Query 026688
Match_columns 235
No_of_seqs 182 out of 1541
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 11:20:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 100.0 1.8E-28 3.9E-33 183.5 19.6 196 19-232 24-238 (238)
2 PF01209 Ubie_methyltran: ubiE 100.0 5.1E-29 1.1E-33 188.5 13.5 193 21-231 22-233 (233)
3 PLN02233 ubiquinone biosynthes 99.9 1.2E-25 2.5E-30 174.0 19.2 178 53-230 65-260 (261)
4 PLN02244 tocopherol O-methyltr 99.9 2.7E-24 5.9E-29 172.3 21.4 171 49-222 101-280 (340)
5 KOG1540 Ubiquinone biosynthesi 99.9 2.8E-24 6.1E-29 158.2 16.7 166 52-217 91-278 (296)
6 TIGR02752 MenG_heptapren 2-hep 99.9 2.4E-23 5.1E-28 159.2 20.0 179 50-231 34-231 (231)
7 COG2227 UbiG 2-polyprenyl-3-me 99.9 3.9E-24 8.6E-29 157.4 13.8 150 60-219 58-214 (243)
8 PTZ00098 phosphoethanolamine N 99.9 1.3E-22 2.9E-27 157.1 20.3 167 44-221 35-203 (263)
9 PLN02396 hexaprenyldihydroxybe 99.9 2.5E-23 5.4E-28 164.1 15.9 155 61-219 131-288 (322)
10 PRK11036 putative S-adenosyl-L 99.9 1.1E-22 2.3E-27 157.5 16.6 174 50-228 34-215 (255)
11 PLN02490 MPBQ/MSBQ methyltrans 99.9 2E-21 4.4E-26 153.7 19.9 159 48-222 99-258 (340)
12 PRK15068 tRNA mo(5)U34 methylt 99.9 1.6E-21 3.5E-26 154.8 19.1 164 50-222 111-276 (322)
13 PF13489 Methyltransf_23: Meth 99.9 3.9E-22 8.4E-27 144.1 14.2 147 51-217 11-160 (161)
14 PRK00216 ubiE ubiquinone/menaq 99.9 4.6E-21 9.9E-26 147.3 20.8 183 48-232 38-239 (239)
15 PRK14103 trans-aconitate 2-met 99.9 1.1E-21 2.3E-26 152.0 16.8 156 50-217 18-181 (255)
16 TIGR00452 methyltransferase, p 99.9 2.9E-21 6.3E-26 151.7 18.8 161 51-220 111-273 (314)
17 PRK15451 tRNA cmo(5)U34 methyl 99.9 1.3E-21 2.9E-26 150.5 16.5 187 41-231 34-242 (247)
18 TIGR00740 methyltransferase, p 99.9 4.5E-22 9.7E-27 152.7 12.9 171 44-218 34-225 (239)
19 PLN02336 phosphoethanolamine N 99.9 7.2E-21 1.6E-25 159.9 20.5 161 49-220 254-414 (475)
20 PRK10258 biotin biosynthesis p 99.9 7.7E-21 1.7E-25 147.0 18.9 154 48-215 29-182 (251)
21 PRK11873 arsM arsenite S-adeno 99.9 5.9E-20 1.3E-24 143.7 21.3 155 58-219 74-229 (272)
22 PRK08317 hypothetical protein; 99.9 2.4E-20 5.2E-25 143.4 18.9 170 46-221 4-177 (241)
23 PF08003 Methyltransf_9: Prote 99.9 9E-21 2E-25 144.6 16.1 186 18-220 80-267 (315)
24 TIGR01934 MenG_MenH_UbiE ubiqu 99.9 5.8E-20 1.3E-24 139.7 20.4 176 51-231 29-223 (223)
25 KOG1270 Methyltransferases [Co 99.9 8.4E-22 1.8E-26 146.1 9.5 152 62-219 90-248 (282)
26 PRK05785 hypothetical protein; 99.9 2.7E-20 5.9E-25 141.0 17.6 157 62-232 52-225 (226)
27 PF13847 Methyltransf_31: Meth 99.9 7.1E-21 1.5E-25 136.1 13.3 107 61-171 3-112 (152)
28 smart00828 PKS_MT Methyltransf 99.9 3.6E-20 7.7E-25 141.0 16.4 146 63-222 1-146 (224)
29 PF02353 CMAS: Mycolic acid cy 99.9 3E-20 6.4E-25 143.8 15.6 162 49-222 50-219 (273)
30 PF08241 Methyltransf_11: Meth 99.9 9.8E-21 2.1E-25 124.5 10.7 95 66-167 1-95 (95)
31 PRK11207 tellurite resistance 99.8 9.9E-20 2.1E-24 135.4 16.8 147 52-219 21-169 (197)
32 COG2230 Cfa Cyclopropane fatty 99.8 1.2E-19 2.7E-24 138.3 16.6 162 49-222 60-225 (283)
33 PF12847 Methyltransf_18: Meth 99.8 2.2E-20 4.7E-25 126.8 10.9 107 61-170 1-112 (112)
34 TIGR02716 C20_methyl_CrtF C-20 99.8 4.2E-19 9E-24 141.1 19.0 162 50-218 138-304 (306)
35 KOG4300 Predicted methyltransf 99.8 1.3E-19 2.8E-24 129.6 14.3 174 51-229 66-243 (252)
36 TIGR02072 BioC biotin biosynth 99.8 2.7E-19 5.9E-24 137.5 15.8 142 61-219 34-175 (240)
37 PRK00107 gidB 16S rRNA methylt 99.8 1.3E-18 2.8E-23 127.4 18.0 136 62-232 46-187 (187)
38 PRK01683 trans-aconitate 2-met 99.8 7.1E-19 1.5E-23 136.6 17.1 157 49-215 19-182 (258)
39 TIGR00477 tehB tellurite resis 99.8 7.8E-19 1.7E-23 130.3 15.8 147 51-219 20-168 (195)
40 TIGR02021 BchM-ChlM magnesium 99.8 2E-18 4.3E-23 130.8 16.2 162 47-220 39-206 (219)
41 PRK06202 hypothetical protein; 99.8 9.9E-19 2.2E-23 133.6 14.7 157 58-224 57-226 (232)
42 PRK12335 tellurite resistance 99.8 2.6E-18 5.6E-23 135.1 16.8 136 61-218 120-257 (287)
43 PRK08287 cobalt-precorrin-6Y C 99.8 1.6E-17 3.5E-22 122.8 19.1 142 43-218 12-154 (187)
44 PF07021 MetW: Methionine bios 99.8 7.3E-18 1.6E-22 121.0 15.4 149 50-220 4-167 (193)
45 TIGR03840 TMPT_Se_Te thiopurin 99.8 2.4E-17 5.1E-22 123.4 17.2 155 46-218 19-185 (213)
46 PRK05134 bifunctional 3-demeth 99.8 2E-17 4.4E-22 126.6 16.7 164 50-219 37-204 (233)
47 PF08242 Methyltransf_12: Meth 99.8 2.7E-20 5.9E-25 123.4 0.6 97 66-165 1-99 (99)
48 PLN02585 magnesium protoporphy 99.8 3.2E-17 6.9E-22 129.2 17.9 167 45-221 125-300 (315)
49 TIGR01983 UbiG ubiquinone bios 99.8 2.2E-17 4.9E-22 125.6 16.4 151 61-220 45-203 (224)
50 PF03848 TehB: Tellurite resis 99.8 2.6E-17 5.6E-22 119.8 15.5 146 52-219 21-168 (192)
51 COG4106 Tam Trans-aconitate me 99.8 1.9E-18 4.1E-23 124.6 9.3 115 49-172 18-132 (257)
52 TIGR00537 hemK_rel_arch HemK-r 99.8 7.5E-17 1.6E-21 118.4 17.0 138 51-222 9-167 (179)
53 TIGR00138 gidB 16S rRNA methyl 99.8 4.6E-17 9.9E-22 119.1 15.7 101 61-169 42-142 (181)
54 PRK07580 Mg-protoporphyrin IX 99.8 3.9E-17 8.5E-22 124.8 15.5 162 48-221 47-215 (230)
55 PRK00517 prmA ribosomal protei 99.8 1.1E-16 2.3E-21 123.5 17.7 132 61-232 119-250 (250)
56 PF13649 Methyltransf_25: Meth 99.8 3.1E-18 6.8E-23 113.8 7.9 95 65-163 1-101 (101)
57 PLN03075 nicotianamine synthas 99.8 5E-17 1.1E-21 125.6 15.0 146 61-233 123-276 (296)
58 PRK00121 trmB tRNA (guanine-N( 99.8 3.5E-17 7.6E-22 122.1 13.4 108 61-171 40-158 (202)
59 PRK04266 fibrillarin; Provisio 99.7 2.7E-16 5.9E-21 118.6 17.6 148 56-231 67-225 (226)
60 PLN02336 phosphoethanolamine N 99.7 6.3E-17 1.4E-21 136.1 15.7 149 50-216 26-178 (475)
61 COG2264 PrmA Ribosomal protein 99.7 1.7E-16 3.7E-21 122.2 16.3 155 43-232 146-300 (300)
62 PRK13255 thiopurine S-methyltr 99.7 1.6E-16 3.5E-21 119.4 15.9 155 46-218 22-188 (218)
63 TIGR02081 metW methionine bios 99.7 1.9E-16 4.1E-21 117.7 16.1 152 50-221 4-168 (194)
64 PLN02232 ubiquinone biosynthes 99.7 4.5E-17 9.8E-22 117.1 12.0 142 89-230 1-159 (160)
65 TIGR02469 CbiT precorrin-6Y C5 99.7 1.5E-16 3.2E-21 109.8 14.1 117 48-170 6-123 (124)
66 PF05401 NodS: Nodulation prot 99.7 5.8E-17 1.2E-21 116.6 12.1 136 55-215 37-175 (201)
67 PRK00377 cbiT cobalt-precorrin 99.7 9.2E-16 2E-20 114.3 19.1 118 48-170 27-146 (198)
68 PRK11705 cyclopropane fatty ac 99.7 2.1E-16 4.6E-21 128.3 15.8 156 50-222 156-314 (383)
69 PRK15001 SAM-dependent 23S rib 99.7 7.2E-16 1.6E-20 124.0 17.6 119 50-169 217-340 (378)
70 PRK14968 putative methyltransf 99.7 1.4E-15 3E-20 112.6 17.8 139 51-219 13-172 (188)
71 TIGR03587 Pse_Me-ase pseudamin 99.7 3.1E-16 6.8E-21 116.9 14.2 101 61-172 43-145 (204)
72 PRK06922 hypothetical protein; 99.7 1.2E-16 2.6E-21 134.3 13.1 107 61-171 418-539 (677)
73 COG2242 CobL Precorrin-6B meth 99.7 3.1E-15 6.7E-20 106.8 18.3 140 47-219 20-160 (187)
74 PRK13944 protein-L-isoaspartat 99.7 5E-16 1.1E-20 116.2 14.7 116 46-169 57-173 (205)
75 KOG1271 Methyltransferases [Ge 99.7 5.6E-16 1.2E-20 108.9 13.6 147 47-222 49-207 (227)
76 PRK09489 rsmC 16S ribosomal RN 99.7 1.6E-15 3.5E-20 121.2 18.2 115 50-170 185-304 (342)
77 TIGR03534 RF_mod_PrmC protein- 99.7 1.5E-15 3.4E-20 117.5 17.6 144 44-219 71-240 (251)
78 PF06325 PrmA: Ribosomal prote 99.7 4E-16 8.6E-21 121.4 13.6 145 49-232 151-295 (295)
79 smart00138 MeTrc Methyltransfe 99.7 2.2E-16 4.7E-21 122.3 12.0 109 61-169 99-242 (264)
80 KOG2361 Predicted methyltransf 99.7 5.6E-17 1.2E-21 119.1 8.1 153 62-219 72-236 (264)
81 TIGR00091 tRNA (guanine-N(7)-) 99.7 4.2E-16 9.1E-21 115.7 12.8 108 62-172 17-135 (194)
82 PF05175 MTS: Methyltransferas 99.7 4.1E-16 8.9E-21 113.3 12.1 118 50-171 20-142 (170)
83 TIGR00536 hemK_fam HemK family 99.7 3.8E-15 8.1E-20 117.0 18.3 158 44-231 96-282 (284)
84 TIGR03533 L3_gln_methyl protei 99.7 6.3E-15 1.4E-19 115.4 19.3 146 46-222 105-276 (284)
85 COG4123 Predicted O-methyltran 99.7 2.5E-15 5.5E-20 112.9 16.2 143 48-219 31-193 (248)
86 PRK14966 unknown domain/N5-glu 99.7 5E-15 1.1E-19 119.4 19.0 156 45-233 237-420 (423)
87 PRK13942 protein-L-isoaspartat 99.7 1.6E-15 3.5E-20 114.0 14.5 115 46-169 61-176 (212)
88 PF06080 DUF938: Protein of un 99.7 5.3E-15 1.1E-19 107.9 16.2 173 47-222 12-194 (204)
89 PF00891 Methyltransf_2: O-met 99.7 1.8E-15 3.9E-20 116.3 14.6 145 52-209 91-241 (241)
90 PRK14967 putative methyltransf 99.7 3.5E-15 7.6E-20 113.3 15.8 165 58-232 33-223 (223)
91 PRK09328 N5-glutamine S-adenos 99.7 1.7E-14 3.8E-19 113.1 19.6 145 44-219 91-261 (275)
92 PRK11088 rrmA 23S rRNA methylt 99.7 1.1E-15 2.4E-20 119.4 12.1 98 61-173 85-185 (272)
93 PRK11805 N5-glutamine S-adenos 99.7 1.6E-14 3.4E-19 114.2 18.6 148 46-224 117-290 (307)
94 PTZ00146 fibrillarin; Provisio 99.7 2.9E-14 6.3E-19 109.9 19.3 162 46-231 114-286 (293)
95 TIGR00406 prmA ribosomal prote 99.7 6E-15 1.3E-19 116.0 15.8 127 61-222 159-285 (288)
96 COG4976 Predicted methyltransf 99.7 3.2E-16 6.9E-21 114.2 7.7 165 48-233 112-287 (287)
97 TIGR00080 pimt protein-L-isoas 99.7 4E-15 8.7E-20 112.3 14.0 114 47-169 63-177 (215)
98 TIGR03438 probable methyltrans 99.7 4.4E-15 9.5E-20 117.4 14.8 108 61-170 63-178 (301)
99 TIGR01177 conserved hypothetic 99.7 7.3E-15 1.6E-19 117.7 16.1 140 46-220 167-315 (329)
100 PF12147 Methyltransf_20: Puta 99.7 2.9E-14 6.2E-19 108.2 17.9 168 59-231 133-311 (311)
101 PF05891 Methyltransf_PK: AdoM 99.6 4.9E-15 1.1E-19 108.5 12.6 148 61-223 55-204 (218)
102 PRK11188 rrmJ 23S rRNA methylt 99.6 1E-14 2.2E-19 109.2 14.5 99 60-172 50-168 (209)
103 PRK14121 tRNA (guanine-N(7)-)- 99.6 7.3E-15 1.6E-19 117.8 14.1 118 52-172 113-238 (390)
104 COG2813 RsmC 16S RNA G1207 met 99.6 6E-14 1.3E-18 107.7 18.3 116 50-170 147-267 (300)
105 PF05148 Methyltransf_8: Hypot 99.6 2.1E-15 4.6E-20 109.3 9.5 175 8-232 21-198 (219)
106 PF13659 Methyltransf_26: Meth 99.6 4.8E-15 1E-19 101.2 10.6 106 62-170 1-116 (117)
107 PF05724 TPMT: Thiopurine S-me 99.6 1.5E-14 3.3E-19 108.5 13.9 157 45-219 21-189 (218)
108 PRK07402 precorrin-6B methylas 99.6 2.7E-14 5.8E-19 106.3 14.7 117 48-171 27-144 (196)
109 PRK13256 thiopurine S-methyltr 99.6 3.7E-14 8E-19 106.2 14.5 114 57-172 39-166 (226)
110 COG2519 GCD14 tRNA(1-methylade 99.6 2.4E-14 5.2E-19 106.8 13.3 126 38-171 71-197 (256)
111 PHA03411 putative methyltransf 99.6 6.1E-14 1.3E-18 107.0 15.7 143 41-214 46-208 (279)
112 PRK00312 pcm protein-L-isoaspa 99.6 3.9E-14 8.5E-19 106.8 14.7 114 46-170 63-176 (212)
113 PRK01544 bifunctional N5-gluta 99.6 9.6E-14 2.1E-18 116.7 17.2 128 62-219 139-292 (506)
114 PF08704 GCD14: tRNA methyltra 99.6 9.6E-14 2.1E-18 105.4 15.4 154 34-220 13-171 (247)
115 COG2890 HemK Methylase of poly 99.6 5.4E-13 1.2E-17 104.0 19.2 157 44-233 94-278 (280)
116 COG2518 Pcm Protein-L-isoaspar 99.6 1.1E-13 2.5E-18 101.0 13.8 114 46-170 57-170 (209)
117 TIGR03704 PrmC_rel_meth putati 99.6 4.9E-13 1.1E-17 102.9 17.8 141 46-219 70-239 (251)
118 PF01135 PCMT: Protein-L-isoas 99.6 5E-14 1.1E-18 104.9 11.1 117 46-171 57-174 (209)
119 KOG3045 Predicted RNA methylas 99.5 1.2E-13 2.5E-18 102.6 11.6 174 8-233 129-305 (325)
120 KOG1541 Predicted protein carb 99.5 1.5E-13 3.2E-18 99.8 11.1 116 46-171 33-162 (270)
121 PRK13943 protein-L-isoaspartat 99.5 5.4E-13 1.2E-17 105.6 14.6 115 46-169 65-180 (322)
122 PRK14901 16S rRNA methyltransf 99.5 3.8E-13 8.1E-18 111.7 13.8 124 47-173 238-388 (434)
123 PRK04457 spermidine synthase; 99.5 3.2E-13 7E-18 104.5 12.4 110 60-171 65-179 (262)
124 TIGR00563 rsmB ribosomal RNA s 99.5 4E-13 8.7E-18 111.3 13.4 125 47-173 224-372 (426)
125 cd02440 AdoMet_MTases S-adenos 99.5 4.9E-13 1.1E-17 88.7 11.3 101 64-168 1-103 (107)
126 PF05219 DREV: DREV methyltran 99.5 8.4E-13 1.8E-17 99.1 12.9 159 46-221 74-241 (265)
127 PRK10901 16S rRNA methyltransf 99.5 1.6E-12 3.4E-17 107.7 14.9 121 49-173 232-376 (427)
128 PRK00811 spermidine synthase; 99.5 8.9E-13 1.9E-17 103.3 11.8 109 61-169 76-191 (283)
129 TIGR00438 rrmJ cell division p 99.5 7.9E-12 1.7E-16 92.5 16.1 104 54-171 25-148 (188)
130 PRK01581 speE spermidine synth 99.5 3.8E-12 8.3E-17 100.9 15.0 150 61-232 150-314 (374)
131 PRK14903 16S rRNA methyltransf 99.5 2.1E-12 4.6E-17 106.8 13.7 123 49-174 225-371 (431)
132 TIGR00417 speE spermidine synt 99.4 8.3E-12 1.8E-16 97.4 15.9 107 62-168 73-185 (270)
133 smart00650 rADc Ribosomal RNA 99.4 3.8E-12 8.2E-17 92.5 13.1 109 51-169 3-113 (169)
134 KOG3010 Methyltransferase [Gen 99.4 4.7E-13 1E-17 98.7 8.3 119 46-171 20-139 (261)
135 KOG2899 Predicted methyltransf 99.4 7E-12 1.5E-16 92.5 14.3 147 61-215 58-252 (288)
136 TIGR00446 nop2p NOL1/NOP2/sun 99.4 2E-12 4.3E-17 100.5 12.2 118 53-173 63-203 (264)
137 KOG3178 Hydroxyindole-O-methyl 99.4 2.9E-12 6.4E-17 99.9 12.9 150 62-223 178-333 (342)
138 PRK14904 16S rRNA methyltransf 99.4 2.2E-12 4.7E-17 107.5 11.5 119 51-173 240-381 (445)
139 PRK14902 16S rRNA methyltransf 99.4 4E-12 8.7E-17 106.0 13.0 119 50-172 239-382 (444)
140 PRK03612 spermidine synthase; 99.4 3.9E-12 8.4E-17 107.7 12.9 110 60-169 296-415 (521)
141 PF11968 DUF3321: Putative met 99.4 1.2E-11 2.6E-16 90.5 13.2 147 46-232 32-193 (219)
142 KOG2940 Predicted methyltransf 99.4 7E-13 1.5E-17 97.0 6.7 149 62-219 73-226 (325)
143 PLN02781 Probable caffeoyl-CoA 99.4 7.4E-12 1.6E-16 95.4 12.2 117 50-171 57-180 (234)
144 PF02390 Methyltransf_4: Putat 99.4 7.9E-12 1.7E-16 92.4 11.1 105 64-171 20-135 (195)
145 PLN02366 spermidine synthase 99.4 1.2E-11 2.6E-16 97.4 12.3 109 60-168 90-205 (308)
146 PF03291 Pox_MCEL: mRNA cappin 99.4 7.6E-12 1.6E-16 99.5 11.0 112 61-173 62-190 (331)
147 PRK10909 rsmD 16S rRNA m(2)G96 99.4 1.7E-10 3.8E-15 85.4 17.4 123 44-171 35-161 (199)
148 PRK11783 rlmL 23S rRNA m(2)G24 99.4 1.9E-11 4.2E-16 106.9 14.2 107 62-170 539-657 (702)
149 PRK15128 23S rRNA m(5)C1962 me 99.4 3.4E-11 7.5E-16 98.2 14.7 123 46-172 207-342 (396)
150 PLN02672 methionine S-methyltr 99.4 5.8E-11 1.3E-15 106.4 17.0 131 62-219 119-302 (1082)
151 PRK13168 rumA 23S rRNA m(5)U19 99.3 5.3E-11 1.1E-15 99.2 15.8 114 47-169 283-400 (443)
152 PRK03522 rumB 23S rRNA methylu 99.3 7.3E-11 1.6E-15 94.1 14.7 113 49-169 161-274 (315)
153 PHA03412 putative methyltransf 99.3 4.4E-11 9.6E-16 89.5 12.4 115 39-164 29-158 (241)
154 COG0220 Predicted S-adenosylme 99.3 5E-11 1.1E-15 89.6 12.2 107 63-172 50-167 (227)
155 COG4122 Predicted O-methyltran 99.3 4.6E-11 1E-15 88.8 11.3 119 48-172 46-169 (219)
156 PF10294 Methyltransf_16: Puta 99.3 5.7E-11 1.2E-15 86.4 11.6 128 44-172 22-159 (173)
157 PF07942 N2227: N2227-like pro 99.3 1.9E-10 4.2E-15 88.1 14.9 147 61-220 56-242 (270)
158 KOG1975 mRNA cap methyltransfe 99.3 2.1E-11 4.6E-16 93.6 8.7 110 61-172 117-240 (389)
159 PF01596 Methyltransf_3: O-met 99.3 4.4E-11 9.5E-16 88.9 9.6 108 59-171 43-157 (205)
160 TIGR00479 rumA 23S rRNA (uraci 99.3 2.7E-10 5.8E-15 94.9 15.2 113 48-168 279-395 (431)
161 COG2521 Predicted archaeal met 99.3 1E-10 2.2E-15 86.0 11.1 154 46-220 119-277 (287)
162 PF01739 CheR: CheR methyltran 99.3 7.5E-11 1.6E-15 87.0 10.4 108 61-168 31-174 (196)
163 KOG2904 Predicted methyltransf 99.3 1.4E-10 3E-15 87.3 11.6 126 44-171 128-287 (328)
164 PLN02476 O-methyltransferase 99.3 1.7E-10 3.7E-15 89.1 12.5 116 51-171 108-230 (278)
165 COG2263 Predicted RNA methylas 99.2 2.1E-09 4.6E-14 76.9 16.7 124 58-219 42-167 (198)
166 PRK11727 23S rRNA mA1618 methy 99.2 1.2E-09 2.5E-14 86.4 16.7 101 42-144 87-201 (321)
167 COG1041 Predicted DNA modifica 99.2 6.4E-10 1.4E-14 87.3 14.3 120 46-170 182-311 (347)
168 PF01170 UPF0020: Putative RNA 99.2 7.3E-10 1.6E-14 81.0 12.7 116 44-161 11-143 (179)
169 COG3963 Phospholipid N-methylt 99.2 1.1E-09 2.4E-14 76.5 12.7 126 39-172 26-159 (194)
170 KOG1331 Predicted methyltransf 99.2 8.3E-11 1.8E-15 89.2 7.7 110 48-172 34-146 (293)
171 PRK00274 ksgA 16S ribosomal RN 99.2 2.5E-10 5.3E-15 89.2 10.3 89 45-141 26-114 (272)
172 PRK14896 ksgA 16S ribosomal RN 99.2 4.1E-10 8.9E-15 87.3 11.3 89 46-143 14-102 (258)
173 PRK10611 chemotaxis methyltran 99.2 3.2E-10 6.9E-15 88.3 10.5 107 62-168 116-261 (287)
174 KOG3191 Predicted N6-DNA-methy 99.2 7.9E-09 1.7E-13 73.3 16.1 131 55-216 37-189 (209)
175 TIGR02085 meth_trns_rumB 23S r 99.2 1E-09 2.2E-14 89.5 13.6 109 53-169 225-334 (374)
176 PTZ00338 dimethyladenosine tra 99.2 4.4E-10 9.5E-15 88.3 11.0 92 46-143 21-112 (294)
177 COG0421 SpeE Spermidine syntha 99.1 9.8E-10 2.1E-14 85.3 12.0 111 57-169 73-190 (282)
178 TIGR00755 ksgA dimethyladenosi 99.1 2.1E-09 4.5E-14 83.2 13.8 88 46-142 14-104 (253)
179 PLN02589 caffeoyl-CoA O-methyl 99.1 6.1E-10 1.3E-14 85.0 10.5 118 48-170 66-191 (247)
180 KOG1499 Protein arginine N-met 99.1 6E-10 1.3E-14 87.1 9.5 104 59-166 58-164 (346)
181 PLN02823 spermine synthase 99.1 1.4E-09 3E-14 86.7 11.5 109 61-169 103-220 (336)
182 COG1352 CheR Methylase of chem 99.1 1.6E-09 3.4E-14 83.4 10.9 108 61-168 96-240 (268)
183 PRK04338 N(2),N(2)-dimethylgua 99.1 6.9E-09 1.5E-13 84.5 14.7 115 50-171 45-160 (382)
184 PF02475 Met_10: Met-10+ like- 99.1 3.8E-09 8.2E-14 78.0 11.3 109 49-166 91-199 (200)
185 COG1092 Predicted SAM-dependen 99.0 4.2E-09 9.1E-14 85.1 12.2 109 62-172 218-339 (393)
186 KOG1500 Protein arginine N-met 99.0 2.5E-09 5.5E-14 82.8 10.3 114 51-169 167-282 (517)
187 PF01564 Spermine_synth: Sperm 99.0 9.2E-09 2E-13 79.0 13.5 111 61-171 76-193 (246)
188 PF05185 PRMT5: PRMT5 arginine 99.0 5.6E-09 1.2E-13 86.5 12.8 102 62-166 187-294 (448)
189 PF04672 Methyltransf_19: S-ad 99.0 1.1E-08 2.4E-13 78.1 13.3 148 61-216 68-232 (267)
190 PRK01544 bifunctional N5-gluta 99.0 3.2E-09 6.8E-14 89.7 11.3 108 61-171 347-464 (506)
191 TIGR00095 RNA methyltransferas 99.0 1.3E-08 2.8E-13 75.1 13.0 124 44-171 31-161 (189)
192 PRK00536 speE spermidine synth 99.0 8.3E-09 1.8E-13 79.2 12.3 99 61-169 72-171 (262)
193 PF10672 Methyltrans_SAM: S-ad 99.0 5.8E-09 1.3E-13 81.1 11.0 126 42-172 106-241 (286)
194 PRK04148 hypothetical protein; 99.0 1.5E-08 3.2E-13 69.4 11.7 107 49-173 4-113 (134)
195 PF01234 NNMT_PNMT_TEMT: NNMT/ 99.0 2.4E-09 5.2E-14 81.7 8.6 158 61-231 56-256 (256)
196 KOG1661 Protein-L-isoaspartate 99.0 5.5E-09 1.2E-13 75.8 9.9 112 52-169 71-193 (237)
197 PRK05031 tRNA (uracil-5-)-meth 99.0 7.7E-09 1.7E-13 84.0 11.7 112 47-169 193-320 (362)
198 KOG2915 tRNA(1-methyladenosine 99.0 4.9E-08 1.1E-12 73.7 14.8 114 47-167 91-207 (314)
199 TIGR00478 tly hemolysin TlyA f 99.0 1.1E-08 2.4E-13 77.2 11.5 147 51-221 64-218 (228)
200 PF03141 Methyltransf_29: Puta 98.9 5.2E-10 1.1E-14 91.3 3.4 116 45-172 97-222 (506)
201 PF03602 Cons_hypoth95: Conser 98.9 5.7E-09 1.2E-13 76.4 8.6 126 44-172 23-156 (183)
202 COG2520 Predicted methyltransf 98.9 5.6E-08 1.2E-12 77.1 14.7 118 47-173 176-293 (341)
203 COG0030 KsgA Dimethyladenosine 98.9 1.5E-08 3.2E-13 77.3 10.4 90 46-142 15-105 (259)
204 PF02384 N6_Mtase: N-6 DNA Met 98.9 1.4E-08 3.1E-13 81.0 10.3 131 41-172 26-186 (311)
205 TIGR02143 trmA_only tRNA (urac 98.9 1.6E-08 3.4E-13 81.9 10.4 72 48-125 185-256 (353)
206 KOG1269 SAM-dependent methyltr 98.9 5.6E-09 1.2E-13 83.9 7.7 142 28-172 70-218 (364)
207 PRK11933 yebU rRNA (cytosine-C 98.9 3.8E-08 8.2E-13 82.0 12.7 119 52-173 102-246 (470)
208 KOG0820 Ribosomal RNA adenine 98.9 2E-08 4.3E-13 75.8 9.8 88 47-140 44-131 (315)
209 PF09243 Rsm22: Mitochondrial 98.9 4.9E-08 1.1E-12 76.3 12.3 119 49-172 21-142 (274)
210 PRK00050 16S rRNA m(4)C1402 me 98.9 1.5E-08 3.3E-13 79.2 8.9 91 47-142 5-100 (296)
211 COG2265 TrmA SAM-dependent met 98.9 7.6E-08 1.6E-12 79.4 13.4 111 46-169 278-396 (432)
212 PF04816 DUF633: Family of unk 98.8 2.9E-07 6.3E-12 68.5 13.9 122 65-219 1-123 (205)
213 KOG3201 Uncharacterized conser 98.8 7.4E-09 1.6E-13 71.9 4.7 128 44-171 12-142 (201)
214 KOG3420 Predicted RNA methylas 98.8 1.8E-08 3.9E-13 68.8 6.3 101 55-160 42-144 (185)
215 PF02527 GidB: rRNA small subu 98.8 1.2E-07 2.7E-12 69.2 10.9 98 64-169 51-148 (184)
216 TIGR03439 methyl_EasF probable 98.8 8.5E-07 1.8E-11 70.4 15.5 115 52-169 69-197 (319)
217 KOG1663 O-methyltransferase [S 98.7 2.6E-07 5.7E-12 68.3 11.3 118 47-170 59-184 (237)
218 COG4262 Predicted spermidine s 98.7 3.7E-07 7.9E-12 71.9 12.7 144 62-232 290-452 (508)
219 KOG2798 Putative trehalase [Ca 98.7 2.2E-07 4.9E-12 71.6 11.3 162 46-219 131-336 (369)
220 COG0742 N6-adenine-specific me 98.7 5.7E-07 1.2E-11 65.1 12.7 125 44-171 24-156 (187)
221 PF05958 tRNA_U5-meth_tr: tRNA 98.7 3.9E-07 8.4E-12 73.8 12.4 74 46-125 182-255 (352)
222 COG0116 Predicted N6-adenine-s 98.7 7.8E-07 1.7E-11 71.2 13.4 135 31-169 163-344 (381)
223 PRK11783 rlmL 23S rRNA m(2)G24 98.7 6.8E-07 1.5E-11 78.8 14.3 129 41-171 169-349 (702)
224 PF09445 Methyltransf_15: RNA 98.7 7.2E-08 1.6E-12 68.6 6.6 73 63-139 1-76 (163)
225 COG0144 Sun tRNA and rRNA cyto 98.7 1.2E-06 2.6E-11 71.0 14.3 125 47-174 142-293 (355)
226 TIGR02987 met_A_Alw26 type II 98.7 4.2E-07 9.1E-12 77.7 12.0 96 42-140 5-120 (524)
227 PF07091 FmrO: Ribosomal RNA m 98.6 6E-07 1.3E-11 67.7 10.2 153 45-222 91-245 (251)
228 KOG3987 Uncharacterized conser 98.6 2.3E-08 5.1E-13 72.4 2.6 111 46-170 94-208 (288)
229 PF08123 DOT1: Histone methyla 98.6 2.5E-07 5.3E-12 68.9 8.0 119 47-167 28-156 (205)
230 COG0293 FtsJ 23S rRNA methylas 98.6 1.7E-06 3.8E-11 63.6 11.8 100 60-173 44-163 (205)
231 COG0357 GidB Predicted S-adeno 98.6 2.6E-06 5.6E-11 63.5 12.7 140 62-233 68-214 (215)
232 PF01728 FtsJ: FtsJ-like methy 98.6 1.4E-07 2.9E-12 69.4 5.9 98 61-172 23-142 (181)
233 PF00398 RrnaAD: Ribosomal RNA 98.6 6.9E-07 1.5E-11 69.5 10.1 106 46-161 15-123 (262)
234 TIGR00308 TRM1 tRNA(guanine-26 98.6 1.3E-06 2.9E-11 70.9 11.9 104 62-172 45-150 (374)
235 COG0500 SmtA SAM-dependent met 98.6 2.4E-06 5.2E-11 61.5 12.2 103 65-173 52-159 (257)
236 TIGR00006 S-adenosyl-methyltra 98.5 1.1E-06 2.3E-11 69.0 10.2 93 46-142 5-102 (305)
237 COG3897 Predicted methyltransf 98.5 7E-07 1.5E-11 64.4 8.2 115 49-172 67-182 (218)
238 PF13679 Methyltransf_32: Meth 98.5 1.8E-06 3.9E-11 60.7 10.3 101 60-167 24-129 (141)
239 PF03059 NAS: Nicotianamine sy 98.5 1.3E-06 2.9E-11 67.5 10.2 108 61-170 120-231 (276)
240 PF01269 Fibrillarin: Fibrilla 98.4 7.5E-05 1.6E-09 55.5 17.1 161 46-230 55-226 (229)
241 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.4 2.7E-06 5.9E-11 66.8 9.9 120 51-173 75-223 (283)
242 COG4076 Predicted RNA methylas 98.4 9.9E-07 2.2E-11 63.1 5.8 99 62-167 33-133 (252)
243 COG2384 Predicted SAM-dependen 98.3 3.2E-05 7E-10 57.2 13.2 138 48-219 5-142 (226)
244 PF06962 rRNA_methylase: Putat 98.3 4.1E-06 8.9E-11 57.9 8.1 85 87-173 1-96 (140)
245 COG4798 Predicted methyltransf 98.3 9.6E-06 2.1E-10 58.5 9.7 153 52-219 39-204 (238)
246 COG1889 NOP1 Fibrillarin-like 98.3 0.00036 7.8E-09 51.0 17.5 159 46-231 58-229 (231)
247 KOG1709 Guanidinoacetate methy 98.3 9.1E-06 2E-10 59.6 9.4 113 50-168 91-205 (271)
248 KOG3115 Methyltransferase-like 98.3 5.5E-06 1.2E-10 60.1 7.4 109 62-172 61-186 (249)
249 KOG2352 Predicted spermine/spe 98.2 2.3E-05 4.9E-10 64.5 11.7 103 63-170 50-162 (482)
250 TIGR01444 fkbM_fam methyltrans 98.2 6.4E-06 1.4E-10 58.0 7.5 59 64-125 1-59 (143)
251 KOG4589 Cell division protein 98.2 9.2E-05 2E-09 53.3 12.9 100 60-173 68-188 (232)
252 COG1189 Predicted rRNA methyla 98.2 4.6E-05 9.9E-10 57.0 11.6 150 52-220 69-224 (245)
253 KOG2730 Methylase [General fun 98.2 3.3E-06 7.1E-11 62.0 5.4 90 46-139 78-172 (263)
254 COG4627 Uncharacterized protei 98.2 9.4E-07 2E-11 61.2 2.1 57 117-173 32-90 (185)
255 PF05971 Methyltransf_10: Prot 98.2 6.7E-05 1.5E-09 58.8 12.4 98 45-145 81-190 (299)
256 PRK11760 putative 23S rRNA C24 98.1 3.9E-05 8.5E-10 60.8 10.7 87 60-162 210-296 (357)
257 PF01795 Methyltransf_5: MraW 98.1 1.1E-05 2.4E-10 63.4 7.3 91 47-141 6-102 (310)
258 PF13578 Methyltransf_24: Meth 98.1 1.1E-06 2.4E-11 58.6 1.5 100 66-169 1-105 (106)
259 KOG2187 tRNA uracil-5-methyltr 98.1 1.5E-05 3.1E-10 65.9 7.5 75 46-125 368-442 (534)
260 KOG4058 Uncharacterized conser 98.1 2.5E-05 5.4E-10 53.8 7.4 121 43-171 54-174 (199)
261 COG0275 Predicted S-adenosylme 97.9 0.00014 3E-09 56.4 10.1 93 45-141 7-105 (314)
262 COG5459 Predicted rRNA methyla 97.9 6.3E-05 1.4E-09 59.3 7.1 112 58-173 110-229 (484)
