y~~~~r~dl~e~e~~Ei~il~~yLP~~lseeEl~~~v~~~i~e~ 111 (148)
T d1ng6a_ 47 EDEELTVLSRELKQRKDSLQEFSNANRLDLVDKVQKELDILEVYLPEQLSEEELRTIVNETIAEV 111 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHGGGSCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHh
Confidence 3445578888999999999777655 4556677888999996 7888888888888875
Done!