263 PF03492 Methyltransf_7: SAM d 97.9 0.0016 3.5E-08 52.5 15.4 161 58-218 13-251 (334)
264 TIGR00027 mthyl_TIGR00027 meth 97.9 0.0022 4.7E-08 49.9 15.6 161 54-218 75-248 (260)
265 KOG1122 tRNA and rRNA cytosine 97.8 0.00047 1E-08 55.8 11.3 114 56-173 236-375 (460)
266 PRK10742 putative methyltransf 97.8 0.00031 6.6E-09 53.5 9.7 92 51-144 76-176 (250)
267 PF04989 CmcI: Cephalosporin h 97.7 0.00033 7.2E-09 51.8 9.0 107 61-172 32-150 (206)
268 PF01861 DUF43: Protein of unk 97.7 0.0046 9.9E-08 46.8 14.1 103 61-169 44-149 (243)
269 PLN02668 indole-3-acetate carb 97.6 0.0033 7.2E-08 51.3 14.0 158 62-219 64-308 (386)
270 COG0286 HsdM Type I restrictio 97.5 0.0025 5.4E-08 54.1 12.7 130 41-172 166-329 (489)
271 PF11599 AviRa: RRNA methyltra 97.5 0.0043 9.2E-08 46.0 11.5 121 48-168 38-213 (246)
272 KOG1562 Spermidine synthase [A 97.4 0.0009 1.9E-08 51.8 7.7 110 60-169 120-236 (337)
273 PF03141 Methyltransf_29: Puta 97.4 0.00083 1.8E-08 55.8 7.8 99 58-170 362-468 (506)
274 COG1064 AdhP Zn-dependent alco 97.4 0.004 8.6E-08 49.9 11.1 99 57-172 162-262 (339)
275 cd00315 Cyt_C5_DNA_methylase C 97.3 0.015 3.4E-07 45.6 13.5 70 64-143 2-73 (275)
276 PF04445 SAM_MT: Putative SAM- 97.3 0.0011 2.5E-08 50.0 6.8 91 52-144 64-163 (234)
277 PF03269 DUF268: Caenorhabditi 97.3 0.0011 2.4E-08 46.7 6.1 101 62-173 2-115 (177)
278 PRK11524 putative methyltransf 97.2 0.0018 4E-08 51.1 7.8 61 44-107 192-252 (284)
279 KOG2198 tRNA cytosine-5-methyl 97.2 0.01 2.3E-07 47.6 11.5 114 57-173 151-300 (375)
280 COG3510 CmcI Cephalosporin hyd 97.1 0.0036 7.9E-08 45.4 7.8 113 54-174 62-185 (237)
281 KOG2793 Putative N2,N2-dimethy 97.1 0.0069 1.5E-07 46.3 9.7 108 61-172 86-202 (248)
282 COG1063 Tdh Threonine dehydrog 97.1 0.028 6E-07 45.9 13.4 102 61-174 168-274 (350)
283 PRK01747 mnmC bifunctional tRN 97.1 0.0066 1.4E-07 53.8 10.5 129 60-219 56-226 (662)
284 KOG1099 SAM-dependent methyltr 97.0 0.0015 3.3E-08 48.7 5.1 98 62-173 42-167 (294)
285 PF01555 N6_N4_Mtase: DNA meth 97.0 0.0038 8.3E-08 47.3 7.4 59 42-103 173-231 (231)
286 PRK13699 putative methylase; P 97.0 0.0069 1.5E-07 46.1 8.4 63 42-107 145-207 (227)
287 PF06859 Bin3: Bicoid-interact 96.9 0.0005 1.1E-08 45.2 1.7 83 132-219 1-91 (110)
288 PF10354 DUF2431: Domain of un 96.9 0.025 5.4E-07 40.8 10.5 129 68-222 3-154 (166)
289 PF11312 DUF3115: Protein of u 96.9 0.0021 4.5E-08 50.5 5.2 112 62-173 87-246 (315)
290 KOG1596 Fibrillarin and relate 96.9 0.0086 1.9E-07 45.2 8.0 116 47-172 139-264 (317)
291 PF02005 TRM: N2,N2-dimethylgu 96.8 0.011 2.5E-07 48.4 9.1 106 62-172 50-157 (377)
292 PRK09424 pntA NAD(P) transhydr 96.8 0.025 5.5E-07 48.1 11.2 101 59-170 162-286 (509)
293 KOG0024 Sorbitol dehydrogenase 96.7 0.041 8.8E-07 43.6 11.2 104 58-174 166-278 (354)
294 COG3129 Predicted SAM-dependen 96.7 0.013 2.8E-07 44.0 7.9 125 19-144 27-165 (292)
295 PF03514 GRAS: GRAS domain fam 96.7 0.091 2E-06 43.2 13.3 124 48-173 97-247 (374)
296 COG3315 O-Methyltransferase in 96.6 0.054 1.2E-06 43.0 11.2 163 52-218 84-262 (297)
297 KOG1227 Putative methyltransfe 96.6 0.005 1.1E-07 47.9 5.2 103 62-172 195-300 (351)
298 PF02636 Methyltransf_28: Puta 96.6 0.013 2.8E-07 45.5 7.6 46 62-107 19-72 (252)
299 PRK09880 L-idonate 5-dehydroge 96.6 0.056 1.2E-06 43.8 11.7 100 59-170 167-267 (343)
300 cd08283 FDH_like_1 Glutathione 96.5 0.078 1.7E-06 43.8 12.1 108 57-170 180-307 (386)
301 KOG0822 Protein kinase inhibit 96.4 0.017 3.7E-07 48.5 7.5 101 62-167 368-476 (649)
302 KOG2539 Mitochondrial/chloropl 96.4 0.0099 2.1E-07 49.1 6.0 113 58-172 197-318 (491)
303 COG4301 Uncharacterized conser 96.4 0.11 2.5E-06 39.5 10.9 107 61-169 78-193 (321)
304 PF05430 Methyltransf_30: S-ad 96.2 0.019 4.2E-07 39.2 5.9 87 115-232 32-124 (124)
305 COG1867 TRM1 N2,N2-dimethylgua 96.2 0.15 3.3E-06 41.1 11.7 106 62-174 53-159 (380)
306 PRK10458 DNA cytosine methylas 96.2 0.5 1.1E-05 40.1 15.0 43 62-105 88-130 (467)
307 KOG1501 Arginine N-methyltrans 96.1 0.017 3.7E-07 47.4 5.8 61 63-126 68-128 (636)
308 PHA01634 hypothetical protein 96.0 0.028 6.1E-07 38.1 5.6 45 62-107 29-73 (156)
309 PF05711 TylF: Macrocin-O-meth 95.8 0.043 9.2E-07 42.2 6.9 110 59-171 72-214 (248)
310 PF00145 DNA_methylase: C-5 cy 95.8 0.39 8.4E-06 38.6 12.9 137 64-232 2-163 (335)
311 KOG2671 Putative RNA methylase 95.8 0.015 3.1E-07 46.3 4.2 116 54-172 201-357 (421)
312 KOG2352 Predicted spermine/spe 95.8 0.02 4.4E-07 47.6 5.2 109 62-173 296-420 (482)
313 COG0686 Ald Alanine dehydrogen 95.8 0.066 1.4E-06 42.2 7.7 101 61-169 167-268 (371)
314 cd08237 ribitol-5-phosphate_DH 95.5 0.16 3.5E-06 41.2 9.6 95 59-170 161-257 (341)
315 COG1565 Uncharacterized conser 95.5 0.092 2E-06 42.3 7.8 51 58-108 74-132 (370)
316 TIGR00561 pntA NAD(P) transhyd 95.3 0.11 2.5E-06 44.2 8.2 98 60-168 162-283 (511)
317 KOG2920 Predicted methyltransf 95.3 0.014 3.1E-07 45.2 2.6 120 48-168 100-233 (282)
318 TIGR00675 dcm DNA-methyltransf 95.1 0.63 1.4E-05 37.4 11.7 68 65-142 1-69 (315)
319 KOG2651 rRNA adenine N-6-methy 95.1 0.088 1.9E-06 42.6 6.5 43 60-103 152-194 (476)
320 KOG2782 Putative SAM dependent 95.0 0.019 4.1E-07 42.7 2.5 101 46-149 28-137 (303)
321 cd08254 hydroxyacyl_CoA_DH 6-h 94.9 0.81 1.8E-05 36.7 12.0 96 58-170 162-264 (338)
322 PF07757 AdoMet_MTase: Predict 94.8 0.055 1.2E-06 35.5 3.9 32 61-94 58-89 (112)
323 COG0270 Dcm Site-specific DNA 94.8 1.1 2.4E-05 36.3 12.2 123 62-214 3-141 (328)
324 TIGR02822 adh_fam_2 zinc-bindi 94.7 0.87 1.9E-05 36.8 11.7 94 57-170 161-255 (329)
325 TIGR01202 bchC 2-desacetyl-2-h 94.7 0.3 6.5E-06 39.0 8.9 88 61-170 144-232 (308)
326 PRK13699 putative methylase; P 94.7 0.15 3.2E-06 38.9 6.7 51 117-167 3-70 (227)
327 PTZ00357 methyltransferase; Pr 94.7 0.37 8E-06 42.4 9.5 102 63-164 702-830 (1072)
328 cd08230 glucose_DH Glucose deh 94.6 0.45 9.8E-06 38.8 9.8 97 60-171 171-271 (355)
329 PF00107 ADH_zinc_N: Zinc-bind 94.5 0.31 6.8E-06 33.2 7.6 85 72-172 2-92 (130)
330 TIGR03451 mycoS_dep_FDH mycoth 94.5 1 2.2E-05 36.8 11.7 100 58-170 173-277 (358)
331 KOG2078 tRNA modification enzy 94.5 0.055 1.2E-06 44.3 4.0 104 5-125 207-310 (495)
332 cd08281 liver_ADH_like1 Zinc-d 94.2 1 2.2E-05 37.0 11.1 101 57-170 187-291 (371)
333 COG1568 Predicted methyltransf 94.1 0.37 8.1E-06 37.5 7.6 103 62-170 153-261 (354)
334 TIGR00518 alaDH alanine dehydr 94.1 0.21 4.6E-06 41.1 6.8 101 61-169 166-267 (370)
335 TIGR03366 HpnZ_proposed putati 93.8 1.3 2.8E-05 34.8 10.6 100 58-170 117-219 (280)
336 PF07279 DUF1442: Protein of u 93.7 2 4.2E-05 32.3 10.4 113 50-170 30-149 (218)
337 COG0541 Ffh Signal recognition 93.5 1.5 3.3E-05 36.5 10.5 106 60-171 98-223 (451)
338 TIGR00497 hsdM type I restrict 93.5 2.3 5.1E-05 36.6 12.3 128 43-171 197-357 (501)
339 cd05213 NAD_bind_Glutamyl_tRNA 93.5 2.6 5.7E-05 33.8 11.9 131 54-210 170-302 (311)
340 KOG1253 tRNA methyltransferase 93.4 0.12 2.7E-06 43.2 4.2 108 60-173 108-220 (525)
341 cd08239 THR_DH_like L-threonin 93.0 2.4 5.3E-05 34.2 11.2 101 57-170 159-263 (339)
342 PLN02740 Alcohol dehydrogenase 93.0 2.5 5.3E-05 34.9 11.4 99 57-170 194-301 (381)
343 COG1255 Uncharacterized protei 92.9 1.5 3.2E-05 29.3 7.8 90 62-173 14-106 (129)
344 PF04072 LCM: Leucine carboxyl 92.9 0.19 4.1E-06 36.9 4.3 96 52-148 68-173 (183)
345 cd00401 AdoHcyase S-adenosyl-L 92.6 1.6 3.5E-05 36.5 9.7 103 46-170 185-290 (413)
346 TIGR02819 fdhA_non_GSH formald 92.6 3 6.4E-05 34.7 11.4 106 57-171 181-301 (393)
347 cd05188 MDR Medium chain reduc 92.5 1.5 3.1E-05 33.8 9.1 99 60-171 133-234 (271)
348 COG0863 DNA modification methy 92.4 1 2.3E-05 35.6 8.3 63 43-108 205-267 (302)
349 PLN02586 probable cinnamyl alc 92.4 2 4.4E-05 35.2 10.1 96 60-170 182-279 (360)
350 KOG1098 Putative SAM-dependent 92.4 0.54 1.2E-05 40.7 6.6 97 60-170 43-159 (780)
351 PF03686 UPF0146: Uncharacteri 92.3 1 2.3E-05 30.7 6.8 91 62-173 14-106 (127)
352 PRK11524 putative methyltransf 92.3 0.2 4.2E-06 39.7 3.9 55 114-168 7-79 (284)
353 PLN03154 putative allyl alcoho 92.2 2.2 4.8E-05 34.7 10.0 100 57-169 154-258 (348)
354 KOG1201 Hydroxysteroid 17-beta 92.1 2.3 5.1E-05 33.6 9.4 75 62-143 38-125 (300)
355 PRK10309 galactitol-1-phosphat 92.0 3.1 6.8E-05 33.7 10.7 100 58-170 157-261 (347)
356 PRK05786 fabG 3-ketoacyl-(acyl 92.0 4.2 9.2E-05 30.7 11.6 103 62-171 5-137 (238)
357 PF05050 Methyltransf_21: Meth 91.8 0.82 1.8E-05 32.5 6.5 55 67-123 1-61 (167)
358 cd08232 idonate-5-DH L-idonate 91.8 1.9 4E-05 34.8 9.2 94 61-169 165-262 (339)
359 COG0287 TyrA Prephenate dehydr 91.8 1.3 2.7E-05 35.0 7.8 90 62-166 3-95 (279)
360 PRK07502 cyclohexadienyl dehyd 91.8 2 4.4E-05 34.3 9.2 90 62-166 6-97 (307)
361 PF02153 PDH: Prephenate dehyd 91.7 0.79 1.7E-05 35.7 6.6 77 76-168 2-78 (258)
362 COG4017 Uncharacterized protei 91.5 3.3 7.2E-05 30.5 9.0 98 52-173 35-133 (254)
363 PF11899 DUF3419: Protein of u 91.4 1 2.2E-05 37.2 7.1 53 52-106 26-78 (380)
364 COG1062 AdhC Zn-dependent alco 91.3 4.8 0.0001 32.6 10.4 107 52-173 176-289 (366)
365 KOG3924 Putative protein methy 91.2 0.91 2E-05 37.2 6.5 124 48-173 179-312 (419)
366 PLN02827 Alcohol dehydrogenase 91.2 4.3 9.3E-05 33.5 10.8 98 58-170 190-296 (378)
367 PF05206 TRM13: Methyltransfer 91.1 0.73 1.6E-05 35.9 5.8 47 49-95 6-57 (259)
368 PRK09260 3-hydroxybutyryl-CoA 90.9 1.1 2.4E-05 35.4 6.9 102 63-171 2-119 (288)
369 cd08285 NADP_ADH NADP(H)-depen 90.8 6.1 0.00013 32.0 11.3 102 57-170 162-267 (351)
370 PF11899 DUF3419: Protein of u 90.7 0.52 1.1E-05 38.9 4.9 61 113-173 274-338 (380)
371 PRK08265 short chain dehydroge 90.7 5.3 0.00012 30.9 10.5 72 62-142 6-90 (261)
372 TIGR02825 B4_12hDH leukotriene 90.6 6.5 0.00014 31.5 11.2 99 56-169 133-237 (325)
373 PRK07819 3-hydroxybutyryl-CoA 90.0 1.5 3.1E-05 34.8 6.7 96 63-170 6-122 (286)
374 cd08245 CAD Cinnamyl alcohol d 89.9 8.2 0.00018 30.9 11.3 99 57-170 158-257 (330)
375 cd08294 leukotriene_B4_DH_like 89.9 8.5 0.00018 30.7 11.3 99 56-169 138-241 (329)
376 PLN02514 cinnamyl-alcohol dehy 89.7 7 0.00015 31.9 10.8 97 60-170 179-276 (357)
377 PRK07109 short chain dehydroge 89.6 9.7 0.00021 30.9 11.4 75 62-142 8-95 (334)
378 TIGR02818 adh_III_F_hyde S-(hy 89.5 10 0.00022 31.2 11.6 102 57-170 181-288 (368)
379 PLN02494 adenosylhomocysteinas 89.5 3.3 7.1E-05 35.2 8.6 104 46-170 237-342 (477)
380 COG1748 LYS9 Saccharopine dehy 89.4 1.6 3.5E-05 36.1 6.6 69 63-139 2-75 (389)
381 TIGR03201 dearomat_had 6-hydro 89.2 8.5 0.00018 31.3 10.9 101 57-170 162-273 (349)
382 PRK05708 2-dehydropantoate 2-r 89.2 8.2 0.00018 30.9 10.5 100 63-171 3-106 (305)
383 cd08255 2-desacetyl-2-hydroxye 89.1 8.8 0.00019 29.8 10.6 97 57-170 93-191 (277)
384 PF07109 Mg-por_mtran_C: Magne 89.1 4.5 9.8E-05 26.2 7.6 75 139-221 2-83 (97)
385 cd08234 threonine_DH_like L-th 89.0 10 0.00022 30.3 11.6 99 56-170 154-258 (334)
386 COG5379 BtaA S-adenosylmethion 89.0 1.1 2.4E-05 35.2 5.2 47 59-107 61-107 (414)
387 PRK08293 3-hydroxybutyryl-CoA 89.0 0.77 1.7E-05 36.3 4.6 98 63-167 4-118 (287)
388 cd05278 FDH_like Formaldehyde 88.9 8.1 0.00018 31.1 10.6 99 59-169 165-267 (347)
389 PRK12939 short chain dehydroge 88.9 5.6 0.00012 30.2 9.3 74 62-142 7-94 (250)
390 PF01206 TusA: Sulfurtransfera 88.6 3.1 6.6E-05 25.0 6.1 58 148-231 13-70 (70)
391 PRK07417 arogenate dehydrogena 88.6 4 8.7E-05 32.1 8.3 84 64-165 2-87 (279)
392 KOG2918 Carboxymethyl transfer 88.5 11 0.00024 30.1 12.6 153 61-219 87-276 (335)
393 PRK08324 short chain dehydroge 88.4 8.5 0.00018 34.6 11.1 103 61-170 421-558 (681)
394 cd08295 double_bond_reductase_ 88.3 5.7 0.00012 32.0 9.3 100 57-169 147-251 (338)
395 cd08242 MDR_like Medium chain 88.3 11 0.00025 29.9 11.0 93 57-168 151-244 (319)
396 PRK06181 short chain dehydroge 88.2 8.1 0.00017 29.8 9.8 73 63-142 2-88 (263)
397 cd08301 alcohol_DH_plants Plan 88.1 12 0.00026 30.7 11.2 103 57-171 183-291 (369)
398 cd08277 liver_alcohol_DH_like 88.1 11 0.00023 30.9 10.9 102 57-170 180-287 (365)
399 PRK07576 short chain dehydroge 88.0 9.9 0.00021 29.5 10.2 73 62-140 9-94 (264)
400 PRK11064 wecC UDP-N-acetyl-D-m 88.0 5.1 0.00011 33.7 8.9 37 63-101 4-42 (415)
401 cd08278 benzyl_alcohol_DH Benz 88.0 13 0.00029 30.4 11.7 98 58-170 183-286 (365)
402 PF10237 N6-adenineMlase: Prob 87.9 8.1 0.00018 27.8 8.9 95 61-170 25-124 (162)
403 COG0677 WecC UDP-N-acetyl-D-ma 87.9 9.8 0.00021 31.6 10.0 99 62-172 9-131 (436)
404 PRK08267 short chain dehydroge 87.9 9.5 0.00021 29.3 10.0 72 63-142 2-87 (260)
405 PRK00045 hemA glutamyl-tRNA re 87.8 16 0.00034 30.9 12.3 41 59-99 179-220 (423)
406 cd08238 sorbose_phosphate_red 87.8 14 0.00031 30.8 11.5 104 59-168 173-287 (410)
407 PRK05562 precorrin-2 dehydroge 87.7 6.2 0.00014 30.0 8.4 66 62-139 25-92 (223)
408 KOG0023 Alcohol dehydrogenase, 87.7 3.6 7.7E-05 33.0 7.2 105 58-173 178-283 (360)
409 PLN02178 cinnamyl-alcohol dehy 87.6 4.7 0.0001 33.3 8.5 95 60-170 177-274 (375)
410 PF14740 DUF4471: Domain of un 87.6 1.5 3.2E-05 34.7 5.2 67 130-217 220-286 (289)
411 TIGR00936 ahcY adenosylhomocys 87.5 11 0.00023 31.6 10.4 103 46-170 178-283 (406)
412 cd08300 alcohol_DH_class_III c 87.5 14 0.00031 30.2 11.7 101 57-170 182-289 (368)
413 cd05285 sorbitol_DH Sorbitol d 87.3 14 0.0003 29.8 11.6 100 56-170 157-266 (343)
414 PF02086 MethyltransfD12: D12 86.9 1.7 3.6E-05 33.7 5.2 57 47-105 6-62 (260)
415 PRK06522 2-dehydropantoate 2-r 86.8 11 0.00024 29.8 10.0 96 64-169 2-100 (304)
416 PF02558 ApbA: Ketopantoate re 86.7 2.9 6.2E-05 29.3 6.0 89 65-169 1-101 (151)
417 PF02826 2-Hacid_dh_C: D-isome 86.6 3.9 8.4E-05 29.8 6.7 89 61-166 35-124 (178)
418 KOG0821 Predicted ribosomal RN 86.5 2.9 6.4E-05 31.5 5.9 74 47-125 36-109 (326)
419 PLN00203 glutamyl-tRNA reducta 86.4 15 0.00032 31.9 10.9 99 49-156 251-353 (519)
420 cd08231 MDR_TM0436_like Hypoth 86.4 16 0.00036 29.7 12.4 94 61-169 177-280 (361)
421 KOG2912 Predicted DNA methylas 86.3 2.7 5.8E-05 33.6 5.8 98 43-142 79-188 (419)
422 cd08293 PTGR2 Prostaglandin re 86.2 6.7 0.00015 31.6 8.6 93 63-169 156-254 (345)
423 COG4121 Uncharacterized conser 86.2 7.8 0.00017 30.0 8.3 140 61-231 58-241 (252)
424 cd08261 Zn_ADH7 Alcohol dehydr 85.9 17 0.00036 29.3 10.9 100 57-169 155-258 (337)
425 PRK06701 short chain dehydroge 85.4 16 0.00035 28.8 11.1 103 62-170 46-182 (290)
426 PF02254 TrkA_N: TrkA-N domain 85.4 8.4 0.00018 25.5 10.9 86 70-170 4-97 (116)
427 PF06690 DUF1188: Protein of u 85.3 15 0.00032 28.2 10.8 101 49-173 29-130 (252)
428 PRK05854 short chain dehydroge 85.3 10 0.00022 30.4 9.1 77 62-142 14-103 (313)
429 PRK07066 3-hydroxybutyryl-CoA 85.1 4 8.6E-05 33.0 6.6 93 62-165 7-115 (321)
430 COG0604 Qor NADPH:quinone redu 85.0 7.7 0.00017 31.4 8.3 104 54-171 135-243 (326)
431 PRK15057 UDP-glucose 6-dehydro 84.9 17 0.00037 30.2 10.4 39 64-104 2-41 (388)
432 cd03420 SirA_RHOD_Pry_redox Si 84.7 6.5 0.00014 23.6 8.1 58 148-231 12-69 (69)
433 PRK07530 3-hydroxybutyryl-CoA 84.7 15 0.00032 29.1 9.7 94 63-168 5-118 (292)
434 PF12692 Methyltransf_17: S-ad 84.6 4.2 9.2E-05 28.6 5.6 111 49-170 17-135 (160)
435 PF08468 MTS_N: Methyltransfer 84.4 5.8 0.00013 28.3 6.5 93 62-173 13-109 (155)
436 cd08265 Zn_ADH3 Alcohol dehydr 84.3 20 0.00043 29.6 10.7 99 58-169 200-307 (384)
437 PRK06249 2-dehydropantoate 2-r 84.1 10 0.00022 30.4 8.6 100 62-169 5-106 (313)
438 KOG1269 SAM-dependent methyltr 84.1 9.6 0.00021 31.4 8.4 111 62-176 181-320 (364)
439 PF01262 AlaDh_PNT_C: Alanine 84.1 0.7 1.5E-05 33.4 1.8 99 60-166 18-136 (168)
440 PRK08644 thiamine biosynthesis 84.1 13 0.00028 28.0 8.6 32 62-94 28-61 (212)
441 PF11253 DUF3052: Protein of u 84.0 11 0.00024 25.7 8.4 72 130-223 43-114 (127)
442 cd08296 CAD_like Cinnamyl alco 84.0 10 0.00022 30.5 8.7 101 57-170 159-260 (333)
443 PRK06128 oxidoreductase; Provi 83.9 20 0.00043 28.4 10.7 103 62-170 55-192 (300)
444 cd08263 Zn_ADH10 Alcohol dehyd 83.5 23 0.0005 28.9 11.8 94 60-169 186-287 (367)
445 PF08484 Methyltransf_14: C-me 83.5 12 0.00026 26.8 7.9 90 62-168 68-158 (160)
446 PF03446 NAD_binding_2: NAD bi 83.4 14 0.0003 26.4 8.4 110 64-219 3-119 (163)
447 PF01488 Shikimate_DH: Shikima 83.3 5.9 0.00013 27.4 6.1 77 60-145 10-88 (135)
448 TIGR02354 thiF_fam2 thiamine b 83.0 7.4 0.00016 29.0 6.9 32 62-94 21-54 (200)
449 PRK08306 dipicolinate synthase 82.9 16 0.00036 29.1 9.2 90 61-169 151-241 (296)
450 cd08298 CAD2 Cinnamyl alcohol 82.5 23 0.0005 28.2 11.8 94 56-169 162-256 (329)
451 cd05283 CAD1 Cinnamyl alcohol 82.2 24 0.00053 28.3 10.5 97 58-170 166-264 (337)
452 PRK12921 2-dehydropantoate 2-r 82.2 14 0.00031 29.3 8.8 96 64-168 2-101 (305)
453 TIGR02356 adenyl_thiF thiazole 82.0 5.3 0.00012 29.8 5.9 32 62-94 21-54 (202)
454 PRK11730 fadB multifunctional 81.8 8.8 0.00019 34.8 8.1 101 63-171 314-430 (715)
455 PRK08339 short chain dehydroge 81.8 13 0.00028 28.8 8.3 76 62-142 8-95 (263)
456 TIGR01035 hemA glutamyl-tRNA r 81.8 30 0.00066 29.1 11.6 46 54-99 172-218 (417)
457 PRK08177 short chain dehydroge 81.8 20 0.00042 26.9 9.5 68 63-141 2-80 (225)
458 PLN02545 3-hydroxybutyryl-CoA 81.7 9.1 0.0002 30.4 7.4 92 63-166 5-116 (295)
459 cd08233 butanediol_DH_like (2R 81.6 27 0.00058 28.3 11.7 103 57-171 168-274 (351)
460 cd03423 SirA SirA (also known 81.6 9.1 0.0002 22.9 8.3 58 148-231 12-69 (69)
461 PRK10669 putative cation:proto 81.5 16 0.00035 32.0 9.4 91 62-169 417-515 (558)
462 cd00291 SirA_YedF_YeeD SirA, Y 81.3 9 0.00019 22.7 8.3 54 151-230 15-68 (69)
463 PRK08507 prephenate dehydrogen 81.2 12 0.00027 29.3 7.9 85 64-166 2-88 (275)
464 PRK03562 glutathione-regulated 81.0 19 0.00041 32.1 9.7 92 62-170 400-499 (621)
465 PRK07890 short chain dehydroge 81.0 14 0.00031 28.2 8.2 75 62-142 5-92 (258)
466 COG0569 TrkA K+ transport syst 80.8 11 0.00023 28.8 7.2 66 63-138 1-72 (225)
467 PF01408 GFO_IDH_MocA: Oxidore 80.6 14 0.0003 24.5 9.2 92 64-172 2-96 (120)
468 PLN02819 lysine-ketoglutarate 80.5 17 0.00037 34.4 9.5 71 62-140 569-656 (1042)
469 PRK07102 short chain dehydroge 80.5 13 0.00027 28.3 7.7 73 63-140 2-84 (243)
470 cd08236 sugar_DH NAD(P)-depend 80.3 29 0.00062 27.9 11.9 97 56-169 154-258 (343)
471 PRK05476 S-adenosyl-L-homocyst 80.3 17 0.00037 30.7 8.7 101 48-170 197-300 (425)
472 PRK03659 glutathione-regulated 80.3 15 0.00032 32.6 8.8 94 62-172 400-501 (601)
473 PRK05867 short chain dehydroge 80.3 14 0.0003 28.3 7.9 75 62-142 9-96 (253)
474 PF02737 3HCDH_N: 3-hydroxyacy 80.3 6.1 0.00013 28.9 5.5 97 64-172 1-117 (180)
475 PRK06130 3-hydroxybutyryl-CoA 80.2 13 0.00027 29.8 7.8 41 62-104 4-46 (311)
476 PRK06172 short chain dehydroge 80.2 16 0.00034 28.0 8.1 75 62-142 7-94 (253)
477 PF12242 Eno-Rase_NADH_b: NAD( 79.9 11 0.00024 23.3 5.5 44 51-94 28-73 (78)
478 PRK00299 sulfur transfer prote 79.7 12 0.00026 23.3 9.4 60 146-231 20-79 (81)
479 PRK07677 short chain dehydroge 79.5 16 0.00034 28.0 8.0 73 63-141 2-87 (252)
480 PLN02353 probable UDP-glucose 79.5 11 0.00024 32.3 7.5 41 63-103 2-44 (473)
481 PTZ00075 Adenosylhomocysteinas 79.4 7.9 0.00017 33.0 6.5 87 61-169 253-341 (476)
482 PRK12548 shikimate 5-dehydroge 79.3 30 0.00064 27.5 10.8 80 61-146 125-213 (289)
483 cd05279 Zn_ADH1 Liver alcohol 79.3 33 0.00072 28.0 11.2 102 57-170 179-286 (365)
484 COG1893 ApbA Ketopantoate redu 79.3 20 0.00044 28.8 8.6 94 63-172 1-104 (307)
485 PRK07063 short chain dehydroge 79.2 18 0.00038 27.8 8.2 77 62-142 7-96 (260)
486 cd03422 YedF YedF is a bacteri 79.1 11 0.00025 22.5 8.3 58 148-231 12-69 (69)
487 PRK07806 short chain dehydroge 79.1 26 0.00056 26.6 12.2 102 62-169 6-134 (248)
488 PRK06124 gluconate 5-dehydroge 78.9 18 0.0004 27.6 8.2 75 62-142 11-98 (256)
489 PRK10083 putative oxidoreducta 78.7 25 0.00054 28.2 9.3 102 57-170 156-260 (339)
490 PF06460 NSP13: Coronavirus NS 78.7 21 0.00047 27.8 8.0 95 60-170 60-170 (299)
491 COG2933 Predicted SAM-dependen 78.7 17 0.00036 28.5 7.4 86 59-160 209-294 (358)
492 PLN02256 arogenate dehydrogena 78.6 22 0.00047 28.6 8.5 42 52-95 26-69 (304)
493 PRK07454 short chain dehydroge 78.5 23 0.00049 26.8 8.6 74 62-142 6-93 (241)
494 cd05281 TDH Threonine dehydrog 78.4 34 0.00073 27.6 10.3 98 60-170 162-263 (341)
495 cd01487 E1_ThiF_like E1_ThiF_l 78.3 20 0.00043 26.1 7.7 31 64-95 1-33 (174)
496 PF02719 Polysacc_synt_2: Poly 78.2 7.5 0.00016 30.9 5.7 75 69-146 4-91 (293)
497 PLN03209 translocon at the inn 78.1 48 0.001 29.3 10.9 80 60-142 78-169 (576)
498 PRK00094 gpsA NAD(P)H-dependen 78.1 13 0.00027 29.9 7.3 96 64-168 3-104 (325)
499 PRK06500 short chain dehydroge 78.1 27 0.0006 26.4 11.1 72 62-142 6-90 (249)
500 COG0300 DltE Short-chain dehyd 78.1 31 0.00068 27.1 9.3 81 61-146 5-98 (265)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.97 E-value=1.8e-28 Score=183.49 Aligned_cols=196 Identities=24% Similarity=0.331 Sum_probs=152.4
Q ss_pred hhhcccccccccccceecccccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHH
Q 026688 19 EFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENML 98 (235)
Q Consensus 19 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~ 98 (235)
.+..|+.++...++.|++. +.+.+...++.+|||+|||||..+..+++..+.++|+++|+|+.|+
T Consensus 24 YD~~n~~~S~g~~~~Wr~~---------------~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML 88 (238)
T COG2226 24 YDLMNDLMSFGLHRLWRRA---------------LISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESML 88 (238)
T ss_pred HHhhcccccCcchHHHHHH---------------HHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHH
Confidence 3456677777777778743 3344444478999999999999999999997788999999999999
Q ss_pred HHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCccc
Q 026688 99 KQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL 178 (235)
Q Consensus 99 ~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~ 178 (235)
+.++++....+. .+++++.+|++++|+++++||+|.+.++|+++++++++|++++|+|||||.+++.+.........
T Consensus 89 ~~a~~k~~~~~~---~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~ 165 (238)
T COG2226 89 EVAREKLKKKGV---QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVL 165 (238)
T ss_pred HHHHHHhhccCc---cceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhh
Confidence 999999987552 34999999999999999999999999999999999999999999999999999999887542222
Q ss_pred chhHHHHHHh--H---hh------------cCCceeecCHHHHHHHHHHcCCceeEEE--eeCcEEEEEEecC
Q 026688 179 IPFSRLLRQN--M---MQ------------ISGSYTFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTATKP 232 (235)
Q Consensus 179 ~~~~~~~~~~--~---~~------------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~--~~~~~~~~~~~k~ 232 (235)
......+... + .. ..+...+.+.+++..+++++||+.+... ..+...++++.|+
T Consensus 166 ~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K~ 238 (238)
T COG2226 166 RKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYKP 238 (238)
T ss_pred HHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEecC
Confidence 2222211111 0 00 1112456788999999999999977643 5566777777774
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.96 E-value=5.1e-29 Score=188.50 Aligned_cols=193 Identities=24% Similarity=0.370 Sum_probs=93.6
Q ss_pred hcccccccccccceecccccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHH
Q 026688 21 FRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLK 99 (235)
Q Consensus 21 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~ 99 (235)
..|..++.+.+..|++. +.+.+...++.+|||+|||+|..+..++++ ++..+|+++|+|+.|++
T Consensus 22 ~~n~~ls~g~~~~wr~~---------------~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~ 86 (233)
T PF01209_consen 22 RMNDLLSFGQDRRWRRK---------------LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLE 86 (233)
T ss_dssp ---------------SH---------------HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHH
T ss_pred CCccccCCcHHHHHHHH---------------HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHH
Confidence 45667788888888743 334455566889999999999999999886 55679999999999999
Q ss_pred HHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccc
Q 026688 100 QCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 179 (235)
Q Consensus 100 ~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~ 179 (235)
.|++++...+ ..+++++++|++++|+++++||+|++.+.+++++|+.+.+++++|+|||||.+++.+++........
T Consensus 87 ~a~~k~~~~~---~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~ 163 (233)
T PF01209_consen 87 VARKKLKREG---LQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLR 163 (233)
T ss_dssp HHHHHHHHTT-----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHH
T ss_pred HHHHHHHhhC---CCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhh
Confidence 9999998765 3489999999999999999999999999999999999999999999999999999998875421111
Q ss_pred hhHHHHHHh--------Hhh--------cCCceeecCHHHHHHHHHHcCCceeEEE--eeCcEEEEEEec
Q 026688 180 PFSRLLRQN--------MMQ--------ISGSYTFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTATK 231 (235)
Q Consensus 180 ~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~--~~~~~~~~~~~k 231 (235)
.+...+... +.. ..+...+.+.+++.++++++||+.++.. ..|...++++.|
T Consensus 164 ~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 164 ALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp HHHHH-----------------------------------------------------------------
T ss_pred ceeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 111111110 000 1122456788999999999999977664 566677777765
No 3
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.94 E-value=1.2e-25 Score=173.96 Aligned_cols=178 Identities=20% Similarity=0.254 Sum_probs=131.3
Q ss_pred HHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCC
Q 026688 53 MKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 131 (235)
Q Consensus 53 i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 131 (235)
+.+.+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.|++.|+++..........++++.++|+.++|++++
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~ 144 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDC 144 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCC
Confidence 344555566889999999999999988876 4567999999999999999877542110013478999999999999888
Q ss_pred ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHH--------hHhh-------cCCce
Q 026688 132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ--------NMMQ-------ISGSY 196 (235)
Q Consensus 132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~--------~~~~-------~~~~~ 196 (235)
+||+|++..+++|++++..+++++.++|||||.+++.++..+......+....+.. .+.. .....
T Consensus 145 sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~ 224 (261)
T PLN02233 145 YFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSIN 224 (261)
T ss_pred CEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876432111111110000 0000 00113
Q ss_pred eecCHHHHHHHHHHcCCceeEEEee--CcEEEEEEe
Q 026688 197 TFLSEREIEDLCRACGLVDFKCTRN--RGFVMFTAT 230 (235)
Q Consensus 197 ~~~~~~~~~~~l~~~Gf~~~~~~~~--~~~~~~~~~ 230 (235)
.+++.+++.++++++||+.++.... +...+++++
T Consensus 225 ~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 225 EYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred hcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 4789999999999999998776543 345556655
No 4
>PLN02244 tocopherol O-methyltransferase
Probab=99.93 E-value=2.7e-24 Score=172.32 Aligned_cols=171 Identities=20% Similarity=0.180 Sum_probs=130.5
Q ss_pred HHHHHHhhcCC-----CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688 49 EFELMKGYLKP-----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 123 (235)
Q Consensus 49 ~~~~i~~~~~~-----~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 123 (235)
..+.+++.+.. .++.+|||||||+|.++..+++.. .++|+|+|+|+.+++.++++....+. ..++++.++|+
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~--~~~v~~~~~D~ 177 (340)
T PLN02244 101 MIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGL--SDKVSFQVADA 177 (340)
T ss_pred HHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEcCc
Confidence 44555665554 567899999999999999999875 46999999999999999998876654 35799999999
Q ss_pred ccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCc----ccchhHHHHHHhHhhcCCceeec
Q 026688 124 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF----NLIPFSRLLRQNMMQISGSYTFL 199 (235)
Q Consensus 124 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 199 (235)
.+.++++++||+|++..+++|+++..++++++.++|+|||.+++.++...... ...+....+...+........+.
T Consensus 178 ~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~ 257 (340)
T PLN02244 178 LNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWC 257 (340)
T ss_pred ccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCC
Confidence 99888889999999999999999999999999999999999999886542211 11112111111111111112346
Q ss_pred CHHHHHHHHHHcCCceeEEEeeC
Q 026688 200 SEREIEDLCRACGLVDFKCTRNR 222 (235)
Q Consensus 200 ~~~~~~~~l~~~Gf~~~~~~~~~ 222 (235)
+.+++.++++++||.++.+....
T Consensus 258 s~~~~~~~l~~aGf~~v~~~d~s 280 (340)
T PLN02244 258 STSDYVKLAESLGLQDIKTEDWS 280 (340)
T ss_pred CHHHHHHHHHHCCCCeeEeeeCc
Confidence 89999999999999998877543
No 5
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.93 E-value=2.8e-24 Score=158.19 Aligned_cols=166 Identities=20% Similarity=0.229 Sum_probs=133.7
Q ss_pred HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCC------ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF------SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
.....+.+..+.++||++||||..+..+.+.-.. .+|+++|++|+|+..++++....++....++.++++|+++
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 4456677777899999999999999999887543 7899999999999999999977776556679999999999
Q ss_pred CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHH--------hHhh------
Q 026688 126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ--------NMMQ------ 191 (235)
Q Consensus 126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~--------~~~~------ 191 (235)
+|+++++||+..+.+.+..++++++.+++++|+|||||++.+.+++.........+.+.... .+..
T Consensus 171 LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYq 250 (296)
T KOG1540|consen 171 LPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQ 250 (296)
T ss_pred CCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhh
Confidence 99999999999999999999999999999999999999999999886542222222211110 0000
Q ss_pred --cCCceeecCHHHHHHHHHHcCCceeE
Q 026688 192 --ISGSYTFLSEREIEDLCRACGLVDFK 217 (235)
Q Consensus 192 --~~~~~~~~~~~~~~~~l~~~Gf~~~~ 217 (235)
..+..++.+.+++..+.+++||..+.
T Consensus 251 YLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 251 YLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 11225677889999999999999876
No 6
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.92 E-value=2.4e-23 Score=159.18 Aligned_cols=179 Identities=23% Similarity=0.278 Sum_probs=135.8
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688 50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 128 (235)
Q Consensus 50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 128 (235)
.+.+++.+...++.+|||+|||+|..+..+++. ++..+|+|+|+++.+++.+++++...+ ..++++.++|+.+.++
T Consensus 34 ~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~ 110 (231)
T TIGR02752 34 RKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG---LHNVELVHGNAMELPF 110 (231)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEEechhcCCC
Confidence 355666777777899999999999999999887 456799999999999999999886544 3478999999988877
Q ss_pred CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccc-----------hhHHHHHH----h-Hhhc
Q 026688 129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI-----------PFSRLLRQ----N-MMQI 192 (235)
Q Consensus 129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~-----------~~~~~~~~----~-~~~~ 192 (235)
+.++||+|++..++++++++.++++++.++|+|||.+++.+.......... |....+.. . ....
T Consensus 111 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (231)
T TIGR02752 111 DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ 190 (231)
T ss_pred CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHH
Confidence 778999999999999999999999999999999999998876543211100 11000000 0 0001
Q ss_pred CCceeecCHHHHHHHHHHcCCceeEEEe--eCcEEEEEEec
Q 026688 193 SGSYTFLSEREIEDLCRACGLVDFKCTR--NRGFVMFTATK 231 (235)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~--~~~~~~~~~~k 231 (235)
.....+++.+++.++++++||+++++.. .+....++++|
T Consensus 191 ~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 191 ESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 1224567899999999999999877653 45677788776
No 7
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.92 E-value=3.9e-24 Score=157.40 Aligned_cols=150 Identities=17% Similarity=0.251 Sum_probs=120.2
Q ss_pred CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688 60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 139 (235)
Q Consensus 60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~ 139 (235)
.++.+|||+|||-|.++..+++.+. .|+|+|+++.+++.|+.+..+.+. .+++.+...+++....++||+|+|.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~gv----~i~y~~~~~edl~~~~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALESGV----NIDYRQATVEDLASAGGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhccc----cccchhhhHHHHHhcCCCccEEEEh
Confidence 4589999999999999999999985 999999999999999999877643 5778888887765445899999999
Q ss_pred ccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHH-----HHhHhh--cCCceeecCHHHHHHHHHHcC
Q 026688 140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL-----RQNMMQ--ISGSYTFLSEREIEDLCRACG 212 (235)
Q Consensus 140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~l~~~G 212 (235)
.+++|+++|+.+++.|.+++||||.+++++++... .++...+ .-.+.. ......++-++++..++...|
T Consensus 132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~----ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~ 207 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRTL----KAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGAN 207 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCH----HHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCC
Confidence 99999999999999999999999999999998632 2221111 111111 112255788999999999989
Q ss_pred CceeEEE
Q 026688 213 LVDFKCT 219 (235)
Q Consensus 213 f~~~~~~ 219 (235)
+.+....
T Consensus 208 ~~~~~~~ 214 (243)
T COG2227 208 LKIIDRK 214 (243)
T ss_pred ceEEeec
Confidence 8876654
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.91 E-value=1.3e-22 Score=157.11 Aligned_cols=167 Identities=17% Similarity=0.216 Sum_probs=131.1
Q ss_pred CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688 44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 123 (235)
Q Consensus 44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 123 (235)
|+..+..+.++..+...++.+|||+|||+|..+..+++.. .++|+++|+++.+++.++++... ..++.+.+.|+
T Consensus 35 ~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~ 108 (263)
T PTZ00098 35 SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDI 108 (263)
T ss_pred CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCc
Confidence 4445667788888888888999999999999999887754 46999999999999999987653 34789999999
Q ss_pred ccCCCCCCceeEEEecccccccC--ChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCH
Q 026688 124 SRLPFASSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE 201 (235)
Q Consensus 124 ~~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (235)
.+.+++.++||+|++..+++|++ ++..+++++.++|+|||.+++.++...... .+...+...... ....+.++
T Consensus 109 ~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~---~~~~~~~~~~~~--~~~~~~~~ 183 (263)
T PTZ00098 109 LKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIE---NWDEEFKAYIKK--RKYTLIPI 183 (263)
T ss_pred ccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccccc---CcHHHHHHHHHh--cCCCCCCH
Confidence 88888888999999999988886 678999999999999999999987654311 122222221111 12345789
Q ss_pred HHHHHHHHHcCCceeEEEee
Q 026688 202 REIEDLCRACGLVDFKCTRN 221 (235)
Q Consensus 202 ~~~~~~l~~~Gf~~~~~~~~ 221 (235)
.++.++|+++||+++.....
T Consensus 184 ~~~~~~l~~aGF~~v~~~d~ 203 (263)
T PTZ00098 184 QEYGDLIKSCNFQNVVAKDI 203 (263)
T ss_pred HHHHHHHHHCCCCeeeEEeC
Confidence 99999999999998887643
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.91 E-value=2.5e-23 Score=164.06 Aligned_cols=155 Identities=17% Similarity=0.160 Sum_probs=119.5
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 140 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~ 140 (235)
++.+|||||||+|.++..+++.+. +|+|+|+++.+++.|+++....+. ..++.+.+.|++++++..++||+|++..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~~~--~~~i~~~~~dae~l~~~~~~FD~Vi~~~ 206 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMDPV--TSTIEYLCTTAEKLADEGRKFDAVLSLE 206 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCc--ccceeEEecCHHHhhhccCCCCEEEEhh
Confidence 457999999999999999988654 999999999999999987654332 3478999999988877678999999999
Q ss_pred cccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchh-HHHHHHhHhhcCC--ceeecCHHHHHHHHHHcCCceeE
Q 026688 141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF-SRLLRQNMMQISG--SYTFLSEREIEDLCRACGLVDFK 217 (235)
Q Consensus 141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~Gf~~~~ 217 (235)
+++|+.++..+++++.++|+|||.+++.+.+.......... .......+..... ...+++++++.++++++||+++.
T Consensus 207 vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~ 286 (322)
T PLN02396 207 VIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKE 286 (322)
T ss_pred HHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999999999998875311000000 0011111111111 23578999999999999999877
Q ss_pred EE
Q 026688 218 CT 219 (235)
Q Consensus 218 ~~ 219 (235)
+.
T Consensus 287 ~~ 288 (322)
T PLN02396 287 MA 288 (322)
T ss_pred Ee
Confidence 74
No 10
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.90 E-value=1.1e-22 Score=157.49 Aligned_cols=174 Identities=17% Similarity=0.210 Sum_probs=128.3
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-C
Q 026688 50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F 128 (235)
Q Consensus 50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 128 (235)
++.+++.+. .++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.|+++....+. ..+++++++|+.+++ .
T Consensus 34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g~--~~~v~~~~~d~~~l~~~ 108 (255)
T PRK11036 34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKGV--SDNMQFIHCAAQDIAQH 108 (255)
T ss_pred HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--ccceEEEEcCHHHHhhh
Confidence 345555555 3468999999999999999999865 999999999999999998877654 357899999997753 4
Q ss_pred CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhH---HHHHHhHh----hcCCceeecCH
Q 026688 129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS---RLLRQNMM----QISGSYTFLSE 201 (235)
Q Consensus 129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~ 201 (235)
..++||+|++..+++|+.++..+++++.++|+|||.+++..++.+......... ......+. ........+++
T Consensus 109 ~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 188 (255)
T PRK11036 109 LETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDP 188 (255)
T ss_pred cCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCH
Confidence 567899999999999999999999999999999999999877753210000000 00000000 00111335789
Q ss_pred HHHHHHHHHcCCceeEEEeeCcEEEEE
Q 026688 202 REIEDLCRACGLVDFKCTRNRGFVMFT 228 (235)
Q Consensus 202 ~~~~~~l~~~Gf~~~~~~~~~~~~~~~ 228 (235)
+++.++++++||+++.......+.-++
T Consensus 189 ~~l~~~l~~aGf~~~~~~gi~~~~~~~ 215 (255)
T PRK11036 189 EQVYQWLEEAGWQIMGKTGVRVFHDYL 215 (255)
T ss_pred HHHHHHHHHCCCeEeeeeeEEEEeecc
Confidence 999999999999998776555444444
No 11
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.89 E-value=2e-21 Score=153.70 Aligned_cols=159 Identities=19% Similarity=0.184 Sum_probs=122.1
Q ss_pred HHHHHHHhhcCC-CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688 48 KEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 126 (235)
Q Consensus 48 ~~~~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 126 (235)
...+.+++.... .++.+|||+|||+|..+..+++..+..+++++|+|+.+++.++++.. ..++++..+|+.+.
T Consensus 99 ~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~------~~~i~~i~gD~e~l 172 (340)
T PLN02490 99 DMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIIEGDAEDL 172 (340)
T ss_pred HHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh------ccCCeEEeccHHhC
Confidence 344445554433 34689999999999999998887655799999999999999998754 23678899999988
Q ss_pred CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHH
Q 026688 127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 206 (235)
Q Consensus 127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (235)
+++.++||+|++..+++|++++...++++.++|+|||.+++....... .+..+... .....+.+.+++.+
T Consensus 173 p~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~-----~~~~r~~~-----~~~~~~~t~eEl~~ 242 (340)
T PLN02490 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT-----FWLSRFFA-----DVWMLFPKEEEYIE 242 (340)
T ss_pred CCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc-----hhHHHHhh-----hhhccCCCHHHHHH
Confidence 887889999999999999999999999999999999999887654321 11111100 00112457899999
Q ss_pred HHHHcCCceeEEEeeC
Q 026688 207 LCRACGLVDFKCTRNR 222 (235)
Q Consensus 207 ~l~~~Gf~~~~~~~~~ 222 (235)
+++++||+.+++...+
T Consensus 243 lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 243 WFTKAGFKDVKLKRIG 258 (340)
T ss_pred HHHHCCCeEEEEEEcC
Confidence 9999999988887543
No 12
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.89 E-value=1.6e-21 Score=154.79 Aligned_cols=164 Identities=24% Similarity=0.347 Sum_probs=123.2
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688 50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 129 (235)
Q Consensus 50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 129 (235)
.+.+...+....+++|||||||+|.++..+++.++. .|+|+|+|+.++..++......+. ..++.+...|++++++
T Consensus 111 ~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~--~~~i~~~~~d~e~lp~- 186 (322)
T PRK15068 111 WDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGN--DQRAHLLPLGIEQLPA- 186 (322)
T ss_pred HHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEeCCHHHCCC-
Confidence 345566666566789999999999999999998763 699999999998765543222111 3478999999998887
Q ss_pred CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcc--cchhHHHHHHhHhhcCCceeecCHHHHHHH
Q 026688 130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN--LIPFSRLLRQNMMQISGSYTFLSEREIEDL 207 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (235)
.+.||+|+|..+++|..++..+++++++.|+|||.+++.+...+.... ..+. .. +..........+.+++..+
T Consensus 187 ~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~-~~----y~~~~~~~~lps~~~l~~~ 261 (322)
T PRK15068 187 LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPG-DR----YAKMRNVYFIPSVPALKNW 261 (322)
T ss_pred cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCch-hH----HhcCccceeCCCHHHHHHH
Confidence 688999999999999999999999999999999999998765443211 1111 11 1112222334589999999
Q ss_pred HHHcCCceeEEEeeC
Q 026688 208 CRACGLVDFKCTRNR 222 (235)
Q Consensus 208 l~~~Gf~~~~~~~~~ 222 (235)
|+++||+++++....
T Consensus 262 L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 262 LERAGFKDVRIVDVS 276 (322)
T ss_pred HHHcCCceEEEEeCC
Confidence 999999988876443
No 13
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.89 E-value=3.9e-22 Score=144.09 Aligned_cols=147 Identities=27% Similarity=0.451 Sum_probs=111.6
Q ss_pred HHHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688 51 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 129 (235)
Q Consensus 51 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 129 (235)
+.+..... ..++.+|||+|||+|.++..+++.+. +++++|+++.+++. . .......+....+.+
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~------~-------~~~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK------R-------NVVFDNFDAQDPPFP 75 (161)
T ss_dssp HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH------T-------TSEEEEEECHTHHCH
T ss_pred HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh------h-------hhhhhhhhhhhhhcc
Confidence 33333443 35589999999999999999988876 99999999999888 1 233334444344445
Q ss_pred CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHh--HhhcCCceeecCHHHHHHH
Q 026688 130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN--MMQISGSYTFLSEREIEDL 207 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 207 (235)
.++||+|+|+.+++|++++..+++++.++|+|||++++.++.... .....+... ......+..+++.+++.++
T Consensus 76 ~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 150 (161)
T PF13489_consen 76 DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD-----PSPRSFLKWRYDRPYGGHVHFFSPDELRQL 150 (161)
T ss_dssp SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS-----HHHHHHHHCCGTCHHTTTTEEBBHHHHHHH
T ss_pred ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc-----hhhhHHHhcCCcCccCceeccCCHHHHHHH
Confidence 789999999999999999999999999999999999999987632 111111111 1111256689999999999
Q ss_pred HHHcCCceeE
Q 026688 208 CRACGLVDFK 217 (235)
Q Consensus 208 l~~~Gf~~~~ 217 (235)
++++||++++
T Consensus 151 l~~~G~~iv~ 160 (161)
T PF13489_consen 151 LEQAGFEIVE 160 (161)
T ss_dssp HHHTTEEEEE
T ss_pred HHHCCCEEEE
Confidence 9999999875
No 14
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.89 E-value=4.6e-21 Score=147.32 Aligned_cols=183 Identities=22% Similarity=0.280 Sum_probs=136.9
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688 48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 126 (235)
Q Consensus 48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 126 (235)
.....+...+...++.+|||+|||+|..+..+++.++ ..+++++|+++.+++.+++++...+. ..++.+...|+.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~ 115 (239)
T PRK00216 38 VWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL--SGNVEFVQGDAEAL 115 (239)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc--ccCeEEEecccccC
Confidence 3344555555555678999999999999999998875 57999999999999999998765432 34688999999887
Q ss_pred CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHH--------HHhHhh-------
Q 026688 127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL--------RQNMMQ------- 191 (235)
Q Consensus 127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~--------~~~~~~------- 191 (235)
+.+.+.||+|++..+++++.++..+++++.++|+|||.+++.+...............+ ...+..
T Consensus 116 ~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (239)
T PRK00216 116 PFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSY 195 (239)
T ss_pred CCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHH
Confidence 76667899999999999999999999999999999999999877653221111100000 000000
Q ss_pred -cCCceeecCHHHHHHHHHHcCCceeEEEe--eCcEEEEEEecC
Q 026688 192 -ISGSYTFLSEREIEDLCRACGLVDFKCTR--NRGFVMFTATKP 232 (235)
Q Consensus 192 -~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~--~~~~~~~~~~k~ 232 (235)
......+++.+++.++++++||+++.... .+...++++.||
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 196 LAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 00013456889999999999999887764 467888999886
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.89 E-value=1.1e-21 Score=151.99 Aligned_cols=156 Identities=17% Similarity=0.111 Sum_probs=117.8
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688 50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 129 (235)
Q Consensus 50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 129 (235)
...+++.+...++.+|||+|||+|.++..+++..|..+|+|+|+|+.+++.|+++ ++++.++|+.+++ +
T Consensus 18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~-~ 86 (255)
T PRK14103 18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----------GVDARTGDVRDWK-P 86 (255)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----------CCcEEEcChhhCC-C
Confidence 3456666776678999999999999999999987777999999999999999752 4778899998764 4
Q ss_pred CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHH--HhHh----hc--CCceeecCH
Q 026688 130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR--QNMM----QI--SGSYTFLSE 201 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~--~~~~----~~--~~~~~~~~~ 201 (235)
.++||+|+++.+++|++++..++++++++|+|||.+++..+.... .........+. ..|. .. .....+.++
T Consensus 87 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 165 (255)
T PRK14103 87 KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFD-APSHAAVRALARREPWAKLLRDIPFRVGAVVQTP 165 (255)
T ss_pred CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcC-ChhHHHHHHHhccCchhHHhcccccccCcCCCCH
Confidence 578999999999999999999999999999999999997654211 11111111111 0011 11 112345689
Q ss_pred HHHHHHHHHcCCceeE
Q 026688 202 REIEDLCRACGLVDFK 217 (235)
Q Consensus 202 ~~~~~~l~~~Gf~~~~ 217 (235)
+++.++|+++||.+..
T Consensus 166 ~~~~~~l~~aGf~v~~ 181 (255)
T PRK14103 166 AGYAELLTDAGCKVDA 181 (255)
T ss_pred HHHHHHHHhCCCeEEE
Confidence 9999999999997543
No 16
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.89 E-value=2.9e-21 Score=151.72 Aligned_cols=161 Identities=22% Similarity=0.302 Sum_probs=120.0
Q ss_pred HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688 51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 130 (235)
Q Consensus 51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 130 (235)
..+...+...++++|||+|||+|.++..++..++ ..|+|+|+|+.++..++..-..... ..++.+...++.+++..
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~--~~~v~~~~~~ie~lp~~- 186 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDN--DKRAILEPLGIEQLHEL- 186 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhcc--CCCeEEEECCHHHCCCC-
Confidence 4556666666689999999999999999988875 3799999999998765432211111 34678888888887753
Q ss_pred CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcc--cchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688 131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN--LIPFSRLLRQNMMQISGSYTFLSEREIEDLC 208 (235)
Q Consensus 131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (235)
.+||+|++..+++|.+++..++++++++|+|||.|++.+...+.... ..+. .++ ..........+..++..+|
T Consensus 187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~-~ry----~k~~nv~flpS~~~L~~~L 261 (314)
T TIGR00452 187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK-DRY----AKMKNVYFIPSVSALKNWL 261 (314)
T ss_pred CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCch-HHH----HhccccccCCCHHHHHHHH
Confidence 58999999999999999999999999999999999998876543211 1111 111 1112223456899999999
Q ss_pred HHcCCceeEEEe
Q 026688 209 RACGLVDFKCTR 220 (235)
Q Consensus 209 ~~~Gf~~~~~~~ 220 (235)
+++||+.+++..
T Consensus 262 ~~aGF~~V~i~~ 273 (314)
T TIGR00452 262 EKVGFENFRILD 273 (314)
T ss_pred HHCCCeEEEEEe
Confidence 999999988764
No 17
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.89 E-value=1.3e-21 Score=150.53 Aligned_cols=187 Identities=13% Similarity=0.151 Sum_probs=131.3
Q ss_pred CCCCCCHHHHHHHHhhcC--CCCCCeEEEecCCCchHHHHHHHc--CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCe
Q 026688 41 GGFPGPEKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 116 (235)
Q Consensus 41 ~~~~~~~~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 116 (235)
...|........+...+. ..++.+|||+|||+|..+..+++. .+..+++++|+|+.|++.|++++...+. ..++
T Consensus 34 ~~~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~--~~~v 111 (247)
T PRK15451 34 RSVPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA--PTPV 111 (247)
T ss_pred hcCCChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCe
Confidence 334556655555443321 234689999999999999988873 4678999999999999999999876543 3479
Q ss_pred eEEecccccCCCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHh----
Q 026688 117 LLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM---- 190 (235)
Q Consensus 117 ~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~---- 190 (235)
++.++|+.+.++ ..+|+|+++.+++|+++. ..++++++++|+|||.+++.+..........+....++..+.
T Consensus 112 ~~~~~d~~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g 189 (247)
T PRK15451 112 DVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANG 189 (247)
T ss_pred EEEeCChhhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcC
Confidence 999999988765 358999999999998754 478999999999999999988654332222222111111110
Q ss_pred -----------hcCCceeecCHHHHHHHHHHcCCceeEEE-eeCcEEEEEEec
Q 026688 191 -----------QISGSYTFLSEREIEDLCRACGLVDFKCT-RNRGFVMFTATK 231 (235)
Q Consensus 191 -----------~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~-~~~~~~~~~~~k 231 (235)
.........+.++..++|+++||+.+... ..-.+..++|.|
T Consensus 190 ~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 242 (247)
T PRK15451 190 YSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALK 242 (247)
T ss_pred CCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHHHHHHHHhHHHHhhee
Confidence 01112345689999999999999876654 233444555555
No 18
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.88 E-value=4.5e-22 Score=152.69 Aligned_cols=171 Identities=13% Similarity=0.139 Sum_probs=124.6
Q ss_pred CCCHHHHHHHHhhcC--CCCCCeEEEecCCCchHHHHHHHcC--CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEE
Q 026688 44 PGPEKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV 119 (235)
Q Consensus 44 ~~~~~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~ 119 (235)
|......+.+..+.. ..++.+|||+|||+|..+..++++. +.++++|+|+|+.+++.|++++...+. ..++++.
T Consensus 34 p~y~~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~--~~~v~~~ 111 (239)
T TIGR00740 34 PGYSNIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS--EIPVEIL 111 (239)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEE
Confidence 444555554443321 2346799999999999999998863 578999999999999999998876532 3478999
Q ss_pred ecccccCCCCCCceeEEEecccccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHh-------
Q 026688 120 RADISRLPFASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM------- 190 (235)
Q Consensus 120 ~~d~~~~~~~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~------- 190 (235)
++|+.+.+++ .+|+|++..+++|+++ ...+++++.++|+|||.+++.+..........+....++..+.
T Consensus 112 ~~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 189 (239)
T TIGR00740 112 CNDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSE 189 (239)
T ss_pred ECChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCH
Confidence 9999887754 5899999999999864 3689999999999999999998755332222222222222111
Q ss_pred --------hcCCceeecCHHHHHHHHHHcCCceeEE
Q 026688 191 --------QISGSYTFLSEREIEDLCRACGLVDFKC 218 (235)
Q Consensus 191 --------~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 218 (235)
.........+.+++.++++++||+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 190 LEISQKRTALENVMRTDSIETHKARLKNVGFSHVEL 225 (239)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchHHH
Confidence 1112345789999999999999986554
No 19
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.88 E-value=7.2e-21 Score=159.85 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=126.7
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688 49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 128 (235)
Q Consensus 49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 128 (235)
..+.+.+.+...++.+|||+|||+|..+..+++.. .++|+|+|+|+.+++.|+++.... ..++.+.+.|+...++
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~----~~~v~~~~~d~~~~~~ 328 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR----KCSVEFEVADCTKKTY 328 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC----CCceEEEEcCcccCCC
Confidence 44566666666667899999999999999888765 569999999999999998876432 3478999999988877
Q ss_pred CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688 129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 208 (235)
Q Consensus 129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (235)
+.++||+|++..+++|++++..++++++++|+|||.+++.++..........+.. .+... .....+.+++.+++
T Consensus 329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~----~~~~~--g~~~~~~~~~~~~l 402 (475)
T PLN02336 329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAE----YIKQR--GYDLHDVQAYGQML 402 (475)
T ss_pred CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHH----HHHhc--CCCCCCHHHHHHHH
Confidence 7789999999999999999999999999999999999999876543221111111 11111 13467899999999
Q ss_pred HHcCCceeEEEe
Q 026688 209 RACGLVDFKCTR 220 (235)
Q Consensus 209 ~~~Gf~~~~~~~ 220 (235)
+++||+++....
T Consensus 403 ~~aGF~~i~~~d 414 (475)
T PLN02336 403 KDAGFDDVIAED 414 (475)
T ss_pred HHCCCeeeeeec
Confidence 999999886653
No 20
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.88 E-value=7.7e-21 Score=146.99 Aligned_cols=154 Identities=28% Similarity=0.368 Sum_probs=120.5
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688 48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 127 (235)
Q Consensus 48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 127 (235)
...+.+.+.+...+..+|||+|||+|.++..+.+.+ .+++++|+|+.+++.++++.. ...+.++|+..++
T Consensus 29 ~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~s~~~l~~a~~~~~--------~~~~~~~d~~~~~ 98 (251)
T PRK10258 29 QSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDA--------ADHYLAGDIESLP 98 (251)
T ss_pred HHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC--------CCCEEEcCcccCc
Confidence 344566666665567899999999999999998865 499999999999999988632 3467889998888
Q ss_pred CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHH
Q 026688 128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 207 (235)
Q Consensus 128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (235)
+++++||+|+++.++++.+++..++.++.++|+|||.++++++.... .+.....+...........+++.+++..+
T Consensus 99 ~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~----~~el~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (251)
T PRK10258 99 LATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS----LPELHQAWQAVDERPHANRFLPPDAIEQA 174 (251)
T ss_pred CCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc----hHHHHHHHHHhccCCccccCCCHHHHHHH
Confidence 88889999999999999999999999999999999999999877542 11112222211222234567899999999
Q ss_pred HHHcCCce
Q 026688 208 CRACGLVD 215 (235)
Q Consensus 208 l~~~Gf~~ 215 (235)
+...|+..
T Consensus 175 l~~~~~~~ 182 (251)
T PRK10258 175 LNGWRYQH 182 (251)
T ss_pred HHhCCcee
Confidence 99888764
No 21
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.87 E-value=5.9e-20 Score=143.69 Aligned_cols=155 Identities=21% Similarity=0.288 Sum_probs=119.6
Q ss_pred CCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEE
Q 026688 58 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 136 (235)
Q Consensus 58 ~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 136 (235)
...++.+|||+|||+|..+..+++. ++..+|+++|+++.+++.|+++....+ ..++++...|+.+++++.+.||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g---~~~v~~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG---YTNVEFRLGEIEALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC---CCCEEEEEcchhhCCCCCCceeEE
Confidence 3456889999999999988776665 555689999999999999999887654 347889999998888777899999
Q ss_pred EecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCcee
Q 026688 137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF 216 (235)
Q Consensus 137 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 216 (235)
+++.+++|.++..++++++.++|+|||.+++.+....... ........ ..+. ......++..++.++|+++||..+
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~~~~~~~~-~~~~--~~~~~~~~~~e~~~~l~~aGf~~v 226 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGEL-PEEIRNDA-ELYA--GCVAGALQEEEYLAMLAEAGFVDI 226 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCC-CHHHHHhH-HHHh--ccccCCCCHHHHHHHHHHCCCCce
Confidence 9999999999999999999999999999999887653311 11111111 1111 112235678999999999999887
Q ss_pred EEE
Q 026688 217 KCT 219 (235)
Q Consensus 217 ~~~ 219 (235)
.+.
T Consensus 227 ~i~ 229 (272)
T PRK11873 227 TIQ 229 (272)
T ss_pred EEE
Confidence 664
No 22
>PRK08317 hypothetical protein; Provisional
Probab=99.87 E-value=2.4e-20 Score=143.36 Aligned_cols=170 Identities=28% Similarity=0.297 Sum_probs=129.0
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 124 (235)
.....+.+.+.+...++.+|||+|||+|.++..+++.. +.++++++|+++.+++.++++.... ..++.+...|+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~----~~~~~~~~~d~~ 79 (241)
T PRK08317 4 FRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL----GPNVEFVRGDAD 79 (241)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC----CCceEEEecccc
Confidence 34455667777787778999999999999999998876 6679999999999999999873322 347889999998
Q ss_pred cCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCc---ccchhHHHHHHhHhhcCCceeecCH
Q 026688 125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF---NLIPFSRLLRQNMMQISGSYTFLSE 201 (235)
Q Consensus 125 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (235)
..+++.+.||+|++..+++|+.++..+++++.++|+|||.+++.++...... ........+...+.. ......+.
T Consensus 80 ~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 157 (241)
T PRK08317 80 GLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD--HFADPWLG 157 (241)
T ss_pred cCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh--cCCCCcHH
Confidence 8777778999999999999999999999999999999999999886432210 111122222222221 11233556
Q ss_pred HHHHHHHHHcCCceeEEEee
Q 026688 202 REIEDLCRACGLVDFKCTRN 221 (235)
Q Consensus 202 ~~~~~~l~~~Gf~~~~~~~~ 221 (235)
..+..+++++||.++.....
T Consensus 158 ~~~~~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 158 RRLPGLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHHHHHHcCCCceeEEEE
Confidence 78999999999998766543
No 23
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.87 E-value=9e-21 Score=144.61 Aligned_cols=186 Identities=20% Similarity=0.355 Sum_probs=133.8
Q ss_pred hhhhcccccccc--cccceecccccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCH
Q 026688 18 TEFFRMPFMSFI--YERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE 95 (235)
Q Consensus 18 ~~~~~~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~ 95 (235)
.+|.++++.-.+ .+.-|++.+.+ +.+...+..-.+++|||||||.|+++..++++++ ..|+|+|.++
T Consensus 80 ~PWRKGPf~l~gi~IDtEWrSd~KW----------~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~ 148 (315)
T PF08003_consen 80 MPWRKGPFSLFGIHIDTEWRSDWKW----------DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSP 148 (315)
T ss_pred CCcccCCcccCCEeecccccccchH----------HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCCh
Confidence 456666655444 45567766543 5666677666789999999999999999999986 4799999998
Q ss_pred HHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCC
Q 026688 96 NMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGP 175 (235)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~ 175 (235)
....+.+-.-.-.+. ...+......++++|. .+.||+|+|.++++|..+|...|+++++.|+|||.+++.+...++.
T Consensus 149 lf~~QF~~i~~~lg~--~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 149 LFYLQFEAIKHFLGQ--DPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD 225 (315)
T ss_pred HHHHHHHHHHHHhCC--CccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence 766654321111111 2233344356677775 6889999999999999999999999999999999999999887654
Q ss_pred cccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEe
Q 026688 176 FNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR 220 (235)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 220 (235)
....-.... .+..........|...+..+|+++||+.+++..
T Consensus 226 ~~~~L~P~~---rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 226 ENTVLVPED---RYAKMRNVWFIPSVAALKNWLERAGFKDVRCVD 267 (315)
T ss_pred CceEEccCC---cccCCCceEEeCCHHHHHHHHHHcCCceEEEec
Confidence 332211111 112233445566999999999999999888763
No 24
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.87 E-value=5.8e-20 Score=139.73 Aligned_cols=176 Identities=22% Similarity=0.311 Sum_probs=130.5
Q ss_pred HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688 51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 129 (235)
Q Consensus 51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 129 (235)
..+.+.+...++.+|||+|||+|..+..+++..+. .+++++|+++.+++.++++.. . ..++++...|+.+.+++
T Consensus 29 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~----~~~i~~~~~d~~~~~~~ 103 (223)
T TIGR01934 29 RRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L----PLNIEFIQADAEALPFE 103 (223)
T ss_pred HHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c----CCCceEEecchhcCCCC
Confidence 44555555556889999999999999999998865 689999999999999998765 1 44788999999887776
Q ss_pred CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhH----hh----cC--------
Q 026688 130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM----MQ----IS-------- 193 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~----~~----~~-------- 193 (235)
.+.||+|++..++++..++..+++.+.+.|+|||.+++.+...............+...+ .. ..
T Consensus 104 ~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (223)
T TIGR01934 104 DNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPE 183 (223)
T ss_pred CCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHH
Confidence 678999999999999999999999999999999999998875432211111111110000 00 00
Q ss_pred CceeecCHHHHHHHHHHcCCceeEEEe--eCcEEEEEEec
Q 026688 194 GSYTFLSEREIEDLCRACGLVDFKCTR--NRGFVMFTATK 231 (235)
Q Consensus 194 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~--~~~~~~~~~~k 231 (235)
....+++.+++.++|+++||+++.+.. .+...+++++|
T Consensus 184 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 184 SIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 012356889999999999999876654 33456777764
No 25
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.87 E-value=8.4e-22 Score=146.11 Aligned_cols=152 Identities=21% Similarity=0.279 Sum_probs=116.0
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCC----CeeEEecccccCCCCCCceeEEE
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE----NFLLVRADISRLPFASSSIDAVH 137 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~D~i~ 137 (235)
+++|||+|||.|-++..|++.+. +|+|+|+++.+++.|+++....+.. .. ++++.+.|++... +.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP~~-~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDPVL-EGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCchh-ccccceeeehhhcchhhcc---cccceee
Confidence 47899999999999999999986 9999999999999999996554321 12 3667777777653 4599999
Q ss_pred ecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCccc-chhHHHHHHhHhhcCCc--eeecCHHHHHHHHHHcCCc
Q 026688 138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL-IPFSRLLRQNMMQISGS--YTFLSEREIEDLCRACGLV 214 (235)
Q Consensus 138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~Gf~ 214 (235)
|..+++|+.|+..+++.+.+.|+|||.+++++.++...... .-+.......+.....| ..+.++.++..+++.+++.
T Consensus 164 csevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~ 243 (282)
T KOG1270|consen 164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQ 243 (282)
T ss_pred eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999887532111 11222222112222222 5588999999999999987
Q ss_pred eeEEE
Q 026688 215 DFKCT 219 (235)
Q Consensus 215 ~~~~~ 219 (235)
+..+.
T Consensus 244 v~~v~ 248 (282)
T KOG1270|consen 244 VNDVV 248 (282)
T ss_pred hhhhh
Confidence 65543
No 26
>PRK05785 hypothetical protein; Provisional
Probab=99.86 E-value=2.7e-20 Score=141.00 Aligned_cols=157 Identities=20% Similarity=0.127 Sum_probs=111.7
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 141 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~ 141 (235)
+.+|||+|||+|..+..+++.. ..+|+|+|+|++|++.|+++ ..+.++|++++|+++++||+|++..+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~-----------~~~~~~d~~~lp~~d~sfD~v~~~~~ 119 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA-----------DDKVVGSFEALPFRDKSFDVVMSSFA 119 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc-----------cceEEechhhCCCCCCCEEEEEecCh
Confidence 6899999999999999999885 35999999999999999863 12567899999998999999999999
Q ss_pred ccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHH--------hHhh--------cCCceeecCHHHHH
Q 026688 142 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ--------NMMQ--------ISGSYTFLSEREIE 205 (235)
Q Consensus 142 l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~--------~~~~--------~~~~~~~~~~~~~~ 205 (235)
++|++++++.++++.|+|||. +.+.+...........+...+.. .+.. ......+.+.+++.
T Consensus 120 l~~~~d~~~~l~e~~RvLkp~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~ 197 (226)
T PRK05785 120 LHASDNIEKVIAEFTRVSRKQ--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHR 197 (226)
T ss_pred hhccCCHHHHHHHHHHHhcCc--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999993 22333332111111111111000 0000 11124567889999
Q ss_pred HHHHHcC-CceeEEEeeCcEEEEEEecC
Q 026688 206 DLCRACG-LVDFKCTRNRGFVMFTATKP 232 (235)
Q Consensus 206 ~~l~~~G-f~~~~~~~~~~~~~~~~~k~ 232 (235)
++++++| +...+....|...+++++|.
T Consensus 198 ~~~~~~~~~~~~~~~~~G~~~~~~~~k~ 225 (226)
T PRK05785 198 EIFEKYADIKVYEERGLGLVYFVVGSSR 225 (226)
T ss_pred HHHHHHhCceEEEEccccEEEEEEEeeC
Confidence 9999964 33333346677888888874
No 27
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.86 E-value=7.1e-21 Score=136.11 Aligned_cols=107 Identities=22% Similarity=0.441 Sum_probs=96.1
Q ss_pred CCCeEEEecCCCchHHHHHH-HcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--CCCCceeEEE
Q 026688 61 LGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVH 137 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~-~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i~ 137 (235)
.+.+|||+|||+|.++..++ +..+..+++|+|+|+.+++.|++++...+ ..++++.+.|+.+++ ++ ++||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~---~~ni~~~~~d~~~l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG---LDNIEFIQGDIEDLPQELE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT---STTEEEEESBTTCGCGCSS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc---ccccceEEeehhccccccC-CCeeEEE
Confidence 47899999999999999999 55677899999999999999999888765 348999999999876 44 7999999
Q ss_pred ecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688 138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
+..+++|+.++..+++++.++|+++|.+++..+.
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999999999999999999999999887
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.86 E-value=3.6e-20 Score=140.99 Aligned_cols=146 Identities=17% Similarity=0.157 Sum_probs=118.1
Q ss_pred CeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccc
Q 026688 63 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI 142 (235)
Q Consensus 63 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l 142 (235)
++|||+|||+|..+..+++..+..+++|+|+|+.+++.+++++...+. ..++++...|+...+++ ++||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl--~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL--QGRIRIFYRDSAKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC--CcceEEEecccccCCCC-CCCCEeehHHHH
Confidence 479999999999999999988777999999999999999999877654 45789999999766554 589999999999
Q ss_pred cccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeC
Q 026688 143 HCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNR 222 (235)
Q Consensus 143 ~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 222 (235)
+|+.+...+++++.++|+|||.+++.++..+... +.. .........+..+|.++++++||++++....+
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~--------~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~ 146 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADFIANLLS---AIE--------HEETTSYLVTREEWAELLARNNLRVVEGVDAS 146 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCc---ccc--------ccccccccCCHHHHHHHHHHCCCeEEEeEECc
Confidence 9999999999999999999999999887542110 000 00011235788999999999999998877544
No 29
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.85 E-value=3e-20 Score=143.81 Aligned_cols=162 Identities=21% Similarity=0.185 Sum_probs=115.2
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688 49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 128 (235)
Q Consensus 49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 128 (235)
.++.+.+.+...++.+|||||||.|.++..++++. +++|+|+.+|++..+.+++++...++ ..++++...|..+.+
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl--~~~v~v~~~D~~~~~- 125 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGL--EDRVEVRLQDYRDLP- 125 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS--SSTEEEEES-GGG---
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEeeccccC-
Confidence 34567788888899999999999999999999995 46999999999999999999998776 457999999998765
Q ss_pred CCCceeEEEecccccccC--ChHHHHHHHHHhccCCcEEEEEEeccCCCccc------chhHHHHHHhHhhcCCceeecC
Q 026688 129 ASSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL------IPFSRLLRQNMMQISGSYTFLS 200 (235)
Q Consensus 129 ~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 200 (235)
.+||.|++..+++|+. +...+++++.++|+|||.+++........... ..+..+ . ..+.....+
T Consensus 126 --~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~k---y---iFPgg~lps 197 (273)
T PF02353_consen 126 --GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRK---Y---IFPGGYLPS 197 (273)
T ss_dssp ---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHH---H---TSTTS---B
T ss_pred --CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEE---e---eCCCCCCCC
Confidence 3899999999999995 44799999999999999999887765331100 011111 1 112334567
Q ss_pred HHHHHHHHHHcCCceeEEEeeC
Q 026688 201 EREIEDLCRACGLVDFKCTRNR 222 (235)
Q Consensus 201 ~~~~~~~l~~~Gf~~~~~~~~~ 222 (235)
..++...+++.||++......+
T Consensus 198 ~~~~~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 198 LSEILRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHHHHHHTT-EEEEEEE-H
T ss_pred HHHHHHHHhcCCEEEEEEEEcC
Confidence 8899999999999988776543
No 30
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.85 E-value=9.8e-21 Score=124.52 Aligned_cols=95 Identities=35% Similarity=0.579 Sum_probs=83.6
Q ss_pred EEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccccccc
Q 026688 66 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW 145 (235)
Q Consensus 66 LdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~ 145 (235)
||+|||+|..+..++++ +..+++++|+++.+++.++++... .++.+...|+.++|+++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceeec
Confidence 89999999999999999 456999999999999999998754 34669999999999999999999999999999
Q ss_pred CChHHHHHHHHHhccCCcEEEE
Q 026688 146 SSPSTGVAEISRVLRPGGVFVG 167 (235)
Q Consensus 146 ~~~~~~l~~~~~~L~pgG~li~ 167 (235)
+++.++++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 8889999999999999999986
No 31
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.85 E-value=9.9e-20 Score=135.37 Aligned_cols=147 Identities=20% Similarity=0.259 Sum_probs=111.0
Q ss_pred HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCC
Q 026688 52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 131 (235)
Q Consensus 52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 131 (235)
.+.+.+...++.+|||+|||+|..+..+++++. +|+|+|+|+.+++.+++.....+ ..++++.+.|+.+.+++ +
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~ 94 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAEN---LDNLHTAVVDLNNLTFD-G 94 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcC---CCcceEEecChhhCCcC-C
Confidence 444455555678999999999999999999865 99999999999999999887654 24588888999876654 6
Q ss_pred ceeEEEecccccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHH
Q 026688 132 SIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 209 (235)
Q Consensus 132 ~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 209 (235)
+||+|++..+++|++. ...+++++.++|+|||.+++......... +. ..+....++.+++.+.++
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~---~~----------~~~~~~~~~~~el~~~~~ 161 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY---PC----------TVGFPFAFKEGELRRYYE 161 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC---CC----------CCCCCCccCHHHHHHHhC
Confidence 7999999999988763 46899999999999999766443321110 00 011223478899998887
Q ss_pred HcCCceeEEE
Q 026688 210 ACGLVDFKCT 219 (235)
Q Consensus 210 ~~Gf~~~~~~ 219 (235)
||+++...
T Consensus 162 --~~~~~~~~ 169 (197)
T PRK11207 162 --GWEMVKYN 169 (197)
T ss_pred --CCeEEEee
Confidence 89876653
No 32
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=1.2e-19 Score=138.34 Aligned_cols=162 Identities=18% Similarity=0.169 Sum_probs=131.1
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688 49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 128 (235)
Q Consensus 49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 128 (235)
.++.+.+.+...++.+|||||||.|.++..+++.. +++|+|+++|+++.+.+++++...++ ..++++...|..+..
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl--~~~v~v~l~d~rd~~- 135 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGL--EDNVEVRLQDYRDFE- 135 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCC--CcccEEEeccccccc-
Confidence 45677888899999999999999999999999987 67999999999999999999998886 458999999998764
Q ss_pred CCCceeEEEecccccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCc--ccchhHHHHHHhHhhcCCceeecCHHHH
Q 026688 129 ASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPF--NLIPFSRLLRQNMMQISGSYTFLSEREI 204 (235)
Q Consensus 129 ~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (235)
+.||.|++..+++|+.. ...+++.+.++|+|||.+++...+..... ...+|..+. ..+.....+..++
T Consensus 136 --e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~y------iFPgG~lPs~~~i 207 (283)
T COG2230 136 --EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKY------IFPGGELPSISEI 207 (283)
T ss_pred --cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHh------CCCCCcCCCHHHH
Confidence 44999999999999976 57999999999999999999888764422 112222211 2233445678899
Q ss_pred HHHHHHcCCceeEEEeeC
Q 026688 205 EDLCRACGLVDFKCTRNR 222 (235)
Q Consensus 205 ~~~l~~~Gf~~~~~~~~~ 222 (235)
.....++||.+......+
T Consensus 208 ~~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 208 LELASEAGFVVLDVESLR 225 (283)
T ss_pred HHHHHhcCcEEehHhhhc
Confidence 999999999987766443
No 33
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.84 E-value=2.2e-20 Score=126.78 Aligned_cols=107 Identities=28% Similarity=0.401 Sum_probs=88.3
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc-ccCCCCCCceeEEEec
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLPFASSSIDAVHAG 139 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~i~~~ 139 (235)
|+.+|||+|||+|.++..+++..+..+++++|+|+.+++.++++....+. ..++++.+.|+ ..... .+.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~~~~-~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL--SDRITFVQGDAEFDPDF-LEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT--TTTEEEEESCCHGGTTT-SSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEEECccccCccc-CCCCCEEEEC
Confidence 47899999999999999999966677999999999999999999955443 56899999999 33332 3679999999
Q ss_pred c-ccccc---CChHHHHHHHHHhccCCcEEEEEEe
Q 026688 140 A-AIHCW---SSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 140 ~-~l~~~---~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
. +++++ ++..++++++.+.|+|||++++.++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 8 44444 3446899999999999999999763
No 34
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.84 E-value=4.2e-19 Score=141.06 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=122.3
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688 50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 129 (235)
Q Consensus 50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 129 (235)
.+.+.+.....+..+|||+|||+|.++..+++++|..+++++|. +.+++.+++++...+. ..++++..+|+.+.+++
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl--~~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV--ADRMRGIAVDIYKESYP 214 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc--cceEEEEecCccCCCCC
Confidence 34455556666678999999999999999999999889999998 7899999998887665 45799999999765554
Q ss_pred CCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhc---CCceeecCHHHH
Q 026688 130 SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI---SGSYTFLSEREI 204 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 204 (235)
.+|+|++..++|++++. .++++++++.|+|||++++.+....... .+....+....... .....+.+.+++
T Consensus 215 --~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 290 (306)
T TIGR02716 215 --EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE--NPNFDYLSHYILGAGMPFSVLGFKEQARY 290 (306)
T ss_pred --CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC--CchhhHHHHHHHHcccccccccCCCHHHH
Confidence 36999999999988765 4799999999999999999987654322 22222222211111 111234457999
Q ss_pred HHHHHHcCCceeEE
Q 026688 205 EDLCRACGLVDFKC 218 (235)
Q Consensus 205 ~~~l~~~Gf~~~~~ 218 (235)
.++|+++||+.+.+
T Consensus 291 ~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 291 KEILESLGYKDVTM 304 (306)
T ss_pred HHHHHHcCCCeeEe
Confidence 99999999997764
No 35
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.84 E-value=1.3e-19 Score=129.63 Aligned_cols=174 Identities=18% Similarity=0.232 Sum_probs=125.4
Q ss_pred HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCee-EEecccccCC-C
Q 026688 51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL-LVRADISRLP-F 128 (235)
Q Consensus 51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~d~~~~~-~ 128 (235)
..+..++.......|||+|||+|..-...- ..|..+|+++|+++.|-+.+.+.+++.. ..++. |+.++.+++| +
T Consensus 66 s~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k---~~~~~~fvva~ge~l~~l 141 (252)
T KOG4300|consen 66 SGIYYFLGKSGKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKK---PLQVERFVVADGENLPQL 141 (252)
T ss_pred hhhHHHhcccCccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhcc---CcceEEEEeechhcCccc
Confidence 334445666656789999999998877653 3456799999999999999999888763 45665 8999999987 7
Q ss_pred CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688 129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 208 (235)
Q Consensus 129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (235)
+++++|.|++..+++...++.+.|+++.++|+|||.+++.++..........+.+....-..........++. +..+.|
T Consensus 142 ~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltr-d~~e~L 220 (252)
T KOG4300|consen 142 ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTR-DTGELL 220 (252)
T ss_pred ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEeh-hHHHHh
Confidence 8899999999999999999999999999999999999999988753222222222221111112222334444 456778
Q ss_pred HHcCCceeEEEeeC--cEEEEEE
Q 026688 209 RACGLVDFKCTRNR--GFVMFTA 229 (235)
Q Consensus 209 ~~~Gf~~~~~~~~~--~~~~~~~ 229 (235)
+++-|+........ ..+.+++
T Consensus 221 eda~f~~~~~kr~~~~ttw~~V~ 243 (252)
T KOG4300|consen 221 EDAEFSIDSCKRFNFGTTWVIVE 243 (252)
T ss_pred hhcccccchhhcccCCceEEEEe
Confidence 89999887765433 3444343
No 36
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.83 E-value=2.7e-19 Score=137.49 Aligned_cols=142 Identities=27% Similarity=0.422 Sum_probs=115.1
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 140 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~ 140 (235)
.+.+|||+|||+|.++..+++.++..+++++|+++.+++.++++.. .++.+...|+.+.+++.++||+|++..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~vi~~~ 106 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLPLEDSSFDLIVSNL 106 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCCCCCCceeEEEEhh
Confidence 3579999999999999999999888889999999999999988653 367889999998887778999999999
Q ss_pred cccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688 141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 219 (235)
Q Consensus 141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 219 (235)
+++|..++..+++++.++|+|||.+++.++..... ..+...+.. ....+.+.+++.+++.++ |..+...
T Consensus 107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 107 ALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTL-------HELRQSFGQ--HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred hhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCH-------HHHHHHHHH--hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 99999999999999999999999999988765321 111111111 224567889999999988 8766554
No 37
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.83 E-value=1.3e-18 Score=127.44 Aligned_cols=136 Identities=21% Similarity=0.162 Sum_probs=110.2
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 141 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~ 141 (235)
+.+|||+|||+|..+..+++..+.++|+++|+++.+++.|+++....+. .++++...|+.+.+. .++||+|++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l---~~i~~~~~d~~~~~~-~~~fDlV~~~~- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL---KNVTVVHGRAEEFGQ-EEKFDVVTSRA- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC---CCEEEEeccHhhCCC-CCCccEEEEcc-
Confidence 7899999999999999999877788999999999999999999888763 359999999988765 67899999864
Q ss_pred ccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE--
Q 026688 142 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT-- 219 (235)
Q Consensus 142 l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~-- 219 (235)
+.+...+++.+.++|+|||.+++..... ...++..+.+..|+.+..+.
T Consensus 121 ---~~~~~~~l~~~~~~LkpGG~lv~~~~~~---------------------------~~~~l~~~~~~~~~~~~~~~~~ 170 (187)
T PRK00107 121 ---VASLSDLVELCLPLLKPGGRFLALKGRD---------------------------PEEEIAELPKALGGKVEEVIEL 170 (187)
T ss_pred ---ccCHHHHHHHHHHhcCCCeEEEEEeCCC---------------------------hHHHHHHHHHhcCceEeeeEEE
Confidence 4567789999999999999999875432 34557777788899866655
Q ss_pred ----eeCcEEEEEEecC
Q 026688 220 ----RNRGFVMFTATKP 232 (235)
Q Consensus 220 ----~~~~~~~~~~~k~ 232 (235)
..+...+.+.+|+
T Consensus 171 ~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 171 TLPGLDGERHLVIIRKK 187 (187)
T ss_pred ecCCCCCcEEEEEEecC
Confidence 2345566666663
No 38
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.83 E-value=7.1e-19 Score=136.60 Aligned_cols=157 Identities=15% Similarity=0.145 Sum_probs=116.0
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688 49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 128 (235)
Q Consensus 49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 128 (235)
..+.++..+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.++++. .++.+...|+....
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--------~~~~~~~~d~~~~~- 89 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--------PDCQFVEADIASWQ- 89 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--------CCCeEEECchhccC-
Confidence 345666666666689999999999999999999887789999999999999998863 35788899987654
Q ss_pred CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHH------HHhHhhcC-CceeecCH
Q 026688 129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL------RQNMMQIS-GSYTFLSE 201 (235)
Q Consensus 129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~ 201 (235)
+.++||+|+++.+++|++++..+++++.++|+|||.+++..+..... ........+ ...+.... ....+.++
T Consensus 90 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 168 (258)
T PRK01683 90 PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDE-PSHVLMREVAENGPWEQNLPDRGARRAPLPPP 168 (258)
T ss_pred CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCC-HHHHHHHHHHccCchHHHhccccccCcCCCCH
Confidence 34689999999999999999999999999999999999875432110 000001100 11111000 11244677
Q ss_pred HHHHHHHHHcCCce
Q 026688 202 REIEDLCRACGLVD 215 (235)
Q Consensus 202 ~~~~~~l~~~Gf~~ 215 (235)
.++.+++.++|+.+
T Consensus 169 ~~~~~~l~~~g~~v 182 (258)
T PRK01683 169 HAYYDALAPAACRV 182 (258)
T ss_pred HHHHHHHHhCCCce
Confidence 88999999999864
No 39
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.82 E-value=7.8e-19 Score=130.34 Aligned_cols=147 Identities=16% Similarity=0.157 Sum_probs=109.2
Q ss_pred HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688 51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 130 (235)
Q Consensus 51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 130 (235)
..+.+.+...++.+|||+|||+|.++..+++++. +|+++|+|+.+++.++++....+. ++.+...|+...+++
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~~~----~v~~~~~d~~~~~~~- 92 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKARENL----PLRTDAYDINAAALN- 92 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHhCC----CceeEeccchhcccc-
Confidence 3455555555578999999999999999999865 999999999999999988765542 367777887665543
Q ss_pred CceeEEEecccccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688 131 SSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 208 (235)
Q Consensus 131 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (235)
++||+|++..+++|++. ...+++++.++|+|||++++.+......... .......++++++.+++
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~-------------~~~~~~~~~~~el~~~f 159 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC-------------HMPFSFTFKEDELRQYY 159 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC-------------CCCcCccCCHHHHHHHh
Confidence 57999999999998854 3589999999999999977665432211000 00112357899999988
Q ss_pred HHcCCceeEEE
Q 026688 209 RACGLVDFKCT 219 (235)
Q Consensus 209 ~~~Gf~~~~~~ 219 (235)
. +|+++...
T Consensus 160 ~--~~~~~~~~ 168 (195)
T TIGR00477 160 A--DWELLKYN 168 (195)
T ss_pred C--CCeEEEee
Confidence 6 57766554
No 40
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.81 E-value=2e-18 Score=130.85 Aligned_cols=162 Identities=19% Similarity=0.243 Sum_probs=117.3
Q ss_pred HHHHHHHHhhcC--CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688 47 EKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124 (235)
Q Consensus 47 ~~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 124 (235)
....+.+.+++. ..++.+|||+|||+|.++..+++.+. +++|+|+|+.++..|++++...+. ..++.+.+.|+.
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~ 114 (219)
T TIGR02021 39 AAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRDV--AGNVEFEVNDLL 114 (219)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECChh
Confidence 344455666665 34578999999999999999998754 999999999999999998876532 247899999998
Q ss_pred cCCCCCCceeEEEecccccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhh--cCCceeecC
Q 026688 125 RLPFASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--ISGSYTFLS 200 (235)
Q Consensus 125 ~~~~~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 200 (235)
+.+ ++||+|++..+++|++. ...+++++.+++++++.+.+.... ........+...+.. ......+++
T Consensus 115 ~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (219)
T TIGR02021 115 SLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKT-----AWLAFLKMIGELFPGSSRATSAYLHP 186 (219)
T ss_pred hCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCc-----hHHHHHHHHHhhCcCcccccceEEec
Confidence 765 78999999999988864 357899999998876555542211 111111111122111 122356789
Q ss_pred HHHHHHHHHHcCCceeEEEe
Q 026688 201 EREIEDLCRACGLVDFKCTR 220 (235)
Q Consensus 201 ~~~~~~~l~~~Gf~~~~~~~ 220 (235)
++++.++++++||+++....
T Consensus 187 ~~~~~~~l~~~Gf~v~~~~~ 206 (219)
T TIGR02021 187 MTDLERALGELGWKIVREGL 206 (219)
T ss_pred HHHHHHHHHHcCceeeeeec
Confidence 99999999999999887753
No 41
>PRK06202 hypothetical protein; Provisional
Probab=99.81 E-value=9.9e-19 Score=133.59 Aligned_cols=157 Identities=15% Similarity=0.084 Sum_probs=110.1
Q ss_pred CCCCCCeEEEecCCCchHHHHHHH----cCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCce
Q 026688 58 KPVLGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 133 (235)
Q Consensus 58 ~~~~~~~vLdiG~G~G~~~~~l~~----~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 133 (235)
...++.+|||+|||+|.++..+++ .++..+++|+|+++.+++.|+++... .++.+...+...++.+.++|
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEEecccccccCCCc
Confidence 334568999999999999888875 35566999999999999999887532 24566666666555556799
Q ss_pred eEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhH-------hhcCCceeecCHHHH
Q 026688 134 DAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM-------MQISGSYTFLSEREI 204 (235)
Q Consensus 134 D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 204 (235)
|+|+++.++||++++ ..+++++.++++ |.+++.+....... ...+........ .......++++++++
T Consensus 131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el 207 (232)
T PRK06202 131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLA-YALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAEL 207 (232)
T ss_pred cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHH-HHHHHHHHHHhccCceeeccchHHHHhhcCHHHH
Confidence 999999999999886 379999999998 67777666553100 000000000000 011223568999999
Q ss_pred HHHHHHcCCceeEEEeeCcE
Q 026688 205 EDLCRACGLVDFKCTRNRGF 224 (235)
Q Consensus 205 ~~~l~~~Gf~~~~~~~~~~~ 224 (235)
.+++++ ||++.....+...
T Consensus 208 ~~ll~~-Gf~~~~~~~~~~~ 226 (232)
T PRK06202 208 AALAPQ-GWRVERQWPFRYL 226 (232)
T ss_pred HHHhhC-CCeEEeccceeeE
Confidence 999999 9998766655433
No 42
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.81 E-value=2.6e-18 Score=135.10 Aligned_cols=136 Identities=18% Similarity=0.189 Sum_probs=105.3
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 140 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~ 140 (235)
++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.+++++...+ .++++...|+...++ .++||+|++..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~~----l~v~~~~~D~~~~~~-~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKEN----LNIRTGLYDINSASI-QEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEechhcccc-cCCccEEEEcc
Confidence 456999999999999999998865 99999999999999998887654 267888888876554 57899999999
Q ss_pred cccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEE
Q 026688 141 AIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 218 (235)
Q Consensus 141 ~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 218 (235)
+++|++. ...+++++.++|+|||++++.......... . .......+++.++.+.++ +|+++..
T Consensus 193 vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~-~------------~~p~~~~~~~~el~~~~~--~~~i~~~ 257 (287)
T PRK12335 193 VLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP-C------------PMPFSFTFKEGELKDYYQ--DWEIVKY 257 (287)
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC-C------------CCCCCcccCHHHHHHHhC--CCEEEEE
Confidence 9998863 358999999999999997776543221100 0 011234578999999886 4877665
No 43
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.80 E-value=1.6e-17 Score=122.79 Aligned_cols=142 Identities=20% Similarity=0.190 Sum_probs=108.6
Q ss_pred CCCCHHH-HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688 43 FPGPEKE-FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121 (235)
Q Consensus 43 ~~~~~~~-~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (235)
.|..... ...+.+.+...++.+|||+|||+|.++..+++..+..+++++|+++.+++.+++++...+. .++++...
T Consensus 12 ~~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~---~~i~~~~~ 88 (187)
T PRK08287 12 VPMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC---GNIDIIPG 88 (187)
T ss_pred CCCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC---CCeEEEec
Confidence 3334443 3445567766678899999999999999999988778999999999999999998876542 36888888
Q ss_pred ccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCH
Q 026688 122 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE 201 (235)
Q Consensus 122 d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (235)
|... ++ .++||+|++.....+ ...+++.+.+.|+|||.+++..... -+.
T Consensus 89 d~~~-~~-~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~~~--------------------------~~~ 137 (187)
T PRK08287 89 EAPI-EL-PGKADAIFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFILL--------------------------ENL 137 (187)
T ss_pred Cchh-hc-CcCCCEEEECCCccC---HHHHHHHHHHhcCCCeEEEEEEecH--------------------------hhH
Confidence 8743 33 367999998765443 4568899999999999998865432 234
Q ss_pred HHHHHHHHHcCCceeEE
Q 026688 202 REIEDLCRACGLVDFKC 218 (235)
Q Consensus 202 ~~~~~~l~~~Gf~~~~~ 218 (235)
.++.++++++||+.+..
T Consensus 138 ~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 138 HSALAHLEKCGVSELDC 154 (187)
T ss_pred HHHHHHHHHCCCCcceE
Confidence 67778899999976554
No 44
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.79 E-value=7.3e-18 Score=120.98 Aligned_cols=149 Identities=17% Similarity=0.304 Sum_probs=117.3
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-C
Q 026688 50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-P 127 (235)
Q Consensus 50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~ 127 (235)
.+.|.+++.+ +.+|||+|||.|.++..|.+.. ++...|+|++++.+..|.++ .+.++++|+.+ + .
T Consensus 4 ~~~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~ 70 (193)
T PF07021_consen 4 LQIIAEWIEP--GSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLAD 70 (193)
T ss_pred HHHHHHHcCC--CCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhh
Confidence 4677788877 7899999999999999998863 67999999999998888763 57799999976 3 4
Q ss_pred CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhh-------------cCC
Q 026688 128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ-------------ISG 194 (235)
Q Consensus 128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 194 (235)
+++++||.||++.+++++..|+.+|+++.|+ |...+++.++.. -|..++.-.+.. ..+
T Consensus 71 f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg------~W~~R~~l~~~GrmPvt~~lPy~WYdTP 141 (193)
T PF07021_consen 71 FPDQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFG------HWRNRLQLLLRGRMPVTKALPYEWYDTP 141 (193)
T ss_pred CCCCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChH------HHHHHHHHHhcCCCCCCCCCCCcccCCC
Confidence 7899999999999999999999999999777 446777776642 122222222111 223
Q ss_pred ceeecCHHHHHHHHHHcCCceeEEEe
Q 026688 195 SYTFLSEREIEDLCRACGLVDFKCTR 220 (235)
Q Consensus 195 ~~~~~~~~~~~~~l~~~Gf~~~~~~~ 220 (235)
+.++.|..+++++.++.|+++.+...
T Consensus 142 Nih~~Ti~DFe~lc~~~~i~I~~~~~ 167 (193)
T PF07021_consen 142 NIHLCTIKDFEDLCRELGIRIEERVF 167 (193)
T ss_pred CcccccHHHHHHHHHHCCCEEEEEEE
Confidence 46788999999999999999887764
No 45
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.78 E-value=2.4e-17 Score=123.45 Aligned_cols=155 Identities=20% Similarity=0.142 Sum_probs=109.1
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC---------CCCCCCe
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKENF 116 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---------~~~~~~~ 116 (235)
+...+......+...++.+|||+|||.|..+..+++++. .|+|+|+|+.+++.+.+...... .....++
T Consensus 19 p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (213)
T TIGR03840 19 VNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNI 96 (213)
T ss_pred CCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCce
Confidence 444444444444323468999999999999999999987 99999999999998644221100 0013468
Q ss_pred eEEecccccCCCC-CCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcC
Q 026688 117 LLVRADISRLPFA-SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQIS 193 (235)
Q Consensus 117 ~~~~~d~~~~~~~-~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (235)
++.++|+.+++.. .+.||.|+...+++|++.. ...++.+.++|+|||++++......... ..
T Consensus 97 ~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~---------------~~ 161 (213)
T TIGR03840 97 EIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSE---------------MA 161 (213)
T ss_pred EEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCC---------------CC
Confidence 9999999886532 3679999999888888644 4789999999999999888776543211 01
Q ss_pred CceeecCHHHHHHHHHHcCCceeEE
Q 026688 194 GSYTFLSEREIEDLCRACGLVDFKC 218 (235)
Q Consensus 194 ~~~~~~~~~~~~~~l~~~Gf~~~~~ 218 (235)
+....++++++.+++.. +|.+...
T Consensus 162 gpp~~~~~~eL~~~f~~-~~~i~~~ 185 (213)
T TIGR03840 162 GPPFSVSPAEVEALYGG-HYEIELL 185 (213)
T ss_pred CcCCCCCHHHHHHHhcC-CceEEEE
Confidence 22345889999988863 4544433
No 46
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.78 E-value=2e-17 Score=126.57 Aligned_cols=164 Identities=18% Similarity=0.246 Sum_probs=119.9
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-C
Q 026688 50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F 128 (235)
Q Consensus 50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 128 (235)
++.+.......++.+|||+|||+|.++..+.+.+. +++++|+++.+++.+++++...+ ..+.+...|..+.+ .
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~ 110 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALESG----LKIDYRQTTAEELAAE 110 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHcC----CceEEEecCHHHhhhh
Confidence 45566666566788999999999999999988754 89999999999999998876543 25677777776653 2
Q ss_pred CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchh-HHHHHHhH-h-hcCCceeecCHHHHH
Q 026688 129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF-SRLLRQNM-M-QISGSYTFLSEREIE 205 (235)
Q Consensus 129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~ 205 (235)
..++||+|++..+++|.+++..+++.+.+.|+|||.+++..+........... .......+ . .......+++++++.
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELA 190 (233)
T ss_pred cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHH
Confidence 34789999999999999999999999999999999999887643210000000 00000000 0 111234578999999
Q ss_pred HHHHHcCCceeEEE
Q 026688 206 DLCRACGLVDFKCT 219 (235)
Q Consensus 206 ~~l~~~Gf~~~~~~ 219 (235)
++++++||+++...
T Consensus 191 ~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 191 AWLRQAGLEVQDIT 204 (233)
T ss_pred HHHHHCCCeEeeee
Confidence 99999999987664
No 47
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.78 E-value=2.7e-20 Score=123.40 Aligned_cols=97 Identities=27% Similarity=0.398 Sum_probs=66.0
Q ss_pred EEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--CCCCceeEEEeccccc
Q 026688 66 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAGAAIH 143 (235)
Q Consensus 66 LdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i~~~~~l~ 143 (235)
||+|||+|.++..+++..+..+++++|+|+.+++.+++++.... ..+......+..+.. ...++||+|++..+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 79999999999999999888899999999999999998887754 223333333333221 1225999999999999
Q ss_pred ccCChHHHHHHHHHhccCCcEE
Q 026688 144 CWSSPSTGVAEISRVLRPGGVF 165 (235)
Q Consensus 144 ~~~~~~~~l~~~~~~L~pgG~l 165 (235)
|++++..+++++.++|+|||.|
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999986
No 48
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.78 E-value=3.2e-17 Score=129.20 Aligned_cols=167 Identities=17% Similarity=0.176 Sum_probs=111.4
Q ss_pred CCHHHHHHHHhhcCC---CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCC--CCCCeeEE
Q 026688 45 GPEKEFELMKGYLKP---VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF--PKENFLLV 119 (235)
Q Consensus 45 ~~~~~~~~i~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~--~~~~~~~~ 119 (235)
.+....+.+.+++.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++....... ...++.+.
T Consensus 125 ~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~ 202 (315)
T PLN02585 125 GHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFE 202 (315)
T ss_pred ChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEE
Confidence 345556666666643 2468999999999999999998864 9999999999999999987653110 02357888
Q ss_pred ecccccCCCCCCceeEEEecccccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCC--c
Q 026688 120 RADISRLPFASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISG--S 195 (235)
Q Consensus 120 ~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 195 (235)
..|+... .++||+|+|..+++|+++.. .+++.+.+ +.+||. ++.. .... ....+...+...+..... .
T Consensus 203 ~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~-~p~~--~~~~~l~~~g~~~~g~~~~~r 274 (315)
T PLN02585 203 ANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISF-APKT--LYYDILKRIGELFPGPSKATR 274 (315)
T ss_pred Ecchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEe-CCcc--hHHHHHHHHHhhcCCCCcCce
Confidence 8887653 47899999999999987653 45666665 445544 4433 2111 111222222222222111 1
Q ss_pred eeecCHHHHHHHHHHcCCceeEEEee
Q 026688 196 YTFLSEREIEDLCRACGLVDFKCTRN 221 (235)
Q Consensus 196 ~~~~~~~~~~~~l~~~Gf~~~~~~~~ 221 (235)
..+++.++++++++++||++......
T Consensus 275 ~y~~s~eel~~lL~~AGf~v~~~~~~ 300 (315)
T PLN02585 275 AYLHAEADVERALKKAGWKVARREMT 300 (315)
T ss_pred eeeCCHHHHHHHHHHCCCEEEEEEEe
Confidence 23458999999999999998766543
No 49
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.78 E-value=2.2e-17 Score=125.62 Aligned_cols=151 Identities=18% Similarity=0.261 Sum_probs=115.1
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC-CCceeEEEec
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAG 139 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~i~~~ 139 (235)
.+.+|||+|||+|.++..+++.+. .++++|+++.+++.+++++...+ ..++.+...|+.+.+.. .++||+|++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDP---LLKIEYRCTSVEDLAEKGAKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence 478999999999999999988765 79999999999999999877643 22578888888776533 3789999999
Q ss_pred ccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHH-H-hH-----hhcCCceeecCHHHHHHHHHHcC
Q 026688 140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR-Q-NM-----MQISGSYTFLSEREIEDLCRACG 212 (235)
Q Consensus 140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~-~-~~-----~~~~~~~~~~~~~~~~~~l~~~G 212 (235)
.+++|..++..+++.+.++|+|||.+++....... ......+. . .. ........+++..++.++++++|
T Consensus 120 ~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 195 (224)
T TIGR01983 120 EVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTP----KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAG 195 (224)
T ss_pred hHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCc----hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcC
Confidence 99999999999999999999999999988765321 11111100 0 00 00111235678899999999999
Q ss_pred CceeEEEe
Q 026688 213 LVDFKCTR 220 (235)
Q Consensus 213 f~~~~~~~ 220 (235)
|+++.+..
T Consensus 196 ~~i~~~~~ 203 (224)
T TIGR01983 196 LRVKDVKG 203 (224)
T ss_pred Ceeeeeee
Confidence 99987753
No 50
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.77 E-value=2.6e-17 Score=119.80 Aligned_cols=146 Identities=18% Similarity=0.218 Sum_probs=104.3
Q ss_pred HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCC
Q 026688 52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 131 (235)
Q Consensus 52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 131 (235)
.+.+.++..++.++||+|||.|+.+..|+++|. .|+++|+|+..++.+++.+...+ ..++..+.|+.+..++ +
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~~----l~i~~~~~Dl~~~~~~-~ 93 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEEG----LDIRTRVADLNDFDFP-E 93 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-----TEEEEE-BGCCBS-T-T
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhcC----ceeEEEEecchhcccc-C
Confidence 344455555689999999999999999999988 99999999999999988776654 3589999999887764 6
Q ss_pred ceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHH
Q 026688 132 SIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 209 (235)
Q Consensus 132 ~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 209 (235)
.||+|++..+++|++.. .++++.+...++|||++++....... ....+ ......+.+.++...+.
T Consensus 94 ~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~-d~p~~------------~~~~f~~~~~EL~~~y~ 160 (192)
T PF03848_consen 94 EYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETP-DYPCP------------SPFPFLLKPGELREYYA 160 (192)
T ss_dssp TEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--S-SS--S------------S--S--B-TTHHHHHTT
T ss_pred CcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccC-CCCCC------------CCCCcccCHHHHHHHhC
Confidence 89999998888887644 47899999999999999987664321 11001 11223467788888776
Q ss_pred HcCCceeEEE
Q 026688 210 ACGLVDFKCT 219 (235)
Q Consensus 210 ~~Gf~~~~~~ 219 (235)
||++++..
T Consensus 161 --dW~il~y~ 168 (192)
T PF03848_consen 161 --DWEILKYN 168 (192)
T ss_dssp --TSEEEEEE
T ss_pred --CCeEEEEE
Confidence 68776654
No 51
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.77 E-value=1.9e-18 Score=124.62 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=103.7
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688 49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 128 (235)
Q Consensus 49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 128 (235)
-...++..+...+..+|.|+|||+|..+..++++.|.+.++|+|-|++|++.|+++ .++++|..+|+....
T Consensus 18 Pa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~- 88 (257)
T COG4106 18 PARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWK- 88 (257)
T ss_pred cHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcC-
Confidence 34566777888888999999999999999999999999999999999999999887 457889999998875
Q ss_pred CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688 129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
+....|+++++.+++++++-...+..+...|.|||.|.+..+..
T Consensus 89 p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 89 PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 46789999999999999999999999999999999999988765
No 52
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.77 E-value=7.5e-17 Score=118.38 Aligned_cols=138 Identities=14% Similarity=0.158 Sum_probs=108.8
Q ss_pred HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688 51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 130 (235)
Q Consensus 51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 130 (235)
..+.+.+...++.+|||+|||+|.++..+++.++ +++++|+++.+++.+++++...+ .++++...|..+.. .
T Consensus 9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~--~ 80 (179)
T TIGR00537 9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN----VGLDVVMTDLFKGV--R 80 (179)
T ss_pred HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEccccccc--C
Confidence 3444555445568999999999999999999886 99999999999999999987653 35788888986643 3
Q ss_pred CceeEEEecccccccCC---------------------hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhH
Q 026688 131 SSIDAVHAGAAIHCWSS---------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM 189 (235)
Q Consensus 131 ~~~D~i~~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~ 189 (235)
++||+|+++..+++.++ ...+++++.++|+|||.+++......
T Consensus 81 ~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~---------------- 144 (179)
T TIGR00537 81 GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN---------------- 144 (179)
T ss_pred CcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------------
Confidence 58999999987766543 13579999999999999998775431
Q ss_pred hhcCCceeecCHHHHHHHHHHcCCceeEEEeeC
Q 026688 190 MQISGSYTFLSEREIEDLCRACGLVDFKCTRNR 222 (235)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 222 (235)
...++...+++.||....+...+
T Consensus 145 ----------~~~~~~~~l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 145 ----------GEPDTFDKLDERGFRYEIVAERG 167 (179)
T ss_pred ----------ChHHHHHHHHhCCCeEEEEEEee
Confidence 25678899999999877666544
No 53
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.76 E-value=4.6e-17 Score=119.08 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=85.1
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 140 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~ 140 (235)
++.+|||+|||+|..+..++...+..+|+++|+|+.+++.++++....+ ..+++++++|+.+.+ ..++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~---~~~i~~i~~d~~~~~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG---LNNVEIVNGRAEDFQ-HEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC---CCCeEEEecchhhcc-ccCCccEEEehh
Confidence 3789999999999999999888777899999999999999998887665 346999999998864 357899999865
Q ss_pred cccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 141 AIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
+ .+...+++.+.++|+|||.+++..
T Consensus 118 -~---~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 118 -L---ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -h---hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 3 345577889999999999999864
No 54
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.76 E-value=3.9e-17 Score=124.77 Aligned_cols=162 Identities=19% Similarity=0.215 Sum_probs=110.9
Q ss_pred HHHHHHHhhcCC---CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688 48 KEFELMKGYLKP---VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124 (235)
Q Consensus 48 ~~~~~i~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 124 (235)
...+.+.+++.. .++.+|||+|||+|.++..+++.+. .|+++|+|+.+++.|+++....+. ..++.+...|+.
T Consensus 47 ~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~ 122 (230)
T PRK07580 47 RMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGL--AGNITFEVGDLE 122 (230)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--ccCcEEEEcCch
Confidence 344455555532 4578999999999999999998875 799999999999999998876542 247888888854
Q ss_pred cCCCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhh--cCCceeecC
Q 026688 125 RLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--ISGSYTFLS 200 (235)
Q Consensus 125 ~~~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 200 (235)
. ..++||+|++..+++|++++ ..+++.+.+.+++++.+. ..... ........+...+.. .......++
T Consensus 123 ~---~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~--~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~ 194 (230)
T PRK07580 123 S---LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT--FAPYT---PLLALLHWIGGLFPGPSRTTRIYPHR 194 (230)
T ss_pred h---ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE--ECCcc---HHHHHHHHhccccCCccCCCCccccC
Confidence 3 34789999999999988755 477888888765443332 21111 111111111111111 112245678
Q ss_pred HHHHHHHHHHcCCceeEEEee
Q 026688 201 EREIEDLCRACGLVDFKCTRN 221 (235)
Q Consensus 201 ~~~~~~~l~~~Gf~~~~~~~~ 221 (235)
..++.++++.+||++..+...
T Consensus 195 ~~~~~~~l~~~Gf~~~~~~~~ 215 (230)
T PRK07580 195 EKGIRRALAAAGFKVVRTERI 215 (230)
T ss_pred HHHHHHHHHHCCCceEeeeec
Confidence 899999999999998887643
No 55
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.76 E-value=1.1e-16 Score=123.49 Aligned_cols=132 Identities=20% Similarity=0.296 Sum_probs=102.0
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 140 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~ 140 (235)
++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.|+++...++. ..++.+... +.+||+|+++.
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~--~~~~~~~~~--------~~~fD~Vvani 187 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGV--ELNVYLPQG--------DLKADVIVANI 187 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCC--CceEEEccC--------CCCcCEEEEcC
Confidence 478999999999999998887765 3699999999999999999876542 122222221 12799999875
Q ss_pred cccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEe
Q 026688 141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR 220 (235)
Q Consensus 141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 220 (235)
..+. ...+++++.++|+|||.++++.... ...+++...+++.||++.....
T Consensus 188 ~~~~---~~~l~~~~~~~LkpgG~lilsgi~~--------------------------~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 188 LANP---LLELAPDLARLLKPGGRLILSGILE--------------------------EQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred cHHH---HHHHHHHHHHhcCCCcEEEEEECcH--------------------------hhHHHHHHHHHHCCCEEEEEEE
Confidence 4322 2467899999999999999976542 1346788899999999999988
Q ss_pred eCcEEEEEEecC
Q 026688 221 NRGFVMFTATKP 232 (235)
Q Consensus 221 ~~~~~~~~~~k~ 232 (235)
.+.+..++++|+
T Consensus 239 ~~~W~~~~~~~~ 250 (250)
T PRK00517 239 RGEWVALVGKKK 250 (250)
T ss_pred eCCEEEEEEEeC
Confidence 888888888764
No 56
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.76 E-value=3.1e-18 Score=113.85 Aligned_cols=95 Identities=32% Similarity=0.520 Sum_probs=78.8
Q ss_pred EEEecCCCchHHHHHHHcC---CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec-c
Q 026688 65 IIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG-A 140 (235)
Q Consensus 65 vLdiG~G~G~~~~~l~~~~---~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~-~ 140 (235)
|||+|||+|..+..+.+.. +...++++|+|+.+++.++++....+ .++++.+.|+.+++...++||+|++. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~----~~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG----PKVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT----TTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC----CceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 7999999999999999885 44699999999999999999987642 37899999999988777899999995 4
Q ss_pred cccccCCh--HHHHHHHHHhccCCc
Q 026688 141 AIHCWSSP--STGVAEISRVLRPGG 163 (235)
Q Consensus 141 ~l~~~~~~--~~~l~~~~~~L~pgG 163 (235)
+++|+.+. .++++++.++|+|||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 58987754 589999999999998
No 57
>PLN03075 nicotianamine synthase; Provisional
Probab=99.75 E-value=5e-17 Score=125.60 Aligned_cols=146 Identities=12% Similarity=0.117 Sum_probs=106.9
Q ss_pred CCCeEEEecCCCchHHHH--HHHcCCCceEEEEeCCHHHHHHHHHHhhh-cCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688 61 LGGNIIDASCGSGLFSRI--FAKSGLFSLVVALDYSENMLKQCYEFVQQ-ESNFPKENFLLVRADISRLPFASSSIDAVH 137 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~--l~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 137 (235)
++++|+|||||.|.++.. +++..+.++++++|+++++++.|++.+.. .++ ..+++|..+|+.+.....+.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL--~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL--SKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc--cCCcEEEECchhhcccccCCcCEEE
Confidence 679999999998855443 33467888999999999999999999854 333 4579999999987543347899999
Q ss_pred eccccccc--CChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCce
Q 026688 138 AGAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD 215 (235)
Q Consensus 138 ~~~~l~~~--~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 215 (235)
+. +++++ .++.++++++.+.|+|||.+++-....- +.. -....++++++ ||++
T Consensus 201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~------------r~~------LYp~v~~~~~~------gf~~ 255 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGA------------RAF------LYPVVDPCDLR------GFEV 255 (296)
T ss_pred Ee-cccccccccHHHHHHHHHHhcCCCcEEEEecccch------------Hhh------cCCCCChhhCC------CeEE
Confidence 99 88888 4778999999999999999998763210 000 01112333332 9988
Q ss_pred eEEE-eeC--cEEEEEEecCC
Q 026688 216 FKCT-RNR--GFVMFTATKPS 233 (235)
Q Consensus 216 ~~~~-~~~--~~~~~~~~k~~ 233 (235)
..+. ..+ ...+++++|+.
T Consensus 256 ~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 256 LSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred EEEECCCCCceeeEEEEEeec
Confidence 6664 222 45788888863
No 58
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.75 E-value=3.5e-17 Score=122.11 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=89.2
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc-ccCC--CCCCceeEEE
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLP--FASSSIDAVH 137 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~~D~i~ 137 (235)
+..+|||+|||+|..+..+++..+..+|+++|+|+.+++.+++++...+ ..++.++++|+ ..++ ++.+.||+|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG---LTNLRLLCGDAVEVLLDMFPDGSLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC---CCCEEEEecCHHHHHHHHcCccccceEE
Confidence 4689999999999999999988877899999999999999999887654 35799999999 6555 5567899999
Q ss_pred ecccccccC--------ChHHHHHHHHHhccCCcEEEEEEec
Q 026688 138 AGAAIHCWS--------SPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 138 ~~~~l~~~~--------~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
++....+.. ....+++++.++|+|||.+++....
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 876543221 1357899999999999999987654
No 59
>PRK04266 fibrillarin; Provisional
Probab=99.75 E-value=2.7e-16 Score=118.63 Aligned_cols=148 Identities=12% Similarity=0.130 Sum_probs=104.2
Q ss_pred hcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC----CCCCC
Q 026688 56 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASS 131 (235)
Q Consensus 56 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~ 131 (235)
.+...++.+|||+|||+|.++..+++..+...|+++|+++.|++.+.+++.. ..++.++.+|.... ++. +
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-----~~nv~~i~~D~~~~~~~~~l~-~ 140 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-----RKNIIPILADARKPERYAHVV-E 140 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-----cCCcEEEECCCCCcchhhhcc-c
Confidence 4676778999999999999999999876556899999999999988776554 24688888898642 222 5
Q ss_pred ceeEEEecccccccCCh---HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688 132 SIDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 208 (235)
Q Consensus 132 ~~D~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (235)
.||+|++. +.++ ..+++++.++|||||.+++..+......... +.+ . .++..+++
T Consensus 141 ~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~---------------~~~-~-~~~~~~~l 198 (226)
T PRK04266 141 KVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKD---------------PKE-I-FKEEIRKL 198 (226)
T ss_pred cCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCC---------------HHH-H-HHHHHHHH
Confidence 69999853 3333 3468999999999999999643211000000 001 1 13445999
Q ss_pred HHcCCceeEEEeeCc----EEEEEEec
Q 026688 209 RACGLVDFKCTRNRG----FVMFTATK 231 (235)
Q Consensus 209 ~~~Gf~~~~~~~~~~----~~~~~~~k 231 (235)
+++||+.++....+. ...+++++
T Consensus 199 ~~aGF~~i~~~~l~p~~~~h~~~v~~~ 225 (226)
T PRK04266 199 EEGGFEILEVVDLEPYHKDHAAVVARK 225 (226)
T ss_pred HHcCCeEEEEEcCCCCcCCeEEEEEEc
Confidence 999999988876543 45666654
No 60
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.74 E-value=6.3e-17 Score=136.11 Aligned_cols=149 Identities=18% Similarity=0.235 Sum_probs=113.6
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc--CC
Q 026688 50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--LP 127 (235)
Q Consensus 50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~~ 127 (235)
...+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.+++.... ..++.+.+.|+.. .+
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~-----~~~i~~~~~d~~~~~~~ 98 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGH-----YKNVKFMCADVTSPDLN 98 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhcc-----CCceEEEEecccccccC
Confidence 35666666665678999999999999999998865 899999999999987653221 3478899999863 46
Q ss_pred CCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHH
Q 026688 128 FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 205 (235)
Q Consensus 128 ~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (235)
++.++||+|++..+++|+++. ..+++++.++|+|||.+++.+...... ... ........+.+..+|.
T Consensus 99 ~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~---~~~--------~~~~~~~~~~~~~~~~ 167 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQS---GDS--------KRKNNPTHYREPRFYT 167 (475)
T ss_pred CCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC---Ccc--------cccCCCCeecChHHHH
Confidence 677899999999999999874 589999999999999999987543210 000 0011233445688999
Q ss_pred HHHHHcCCcee
Q 026688 206 DLCRACGLVDF 216 (235)
Q Consensus 206 ~~l~~~Gf~~~ 216 (235)
+++.++||...
T Consensus 168 ~~f~~~~~~~~ 178 (475)
T PLN02336 168 KVFKECHTRDE 178 (475)
T ss_pred HHHHHheeccC
Confidence 99999998754
No 61
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.7e-16 Score=122.24 Aligned_cols=155 Identities=19% Similarity=0.292 Sum_probs=116.7
Q ss_pred CCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688 43 FPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 122 (235)
Q Consensus 43 ~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d 122 (235)
+|...-.++.+-++.. ++++|||+|||+|.+++..++.+. .+++|+|++|..++.++.++..++... .+.....+
T Consensus 146 HpTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~--~~~~~~~~ 220 (300)
T COG2264 146 HPTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVEL--LVQAKGFL 220 (300)
T ss_pred ChhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCch--hhhccccc
Confidence 3444445666666666 489999999999999999999986 479999999999999999998876421 22333333
Q ss_pred cccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHH
Q 026688 123 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER 202 (235)
Q Consensus 123 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (235)
....+ ..++||+|+++-.-+- ...+...+.+.++|||+++++....+ ..+
T Consensus 221 ~~~~~-~~~~~DvIVANILA~v---l~~La~~~~~~lkpgg~lIlSGIl~~--------------------------q~~ 270 (300)
T COG2264 221 LLEVP-ENGPFDVIVANILAEV---LVELAPDIKRLLKPGGRLILSGILED--------------------------QAE 270 (300)
T ss_pred chhhc-ccCcccEEEehhhHHH---HHHHHHHHHHHcCCCceEEEEeehHh--------------------------HHH
Confidence 33322 2369999998652221 13778899999999999999876532 246
Q ss_pred HHHHHHHHcCCceeEEEeeCcEEEEEEecC
Q 026688 203 EIEDLCRACGLVDFKCTRNRGFVMFTATKP 232 (235)
Q Consensus 203 ~~~~~l~~~Gf~~~~~~~~~~~~~~~~~k~ 232 (235)
.+.+.+.++||+++.+.....+..++++|+
T Consensus 271 ~V~~a~~~~gf~v~~~~~~~eW~~i~~kr~ 300 (300)
T COG2264 271 SVAEAYEQAGFEVVEVLEREEWVAIVGKRK 300 (300)
T ss_pred HHHHHHHhCCCeEeEEEecCCEEEEEEEcC
Confidence 778888999999999988888888888874
No 62
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.74 E-value=1.6e-16 Score=119.37 Aligned_cols=155 Identities=18% Similarity=0.139 Sum_probs=108.0
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC---------CCCCCCe
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKENF 116 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---------~~~~~~~ 116 (235)
+...+......+...++.+|||+|||.|..+..|++++. +|+|+|+|+.+++.+.+...... .....++
T Consensus 22 p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v 99 (218)
T PRK13255 22 VNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEI 99 (218)
T ss_pred CCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCce
Confidence 444444444434444568999999999999999999987 99999999999998753221100 0013468
Q ss_pred eEEecccccCCCC-CCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcC
Q 026688 117 LLVRADISRLPFA-SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQIS 193 (235)
Q Consensus 117 ~~~~~d~~~~~~~-~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (235)
++.++|+.+++.. .+.||.|+...+++|++.. ..+++.+.++|+|||.+++......... ..
T Consensus 100 ~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~---------------~~ 164 (218)
T PRK13255 100 TIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE---------------LA 164 (218)
T ss_pred EEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc---------------CC
Confidence 8999999887432 2589999999999988744 4889999999999997666554432111 01
Q ss_pred CceeecCHHHHHHHHHHcCCceeEE
Q 026688 194 GSYTFLSEREIEDLCRACGLVDFKC 218 (235)
Q Consensus 194 ~~~~~~~~~~~~~~l~~~Gf~~~~~ 218 (235)
+....++.+++.+++.. +|.+...
T Consensus 165 gPp~~~~~~el~~~~~~-~~~i~~~ 188 (218)
T PRK13255 165 GPPFSVSDEEVEALYAG-CFEIELL 188 (218)
T ss_pred CCCCCCCHHHHHHHhcC-CceEEEe
Confidence 22235889999998863 2554443
No 63
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.74 E-value=1.9e-16 Score=117.73 Aligned_cols=152 Identities=17% Similarity=0.246 Sum_probs=107.0
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-C
Q 026688 50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-P 127 (235)
Q Consensus 50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~ 127 (235)
++.+.+.+.. +.+|||+|||+|.++..+++.. ...++|+|+++.+++.++++ ++++...|+.+ . +
T Consensus 4 ~~~i~~~i~~--~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~----------~~~~~~~d~~~~l~~ 70 (194)
T TIGR02081 4 LESILNLIPP--GSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR----------GVNVIQGDLDEGLEA 70 (194)
T ss_pred HHHHHHhcCC--CCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc----------CCeEEEEEhhhcccc
Confidence 4556666653 6799999999999999887654 45789999999999988642 46678888865 3 3
Q ss_pred CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHh--Hh---------hcCCce
Q 026688 128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN--MM---------QISGSY 196 (235)
Q Consensus 128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~--~~---------~~~~~~ 196 (235)
++.++||+|+++.+++|++++..+++++.+.++ .+++..++... ......+... +. ....+.
T Consensus 71 ~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (194)
T TIGR02081 71 FPDKSFDYVILSQTLQATRNPEEILDEMLRVGR---HAIVSFPNFGY----WRVRWSILTKGRMPVTGELPYDWYNTPNI 143 (194)
T ss_pred cCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcCChhH----HHHHHHHHhCCccccCCCCCccccCCCCc
Confidence 556789999999999999999999999887655 44554433211 0000000000 00 011234
Q ss_pred eecCHHHHHHHHHHcCCceeEEEee
Q 026688 197 TFLSEREIEDLCRACGLVDFKCTRN 221 (235)
Q Consensus 197 ~~~~~~~~~~~l~~~Gf~~~~~~~~ 221 (235)
++++.+++.++++++||++++....
T Consensus 144 ~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 144 HFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred ccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 6889999999999999999887643
No 64
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.74 E-value=4.5e-17 Score=117.05 Aligned_cols=142 Identities=17% Similarity=0.154 Sum_probs=100.4
Q ss_pred EEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688 89 VALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 168 (235)
Q Consensus 89 ~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~ 168 (235)
+|+|+|++|++.|+++..........++++.++|+.++|+++++||+|++..++++++++.+++++++++|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998776432211124689999999999988889999999999999999999999999999999999999
Q ss_pred EeccCCCcccchhH-----------HHHHHhHhhc----CCceeecCHHHHHHHHHHcCCceeEEEe--eCcEEEEEEe
Q 026688 169 TYIVDGPFNLIPFS-----------RLLRQNMMQI----SGSYTFLSEREIEDLCRACGLVDFKCTR--NRGFVMFTAT 230 (235)
Q Consensus 169 ~~~~~~~~~~~~~~-----------~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~Gf~~~~~~~--~~~~~~~~~~ 230 (235)
++............ ..+......+ .....+.+++++.++|+++||+.+.... .+...++++-
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 159 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVAM 159 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEee
Confidence 88764311110000 0000000000 0113567999999999999999876653 3344445443
No 65
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.74 E-value=1.5e-16 Score=109.78 Aligned_cols=117 Identities=22% Similarity=0.175 Sum_probs=93.0
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C
Q 026688 48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L 126 (235)
Q Consensus 48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~ 126 (235)
.....+.+.+...++.+|||+|||+|..+..+++..+..+|+++|+++.+++.+++++...+ ..++++...|... .
T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~ 82 (124)
T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG---VSNIVIVEGDAPEAL 82 (124)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC---CCceEEEeccccccC
Confidence 34455666666666789999999999999999998777899999999999999999887654 3468888888764 2
Q ss_pred CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
+...++||.|++.....+ ..++++.+.+.|+|||.+++...
T Consensus 83 ~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 83 EDSLPEPDRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred hhhcCCCCEEEECCcchh---HHHHHHHHHHHcCCCCEEEEEec
Confidence 222368999998765443 35889999999999999998753
No 66
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.74 E-value=5.8e-17 Score=116.59 Aligned_cols=136 Identities=14% Similarity=0.138 Sum_probs=99.9
Q ss_pred hhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCcee
Q 026688 55 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 134 (235)
Q Consensus 55 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 134 (235)
..++...-.++||+|||.|.++..|+.+.. .++++|+++..++.|++++.. .+++++.+.|+.+.. |.+.||
T Consensus 37 aaLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~-----~~~V~~~~~dvp~~~-P~~~FD 108 (201)
T PF05401_consen 37 AALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAG-----LPHVEWIQADVPEFW-PEGRFD 108 (201)
T ss_dssp HHHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-EE
T ss_pred HhcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCC-----CCCeEEEECcCCCCC-CCCCee
Confidence 346666678999999999999999999975 999999999999999999876 458999999997753 578999
Q ss_pred EEEecccccccCCh---HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHc
Q 026688 135 AVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC 211 (235)
Q Consensus 135 ~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 211 (235)
+|++..+++++.+. ..+++.+.+.|+|||.|++..+... ...+ .+ +.+..+.+..+|++.
T Consensus 109 LIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~-------~c~~--------wg--h~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 109 LIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA-------NCRR--------WG--HAAGAETVLEMLQEH 171 (201)
T ss_dssp EEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH-------HHHH--------TT---S--HHHHHHHHHHH
T ss_pred EEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC-------cccc--------cC--cccchHHHHHHHHHH
Confidence 99999999999864 4789999999999999999776421 0111 11 224678888898887
Q ss_pred CCce
Q 026688 212 GLVD 215 (235)
Q Consensus 212 Gf~~ 215 (235)
=-++
T Consensus 172 ~~~~ 175 (201)
T PF05401_consen 172 LTEV 175 (201)
T ss_dssp SEEE
T ss_pred hhhe
Confidence 3333
No 67
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.74 E-value=9.2e-16 Score=114.34 Aligned_cols=118 Identities=17% Similarity=0.209 Sum_probs=92.1
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688 48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 126 (235)
Q Consensus 48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 126 (235)
+.....+..+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.+++++...+. ..++.+...|..+.
T Consensus 27 ~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~--~~~v~~~~~d~~~~ 104 (198)
T PRK00377 27 EIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV--LNNIVLIKGEAPEI 104 (198)
T ss_pred HHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCCeEEEEechhhh
Confidence 33334456677778899999999999999998775 4556999999999999999999877653 34788888888763
Q ss_pred -CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 127 -PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 127 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
+...+.||.|++... ..++..+++.+.++|+|||.+++...
T Consensus 105 l~~~~~~~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 105 LFTINEKFDRIFIGGG---SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred HhhcCCCCCEEEECCC---cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 222368999998542 34567889999999999999987544
No 68
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.73 E-value=2.1e-16 Score=128.32 Aligned_cols=156 Identities=20% Similarity=0.145 Sum_probs=113.1
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688 50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 129 (235)
Q Consensus 50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 129 (235)
.+.+.+.+...++.+|||+|||+|.++..+++.. .++|+|+|+|+.+++.|+++... ..+++...|..+.
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l--- 225 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL--- 225 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---
Confidence 4456666777778999999999999999998764 45999999999999999988742 2477888887654
Q ss_pred CCceeEEEecccccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCc-ccchhHHHHHHhHhhcCCceeecCHHHHHH
Q 026688 130 SSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPF-NLIPFSRLLRQNMMQISGSYTFLSEREIED 206 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (235)
.++||.|++..+++|+.. ...+++++.++|+|||.+++......... ...++..++ ..+.....+..++..
T Consensus 226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~y------ifp~g~lps~~~i~~ 299 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKY------IFPNGCLPSVRQIAQ 299 (383)
T ss_pred CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceee------ecCCCcCCCHHHHHH
Confidence 368999999999999864 36899999999999999999877654211 111111110 011123456777777
Q ss_pred HHHHcCCceeEEEeeC
Q 026688 207 LCRACGLVDFKCTRNR 222 (235)
Q Consensus 207 ~l~~~Gf~~~~~~~~~ 222 (235)
.++ .||.+..+...+
T Consensus 300 ~~~-~~~~v~d~~~~~ 314 (383)
T PRK11705 300 ASE-GLFVMEDWHNFG 314 (383)
T ss_pred HHH-CCcEEEEEecCh
Confidence 655 588877665443
No 69
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.72 E-value=7.2e-16 Score=123.99 Aligned_cols=119 Identities=16% Similarity=0.133 Sum_probs=94.7
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688 50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 129 (235)
Q Consensus 50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 129 (235)
.+.+++.+......+|||+|||+|.++..+++++|..+|+++|+|+.+++.+++++..++.....++++...|.... .+
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~ 295 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE 295 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence 45667777665567999999999999999999999899999999999999999998765421123678888887542 23
Q ss_pred CCceeEEEecccccccC---C--hHHHHHHHHHhccCCcEEEEEE
Q 026688 130 SSSIDAVHAGAAIHCWS---S--PSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~~~---~--~~~~l~~~~~~L~pgG~li~~~ 169 (235)
.++||+|+|+-.+|... + ..++++.+.+.|+|||.++++.
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 46899999987765431 1 2478999999999999999985
No 70
>PRK14968 putative methyltransferase; Provisional
Probab=99.72 E-value=1.4e-15 Score=112.62 Aligned_cols=139 Identities=17% Similarity=0.209 Sum_probs=103.6
Q ss_pred HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688 51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 130 (235)
Q Consensus 51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 130 (235)
..+.+.+...++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++...+.. ..++.+...|+.+. +..
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~~-~~~ 88 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNNIR-NNGVEVIRSDLFEP-FRG 88 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHcCCC-CcceEEEecccccc-ccc
Confidence 444455544567899999999999999999884 59999999999999999988765431 11278888888663 344
Q ss_pred CceeEEEecccccccC---------------------ChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhH
Q 026688 131 SSIDAVHAGAAIHCWS---------------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM 189 (235)
Q Consensus 131 ~~~D~i~~~~~l~~~~---------------------~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~ 189 (235)
..||+|+++..+.... ....+++++.++|+|||.+++.....
T Consensus 89 ~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~----------------- 151 (188)
T PRK14968 89 DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL----------------- 151 (188)
T ss_pred cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc-----------------
Confidence 5899999876543211 12467999999999999998865432
Q ss_pred hhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688 190 MQISGSYTFLSEREIEDLCRACGLVDFKCT 219 (235)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 219 (235)
...+++.+++.++||++..+.
T Consensus 152 ---------~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 152 ---------TGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred ---------CCHHHHHHHHHHCCCeeeeee
Confidence 234678899999999876654
No 71
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.72 E-value=3.1e-16 Score=116.87 Aligned_cols=101 Identities=13% Similarity=0.201 Sum_probs=84.4
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 140 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~ 140 (235)
++.+|||+|||+|..+..+++..+..+++|+|+|+.+++.|+++. .++.+..+|+.+ +++.++||+|++..
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~--------~~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL--------PNINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC--------CCCcEEEeeccC-CCCCCCEEEEEECC
Confidence 467899999999999999988766679999999999999998763 246678888877 77788999999999
Q ss_pred cccccCC--hHHHHHHHHHhccCCcEEEEEEecc
Q 026688 141 AIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 141 ~l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
+++|++. ..++++++.+++ ++.+++.+...
T Consensus 114 vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 114 VLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred hhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 9999863 257888999987 46888877654
No 72
>PRK06922 hypothetical protein; Provisional
Probab=99.72 E-value=1.2e-16 Score=134.25 Aligned_cols=107 Identities=22% Similarity=0.365 Sum_probs=91.6
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--CCCCceeEEEe
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHA 138 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i~~ 138 (235)
++.+|||+|||+|..+..+++..+..+++|+|+|+.|++.|+++.... ..++.+.++|+.+++ ++.++||+|++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----GRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 478999999999999999998888889999999999999999876543 236788889988766 66789999999
Q ss_pred cccccccC-------------ChHHHHHHHHHhccCCcEEEEEEec
Q 026688 139 GAAIHCWS-------------SPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 139 ~~~l~~~~-------------~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
+.++|++. +..++++++.++|||||.+++.+..
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 99888752 3468999999999999999998753
No 73
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.71 E-value=3.1e-15 Score=106.82 Aligned_cols=140 Identities=19% Similarity=0.208 Sum_probs=113.9
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688 47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 126 (235)
Q Consensus 47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 126 (235)
.+.....++.+.+.++..++|||||+|..+..++..+|.++++++|.+++.++..+++....+ .+++.++.+++.+.
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg---~~n~~vv~g~Ap~~ 96 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG---VDNLEVVEGDAPEA 96 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC---CCcEEEEeccchHh
Confidence 344455678888899999999999999999999988999999999999999999999998876 57899999999774
Q ss_pred CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHH
Q 026688 127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 206 (235)
Q Consensus 127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (235)
-....++|.|+.... . +.+.+++.+...|+|||.|++...+.+ +.....+
T Consensus 97 L~~~~~~daiFIGGg-~---~i~~ile~~~~~l~~ggrlV~naitlE--------------------------~~~~a~~ 146 (187)
T COG2242 97 LPDLPSPDAIFIGGG-G---NIEEILEAAWERLKPGGRLVANAITLE--------------------------TLAKALE 146 (187)
T ss_pred hcCCCCCCEEEECCC-C---CHHHHHHHHHHHcCcCCeEEEEeecHH--------------------------HHHHHHH
Confidence 212237999998887 3 456889999999999999999876643 2334567
Q ss_pred HHHHcCC-ceeEEE
Q 026688 207 LCRACGL-VDFKCT 219 (235)
Q Consensus 207 ~l~~~Gf-~~~~~~ 219 (235)
.+++.|+ +++++.
T Consensus 147 ~~~~~g~~ei~~v~ 160 (187)
T COG2242 147 ALEQLGGREIVQVQ 160 (187)
T ss_pred HHHHcCCceEEEEE
Confidence 7788888 665554
No 74
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.71 E-value=5e-16 Score=116.25 Aligned_cols=116 Identities=18% Similarity=0.186 Sum_probs=93.9
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 124 (235)
.......+.+.+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++...+. ..++++..+|..
T Consensus 57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~--~~~v~~~~~d~~ 134 (205)
T PRK13944 57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY--WGVVEVYHGDGK 134 (205)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEEECCcc
Confidence 34556777788877778999999999999999888764 246899999999999999998877643 236889999997
Q ss_pred cCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 125 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
+......+||+|++..++++++ +++.+.|+|||.|++..
T Consensus 135 ~~~~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 135 RGLEKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 6543457899999998887654 46889999999998854
No 75
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.71 E-value=5.6e-16 Score=108.95 Aligned_cols=147 Identities=20% Similarity=0.337 Sum_probs=115.0
Q ss_pred HHHHHHHHhhcC----CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688 47 EKEFELMKGYLK----PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 122 (235)
Q Consensus 47 ~~~~~~i~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d 122 (235)
++..+++..... .....+|||+|||.|.++..|++.+-....+|+|+|+.+++.|+......+. ...|+|.+.|
T Consensus 49 ~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~--~n~I~f~q~D 126 (227)
T KOG1271|consen 49 ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF--SNEIRFQQLD 126 (227)
T ss_pred HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC--CcceeEEEee
Confidence 344555555443 2223499999999999999999987666799999999999999887776653 2349999999
Q ss_pred cccCCCCCCceeEEEecccccccC---C-h----HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCC
Q 026688 123 ISRLPFASSSIDAVHAGAAIHCWS---S-P----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISG 194 (235)
Q Consensus 123 ~~~~~~~~~~~D~i~~~~~l~~~~---~-~----~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (235)
+.+..+..++||+|+--.++..+. + + ...+..+.++|+|||.++|...+
T Consensus 127 I~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN----------------------- 183 (227)
T KOG1271|consen 127 ITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN----------------------- 183 (227)
T ss_pred ccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC-----------------------
Confidence 988666678999999776665432 1 1 35688899999999999998876
Q ss_pred ceeecCHHHHHHHHHHcCCceeEEEeeC
Q 026688 195 SYTFLSEREIEDLCRACGLVDFKCTRNR 222 (235)
Q Consensus 195 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 222 (235)
+|.+|+...++..||+.......+
T Consensus 184 ----~T~dELv~~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 184 ----FTKDELVEEFENFNFEYLSTVPTP 207 (227)
T ss_pred ----ccHHHHHHHHhcCCeEEEEeeccc
Confidence 688999999999999887766544
No 76
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.71 E-value=1.6e-15 Score=121.22 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=93.0
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688 50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 129 (235)
Q Consensus 50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 129 (235)
.+.+++.+......+|||+|||+|.++..++++.+..+++++|+|+.+++.+++++..++. ..++...|.... .
T Consensus 185 t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l----~~~~~~~D~~~~--~ 258 (342)
T PRK09489 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL----EGEVFASNVFSD--I 258 (342)
T ss_pred HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCEEEEcccccc--c
Confidence 3555666665556789999999999999999998888999999999999999998887643 346677777542 2
Q ss_pred CCceeEEEecccccccC-----ChHHHHHHHHHhccCCcEEEEEEe
Q 026688 130 SSSIDAVHAGAAIHCWS-----SPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~~~-----~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
.+.||+|+++..+|+.. ....+++++.+.|+|||.++++..
T Consensus 259 ~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 259 KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 47899999998887632 236889999999999999998764
No 77
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.71 E-value=1.5e-15 Score=117.48 Aligned_cols=144 Identities=21% Similarity=0.238 Sum_probs=110.4
Q ss_pred CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688 44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 123 (235)
Q Consensus 44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 123 (235)
+......+.+.+.+.. .+.+|||+|||+|..+..+++..+...++++|+++.+++.+++++...+. .++++.++|+
T Consensus 71 ~~~~~l~~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~d~ 146 (251)
T TIGR03534 71 PDTEELVEAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL---DNVTFLQSDW 146 (251)
T ss_pred CChHHHHHHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECch
Confidence 4455666777776653 35699999999999999999988778999999999999999998877653 3689999998
Q ss_pred ccCCCCCCceeEEEecccccc------cCC--------------------hHHHHHHHHHhccCCcEEEEEEeccCCCcc
Q 026688 124 SRLPFASSSIDAVHAGAAIHC------WSS--------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFN 177 (235)
Q Consensus 124 ~~~~~~~~~~D~i~~~~~l~~------~~~--------------------~~~~l~~~~~~L~pgG~li~~~~~~~~~~~ 177 (235)
.+ +++.++||+|+++-.+.. +.. ...+++++.++|+|||.+++....
T Consensus 147 ~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~------ 219 (251)
T TIGR03534 147 FE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY------ 219 (251)
T ss_pred hc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc------
Confidence 76 345678999998643221 110 125788999999999999885421
Q ss_pred cchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688 178 LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 219 (235)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 219 (235)
...+++.++++++||+.+.+.
T Consensus 220 ---------------------~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 220 ---------------------DQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred ---------------------cHHHHHHHHHHhCCCCceEEE
Confidence 234678899999999877664
No 78
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.70 E-value=4e-16 Score=121.42 Aligned_cols=145 Identities=22% Similarity=0.360 Sum_probs=108.0
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688 49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 128 (235)
Q Consensus 49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 128 (235)
.++.+...... +.+|||+|||+|.+++..++.+. .+|+++|++|..++.|++++..++. ..++.+ ....+ .
T Consensus 151 cl~~l~~~~~~--g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~--~~~~~v--~~~~~--~ 221 (295)
T PF06325_consen 151 CLELLEKYVKP--GKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGV--EDRIEV--SLSED--L 221 (295)
T ss_dssp HHHHHHHHSST--TSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT---TTCEEE--SCTSC--T
T ss_pred HHHHHHHhccC--CCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCC--CeeEEE--EEecc--c
Confidence 34455455443 68999999999999999999885 4799999999999999999998875 334443 22222 2
Q ss_pred CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHH
Q 026688 129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 208 (235)
Q Consensus 129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (235)
...+||+|+++-...-+ ..+...+.++|+|||+++++....+ ..+++.+.+
T Consensus 222 ~~~~~dlvvANI~~~vL---~~l~~~~~~~l~~~G~lIlSGIl~~--------------------------~~~~v~~a~ 272 (295)
T PF06325_consen 222 VEGKFDLVVANILADVL---LELAPDIASLLKPGGYLILSGILEE--------------------------QEDEVIEAY 272 (295)
T ss_dssp CCS-EEEEEEES-HHHH---HHHHHHCHHHEEEEEEEEEEEEEGG--------------------------GHHHHHHHH
T ss_pred ccccCCEEEECCCHHHH---HHHHHHHHHhhCCCCEEEEccccHH--------------------------HHHHHHHHH
Confidence 34899999987554422 3567789999999999999877542 346777888
Q ss_pred HHcCCceeEEEeeCcEEEEEEecC
Q 026688 209 RACGLVDFKCTRNRGFVMFTATKP 232 (235)
Q Consensus 209 ~~~Gf~~~~~~~~~~~~~~~~~k~ 232 (235)
++ ||++++....+.+..++++|+
T Consensus 273 ~~-g~~~~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 273 KQ-GFELVEEREEGEWVALVFKKK 295 (295)
T ss_dssp HT-TEEEEEEEEETTEEEEEEEE-
T ss_pred HC-CCEEEEEEEECCEEEEEEEeC
Confidence 76 999999999999999888874
No 79
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.70 E-value=2.2e-16 Score=122.33 Aligned_cols=109 Identities=16% Similarity=0.196 Sum_probs=85.4
Q ss_pred CCCeEEEecCCCch----HHHHHHHcCC-----CceEEEEeCCHHHHHHHHHHhhh----cCCC----------------
Q 026688 61 LGGNIIDASCGSGL----FSRIFAKSGL-----FSLVVALDYSENMLKQCYEFVQQ----ESNF---------------- 111 (235)
Q Consensus 61 ~~~~vLdiG~G~G~----~~~~l~~~~~-----~~~v~~~D~s~~~~~~a~~~~~~----~~~~---------------- 111 (235)
++.+|+|+|||+|. +++.+++..+ ..+|+|+|+|+.+++.|++..-. .+..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 4555555433 46899999999999999975310 0000
Q ss_pred ----CCCCeeEEecccccCCCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEE
Q 026688 112 ----PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 112 ----~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~ 169 (235)
...+++|.+.|+.+.+++.++||+|+|..+++|++++ .++++++.++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0136899999999877667899999999999999755 479999999999999999854
No 80
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.70 E-value=5.6e-17 Score=119.08 Aligned_cols=153 Identities=16% Similarity=0.194 Sum_probs=112.2
Q ss_pred CCeEEEecCCCchHHHHHHHcCCC--ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc----CCCCCCceeE
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFASSSIDA 135 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~ 135 (235)
..+|||+|||.|.....+.+-.++ ..++++|.||.+++..+++..-. ..++...+.|+.. .+...+++|+
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----e~~~~afv~Dlt~~~~~~~~~~~svD~ 147 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----ESRVEAFVWDLTSPSLKEPPEEGSVDI 147 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----hhhhcccceeccchhccCCCCcCccce
Confidence 348999999999999999998776 78999999999999998876543 2456667777754 2456789999
Q ss_pred EEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhH-HHHHH--hH-hhcCCceeecCHHHHHHHHH
Q 026688 136 VHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS-RLLRQ--NM-MQISGSYTFLSEREIEDLCR 209 (235)
Q Consensus 136 i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~-~~~~~--~~-~~~~~~~~~~~~~~~~~~l~ 209 (235)
|++.++|..+... ..+++++.++|||||.|++-+...-... ...+. .+... .+ .+......+|+.+++..++.
T Consensus 148 it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dla-qlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~ 226 (264)
T KOG2361|consen 148 ITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLA-QLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFT 226 (264)
T ss_pred EEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHH-HHhccCCceeecceEEccCCceeeeccHHHHHHHHH
Confidence 9999999876533 5889999999999999999887653210 00000 00000 00 11223357899999999999
Q ss_pred HcCCceeEEE
Q 026688 210 ACGLVDFKCT 219 (235)
Q Consensus 210 ~~Gf~~~~~~ 219 (235)
++||..++..
T Consensus 227 ~agf~~~~~~ 236 (264)
T KOG2361|consen 227 KAGFEEVQLE 236 (264)
T ss_pred hcccchhccc
Confidence 9999876654
No 81
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.70 E-value=4.2e-16 Score=115.70 Aligned_cols=108 Identities=18% Similarity=0.164 Sum_probs=88.9
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---CCCCceeEEEe
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVHA 138 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~i~~ 138 (235)
..+|||+|||+|.++..+++..|+..++|+|+++.+++.|++++...+ ..++.++++|+.+.+ ++.+.+|.|++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~---l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG---LKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC---CCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 569999999999999999999998999999999999999999887765 348999999997643 34568999998
Q ss_pred cccccccCCh--------HHHHHHHHHhccCCcEEEEEEecc
Q 026688 139 GAAIHCWSSP--------STGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 139 ~~~l~~~~~~--------~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
+....+.... ..+++++.++|+|||.+++.+...
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 7654433221 468999999999999999877543
No 82
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.69 E-value=4.1e-16 Score=113.31 Aligned_cols=118 Identities=24% Similarity=0.340 Sum_probs=93.9
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688 50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 129 (235)
Q Consensus 50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 129 (235)
.+.+.+.+...+..+|||+|||+|.++..+++..+..+|+++|+++.+++.+++++..++. .++++...|..+.. +
T Consensus 20 t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~---~~v~~~~~d~~~~~-~ 95 (170)
T PF05175_consen 20 TRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL---ENVEVVQSDLFEAL-P 95 (170)
T ss_dssp HHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC---TTEEEEESSTTTTC-C
T ss_pred HHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc---cccccccccccccc-c
Confidence 3455555554467899999999999999999999987899999999999999999988764 23899999987633 3
Q ss_pred CCceeEEEecccccccCC-----hHHHHHHHHHhccCCcEEEEEEec
Q 026688 130 SSSIDAVHAGAAIHCWSS-----PSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
.++||+|+++-.++.-.+ ..++++.+.+.|+|||.+++....
T Consensus 96 ~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 96 DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 689999999977655443 258899999999999999876553
No 83
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.69 E-value=3.8e-15 Score=116.99 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=111.9
Q ss_pred CCCHHHHHHHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688 44 PGPEKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 122 (235)
Q Consensus 44 ~~~~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d 122 (235)
|..+.+.+.+++.+. ..+..+|||+|||+|.++..++...+..+++++|+|+.+++.|++++...+. ..++++..+|
T Consensus 96 ~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~--~~~v~~~~~d 173 (284)
T TIGR00536 96 PETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL--EHRVEFIQSN 173 (284)
T ss_pred CccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECc
Confidence 455667777665543 2223799999999999999999988878999999999999999999877653 3358999999
Q ss_pred cccCCCCCCceeEEEecc-------------cccccC------------ChHHHHHHHHHhccCCcEEEEEEeccCCCcc
Q 026688 123 ISRLPFASSSIDAVHAGA-------------AIHCWS------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFN 177 (235)
Q Consensus 123 ~~~~~~~~~~~D~i~~~~-------------~l~~~~------------~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~ 177 (235)
+.+ +++..+||+|+++- +..|.+ ....++..+.+.|+|||.+++.....
T Consensus 174 ~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~----- 247 (284)
T TIGR00536 174 LFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW----- 247 (284)
T ss_pred hhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-----
Confidence 876 33445899999962 122222 12467889999999999998866432
Q ss_pred cchhHHHHHHhHhhcCCceeecCHHHHHHHHH-HcCCceeEEE--eeCcEEEEEEec
Q 026688 178 LIPFSRLLRQNMMQISGSYTFLSEREIEDLCR-ACGLVDFKCT--RNRGFVMFTATK 231 (235)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gf~~~~~~--~~~~~~~~~~~k 231 (235)
....+.+++. +.||..+.+. ..+..-++++++
T Consensus 248 ----------------------q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~~ 282 (284)
T TIGR00536 248 ----------------------QQKSLKELLRIKFTWYDVENGRDLNGKERVVLGFY 282 (284)
T ss_pred ----------------------HHHHHHHHHHhcCCCceeEEecCCCCCceEEEEEe
Confidence 2345667777 4688765554 233334444443
No 84
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.69 E-value=6.3e-15 Score=115.39 Aligned_cols=146 Identities=18% Similarity=0.130 Sum_probs=106.0
Q ss_pred CHHHHHHHHh-hcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688 46 PEKEFELMKG-YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124 (235)
Q Consensus 46 ~~~~~~~i~~-~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 124 (235)
.+..++..+. ++...++.+|||+|||+|.++..+++..+..+++++|+|+.+++.|++++...+. ..++++.++|+.
T Consensus 105 te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~--~~~i~~~~~D~~ 182 (284)
T TIGR03533 105 IAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL--EDRVTLIQSDLF 182 (284)
T ss_pred hHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchh
Confidence 3444554443 3433345799999999999999999988888999999999999999999887654 347899999986
Q ss_pred cCCCCCCceeEEEecccc-------------cccCC------------hHHHHHHHHHhccCCcEEEEEEeccCCCcccc
Q 026688 125 RLPFASSSIDAVHAGAAI-------------HCWSS------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 179 (235)
Q Consensus 125 ~~~~~~~~~D~i~~~~~l-------------~~~~~------------~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~ 179 (235)
+. ++.++||+|+++--. .|.+. ...+++.+.+.|+|||.+++....
T Consensus 183 ~~-~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-------- 253 (284)
T TIGR03533 183 AA-LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-------- 253 (284)
T ss_pred hc-cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--------
Confidence 42 344689999996211 11110 146788999999999999876532
Q ss_pred hhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeC
Q 026688 180 PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNR 222 (235)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 222 (235)
+.+.+.+++.++||........+
T Consensus 254 --------------------~~~~v~~~~~~~~~~~~~~~~~~ 276 (284)
T TIGR03533 254 --------------------SMEALEEAYPDVPFTWLEFENGG 276 (284)
T ss_pred --------------------CHHHHHHHHHhCCCceeeecCCC
Confidence 23467788888898765554433
No 85
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.69 E-value=2.5e-15 Score=112.90 Aligned_cols=143 Identities=17% Similarity=0.219 Sum_probs=114.3
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688 48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 127 (235)
Q Consensus 48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 127 (235)
...-.+..+.......+|||+|||.|..+..++++.+.++++++|+++.+.+.|++.+..+++ ..++++++.|+.+..
T Consensus 31 ~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l--~~ri~v~~~Di~~~~ 108 (248)
T COG4123 31 TDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL--EERIQVIEADIKEFL 108 (248)
T ss_pred cHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc--hhceeEehhhHHHhh
Confidence 334456667776668999999999999999999997779999999999999999999988776 679999999998863
Q ss_pred --CCCCceeEEEecccccccC------------------ChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHH
Q 026688 128 --FASSSIDAVHAGAAIHCWS------------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ 187 (235)
Q Consensus 128 --~~~~~~D~i~~~~~l~~~~------------------~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~ 187 (235)
....+||+|+|+--++-.. +.+.+++.+.++|||||.+.++-..
T Consensus 109 ~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---------------- 172 (248)
T COG4123 109 KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---------------- 172 (248)
T ss_pred hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH----------------
Confidence 3345799999985443221 1257899999999999999987643
Q ss_pred hHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688 188 NMMQISGSYTFLSEREIEDLCRACGLVDFKCT 219 (235)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 219 (235)
-...++..++.+.+|...++.
T Consensus 173 -----------erl~ei~~~l~~~~~~~k~i~ 193 (248)
T COG4123 173 -----------ERLAEIIELLKSYNLEPKRIQ 193 (248)
T ss_pred -----------HHHHHHHHHHHhcCCCceEEE
Confidence 234678888999888765554
No 86
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.69 E-value=5e-15 Score=119.37 Aligned_cols=156 Identities=13% Similarity=0.035 Sum_probs=111.9
Q ss_pred CCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688 45 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124 (235)
Q Consensus 45 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 124 (235)
..+.+.+.+.+.+. ++.+|||+|||+|.++..+++..+..+++++|+|+.+++.|++++...+ .++++.++|+.
T Consensus 237 eTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g----~rV~fi~gDl~ 310 (423)
T PRK14966 237 ETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG----ARVEFAHGSWF 310 (423)
T ss_pred cHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEcchh
Confidence 34455566655544 3569999999999999999988777899999999999999999987653 37899999986
Q ss_pred cCCC-CCCceeEEEecccccc-----c----------------CC----hHHHHHHHHHhccCCcEEEEEEeccCCCccc
Q 026688 125 RLPF-ASSSIDAVHAGAAIHC-----W----------------SS----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNL 178 (235)
Q Consensus 125 ~~~~-~~~~~D~i~~~~~l~~-----~----------------~~----~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~ 178 (235)
+... ..++||+|+++-.... . .+ ...+++.+.+.|+|||.+++....
T Consensus 311 e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~------- 383 (423)
T PRK14966 311 DTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF------- 383 (423)
T ss_pred ccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-------
Confidence 5432 2357999999643210 0 01 125677778899999998765432
Q ss_pred chhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE--eeCcEEEEEEecCC
Q 026688 179 IPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTATKPS 233 (235)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~--~~~~~~~~~~~k~~ 233 (235)
-..+.+.+++++.||..+.+. ..+..-+++++++.
T Consensus 384 --------------------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~~~ 420 (423)
T PRK14966 384 --------------------DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKYMK 420 (423)
T ss_pred --------------------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEEhh
Confidence 235678899999999876654 34444555566554
No 87
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.68 E-value=1.6e-15 Score=113.96 Aligned_cols=115 Identities=16% Similarity=0.138 Sum_probs=94.3
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 124 (235)
.......+.+.+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++...+ ..++++.++|..
T Consensus 61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g---~~~v~~~~gd~~ 137 (212)
T PRK13942 61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG---YDNVEVIVGDGT 137 (212)
T ss_pred cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcc
Confidence 45667788888888889999999999999999888763 44699999999999999999988765 347999999987
Q ss_pred cCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 125 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
....+...||+|++.....++ ...+.+.|+|||.+++..
T Consensus 138 ~~~~~~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 138 LGYEENAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cCCCcCCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEEE
Confidence 654456789999988766543 346778899999998854
No 88
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.68 E-value=5.3e-15 Score=107.86 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=131.3
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688 47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 126 (235)
Q Consensus 47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 126 (235)
...++.+.+.+... ..+|||||||||..+.++++..|.....-.|+++..+...+..+...+.... ..-...|+...
T Consensus 12 ~pIl~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv--~~P~~lDv~~~ 88 (204)
T PF06080_consen 12 DPILEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNV--RPPLALDVSAP 88 (204)
T ss_pred hHHHHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCccc--CCCeEeecCCC
Confidence 34455566666542 2269999999999999999999988999999999887777777665543111 12244566553
Q ss_pred C--C------CCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCce
Q 026688 127 P--F------ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSY 196 (235)
Q Consensus 127 ~--~------~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (235)
+ . ..+.||+|+|..++|-.+-. +.+++.+.++|+|||.|++-.+.........+....+...+.......
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~ 168 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEW 168 (204)
T ss_pred CCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCc
Confidence 2 2 24589999999999976533 688999999999999999988877665556666777777766666667
Q ss_pred eecCHHHHHHHHHHcCCceeEEEeeC
Q 026688 197 TFLSEREIEDLCRACGLVDFKCTRNR 222 (235)
Q Consensus 197 ~~~~~~~~~~~l~~~Gf~~~~~~~~~ 222 (235)
-..+.+++.++.+++|++..+....+
T Consensus 169 GiRD~e~v~~lA~~~GL~l~~~~~MP 194 (204)
T PF06080_consen 169 GIRDIEDVEALAAAHGLELEEDIDMP 194 (204)
T ss_pred CccCHHHHHHHHHHCCCccCcccccC
Confidence 78899999999999999988887666
No 89
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.68 E-value=1.8e-15 Score=116.31 Aligned_cols=145 Identities=19% Similarity=0.200 Sum_probs=107.8
Q ss_pred HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCC
Q 026688 52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 131 (235)
Q Consensus 52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 131 (235)
.+..........+|+|||+|+|.++..+++++|..+++..|. |.+++.+++ ..++++..+|+. .++|.
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f-~~~P~- 158 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFF-DPLPV- 158 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TT-TCCSS-
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHH-hhhcc-
Confidence 444455555668999999999999999999999999999998 889988888 348999999998 56664
Q ss_pred ceeEEEecccccccCChH--HHHHHHHHhccCC--cEEEEEEeccCCCcccchhH--HHHHHhHhhcCCceeecCHHHHH
Q 026688 132 SIDAVHAGAAIHCWSSPS--TGVAEISRVLRPG--GVFVGTTYIVDGPFNLIPFS--RLLRQNMMQISGSYTFLSEREIE 205 (235)
Q Consensus 132 ~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pg--G~li~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 205 (235)
+|++++.+++|++++.+ ++|+++++.|+|| |.|+|.+...+......... ..+.............+|.++|+
T Consensus 159 -~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~ 237 (241)
T PF00891_consen 159 -ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWE 237 (241)
T ss_dssp -ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHH
T ss_pred -ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHH
Confidence 99999999999998774 8999999999999 99999999876543333222 12222221111125668899999
Q ss_pred HHHH
Q 026688 206 DLCR 209 (235)
Q Consensus 206 ~~l~ 209 (235)
++|.
T Consensus 238 ~ll~ 241 (241)
T PF00891_consen 238 ALLK 241 (241)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8874
No 90
>PRK14967 putative methyltransferase; Provisional
Probab=99.68 E-value=3.5e-15 Score=113.26 Aligned_cols=165 Identities=18% Similarity=0.166 Sum_probs=107.3
Q ss_pred CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688 58 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 137 (235)
Q Consensus 58 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 137 (235)
...++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.+++++...+ .++.+...|+... ++.++||+|+
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~----~~~~~~~~d~~~~-~~~~~fD~Vi 106 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAG----VDVDVRRGDWARA-VEFRPFDVVV 106 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhC----CeeEEEECchhhh-ccCCCeeEEE
Confidence 34557899999999999999988864 3589999999999999999887653 2577888888653 3457899999
Q ss_pred ecccccccCC---------------------hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHh---hcC
Q 026688 138 AGAAIHCWSS---------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM---QIS 193 (235)
Q Consensus 138 ~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 193 (235)
++-.+..... .+.+++++.++|+|||.+++....... ...+...+...-. ...
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~---~~~~~~~l~~~g~~~~~~~ 183 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG---VERTLTRLSEAGLDAEVVA 183 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC---HHHHHHHHHHCCCCeEEEE
Confidence 9743321111 245788899999999999986554321 1122222221100 000
Q ss_pred CceeecCHHH--HHHHHHHcCCceeEEEeeCcEEEEEEecC
Q 026688 194 GSYTFLSERE--IEDLCRACGLVDFKCTRNRGFVMFTATKP 232 (235)
Q Consensus 194 ~~~~~~~~~~--~~~~l~~~Gf~~~~~~~~~~~~~~~~~k~ 232 (235)
.....+.+.. -..++++.||-.. -.......+++++||
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 223 (223)
T PRK14967 184 SQWIPFGPVLRARAAWLERRGLLPP-GQREEELVVIRADKP 223 (223)
T ss_pred eeccCccHHHHHHHHHHHHcCCCCC-CCceEEEEEEEeecC
Confidence 1111222222 3367889999854 233345677888886
No 91
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.67 E-value=1.7e-14 Score=113.11 Aligned_cols=145 Identities=18% Similarity=0.150 Sum_probs=108.2
Q ss_pred CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688 44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 123 (235)
Q Consensus 44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 123 (235)
+..+.+.+.+.......++.+|||+|||+|..+..++...+..+++++|+++.+++.+++++. ... ..++.+...|+
T Consensus 91 ~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~--~~~i~~~~~d~ 167 (275)
T PRK09328 91 PETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL--GARVEFLQGDW 167 (275)
T ss_pred CCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC--CCcEEEEEccc
Confidence 445666777766555566789999999999999999998877899999999999999999887 211 35789999998
Q ss_pred ccCCCCCCceeEEEeccccc--------------cc------------CChHHHHHHHHHhccCCcEEEEEEeccCCCcc
Q 026688 124 SRLPFASSSIDAVHAGAAIH--------------CW------------SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN 177 (235)
Q Consensus 124 ~~~~~~~~~~D~i~~~~~l~--------------~~------------~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~ 177 (235)
.+. ++.++||+|+++-... +- .....+++++.++|+|||.+++....
T Consensus 168 ~~~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~------ 240 (275)
T PRK09328 168 FEP-LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY------ 240 (275)
T ss_pred cCc-CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc------
Confidence 653 2357899999863221 00 01146788888999999999984421
Q ss_pred cchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688 178 LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 219 (235)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 219 (235)
...+++.+++.+.||..+...
T Consensus 241 ---------------------~~~~~~~~~l~~~gf~~v~~~ 261 (275)
T PRK09328 241 ---------------------DQGEAVRALLAAAGFADVETR 261 (275)
T ss_pred ---------------------hHHHHHHHHHHhCCCceeEEe
Confidence 123568889999999866664
No 92
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.66 E-value=1.1e-15 Score=119.40 Aligned_cols=98 Identities=27% Similarity=0.373 Sum_probs=81.5
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCC---ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 137 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 137 (235)
...+|||+|||+|.++..+++..+. ..++|+|+|+.+++.|+++ .+++.+.++|+.++|+++++||+|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~--------~~~~~~~~~d~~~lp~~~~sfD~I~ 156 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR--------YPQVTFCVASSHRLPFADQSLDAII 156 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh--------CCCCeEEEeecccCCCcCCceeEEE
Confidence 4578999999999999999887542 3799999999999999875 3467899999999888888999999
Q ss_pred ecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688 138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
+...- ..++++.++|+|||.+++..+...
T Consensus 157 ~~~~~-------~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 157 RIYAP-------CKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred EecCC-------CCHHHHHhhccCCCEEEEEeCCCc
Confidence 86531 236889999999999999887653
No 93
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.66 E-value=1.6e-14 Score=114.20 Aligned_cols=148 Identities=16% Similarity=0.081 Sum_probs=104.8
Q ss_pred CHHHHHHHHh-hcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688 46 PEKEFELMKG-YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124 (235)
Q Consensus 46 ~~~~~~~i~~-~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 124 (235)
....+...+. ++...+..+|||+|||+|.++..+++..+..+++++|+|+.+++.|++++...+. ..++++.++|+.
T Consensus 117 te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l--~~~i~~~~~D~~ 194 (307)
T PRK11805 117 IAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL--EDRVTLIESDLF 194 (307)
T ss_pred hHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CCcEEEEECchh
Confidence 3444444443 3333223789999999999999999988888999999999999999999887654 346999999986
Q ss_pred cCCCCCCceeEEEecccc-------------cccCC------------hHHHHHHHHHhccCCcEEEEEEeccCCCcccc
Q 026688 125 RLPFASSSIDAVHAGAAI-------------HCWSS------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 179 (235)
Q Consensus 125 ~~~~~~~~~D~i~~~~~l-------------~~~~~------------~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~ 179 (235)
+. ++.++||+|+++--. .|.+. ...+++.+.+.|+|||.+++....
T Consensus 195 ~~-l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~-------- 265 (307)
T PRK11805 195 AA-LPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN-------- 265 (307)
T ss_pred hh-CCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc--------
Confidence 52 234689999987211 11111 136789999999999999985432
Q ss_pred hhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeCcE
Q 026688 180 PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGF 224 (235)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 224 (235)
+..++.+++.+.||........+..
T Consensus 266 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (307)
T PRK11805 266 --------------------SRVHLEEAYPDVPFTWLEFENGGDG 290 (307)
T ss_pred --------------------CHHHHHHHHhhCCCEEEEecCCCce
Confidence 2234667777778776555544433
No 94
>PTZ00146 fibrillarin; Provisional
Probab=99.66 E-value=2.9e-14 Score=109.95 Aligned_cols=162 Identities=12% Similarity=0.073 Sum_probs=104.8
Q ss_pred CHHHHHHHHh---hcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688 46 PEKEFELMKG---YLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121 (235)
Q Consensus 46 ~~~~~~~i~~---~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (235)
...+...|+. .+...++.+|||+|||+|.++.++++.. +...|+++|+++.+++...+.... ..++.++..
T Consensus 114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~ 188 (293)
T PTZ00146 114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIE 188 (293)
T ss_pred ccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEEC
Confidence 4455555643 3445678899999999999999999874 456899999998766555444332 246888888
Q ss_pred ccccC---CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceee
Q 026688 122 DISRL---PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF 198 (235)
Q Consensus 122 d~~~~---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (235)
|+... ......+|+|++... ..++...++.++.++|||||.+++....... +... .....
T Consensus 189 Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~i-d~g~--------------~pe~~ 251 (293)
T PTZ00146 189 DARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKANCI-DSTA--------------KPEVV 251 (293)
T ss_pred CccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEecccc-ccCC--------------CHHHH
Confidence 98542 122357999998764 2233346677899999999999995332211 0000 01111
Q ss_pred cCHHHHHHHHHHcCCceeEEEeeC----cEEEEEEec
Q 026688 199 LSEREIEDLCRACGLVDFKCTRNR----GFVMFTATK 231 (235)
Q Consensus 199 ~~~~~~~~~l~~~Gf~~~~~~~~~----~~~~~~~~k 231 (235)
++ +++ ++|+++||+.++..... ...++++..
T Consensus 252 f~-~ev-~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~ 286 (293)
T PTZ00146 252 FA-SEV-QKLKKEGLKPKEQLTLEPFERDHAVVIGVY 286 (293)
T ss_pred HH-HHH-HHHHHcCCceEEEEecCCccCCcEEEEEEE
Confidence 22 344 78899999987776443 234455443
No 95
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.66 E-value=6e-15 Score=115.96 Aligned_cols=127 Identities=17% Similarity=0.238 Sum_probs=95.1
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 140 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~ 140 (235)
++.+|||+|||+|.++..+++.+. .+|+++|+++.+++.|+++...++. ..++.+...+... ...++||+|+++.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~-~~V~avDid~~al~~a~~n~~~n~~--~~~~~~~~~~~~~--~~~~~fDlVvan~ 233 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGA-AKVVGIDIDPLAVESARKNAELNQV--SDRLQVKLIYLEQ--PIEGKADVIVANI 233 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCC--CcceEEEeccccc--ccCCCceEEEEec
Confidence 478999999999999998887753 5899999999999999999887654 2345666555332 2357899999976
Q ss_pred cccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEe
Q 026688 141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR 220 (235)
Q Consensus 141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 220 (235)
.... ...++.++.++|+|||.++++.... ...+++.+.+++. |+++.+..
T Consensus 234 ~~~~---l~~ll~~~~~~LkpgG~li~sgi~~--------------------------~~~~~v~~~~~~~-f~~~~~~~ 283 (288)
T TIGR00406 234 LAEV---IKELYPQFSRLVKPGGWLILSGILE--------------------------TQAQSVCDAYEQG-FTVVEIRQ 283 (288)
T ss_pred CHHH---HHHHHHHHHHHcCCCcEEEEEeCcH--------------------------hHHHHHHHHHHcc-CceeeEec
Confidence 5432 3478899999999999999977543 1235667777766 87776654
Q ss_pred eC
Q 026688 221 NR 222 (235)
Q Consensus 221 ~~ 222 (235)
.+
T Consensus 284 ~~ 285 (288)
T TIGR00406 284 RE 285 (288)
T ss_pred cC
Confidence 43
No 96
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.66 E-value=3.2e-16 Score=114.17 Aligned_cols=165 Identities=20% Similarity=0.161 Sum_probs=118.3
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-
Q 026688 48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL- 126 (235)
Q Consensus 48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~- 126 (235)
..+..++......+-+++||+|||||-....+...-. .++|+|+|++|++.|.++-. --...++|+...
T Consensus 112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~--------YD~L~~Aea~~Fl 181 (287)
T COG4976 112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGL--------YDTLYVAEAVLFL 181 (287)
T ss_pred HHHHHHHHhccCCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccc--------hHHHHHHHHHHHh
Confidence 3344444555555578999999999999999988765 89999999999999987521 112333444321
Q ss_pred C-CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHH
Q 026688 127 P-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 205 (235)
Q Consensus 127 ~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (235)
+ ...+.||+|+...++.++.+.+.++-.....|+|||.+.++.-....... |.- .++.....+..-++
T Consensus 182 ~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~---f~l--------~ps~RyAH~~~YVr 250 (287)
T COG4976 182 EDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG---FVL--------GPSQRYAHSESYVR 250 (287)
T ss_pred hhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC---eec--------chhhhhccchHHHH
Confidence 1 34578999999999999999999999999999999999998877654321 100 11112234667788
Q ss_pred HHHHHcCCceeEEEeeCc---------EEEEEEecCC
Q 026688 206 DLCRACGLVDFKCTRNRG---------FVMFTATKPS 233 (235)
Q Consensus 206 ~~l~~~Gf~~~~~~~~~~---------~~~~~~~k~~ 233 (235)
.+++..||+++.+...+. -..++++|++
T Consensus 251 ~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~~ 287 (287)
T COG4976 251 ALLAASGLEVIAIEDTTIRRDAGEPVPGILVIARKKA 287 (287)
T ss_pred HHHHhcCceEEEeecccchhhcCCCCCCceEEEecCC
Confidence 999999999988874332 2567777763
No 97
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.66 E-value=4e-15 Score=112.31 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=92.6
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
......+.+.+...++.+|||+|||+|..+..+++... ..+|+++|+++.+++.|++++...+ ..++++.++|...
T Consensus 63 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g---~~~v~~~~~d~~~ 139 (215)
T TIGR00080 63 PHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG---LDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCeEEEECCccc
Confidence 44567788888888889999999999999999988754 4579999999999999999988765 3478999999976
Q ss_pred CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
.......||+|++.....++ ...+.+.|+|||++++..
T Consensus 140 ~~~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 140 GWEPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence 54334689999987665543 356788999999999864
No 98
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.66 E-value=4.4e-15 Score=117.43 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=82.2
Q ss_pred CCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-CCCCCC----cee
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASS----SID 134 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~----~~D 134 (235)
++.+|||+|||+|..+..+++..+ ..+|+++|+|++|++.+++++.... +..++.++++|+.+ .+++.. ...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~--p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY--PQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC--CCceEEEEEEcccchhhhhcccccCCeE
Confidence 367999999999999999998864 4689999999999999999876532 13457778999976 333322 233
Q ss_pred EEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEe
Q 026688 135 AVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 135 ~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~ 170 (235)
++++..++++++.. ..+++++.+.|+|||.+++...
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 44455677777643 4789999999999999997553
No 99
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.66 E-value=7.3e-15 Score=117.72 Aligned_cols=140 Identities=22% Similarity=0.257 Sum_probs=108.9
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
...+...+.......++.+|||+|||+|.++..++..+. .++|+|+++.+++.++.++...+. .++.+.+.|+.+
T Consensus 167 ~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~g~---~~i~~~~~D~~~ 241 (329)
T TIGR01177 167 DPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHYGI---EDFFVKRGDATK 241 (329)
T ss_pred CHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHhCC---CCCeEEecchhc
Confidence 345666677766767788999999999999988777654 999999999999999999887663 347899999998
Q ss_pred CCCCCCceeEEEecccccc--------cCC-hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCce
Q 026688 126 LPFASSSIDAVHAGAAIHC--------WSS-PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSY 196 (235)
Q Consensus 126 ~~~~~~~~D~i~~~~~l~~--------~~~-~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (235)
++.+.++||+|+++..+.. ..+ ..++++++.++|+|||++++..+..
T Consensus 242 l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~------------------------ 297 (329)
T TIGR01177 242 LPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR------------------------ 297 (329)
T ss_pred CCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC------------------------
Confidence 8877789999999743211 101 2578999999999999999876543
Q ss_pred eecCHHHHHHHHHHcCCceeEEEe
Q 026688 197 TFLSEREIEDLCRACGLVDFKCTR 220 (235)
Q Consensus 197 ~~~~~~~~~~~l~~~Gf~~~~~~~ 220 (235)
.++...++++|| ++....
T Consensus 298 -----~~~~~~~~~~g~-i~~~~~ 315 (329)
T TIGR01177 298 -----IDLESLAEDAFR-VVKRFE 315 (329)
T ss_pred -----CCHHHHHhhcCc-chheee
Confidence 245577889999 766553
No 100
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.65 E-value=2.9e-14 Score=108.19 Aligned_cols=168 Identities=14% Similarity=0.106 Sum_probs=129.8
Q ss_pred CCCCCeEEEecCCCchHHHHHHHcCCC--ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-C--CCCce
Q 026688 59 PVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F--ASSSI 133 (235)
Q Consensus 59 ~~~~~~vLdiG~G~G~~~~~l~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~--~~~~~ 133 (235)
...+.+||||.||.|.+........+. .++...|+|+..++..++.++..++ ..-++|.++|+.+.. + -...+
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL--~~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL--EDIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC--ccceEEEecCCCCHhHhhccCCCC
Confidence 345789999999999999998888775 6899999999999999999999885 334599999997632 1 23567
Q ss_pred eEEEecccccccCChH---HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHH-HHHhHhhcCCceeecCHHHHHHHHH
Q 026688 134 DAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL-LRQNMMQISGSYTFLSEREIEDLCR 209 (235)
Q Consensus 134 D~i~~~~~l~~~~~~~---~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 209 (235)
++++.+..++.++|.+ ..+..+.+++.|||+++.+... +++...+..+ +..+.......++..|..|+.++++
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQP---wHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~ 287 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQP---WHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVE 287 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCC---CCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHH
Confidence 9999999999999864 6788999999999999976532 2233333222 2222222345688899999999999
Q ss_pred HcCCceeEE--EeeCcEEEEEEec
Q 026688 210 ACGLVDFKC--TRNRGFVMFTATK 231 (235)
Q Consensus 210 ~~Gf~~~~~--~~~~~~~~~~~~k 231 (235)
.+||+.+.. ...+-|++.+|+|
T Consensus 288 ~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 288 AAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HcCCchhhheeccCCceEEEeecC
Confidence 999976444 5777888888875
No 101
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.64 E-value=4.9e-15 Score=108.52 Aligned_cols=148 Identities=16% Similarity=0.202 Sum_probs=105.3
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 140 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~ 140 (235)
...+.||.|+|-|+.+..++-.. ..+|..+|+.+..++.|++.+.... ..-.++++..+.+..++..+||+|++.+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~---~~v~~~~~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDN---PRVGEFYCVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGG---CCEEEEEES-GGG----TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccC---CCcceEEecCHhhccCCCCcEeEEEehH
Confidence 35899999999999999775543 3499999999999999998876521 2346788888888755557999999999
Q ss_pred cccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEE
Q 026688 141 AIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 218 (235)
Q Consensus 141 ~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 218 (235)
++.|++|.+ .+|++|+..|+|+|.|++-+......... .......-..+.+.++++++++|+++++.
T Consensus 131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~-----------~D~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDE-----------FDEEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEE-----------EETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred hhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcc-----------cCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 999999875 89999999999999999988765432100 01112344567899999999999999988
Q ss_pred EeeCc
Q 026688 219 TRNRG 223 (235)
Q Consensus 219 ~~~~~ 223 (235)
..+..
T Consensus 200 ~~Q~~ 204 (218)
T PF05891_consen 200 EKQKG 204 (218)
T ss_dssp EE-TT
T ss_pred ccccC
Confidence 76554
No 102
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.64 E-value=1e-14 Score=109.22 Aligned_cols=99 Identities=20% Similarity=0.219 Sum_probs=78.0
Q ss_pred CCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------CCC
Q 026688 60 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FAS 130 (235)
Q Consensus 60 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~ 130 (235)
.++.+|||+|||+|.++..+++.. +...|+++|+++ + . . ..++.++++|+...+ +..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~--~---~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------D--P---IVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------c--C---CCCcEEEecCCCChHHHHHHHHHhCC
Confidence 457899999999999999998874 456999999988 1 0 1 346889999998742 456
Q ss_pred CceeEEEecccccccCCh-----------HHHHHHHHHhccCCcEEEEEEecc
Q 026688 131 SSIDAVHAGAAIHCWSSP-----------STGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 131 ~~~D~i~~~~~l~~~~~~-----------~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
++||+|++..+.++..++ ..+++.+.++|+|||.+++..+..
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 789999998766554332 357899999999999999977654
No 103
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.64 E-value=7.3e-15 Score=117.75 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=95.3
Q ss_pred HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--CCC
Q 026688 52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFA 129 (235)
Q Consensus 52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~ 129 (235)
.+.+.+.......+||||||+|.++..+++..|+..++|+|+++.+++.+.+++...+ ..++.++.+|+..+ .++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g---L~NV~~i~~DA~~ll~~~~ 189 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN---LKNLLIINYDARLLLELLP 189 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHhhhhCC
Confidence 4455555555679999999999999999999999999999999999999999988765 35799999998653 466
Q ss_pred CCceeEEEecccccccCCh------HHHHHHHHHhccCCcEEEEEEecc
Q 026688 130 SSSIDAVHAGAAIHCWSSP------STGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~~~~~------~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
++++|.|+++....+.... ..+++++.++|+|||.+.+.+-..
T Consensus 190 ~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 190 SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 7899999976544332222 478999999999999999977554
No 104
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=6e-14 Score=107.67 Aligned_cols=116 Identities=20% Similarity=0.314 Sum_probs=95.7
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688 50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 129 (235)
Q Consensus 50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 129 (235)
.+.+++.+......+|||+|||.|.++..+++..|..+++-+|++...++.+++++..++. .+..+...|..+.. .
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~---~~~~v~~s~~~~~v-~ 222 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV---ENTEVWASNLYEPV-E 222 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC---CccEEEEecccccc-c
Confidence 4567777777767799999999999999999999999999999999999999999998753 33356666665532 2
Q ss_pred CCceeEEEecccccccCCh-----HHHHHHHHHhccCCcEEEEEEe
Q 026688 130 SSSIDAVHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~~~~~-----~~~l~~~~~~L~pgG~li~~~~ 170 (235)
++||+|+|+--+|.-.+. ++++....+.|++||.|.++..
T Consensus 223 -~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 223 -GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred -ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 499999999888754332 3889999999999999998875
No 105
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.63 E-value=2.1e-15 Score=109.27 Aligned_cols=175 Identities=22% Similarity=0.292 Sum_probs=113.0
Q ss_pred cccccccChhhhhh-cccccccccccceecccccCCCCCCHHHHHHHHhhcCCCC-CCeEEEecCCCchHHHHHHHcCCC
Q 026688 8 KDYGELMSPATEFF-RMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLF 85 (235)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~vLdiG~G~G~~~~~l~~~~~~ 85 (235)
..|.+.+..+.+.| .++.....|+.+++.....+ +....+.+++++...+ ...|.|+|||.+.++..+...
T Consensus 21 ~LYT~~s~~A~~lf~~dP~~F~~YH~Gfr~Qv~~W----P~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~--- 93 (219)
T PF05148_consen 21 QLYTTSSEEALKLFQEDPELFDIYHEGFRQQVKKW----PVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK--- 93 (219)
T ss_dssp HHHHS-HHHHHHHHHH-HHHHHHHHHHHHHHHCTS----SS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S----
T ss_pred hHhcCCHHHHHHHHHhCHHHHHHHHHHHHHHHhcC----CCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC---
Confidence 45666666666666 34445556888877766544 4455667777776554 468999999999999776532
Q ss_pred ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEE
Q 026688 86 SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF 165 (235)
Q Consensus 86 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l 165 (235)
.+|...|+-. .+-.+..+|+...|+++++.|+++++.+|. -.+...+++++.|+|||||.|
T Consensus 94 ~~V~SfDLva------------------~n~~Vtacdia~vPL~~~svDv~VfcLSLM-GTn~~~fi~EA~RvLK~~G~L 154 (219)
T PF05148_consen 94 HKVHSFDLVA------------------PNPRVTACDIANVPLEDESVDVAVFCLSLM-GTNWPDFIREANRVLKPGGIL 154 (219)
T ss_dssp --EEEEESS-------------------SSTTEEES-TTS-S--TT-EEEEEEES----SS-HHHHHHHHHHHEEEEEEE
T ss_pred ceEEEeeccC------------------CCCCEEEecCccCcCCCCceeEEEEEhhhh-CCCcHHHHHHHHheeccCcEE
Confidence 2799999843 123477799999999999999999998887 467789999999999999999
Q ss_pred EEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE-eeCcEEEEEEecC
Q 026688 166 VGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT-RNRGFVMFTATKP 232 (235)
Q Consensus 166 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~-~~~~~~~~~~~k~ 232 (235)
.|.+... ++-+.+.+.+.++..||+..... ....|.++.-+|.
T Consensus 155 ~IAEV~S------------------------Rf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~ 198 (219)
T PF05148_consen 155 KIAEVKS------------------------RFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKI 198 (219)
T ss_dssp EEEEEGG------------------------G-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-
T ss_pred EEEEecc------------------------cCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEc
Confidence 9998753 22366788899999999987765 4446666666554
No 106
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.63 E-value=4.8e-15 Score=101.19 Aligned_cols=106 Identities=23% Similarity=0.361 Sum_probs=86.9
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--CCCCceeEEEec
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAG 139 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i~~~ 139 (235)
+.+|||+|||+|.++..+++.+ ..+++++|+++..++.++.++...+. ..++++.+.|+.+.. ++.++||+|+++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGL--DDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTT--TTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccC--CceEEEEECchhhchhhccCceeEEEEEC
Confidence 3589999999999999999998 56999999999999999999988654 457999999998764 667899999998
Q ss_pred ccccccC-C-------hHHHHHHHHHhccCCcEEEEEEe
Q 026688 140 AAIHCWS-S-------PSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 140 ~~l~~~~-~-------~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
-.+.... . ...+++++.++|+|||.+++..+
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 6654321 1 14789999999999999998765
No 107
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.63 E-value=1.5e-14 Score=108.50 Aligned_cols=157 Identities=19% Similarity=0.241 Sum_probs=108.5
Q ss_pred CCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC---------CCCCCC
Q 026688 45 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKEN 115 (235)
Q Consensus 45 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---------~~~~~~ 115 (235)
.+...+....+.+...++.+||..|||.|.....|++++. .|+|+|+|+..++.+.+...... .....+
T Consensus 21 ~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 21 EPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp TSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred CCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 3455555555556666678999999999999999999986 99999999999999854332100 001246
Q ss_pred eeEEecccccCCCCC-CceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhc
Q 026688 116 FLLVRADISRLPFAS-SSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI 192 (235)
Q Consensus 116 ~~~~~~d~~~~~~~~-~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (235)
+++.++|+.+++... ++||+|+-..+++.++.. .+..+.+.++|+|||.+++.+...+... .
T Consensus 99 i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~---------------~ 163 (218)
T PF05724_consen 99 ITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGE---------------M 163 (218)
T ss_dssp EEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSC---------------S
T ss_pred eEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcC---------------C
Confidence 789999998875332 479999998888877643 5899999999999999655554432111 1
Q ss_pred CCceeecCHHHHHHHHHHcCCceeEEE
Q 026688 193 SGSYTFLSEREIEDLCRACGLVDFKCT 219 (235)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 219 (235)
.+.....+.+++++++. .+|++....
T Consensus 164 ~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 164 EGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp SSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred CCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 13333468899999998 788776554
No 108
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.62 E-value=2.7e-14 Score=106.35 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=90.6
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C
Q 026688 48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L 126 (235)
Q Consensus 48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~ 126 (235)
+....+...+...++.+|||+|||+|.++..+++..+..+|+++|+++.+++.+++++...+ ..++++..+|+.+ .
T Consensus 27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~---~~~v~~~~~d~~~~~ 103 (196)
T PRK07402 27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG---VKNVEVIEGSAPECL 103 (196)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCCeEEEECchHHHH
Confidence 34445677777777899999999999999999887767799999999999999999987655 2468899998864 2
Q ss_pred CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688 127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
+.....+|.+++.. ..+...+++++.+.|+|||.+++....
T Consensus 104 ~~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 104 AQLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred hhCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 21123457665422 234468899999999999999998765
No 109
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.61 E-value=3.7e-14 Score=106.20 Aligned_cols=114 Identities=14% Similarity=0.114 Sum_probs=90.9
Q ss_pred cCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc---------CCCCCCCeeEEecccccCC
Q 026688 57 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------SNFPKENFLLVRADISRLP 127 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~---------~~~~~~~~~~~~~d~~~~~ 127 (235)
+...++.+||+.|||.|..+..|+.++. .|+|+|+|+..++.+.+..... ......++++.++|+.+++
T Consensus 39 l~~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 39 LNINDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 4434568999999999999999999987 8999999999999986632100 0011347899999999875
Q ss_pred CC---CCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEecc
Q 026688 128 FA---SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 128 ~~---~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
.. .+.||+|+-..++++++.. .+..+.+.++|+|||.+++.....
T Consensus 117 ~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 117 KIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred ccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 32 2589999999999998754 488999999999999999988754
No 110
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.4e-14 Score=106.79 Aligned_cols=126 Identities=21% Similarity=0.204 Sum_probs=107.1
Q ss_pred cccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHH-cCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCe
Q 026688 38 FVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 116 (235)
Q Consensus 38 ~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 116 (235)
+.+....-.......|...+...++.+|||.|.|+|.++..|+. .++.++|+.+|+.++..+.|++++...++ ..++
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l--~d~v 148 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL--GDRV 148 (256)
T ss_pred CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc--ccce
Confidence 44444455667788999999999999999999999999999997 46778999999999999999999998765 4458
Q ss_pred eEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688 117 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 117 ~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
.+...|+.+.-.+ +.||+|+ -.+++|..++.++.+.|+|||.+++-.+.
T Consensus 149 ~~~~~Dv~~~~~~-~~vDav~-----LDmp~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 149 TLKLGDVREGIDE-EDVDAVF-----LDLPDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred EEEeccccccccc-cccCEEE-----EcCCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 9999999886544 4899999 45889999999999999999999986654
No 111
>PHA03411 putative methyltransferase; Provisional
Probab=99.61 E-value=6.1e-14 Score=107.03 Aligned_cols=143 Identities=13% Similarity=0.123 Sum_probs=104.1
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe
Q 026688 41 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 120 (235)
Q Consensus 41 ~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 120 (235)
+.|..+...+..+. +......+|||+|||+|.++..++++.+..+|+++|+++.+++.+++++ .++.+.+
T Consensus 46 G~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--------~~v~~v~ 115 (279)
T PHA03411 46 GAFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--------PEAEWIT 115 (279)
T ss_pred eeEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--------cCCEEEE
Confidence 44445666654442 2233467999999999999998888754569999999999999998753 3678899
Q ss_pred cccccCCCCCCceeEEEecccccccCCh--------------------HHHHHHHHHhccCCcEEEEEEeccCCCcccch
Q 026688 121 ADISRLPFASSSIDAVHAGAAIHCWSSP--------------------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 180 (235)
Q Consensus 121 ~d~~~~~~~~~~~D~i~~~~~l~~~~~~--------------------~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~ 180 (235)
.|+.+... .++||+|+++-.+.+.+.. .+++.....+|+|+|.+++.....+
T Consensus 116 ~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~------- 187 (279)
T PHA03411 116 SDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP------- 187 (279)
T ss_pred Cchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc-------
Confidence 99987643 4689999998888775321 2456677888999997776633221
Q ss_pred hHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCc
Q 026688 181 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV 214 (235)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 214 (235)
-...-+++++++++++++||.
T Consensus 188 -------------~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 188 -------------YYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred -------------cccccCCHHHHHHHHHhcCcE
Confidence 112236889999999999996
No 112
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.61 E-value=3.9e-14 Score=106.80 Aligned_cols=114 Identities=17% Similarity=0.126 Sum_probs=92.0
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
.......+.+.+...++.+|||+|||+|..+..+++... +++++|+++.+++.+++++...+ ..++++..+|..+
T Consensus 63 ~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~ 137 (212)
T PRK00312 63 QPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLG---LHNVSVRHGDGWK 137 (212)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCC---CCceEEEECCccc
Confidence 455667777888877889999999999999988887754 89999999999999999988765 3468899999865
Q ss_pred CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
.....+.||+|++...++++ .+.+.+.|+|||.+++...
T Consensus 138 ~~~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 138 GWPAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCCcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 32234789999998766554 4567899999999998765
No 113
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.59 E-value=9.6e-14 Score=116.72 Aligned_cols=128 Identities=13% Similarity=0.063 Sum_probs=96.9
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 141 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~ 141 (235)
+.+|||+|||+|.++..++...+..+++++|+|+.+++.|++++...+. ..++.+..+|+.+. ++.++||+|+++-.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l--~~~v~~~~~D~~~~-~~~~~fDlIvsNPP 215 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV--TDRIQIIHSNWFEN-IEKQKFDFIVSNPP 215 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC--ccceeeeecchhhh-CcCCCccEEEECCC
Confidence 4689999999999999999887778999999999999999999877654 34788999997542 33468999999532
Q ss_pred c--------------cccCC------------hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCc
Q 026688 142 I--------------HCWSS------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS 195 (235)
Q Consensus 142 l--------------~~~~~------------~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (235)
. .|.+. ...+++.+.+.|+|||.+++....
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~------------------------ 271 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF------------------------ 271 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC------------------------
Confidence 1 11110 125677888999999999875321
Q ss_pred eeecCHHHHHHHHHHcCCceeEEE
Q 026688 196 YTFLSEREIEDLCRACGLVDFKCT 219 (235)
Q Consensus 196 ~~~~~~~~~~~~l~~~Gf~~~~~~ 219 (235)
-..+.+.+++.+.||..+.+.
T Consensus 272 ---~q~~~v~~~~~~~g~~~~~~~ 292 (506)
T PRK01544 272 ---KQEEAVTQIFLDHGYNIESVY 292 (506)
T ss_pred ---chHHHHHHHHHhcCCCceEEE
Confidence 234678888889999866554
No 114
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.59 E-value=9.6e-14 Score=105.36 Aligned_cols=154 Identities=18% Similarity=0.288 Sum_probs=113.7
Q ss_pred eecccccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCC
Q 026688 34 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFP 112 (235)
Q Consensus 34 w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 112 (235)
|...+.+.-.-.....+..|...+...|+.+|||.|.|+|.++..+++. +|.++|+..|..++..+.|++++...++
T Consensus 13 ~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-- 90 (247)
T PF08704_consen 13 WTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-- 90 (247)
T ss_dssp HHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC--
T ss_pred HHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC--
Confidence 3333433333346678889999999999999999999999999999975 7788999999999999999999999876
Q ss_pred CCCeeEEecccccCCCC---CCceeEEEecccccccCChHHHHHHHHHhc-cCCcEEEEEEeccCCCcccchhHHHHHHh
Q 026688 113 KENFLLVRADISRLPFA---SSSIDAVHAGAAIHCWSSPSTGVAEISRVL-RPGGVFVGTTYIVDGPFNLIPFSRLLRQN 188 (235)
Q Consensus 113 ~~~~~~~~~d~~~~~~~---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L-~pgG~li~~~~~~~~~~~~~~~~~~~~~~ 188 (235)
..++++...|+.+..+. +..+|.|+ -.+++|..++..+.++| +|||.+.+-.+.. .
T Consensus 91 ~~~v~~~~~Dv~~~g~~~~~~~~~Davf-----LDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~i----------e----- 150 (247)
T PF08704_consen 91 DDNVTVHHRDVCEEGFDEELESDFDAVF-----LDLPDPWEAIPHAKRALKKPGGRICCFSPCI----------E----- 150 (247)
T ss_dssp CTTEEEEES-GGCG--STT-TTSEEEEE-----EESSSGGGGHHHHHHHE-EEEEEEEEEESSH----------H-----
T ss_pred CCCceeEecceecccccccccCcccEEE-----EeCCCHHHHHHHHHHHHhcCCceEEEECCCH----------H-----
Confidence 56899999999764442 36799998 45889999999999999 8999998766543 1
Q ss_pred HhhcCCceeecCHHHHHHHHHHcCCceeEEEe
Q 026688 189 MMQISGSYTFLSEREIEDLCRACGLVDFKCTR 220 (235)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 220 (235)
........|++.||..+++..
T Consensus 151 -----------Qv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 151 -----------QVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp -----------HHHHHHHHHHHTTEEEEEEEE
T ss_pred -----------HHHHHHHHHHHCCCeeeEEEE
Confidence 123455677888998776653
No 115
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=5.4e-13 Score=104.00 Aligned_cols=157 Identities=22% Similarity=0.257 Sum_probs=111.0
Q ss_pred CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688 44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 123 (235)
Q Consensus 44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 123 (235)
+....+.+.+......... +|||+|||+|..+..++...+.+.|+++|+|+..++.|++++..++. .++.++..|.
T Consensus 94 ~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~dl 169 (280)
T COG2890 94 PDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL---VRVLVVQSDL 169 (280)
T ss_pred CchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeeec
Confidence 3344556665533443333 89999999999999999999999999999999999999999988764 4566666676
Q ss_pred ccCCCCCCceeEEEecccc--c---cc-C-----Ch--------------HHHHHHHHHhccCCcEEEEEEeccCCCccc
Q 026688 124 SRLPFASSSIDAVHAGAAI--H---CW-S-----SP--------------STGVAEISRVLRPGGVFVGTTYIVDGPFNL 178 (235)
Q Consensus 124 ~~~~~~~~~~D~i~~~~~l--~---~~-~-----~~--------------~~~l~~~~~~L~pgG~li~~~~~~~~~~~~ 178 (235)
.+ +. .++||+|+++--. . +. + +| ..++..+.+.|+|||.+++....
T Consensus 170 f~-~~-~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~------- 240 (280)
T COG2890 170 FE-PL-RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL------- 240 (280)
T ss_pred cc-cc-CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC-------
Confidence 54 22 2489999997321 1 11 1 11 36788899999999988876542
Q ss_pred chhHHHHHHhHhhcCCceeecCHHHHHHHHHHcC-CceeEEE--eeCcEEEEEEecCC
Q 026688 179 IPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG-LVDFKCT--RNRGFVMFTATKPS 233 (235)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~--~~~~~~~~~~~k~~ 233 (235)
-..+.+.+++.+.| |..+... ..+...++.+++..
T Consensus 241 --------------------~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~~~ 278 (280)
T COG2890 241 --------------------TQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAKLRS 278 (280)
T ss_pred --------------------CcHHHHHHHHHhcCCceEEEEEecCCCceEEEEEEecc
Confidence 23577899999999 6655554 34455556555443
No 116
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.1e-13 Score=101.01 Aligned_cols=114 Identities=20% Similarity=0.179 Sum_probs=97.7
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
.......+.+.+...++.+|||||||+|+.+.-+++... +|+.+|..+...+.|++++...+ ..++.+.++|-..
T Consensus 57 ~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg---~~nV~v~~gDG~~ 131 (209)
T COG2518 57 APHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLG---YENVTVRHGDGSK 131 (209)
T ss_pred CcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcC---CCceEEEECCccc
Confidence 445677888999999999999999999999999999865 99999999999999999999877 4569999999977
Q ss_pred CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
--.+...||.|+.......+| +.+.+.|+|||++++-..
T Consensus 132 G~~~~aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 132 GWPEEAPYDRIIVTAAAPEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCCCcCEEEEeeccCCCC------HHHHHhcccCCEEEEEEc
Confidence 433458899999988877665 347888999999998765
No 117
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.57 E-value=4.9e-13 Score=102.92 Aligned_cols=141 Identities=16% Similarity=0.102 Sum_probs=100.9
Q ss_pred CHHHHHHHHhhcCCC-CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688 46 PEKEFELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 124 (235)
.+.+.+.+...+... .+.+|||+|||+|.++..+++..+..+++++|+|+.+++.+++++..++ .++.++|+.
T Consensus 70 Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~------~~~~~~D~~ 143 (251)
T TIGR03704 70 TEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG------GTVHEGDLY 143 (251)
T ss_pred HHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC------CEEEEeech
Confidence 445566666555432 3458999999999999999988776799999999999999999987542 468888886
Q ss_pred cC-C-CCCCceeEEEeccccc--------------ccC--------C----hHHHHHHHHHhccCCcEEEEEEeccCCCc
Q 026688 125 RL-P-FASSSIDAVHAGAAIH--------------CWS--------S----PSTGVAEISRVLRPGGVFVGTTYIVDGPF 176 (235)
Q Consensus 125 ~~-~-~~~~~~D~i~~~~~l~--------------~~~--------~----~~~~l~~~~~~L~pgG~li~~~~~~~~~~ 176 (235)
+. + ...++||+|+++--.. |.+ + ...+++.+.+.|+|||.+++.....
T Consensus 144 ~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~---- 219 (251)
T TIGR03704 144 DALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER---- 219 (251)
T ss_pred hhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc----
Confidence 52 2 1135799999874321 100 1 1367778889999999999865421
Q ss_pred ccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688 177 NLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 219 (235)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 219 (235)
...++..++++.||......
T Consensus 220 -----------------------~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 220 -----------------------QAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred -----------------------hHHHHHHHHHHCCCCceeeE
Confidence 23567888899999754444
No 118
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.56 E-value=5e-14 Score=104.85 Aligned_cols=117 Identities=19% Similarity=0.203 Sum_probs=91.5
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 124 (235)
.......+++++...++.+|||||||+|+.+..+++. ++...|+++|+++...+.|++++...+ ..++.+.++|..
T Consensus 57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~---~~nv~~~~gdg~ 133 (209)
T PF01135_consen 57 APSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG---IDNVEVVVGDGS 133 (209)
T ss_dssp -HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT---THSEEEEES-GG
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc---cCceeEEEcchh
Confidence 4667788899999999999999999999999999887 455689999999999999999998876 458999999987
Q ss_pred cCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688 125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 125 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
........||.|++......++ ..+.+.|++||+|++....
T Consensus 134 ~g~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 134 EGWPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp GTTGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEESS
T ss_pred hccccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEcc
Confidence 6433457899999988776443 4578889999999986553
No 119
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.54 E-value=1.2e-13 Score=102.62 Aligned_cols=174 Identities=19% Similarity=0.258 Sum_probs=125.6
Q ss_pred cccccccChhhhhhccc-ccccccccceecccccCCCCCCHHHHHHHHhhcCCCC-CCeEEEecCCCchHHHHHHHcCCC
Q 026688 8 KDYGELMSPATEFFRMP-FMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLF 85 (235)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~vLdiG~G~G~~~~~l~~~~~~ 85 (235)
..|...+.-+..+|..+ .....|+.+++.....+ +...++.|++.+...+ ...|.|+|||.+.++. ...
T Consensus 129 qLYt~~s~~A~~lfkedp~afdlYH~gfr~QV~kW----P~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~--~~~--- 199 (325)
T KOG3045|consen 129 QLYTGTSSEAFDLFKEDPTAFDLYHAGFRSQVKKW----PENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS--SER--- 199 (325)
T ss_pred hhccCCcHHHHHHHhcCcHHHHHHHHHHHHHHHhC----CCChHHHHHHHHHhCcCceEEEecccchhhhhh--ccc---
Confidence 35666665555566443 44455777777666544 3344455555554333 5789999999998876 222
Q ss_pred ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEE
Q 026688 86 SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF 165 (235)
Q Consensus 86 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l 165 (235)
-.|...|+-+ .+-+++.+|+.+.|+++++.|+++++.++. -.+...+++++.|+|+|||.+
T Consensus 200 ~kV~SfDL~a------------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG~l 260 (325)
T KOG3045|consen 200 HKVHSFDLVA------------------VNERVIACDMRNVPLEDESVDVAVFCLSLM-GTNLADFIKEANRILKPGGLL 260 (325)
T ss_pred cceeeeeeec------------------CCCceeeccccCCcCccCcccEEEeeHhhh-cccHHHHHHHHHHHhccCceE
Confidence 2799999833 245578899999999999999999988887 467889999999999999999
Q ss_pred EEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE-eeCcEEEEEEecCC
Q 026688 166 VGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT-RNRGFVMFTATKPS 233 (235)
Q Consensus 166 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~-~~~~~~~~~~~k~~ 233 (235)
.|.+... ++-+...+.+.+...||.+.... ....|+++.-+|.+
T Consensus 261 ~IAEv~S------------------------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 261 YIAEVKS------------------------RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKTP 305 (325)
T ss_pred EEEehhh------------------------hcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEecCC
Confidence 9988643 23456778899999999987775 34467777777654
No 120
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.53 E-value=1.5e-13 Score=99.84 Aligned_cols=116 Identities=27% Similarity=0.314 Sum_probs=89.3
Q ss_pred CHHHHHHHHhhcCCCC--CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688 46 PEKEFELMKGYLKPVL--GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 123 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 123 (235)
..+..+..++++.... +.-|||||||+|-.+..+.+.+. .++|+|+|+.|++.|.++.-+ -.+..+|+
T Consensus 33 Q~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e~e--------gdlil~DM 102 (270)
T KOG1541|consen 33 QAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVERELE--------GDLILCDM 102 (270)
T ss_pred hHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhhhh--------cCeeeeec
Confidence 3455566666665443 78999999999999999988886 899999999999999974322 23677787
Q ss_pred -ccCCCCCCceeEEEecccccccC-------Ch----HHHHHHHHHhccCCcEEEEEEec
Q 026688 124 -SRLPFASSSIDAVHAGAAIHCWS-------SP----STGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 124 -~~~~~~~~~~D~i~~~~~l~~~~-------~~----~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
+-+|+..+.||.+|+...+.++= +| ..++..++.+|++|+..++....
T Consensus 103 G~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 103 GEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred CCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 44789899999999887765542 22 25788899999999998886543
No 121
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.52 E-value=5.4e-13 Score=105.59 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=90.5
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 124 (235)
.......+.+.+...++.+|||+|||+|.++..+++... ...|+++|+++.+++.|++++...+ ..++.+..+|..
T Consensus 65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g---~~nV~~i~gD~~ 141 (322)
T PRK13943 65 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG---IENVIFVCGDGY 141 (322)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCChh
Confidence 345566777777777789999999999999999988754 2479999999999999999887765 346888999987
Q ss_pred cCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 125 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
........||+|++...+.+. ...+.+.|+|||.+++..
T Consensus 142 ~~~~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 142 YGVPEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hcccccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence 654444679999987665543 345778999999988854
No 122
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.51 E-value=3.8e-13 Score=111.66 Aligned_cols=124 Identities=22% Similarity=0.250 Sum_probs=97.0
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
......+...+...++.+|||+|||+|..+..+++.. ..++|+++|+++.+++.+++++...+ ..++.+.+.|+.+
T Consensus 238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g---~~~v~~~~~D~~~ 314 (434)
T PRK14901 238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG---LKSIKILAADSRN 314 (434)
T ss_pred CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC---CCeEEEEeCChhh
Confidence 3444555666777778999999999999999998874 34689999999999999999998766 3468999999987
Q ss_pred CC----CCCCceeEEEec------ccccccCC----------------hHHHHHHHHHhccCCcEEEEEEeccC
Q 026688 126 LP----FASSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 126 ~~----~~~~~~D~i~~~------~~l~~~~~----------------~~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
.+ ...++||.|++. .++.+-++ ..+++.++.++|||||.|+.++.+..
T Consensus 315 ~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 315 LLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred cccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 64 335689999974 23333333 24779999999999999999887653
No 123
>PRK04457 spermidine synthase; Provisional
Probab=99.51 E-value=3.2e-13 Score=104.52 Aligned_cols=110 Identities=14% Similarity=0.140 Sum_probs=86.2
Q ss_pred CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-CCCCCceeEEEe
Q 026688 60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHA 138 (235)
Q Consensus 60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~ 138 (235)
..+++|||||||+|.++..+++..|..+++++|+++.+++.|++++...+. ..+++++.+|..+. ....++||+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~--~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN--GERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC--CCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 346899999999999999999988888999999999999999998764322 35899999998653 222368999998
Q ss_pred ccccc-ccC---ChHHHHHHHHHhccCCcEEEEEEec
Q 026688 139 GAAIH-CWS---SPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 139 ~~~l~-~~~---~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
...-. ..+ ....+++++.+.|+|||.+++..+.
T Consensus 143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 63211 111 1258999999999999999997554
No 124
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.50 E-value=4e-13 Score=111.28 Aligned_cols=125 Identities=22% Similarity=0.192 Sum_probs=95.5
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688 47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 126 (235)
Q Consensus 47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 126 (235)
......+...+.+.++.+|||+|||+|..+..+++..+.++++++|+++.+++.+++++...+. ...+.+..+|....
T Consensus 224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~--~~~v~~~~~d~~~~ 301 (426)
T TIGR00563 224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL--TIKAETKDGDGRGP 301 (426)
T ss_pred CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEeccccccc
Confidence 3444566667777788999999999999999999876567999999999999999999987654 12344466666544
Q ss_pred CC--CCCceeEEEec------ccccccCC----------------hHHHHHHHHHhccCCcEEEEEEeccC
Q 026688 127 PF--ASSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 127 ~~--~~~~~D~i~~~------~~l~~~~~----------------~~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
+. +.++||.|++. +++.+.++ ..++|+++.++|+|||.+++++.+..
T Consensus 302 ~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 302 SQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 32 35689999963 23444333 24789999999999999999998764
No 125
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.50 E-value=4.9e-13 Score=88.73 Aligned_cols=101 Identities=27% Similarity=0.406 Sum_probs=83.3
Q ss_pred eEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC-CCCceeEEEecccc
Q 026688 64 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAGAAI 142 (235)
Q Consensus 64 ~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i~~~~~l 142 (235)
+++|+|||.|..+..+++ ....+++++|+++..+..+++...... ..++++...|..+... ..+++|+|++..++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALL---ADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhccc---ccceEEEEcChhhhccccCCceEEEEEccce
Confidence 589999999999999988 345699999999999999885333222 4578899999987643 45789999999999
Q ss_pred cc-cCChHHHHHHHHHhccCCcEEEEE
Q 026688 143 HC-WSSPSTGVAEISRVLRPGGVFVGT 168 (235)
Q Consensus 143 ~~-~~~~~~~l~~~~~~L~pgG~li~~ 168 (235)
++ ......+++.+.+.++|||.+++.
T Consensus 77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 98 666789999999999999999875
No 126
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.49 E-value=8.4e-13 Score=99.09 Aligned_cols=159 Identities=17% Similarity=0.173 Sum_probs=104.3
Q ss_pred CHHHHHHHHhhc-----CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe
Q 026688 46 PEKEFELMKGYL-----KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 120 (235)
Q Consensus 46 ~~~~~~~i~~~~-----~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 120 (235)
+.+..+.++..- ......++||||+|.|..+..++.... +|++.|.|+.|....+++ +.++
T Consensus 74 S~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k----------g~~v-- 139 (265)
T PF05219_consen 74 SEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK----------GFTV-- 139 (265)
T ss_pred cHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC----------CCeE--
Confidence 455555555533 222467899999999999999998876 899999999997666542 3333
Q ss_pred cccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHH----HHHHhHhhcCCce
Q 026688 121 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR----LLRQNMMQISGSY 196 (235)
Q Consensus 121 ~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 196 (235)
.+..+..-...+||+|.|..++....+|..+|+.+++.|+|+|.+++....+-.+ ...... +....+. ..+..
T Consensus 140 l~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~p--yVE~~~g~~~~P~e~l~-~~g~~ 216 (265)
T PF05219_consen 140 LDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRP--YVEFGGGKSNRPSELLP-VKGAT 216 (265)
T ss_pred EehhhhhccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccc--cEEcCCCCCCCchhhcC-CCCCc
Confidence 2333333234689999999999999999999999999999999999876543221 111000 0000000 01110
Q ss_pred eecCHHHHHHHHHHcCCceeEEEee
Q 026688 197 TFLSEREIEDLCRACGLVDFKCTRN 221 (235)
Q Consensus 197 ~~~~~~~~~~~l~~~Gf~~~~~~~~ 221 (235)
..-....+.+.++.+||++....+.
T Consensus 217 ~E~~v~~l~~v~~p~GF~v~~~tr~ 241 (265)
T PF05219_consen 217 FEEQVSSLVNVFEPAGFEVERWTRL 241 (265)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecc
Confidence 0111233447889999998777643
No 127
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.48 E-value=1.6e-12 Score=107.74 Aligned_cols=121 Identities=21% Similarity=0.243 Sum_probs=93.5
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-
Q 026688 49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP- 127 (235)
Q Consensus 49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~- 127 (235)
....+...+...++.+|||+|||+|..+..+++..+...|+++|+++.+++.+++++...+. ++.+.++|+.+.+
T Consensus 232 ~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~----~~~~~~~D~~~~~~ 307 (427)
T PRK10901 232 AAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL----KATVIVGDARDPAQ 307 (427)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEcCcccchh
Confidence 34455566777778999999999999999999987657999999999999999999887643 4678899987643
Q ss_pred -CCCCceeEEEecccc------cc------cCCh----------HHHHHHHHHhccCCcEEEEEEeccC
Q 026688 128 -FASSSIDAVHAGAAI------HC------WSSP----------STGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 128 -~~~~~~D~i~~~~~l------~~------~~~~----------~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
+..++||.|++...+ .+ ...+ .+++..+.++|+|||.+++++.+..
T Consensus 308 ~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 308 WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 234679999964321 11 1111 3689999999999999999987653
No 128
>PRK00811 spermidine synthase; Provisional
Probab=99.46 E-value=8.9e-13 Score=103.27 Aligned_cols=109 Identities=15% Similarity=0.206 Sum_probs=84.3
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC--CCCCCCeeEEecccccC-CCCCCceeEEE
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--NFPKENFLLVRADISRL-PFASSSIDAVH 137 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~d~~~~-~~~~~~~D~i~ 137 (235)
.+++||++|||+|..+..++++....+|+++|+++.+++.|++.+.... ....++++++.+|.... ....++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 3689999999999999999887545689999999999999999886432 11256899999998763 22357899999
Q ss_pred ecccccccCCh----HHHHHHHHHhccCCcEEEEEE
Q 026688 138 AGAAIHCWSSP----STGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 138 ~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~ 169 (235)
+...-...+.. ..+++.+++.|+|||.+++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 86543322221 477899999999999988753
No 129
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.46 E-value=7.9e-12 Score=92.45 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=75.8
Q ss_pred HhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----
Q 026688 54 KGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----- 127 (235)
Q Consensus 54 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 127 (235)
.......++.+|||+|||+|.++..+++.. +..+++++|+++.+ . ..++.+.+.|+.+.+
T Consensus 25 ~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-----~~~i~~~~~d~~~~~~~~~l 90 (188)
T TIGR00438 25 QKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-----IENVDFIRGDFTDEEVLNKI 90 (188)
T ss_pred HHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-----CCCceEEEeeCCChhHHHHH
Confidence 334444568999999999999999888875 44689999999854 1 235778888886532
Q ss_pred ---CCCCceeEEEecccc--------cccC---ChHHHHHHHHHhccCCcEEEEEEec
Q 026688 128 ---FASSSIDAVHAGAAI--------HCWS---SPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 128 ---~~~~~~D~i~~~~~l--------~~~~---~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
++.++||+|++.... .|.. ....+++.+.++|+|||.+++..+.
T Consensus 91 ~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 91 RERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred HHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 345689999986432 1111 1257899999999999999987543
No 130
>PRK01581 speE spermidine synthase; Validated
Probab=99.46 E-value=3.8e-12 Score=100.92 Aligned_cols=150 Identities=18% Similarity=0.113 Sum_probs=101.6
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHH--hhh--cCCCCCCCeeEEecccccC-CCCCCceeE
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQ--ESNFPKENFLLVRADISRL-PFASSSIDA 135 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~--~~~--~~~~~~~~~~~~~~d~~~~-~~~~~~~D~ 135 (235)
.+++||++|||+|..+..+++..+..+|+++|+++.+++.|++. +.. .+....+++++..+|..+. ....+.||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 36899999999999999998876567999999999999999972 211 1111256899999999763 333568999
Q ss_pred EEecccccc---cCC--hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHH
Q 026688 136 VHAGAAIHC---WSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 210 (235)
Q Consensus 136 i~~~~~l~~---~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 210 (235)
|++...-.. ... ...+++.+++.|+|||.+++..... +... .....+.+.+++
T Consensus 230 IIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp--------~~~~--------------~~~~~i~~tL~~ 287 (374)
T PRK01581 230 IIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP--------ADAP--------------LVYWSIGNTIEH 287 (374)
T ss_pred EEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh--------hhhH--------------HHHHHHHHHHHH
Confidence 998742110 000 1468999999999999988753221 1000 001236688889
Q ss_pred cCCceeEEEe----eC-cEEEEEEecC
Q 026688 211 CGLVDFKCTR----NR-GFVMFTATKP 232 (235)
Q Consensus 211 ~Gf~~~~~~~----~~-~~~~~~~~k~ 232 (235)
+|+.+..... ++ .+.+.+|.+.
T Consensus 288 af~~v~~y~t~vPsyg~~WgF~~as~~ 314 (374)
T PRK01581 288 AGLTVKSYHTIVPSFGTDWGFHIAANS 314 (374)
T ss_pred hCCceEEEEEecCCCCCceEEEEEeCC
Confidence 9987655442 23 3666777653
No 131
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.45 E-value=2.1e-12 Score=106.76 Aligned_cols=123 Identities=15% Similarity=0.174 Sum_probs=94.9
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688 49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 127 (235)
Q Consensus 49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 127 (235)
....+...+...++.+|||+|||+|..+.+++... +..+|+++|+++.+++.+++++...+. .++.+...|...++
T Consensus 225 ~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---~~v~~~~~Da~~l~ 301 (431)
T PRK14903 225 SSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---SSIEIKIADAERLT 301 (431)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhhhh
Confidence 33445556677778999999999999999998864 456999999999999999999987653 35889999987754
Q ss_pred -CCCCceeEEEecccc---ccc---CC----------------hHHHHHHHHHhccCCcEEEEEEeccCC
Q 026688 128 -FASSSIDAVHAGAAI---HCW---SS----------------PSTGVAEISRVLRPGGVFVGTTYIVDG 174 (235)
Q Consensus 128 -~~~~~~D~i~~~~~l---~~~---~~----------------~~~~l~~~~~~L~pgG~li~~~~~~~~ 174 (235)
...++||.|++.... ..+ ++ ..++|.++.++|+|||.++.++.+...
T Consensus 302 ~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 302 EYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred hhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 335689999974222 111 11 136788999999999999999988653
No 132
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.44 E-value=8.3e-12 Score=97.37 Aligned_cols=107 Identities=13% Similarity=0.158 Sum_probs=81.4
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC-CCCCCCeeEEecccccC-CCCCCceeEEEec
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHAG 139 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~~ 139 (235)
+++||++|||+|..+..+++..+..+++++|+++.+++.+++.+.... ....+++++...|..+. ....++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 569999999999999999887655689999999999999999875432 11245788888887542 2224689999986
Q ss_pred ccccccCC----hHHHHHHHHHhccCCcEEEEE
Q 026688 140 AAIHCWSS----PSTGVAEISRVLRPGGVFVGT 168 (235)
Q Consensus 140 ~~l~~~~~----~~~~l~~~~~~L~pgG~li~~ 168 (235)
......+. ...+++.+++.|+|||.+++.
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 54322222 247889999999999999986
No 133
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.44 E-value=3.8e-12 Score=92.52 Aligned_cols=109 Identities=10% Similarity=0.124 Sum_probs=82.7
Q ss_pred HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688 51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 130 (235)
Q Consensus 51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 130 (235)
+.+.+.+...++.+|||+|||+|.++..++++. .+++++|+++.+++.+++++.. ..++++..+|+.+.+++.
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~~ 75 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDLPK 75 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCccc
Confidence 456667776677899999999999999999885 4999999999999999988753 347899999999887666
Q ss_pred CceeEEEecccccccCChHHHHHHHHHh--ccCCcEEEEEE
Q 026688 131 SSIDAVHAGAAIHCWSSPSTGVAEISRV--LRPGGVFVGTT 169 (235)
Q Consensus 131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~--L~pgG~li~~~ 169 (235)
.+||.|+++..++ .. ...+.++.+. +.++|.+++..
T Consensus 76 ~~~d~vi~n~Py~-~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 76 LQPYKVVGNLPYN-IS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cCCCEEEECCCcc-cH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 6799999876554 22 2344444433 33667776543
No 134
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.44 E-value=4.7e-13 Score=98.67 Aligned_cols=119 Identities=24% Similarity=0.211 Sum_probs=83.4
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
+......+...... .+.++|+|||+|..++.++.... +|+|+|+|+.||+.++++...... .....+...+..+
T Consensus 20 Ptdw~~~ia~~~~~--h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~--~t~~~ms~~~~v~ 93 (261)
T KOG3010|consen 20 PTDWFKKIASRTEG--HRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYC--HTPSTMSSDEMVD 93 (261)
T ss_pred cHHHHHHHHhhCCC--cceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccc--cCCcccccccccc
Confidence 34455555555544 34999999999988888888765 999999999999999886543211 1123333333333
Q ss_pred CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCc-EEEEEEec
Q 026688 126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG-VFVGTTYI 171 (235)
Q Consensus 126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG-~li~~~~~ 171 (235)
+--.+++.|+|++..++|+++ .+.+.+.++|+||+.| .+.+-..+
T Consensus 94 L~g~e~SVDlI~~Aqa~HWFd-le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 94 LLGGEESVDLITAAQAVHWFD-LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred ccCCCcceeeehhhhhHHhhc-hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 322368999999999999875 4578999999999977 55544433
No 135
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.44 E-value=7e-12 Score=92.48 Aligned_cols=147 Identities=18% Similarity=0.245 Sum_probs=94.9
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC----CCC------------------------
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----NFP------------------------ 112 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~------------------------ 112 (235)
.+..+|||||..|.++..+++.+-...+.|+||++..++.|++++.... ...
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 3689999999999999999998766789999999999999999875311 000
Q ss_pred -----------CCCeeEEecccccCCCCCCceeEEEeccccccc----CC--hHHHHHHHHHhccCCcEEEEEEeccCCC
Q 026688 113 -----------KENFLLVRADISRLPFASSSIDAVHAGAAIHCW----SS--PSTGVAEISRVLRPGGVFVGTTYIVDGP 175 (235)
Q Consensus 113 -----------~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~----~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~ 175 (235)
..+..+...|+.+ .....||+|+|..+--++ .| ...+++++.++|.|||+|++.-...
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~--~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpW--- 212 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLD--MIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPW--- 212 (288)
T ss_pred cccCCcchhcccccEEEecchhhh--hccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCch---
Confidence 0011112222221 234689999997654322 22 2589999999999999999853322
Q ss_pred cccchhHHHHHHhHh-hcCCceeecCHHHHHHHHHHc--CCce
Q 026688 176 FNLIPFSRLLRQNMM-QISGSYTFLSEREIEDLCRAC--GLVD 215 (235)
Q Consensus 176 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~--Gf~~ 215 (235)
..+...-+..-. .......++.++.++.++.+. ||+.
T Consensus 213 ---ksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~ 252 (288)
T KOG2899|consen 213 ---KSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLES 252 (288)
T ss_pred ---HHHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheee
Confidence 112111111101 111224467899999999887 5653
No 136
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.44 E-value=2e-12 Score=100.47 Aligned_cols=118 Identities=19% Similarity=0.140 Sum_probs=90.8
Q ss_pred HHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCC
Q 026688 53 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 131 (235)
Q Consensus 53 i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 131 (235)
....+...++.+|||+|||+|..+..+++... ...|+++|+++.+++.+++++...+. .++.+...|....+...+
T Consensus 63 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~~~ 139 (264)
T TIGR00446 63 PPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV---LNVAVTNFDGRVFGAAVP 139 (264)
T ss_pred HHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEecCCHHHhhhhcc
Confidence 34456667789999999999999999888643 35899999999999999999987653 468899999876554446
Q ss_pred ceeEEEeccc------ccccCC----------------hHHHHHHHHHhccCCcEEEEEEeccC
Q 026688 132 SIDAVHAGAA------IHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 132 ~~D~i~~~~~------l~~~~~----------------~~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
.||.|++.-. +.+-++ ..++|+.+.++|+|||+|+.++.+..
T Consensus 140 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 140 KFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 7999997422 111111 12589999999999999999987754
No 137
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.44 E-value=2.9e-12 Score=99.94 Aligned_cols=150 Identities=12% Similarity=0.110 Sum_probs=110.7
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 141 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~ 141 (235)
-...+|+|+|.|..+..+...+| .+-+++.+...+..+...+. +.+..+.+|..+. .| +-|+|++.++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P--~~daI~mkWi 245 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TP--KGDAIWMKWI 245 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CC--CcCeEEEEee
Confidence 47899999999999999999888 78899998777766666542 2477788888765 33 3479999999
Q ss_pred ccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccch----hHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCce
Q 026688 142 IHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIP----FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD 215 (235)
Q Consensus 142 l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 215 (235)
+||++|.+ ++|++|+..|+|||.|++.+...+....... ........+..........+..+++.++.++||.+
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~ 325 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPV 325 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCce
Confidence 99999885 9999999999999999999985543111111 11111111112223355678999999999999998
Q ss_pred eEEEeeCc
Q 026688 216 FKCTRNRG 223 (235)
Q Consensus 216 ~~~~~~~~ 223 (235)
..+...+.
T Consensus 326 ~~~~~~~~ 333 (342)
T KOG3178|consen 326 CMVALTAY 333 (342)
T ss_pred eEEEeccC
Confidence 88876553
No 138
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.41 E-value=2.2e-12 Score=107.50 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=91.5
Q ss_pred HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC
Q 026688 51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 129 (235)
Q Consensus 51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 129 (235)
......+...++.+|||+|||+|..+..+++.. ...+|+++|+++.+++.+++++...+. .++++.+.|+...+ +
T Consensus 240 ~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~v~~~~~Da~~~~-~ 315 (445)
T PRK14904 240 ALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---TIIETIEGDARSFS-P 315 (445)
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---CeEEEEeCcccccc-c
Confidence 344455666678899999999999998888753 245899999999999999999987653 46899999997764 3
Q ss_pred CCceeEEEecc------cccccC------C----------hHHHHHHHHHhccCCcEEEEEEeccC
Q 026688 130 SSSIDAVHAGA------AIHCWS------S----------PSTGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 130 ~~~~D~i~~~~------~l~~~~------~----------~~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
..+||+|++.. ++..-+ + ...++..+.++|+|||++++++.+..
T Consensus 316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 56899999631 111111 1 12589999999999999999998764
No 139
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.41 E-value=4e-12 Score=105.99 Aligned_cols=119 Identities=24% Similarity=0.244 Sum_probs=92.1
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-
Q 026688 50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP- 127 (235)
Q Consensus 50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~- 127 (235)
...+...+...++.+|||+|||+|..+..+++.. +.++++++|+++.+++.+++++...+. .++++.++|+.+.+
T Consensus 239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~ 315 (444)
T PRK14902 239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNIETKALDARKVHE 315 (444)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCCcccccc
Confidence 3455556666778899999999999999998874 567999999999999999999987653 35899999997753
Q ss_pred -CCCCceeEEEeccc------ccccCC----------------hHHHHHHHHHhccCCcEEEEEEecc
Q 026688 128 -FASSSIDAVHAGAA------IHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 128 -~~~~~~D~i~~~~~------l~~~~~----------------~~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
++ ++||+|++... +.+-++ ...+++.+.++|+|||.++.++...
T Consensus 316 ~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 316 KFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred hhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 33 68999997532 111111 1257999999999999999887665
No 140
>PRK03612 spermidine synthase; Provisional
Probab=99.41 E-value=3.9e-12 Score=107.66 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=82.7
Q ss_pred CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHH--hhhcC--CCCCCCeeEEecccccC-CCCCCcee
Q 026688 60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQES--NFPKENFLLVRADISRL-PFASSSID 134 (235)
Q Consensus 60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~--~~~~~--~~~~~~~~~~~~d~~~~-~~~~~~~D 134 (235)
+++++|||+|||+|..+..++++.+..+++++|+|+++++.++++ +...+ ...+++++++..|..+. ....++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 346899999999999999998764346999999999999999983 32211 11246899999998763 22346899
Q ss_pred EEEecccccccCCh-----HHHHHHHHHhccCCcEEEEEE
Q 026688 135 AVHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 135 ~i~~~~~l~~~~~~-----~~~l~~~~~~L~pgG~li~~~ 169 (235)
+|++.......+.. ..+++.+++.|+|||.+++..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99987544332221 368899999999999998765
No 141
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=99.40 E-value=1.2e-11 Score=90.52 Aligned_cols=147 Identities=12% Similarity=0.170 Sum_probs=110.8
Q ss_pred CHHHHHHHHhhcCCCC----CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688 46 PEKEFELMKGYLKPVL----GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~----~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (235)
+.-+++++.+...... ..++|||||=+......-.. --.|+.||+++. .-.+...
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~---~fdvt~IDLns~------------------~~~I~qq 90 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG---WFDVTRIDLNSQ------------------HPGILQQ 90 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCcccccC---ceeeEEeecCCC------------------CCCceee
Confidence 3445566655543322 36999999976554443222 236999999762 2336778
Q ss_pred ccccCCCC---CCceeEEEecccccccCChH---HHHHHHHHhccCCcE-----EEEEEeccCCCcccchhHHHHHHhHh
Q 026688 122 DISRLPFA---SSSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGV-----FVGTTYIVDGPFNLIPFSRLLRQNMM 190 (235)
Q Consensus 122 d~~~~~~~---~~~~D~i~~~~~l~~~~~~~---~~l~~~~~~L~pgG~-----li~~~~~~~~~~~~~~~~~~~~~~~~ 190 (235)
|+.+.|+| .+.||+|.++.++.+++++. ..++++.+.|+|+|. |+++.+..
T Consensus 91 DFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~------------------ 152 (219)
T PF11968_consen 91 DFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP------------------ 152 (219)
T ss_pred ccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch------------------
Confidence 99887754 57899999999999999984 889999999999999 88887653
Q ss_pred hcCCceeecCHHHHHHHHHHcCCceeEEEeeCcEEEEEEecC
Q 026688 191 QISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKP 232 (235)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~k~ 232 (235)
...+.++++.+.|..+++..||..++.....-.+++.-+|.
T Consensus 153 -Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~~ 193 (219)
T PF11968_consen 153 -CVTNSRYMTEERLREIMESLGFTRVKYKKSKKLAYWLFRKS 193 (219)
T ss_pred -HhhcccccCHHHHHHHHHhCCcEEEEEEecCeEEEEEEeec
Confidence 22456789999999999999999999988877777766654
No 142
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.40 E-value=7e-13 Score=96.95 Aligned_cols=149 Identities=19% Similarity=0.286 Sum_probs=113.1
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 141 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~ 141 (235)
...++||||+-|....++...+ ..+++-+|.|..|++.++..-.. ...+...+.|-+.+++.++++|+|++..+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp-----~i~~~~~v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDP-----SIETSYFVGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCC-----ceEEEEEecchhcccccccchhhhhhhhh
Confidence 4689999999999999999887 46899999999999999863211 23466788899889999999999999999
Q ss_pred ccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHH-HhHh---hcCCc-eeecCHHHHHHHHHHcCCcee
Q 026688 142 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR-QNMM---QISGS-YTFLSEREIEDLCRACGLVDF 216 (235)
Q Consensus 142 l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~-~~~~~~~~~~~~l~~~Gf~~~ 216 (235)
+|+..+....+.+|+..|||+|.++.+....+.. ....-.+. ..+. ...+| ..+....++..+|..+||...
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTL---yELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~ 223 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTL---YELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSML 223 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHHhccccH---HHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccc
Confidence 9999888888999999999999999888776532 21111111 1111 12233 234446899999999999865
Q ss_pred EEE
Q 026688 217 KCT 219 (235)
Q Consensus 217 ~~~ 219 (235)
.+.
T Consensus 224 tvD 226 (325)
T KOG2940|consen 224 TVD 226 (325)
T ss_pred eec
Confidence 443
No 143
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.39 E-value=7.4e-12 Score=95.44 Aligned_cols=117 Identities=11% Similarity=0.087 Sum_probs=88.9
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C
Q 026688 50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P 127 (235)
Q Consensus 50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~ 127 (235)
.+.+..++...++++|||+|||+|..+..++... +.++++++|+++..++.|++++...+. ..++++..+|+.+. +
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl--~~~i~~~~gda~~~L~ 134 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV--DHKINFIQSDALSALD 134 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEccHHHHHH
Confidence 3344444444457899999999999988888764 367999999999999999999988775 45799999999763 1
Q ss_pred -----CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688 128 -----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 128 -----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
.+.++||+|++...- ++....+..+.++|+|||.+++....
T Consensus 135 ~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 135 QLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred HHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 124689999974321 22347789999999999998875543
No 144
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.38 E-value=7.9e-12 Score=92.44 Aligned_cols=105 Identities=20% Similarity=0.286 Sum_probs=82.5
Q ss_pred eEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C--CCCCceeEEEecc
Q 026688 64 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVHAGA 140 (235)
Q Consensus 64 ~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~i~~~~ 140 (235)
.+||||||.|.++..+++..|+..++|+|+....+..+.+++...+ ..|+.++++|+... . ++.+++|.|..++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~---l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG---LKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT---TSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc---ccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 8999999999999999999999999999999999999999888776 57999999999772 2 4468899999654
Q ss_pred cccccCCh--------HHHHHHHHHhccCCcEEEEEEec
Q 026688 141 AIHCWSSP--------STGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 141 ~l~~~~~~--------~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
.--+.... ..++..+.++|+|||.|.+.+-.
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 44333211 37899999999999999987754
No 145
>PLN02366 spermidine synthase
Probab=99.37 E-value=1.2e-11 Score=97.44 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=83.3
Q ss_pred CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC-CCCCCCeeEEecccccC--CCCCCceeEE
Q 026688 60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL--PFASSSIDAV 136 (235)
Q Consensus 60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~--~~~~~~~D~i 136 (235)
..+++||+||||.|..+..++++.+..+|+.+|+++.+++.|++.+...+ ....++++++.+|.... ..+.+.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 34789999999999999999887545689999999999999999886421 11256899999997542 1224689999
Q ss_pred EecccccccCCh----HHHHHHHHHhccCCcEEEEE
Q 026688 137 HAGAAIHCWSSP----STGVAEISRVLRPGGVFVGT 168 (235)
Q Consensus 137 ~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~ 168 (235)
++...-.+.+.. ..+++.+++.|+|||.++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 986544332221 36899999999999998764
No 146
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.36 E-value=7.6e-12 Score=99.48 Aligned_cols=112 Identities=26% Similarity=0.309 Sum_probs=80.1
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCC---C----CCCeeEEecccccCC----CC
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF---P----KENFLLVRADISRLP----FA 129 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---~----~~~~~~~~~d~~~~~----~~ 129 (235)
++.+|||+|||-|..+.-+.+.. -..++|+|++...++.|+++....... . .-...++.+|..... ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 57899999999999888888765 358999999999999999998321100 0 013566777775421 22
Q ss_pred C--CceeEEEecccccccC-Ch---HHHHHHHHHhccCCcEEEEEEeccC
Q 026688 130 S--SSIDAVHAGAAIHCWS-SP---STGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 130 ~--~~~D~i~~~~~l~~~~-~~---~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
. ..||+|-|..++|+.= +. ..+|+.+.+.|+|||+++.+++..+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 3 5999999999998863 32 4789999999999999999988753
No 147
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.36 E-value=1.7e-10 Score=85.37 Aligned_cols=123 Identities=11% Similarity=0.127 Sum_probs=88.0
Q ss_pred CCCHHHHHHHHhhcCC-CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688 44 PGPEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 122 (235)
Q Consensus 44 ~~~~~~~~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d 122 (235)
|......+.+++.+.. ..+.+|||+|||+|.++..++.++. .+|+++|.++.+++.+++++...+ ..++.+.+.|
T Consensus 35 p~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~---~~~v~~~~~D 110 (199)
T PRK10909 35 PTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLK---AGNARVVNTN 110 (199)
T ss_pred cCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhC---CCcEEEEEch
Confidence 4456666777776542 3467999999999999987655553 599999999999999999988765 2368999999
Q ss_pred cccC-CCCCCceeEEEecccccccCChHHHHHHHHH--hccCCcEEEEEEec
Q 026688 123 ISRL-PFASSSIDAVHAGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYI 171 (235)
Q Consensus 123 ~~~~-~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~L~pgG~li~~~~~ 171 (235)
+.+. +.....||+|+++--+.. .-....++.+.. .|+|++.+++....
T Consensus 111 ~~~~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 111 ALSFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HHHHHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 8653 222346999998766431 112345555555 37888888876543
No 148
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.36 E-value=1.9e-11 Score=106.93 Aligned_cols=107 Identities=18% Similarity=0.172 Sum_probs=82.8
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-CCCCCceeEEEecc
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAGA 140 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~~~ 140 (235)
+++|||+|||+|.++..+++.+. .+|+++|+|+.+++.|++++..++.. ..+++++++|+.+. ....++||+|++.-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~ng~~-~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALNGLS-GRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCC-ccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 68999999999999999998753 37999999999999999999887642 14799999998653 11146899999863
Q ss_pred ccc-----------ccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 141 AIH-----------CWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 141 ~l~-----------~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
-.. ...+...++..+.++|+|||.+++...
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 211 011224678889999999999987654
No 149
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.35 E-value=3.4e-11 Score=98.21 Aligned_cols=123 Identities=16% Similarity=0.163 Sum_probs=87.8
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
.++..+.....+.. +++|||+|||+|.++...+..+ ..+|+++|+|+.+++.+++++..++.. ..+++++++|+.+
T Consensus 207 Dqr~~R~~~~~~~~--g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~Ngl~-~~~v~~i~~D~~~ 282 (396)
T PRK15128 207 DQRDSRLATRRYVE--NKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLD-LSKAEFVRDDVFK 282 (396)
T ss_pred hhHHHHHHHHHhcC--CCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CCcEEEEEccHHH
Confidence 34444444444433 6899999999999988766543 358999999999999999999887641 1378999999976
Q ss_pred CC--C--CCCceeEEEecccccccC---------ChHHHHHHHHHhccCCcEEEEEEecc
Q 026688 126 LP--F--ASSSIDAVHAGAAIHCWS---------SPSTGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 126 ~~--~--~~~~~D~i~~~~~l~~~~---------~~~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
.- + ..++||+|+++--...-. +...++..+.++|+|||.++....+.
T Consensus 283 ~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~ 342 (396)
T PRK15128 283 LLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG 342 (396)
T ss_pred HHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 31 1 245799999874432111 12345667889999999999866543
No 150
>PLN02672 methionine S-methyltransferase
Probab=99.35 E-value=5.8e-11 Score=106.36 Aligned_cols=131 Identities=17% Similarity=0.121 Sum_probs=95.2
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCC-------------CCCCeeEEecccccCCC
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF-------------PKENFLLVRADISRLPF 128 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~d~~~~~~ 128 (235)
+.+|||+|||+|..+..+++..+..+++++|+|+.+++.|++++..+++. ...+++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999887789999999999999999998765321 02368999999976431
Q ss_pred C-CCceeEEEecccc--------------cccC------------------Ch------HHHHHHHHHhccCCcEEEEEE
Q 026688 129 A-SSSIDAVHAGAAI--------------HCWS------------------SP------STGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 129 ~-~~~~D~i~~~~~l--------------~~~~------------------~~------~~~l~~~~~~L~pgG~li~~~ 169 (235)
. ..+||+|+++--. .|-+ +. .+++.++.+.|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 1369999997221 1100 01 367788888999999988765
Q ss_pred eccCCCcccchhHHHHHHhHhhcCCceeecCHHHHH-HHHHHcCCceeEEE
Q 026688 170 YIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE-DLCRACGLVDFKCT 219 (235)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gf~~~~~~ 219 (235)
... ..+.+. +++++.||..+.+.
T Consensus 279 G~~---------------------------q~~~v~~~l~~~~gf~~~~~~ 302 (1082)
T PLN02672 279 GGR---------------------------PGQAVCERLFERRGFRITKLW 302 (1082)
T ss_pred Ccc---------------------------HHHHHHHHHHHHCCCCeeEEe
Confidence 432 224566 57777888765554
No 151
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.35 E-value=5.3e-11 Score=99.24 Aligned_cols=114 Identities=20% Similarity=0.321 Sum_probs=85.5
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688 47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 126 (235)
Q Consensus 47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 126 (235)
+.+.+.+.+++...++.+|||+|||+|.++..+++... +|+|+|+|+.+++.|++++...+ ..++++.++|+.+.
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~~---~~~v~~~~~d~~~~ 357 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRNG---LDNVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcC---CCceEEEEeChHHh
Confidence 44556667777766678999999999999999998864 99999999999999999987765 34699999998652
Q ss_pred ----CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 127 ----PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 127 ----~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
++..++||+|+++-.-.- ....++.+.+ ++|++.++++.
T Consensus 358 l~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 358 FTDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEe
Confidence 233467999997432221 1245555555 58888777765
No 152
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.32 E-value=7.3e-11 Score=94.13 Aligned_cols=113 Identities=12% Similarity=0.181 Sum_probs=79.4
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688 49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 128 (235)
Q Consensus 49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 128 (235)
+.+.+.+++...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++++...+. .++++.++|+.+...
T Consensus 161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~~l---~~v~~~~~D~~~~~~ 235 (315)
T PRK03522 161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAELGL---TNVQFQALDSTQFAT 235 (315)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEcCHHHHHH
Confidence 344445555544568999999999999999998764 999999999999999999887653 479999999977532
Q ss_pred -CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 129 -ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 129 -~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
..+.||+|+++-.-. .....+.++...++|++.++++.
T Consensus 236 ~~~~~~D~Vv~dPPr~---G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 236 AQGEVPDLVLVNPPRR---GIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred hcCCCCeEEEECCCCC---CccHHHHHHHHHcCCCeEEEEEC
Confidence 235799999763211 11122333344467766555543
No 153
>PHA03412 putative methyltransferase; Provisional
Probab=99.32 E-value=4.4e-11 Score=89.47 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=83.6
Q ss_pred ccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC---CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCC
Q 026688 39 VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQESNFPKEN 115 (235)
Q Consensus 39 ~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~ 115 (235)
..+.|.-+......+.... ..+.+|||+|||+|.++..++++. +..+|+++|+++.+++.|+++. .+
T Consensus 29 ~~GqFfTP~~iAr~~~i~~--~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------~~ 98 (241)
T PHA03412 29 ELGAFFTPIGLARDFTIDA--CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------PE 98 (241)
T ss_pred cCCccCCCHHHHHHHHHhc--cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------cC
Confidence 3455666777766654322 236799999999999999988753 2468999999999999999763 35
Q ss_pred eeEEecccccCCCCCCceeEEEecccccccC--C----------hHHHHHHHHHhccCCcE
Q 026688 116 FLLVRADISRLPFASSSIDAVHAGAAIHCWS--S----------PSTGVAEISRVLRPGGV 164 (235)
Q Consensus 116 ~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~--~----------~~~~l~~~~~~L~pgG~ 164 (235)
+.+...|+...++ .++||+||++--+.-.. + ...++..+.+++++|+.
T Consensus 99 ~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 99 ATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 7889999976554 46899999985443211 1 23678888887777664
No 154
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.31 E-value=5e-11 Score=89.58 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=88.6
Q ss_pred CeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C--CCCCceeEEEec
Q 026688 63 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVHAG 139 (235)
Q Consensus 63 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~i~~~ 139 (235)
..+||||||.|.++..++++.|+..++|+|+....+..|.+++...++ .|+.+.+.|+..+ + ++.++.|-|..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l---~Nlri~~~DA~~~l~~~~~~~sl~~I~i~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL---KNLRLLCGDAVEVLDYLIPDGSLDKIYIN 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC---CcEEEEcCCHHHHHHhcCCCCCeeEEEEE
Confidence 589999999999999999999999999999999999999999988753 3899999999764 1 344599999965
Q ss_pred ccccccCCh--------HHHHHHHHHhccCCcEEEEEEecc
Q 026688 140 AAIHCWSSP--------STGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 140 ~~l~~~~~~--------~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
+.--+.... ..+++.+.+.|+|||.|.+.+-..
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 554433322 378999999999999999977543
No 155
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.30 E-value=4.6e-11 Score=88.75 Aligned_cols=119 Identities=14% Similarity=0.135 Sum_probs=92.7
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe-ccccc
Q 026688 48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISR 125 (235)
Q Consensus 48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~ 125 (235)
+....+..++...++++|||||.+.|..+..++...| +++++.+|++++..+.|++++...+. ..++.... +|..+
T Consensus 46 e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~--~~~i~~~~~gdal~ 123 (219)
T COG4122 46 ETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV--DDRIELLLGGDALD 123 (219)
T ss_pred hHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC--cceEEEEecCcHHH
Confidence 3334444444445689999999999999999999887 78999999999999999999999876 45677777 47655
Q ss_pred C-C-CCCCceeEEEecccccccC-ChHHHHHHHHHhccCCcEEEEEEecc
Q 026688 126 L-P-FASSSIDAVHAGAAIHCWS-SPSTGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 126 ~-~-~~~~~~D~i~~~~~l~~~~-~~~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
. . ...++||+|+. .+-+ +...++..+.++|+|||.+++-....
T Consensus 124 ~l~~~~~~~fDliFI----DadK~~yp~~le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 124 VLSRLLDGSFDLVFI----DADKADYPEYLERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred HHHhccCCCccEEEE----eCChhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence 2 2 34589999995 3322 23588999999999999999866544
No 156
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.30 E-value=5.7e-11 Score=86.41 Aligned_cols=128 Identities=18% Similarity=0.137 Sum_probs=81.6
Q ss_pred CCCHHHHHHHHhh------cCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCee
Q 026688 44 PGPEKEFELMKGY------LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL 117 (235)
Q Consensus 44 ~~~~~~~~~i~~~------~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~ 117 (235)
+....+.+.+... .....+.+|||+|||+|-.++.++.......|+..|.++ .++.++.++..+......++.
T Consensus 22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~ 100 (173)
T PF10294_consen 22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVS 100 (173)
T ss_dssp -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------E
T ss_pred chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccccccccc
Confidence 3344455566553 233457899999999999999999884456999999998 999999988876421245677
Q ss_pred EEeccccc-C---CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688 118 LVRADISR-L---PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 118 ~~~~d~~~-~---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
+...|-.+ . ......||+|++..+++.-.....+++.+.++++|+|.+++....+
T Consensus 101 v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 101 VRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred CcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 76666433 1 1234689999999999976666789999999999999877776654
No 157
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=99.30 E-value=1.9e-10 Score=88.15 Aligned_cols=147 Identities=20% Similarity=0.147 Sum_probs=102.8
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh---cC----------------------------
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---ES---------------------------- 109 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~---~~---------------------------- 109 (235)
.+.+||-.|||.|+++..++.++. .+.|.|.|-.|+-..+-.+.. .+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 357999999999999999999987 999999999886554432211 00
Q ss_pred ------CCCCCCeeEEecccccCCCCC---CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccch
Q 026688 110 ------NFPKENFLLVRADISRLPFAS---SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 180 (235)
Q Consensus 110 ------~~~~~~~~~~~~d~~~~~~~~---~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~ 180 (235)
.....++....+|+.+.-.+. ++||+|+..+.+....+.-..++.+.++|||||..+=..|..-+. .+
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~---~~ 210 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHF---EP 210 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccC---CC
Confidence 111235677778887753333 799999998888877788899999999999999665333322111 10
Q ss_pred hHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEe
Q 026688 181 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR 220 (235)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 220 (235)
.. ......-.++.+|+..+++..||++++...
T Consensus 211 ~~--------~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 211 MS--------IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CC--------CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 00 000112458899999999999999876653
No 158
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.28 E-value=2.1e-11 Score=93.56 Aligned_cols=110 Identities=24% Similarity=0.393 Sum_probs=86.0
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCC----CeeEEecccccC------CCCC
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE----NFLLVRADISRL------PFAS 130 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~----~~~~~~~d~~~~------~~~~ 130 (235)
+...++++|||.|..+..+-+.+. ..++|+||.+-.++.|+++......- .. .+.|+++|.... ++++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r-~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNR-FKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred cccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhh-hhcccceeEEEEeccchhHHHHhccCCC
Confidence 378899999999998888877764 58999999999999999988653210 11 367888988642 3344
Q ss_pred CceeEEEeccccccc-CC---hHHHHHHHHHhccCCcEEEEEEecc
Q 026688 131 SSIDAVHAGAAIHCW-SS---PSTGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 131 ~~~D~i~~~~~l~~~-~~---~~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
.+||+|-|.+++|+. .+ ...+|+++.++|+|||+++-+.++.
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 559999999988874 32 3578999999999999999888765
No 159
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.26 E-value=4.4e-11 Score=88.88 Aligned_cols=108 Identities=13% Similarity=0.151 Sum_probs=84.7
Q ss_pred CCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C-----CCCC
Q 026688 59 PVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-----FASS 131 (235)
Q Consensus 59 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~ 131 (235)
...+++|||||+++|..+..+++..| +++++.+|+++...+.|++.+...+. ..++++..+|+.+. + ...+
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~--~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL--DDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG--GGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC--CCcEEEEEeccHhhHHHHHhccCCC
Confidence 33468999999999999999998765 58999999999999999999988765 46899999999752 2 1135
Q ss_pred ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688 132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
+||+|+....= .+....+..+.++|+|||.+++....
T Consensus 121 ~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 121 QFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp SEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred ceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEcccc
Confidence 89999964421 12357788999999999999886544
No 160
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.26 E-value=2.7e-10 Score=94.89 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=82.7
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-
Q 026688 48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL- 126 (235)
Q Consensus 48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~- 126 (235)
.+.+.+.+++...++.+|||+|||+|.++..+++... +|+++|+++.+++.|++++..++ ..+++++.+|+.+.
T Consensus 279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~---~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNG---IANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhC---CCceEEEeCCHHHHH
Confidence 3445566666655678999999999999999998764 89999999999999999988765 35799999998652
Q ss_pred ---CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688 127 ---PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 168 (235)
Q Consensus 127 ---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~ 168 (235)
+....+||+|++.-.-. .-...+++.+.+ ++|++.++++
T Consensus 354 ~~~~~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHHhcCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEc
Confidence 12245799999643211 112355666554 7888876664
No 161
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.26 E-value=1e-10 Score=85.97 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=108.4
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
+.+....-.+.+....+.+|||...|-|+.++..++++. ..|+.++.+|..++.|+-+--+.++. ..+++++.+|+.+
T Consensus 119 P~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~-~~~i~iilGD~~e 196 (287)
T COG2521 119 PLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELF-EIAIKIILGDAYE 196 (287)
T ss_pred cHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCcccc-ccccEEecccHHH
Confidence 344444445566666789999999999999999999874 48999999999999887543333322 2368999999987
Q ss_pred C--CCCCCceeEEEeccc-ccccCC--hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecC
Q 026688 126 L--PFASSSIDAVHAGAA-IHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLS 200 (235)
Q Consensus 126 ~--~~~~~~~D~i~~~~~-l~~~~~--~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (235)
. .+++.+||+|+-.-- |.+... .+.+.++++|+|+|||.++--..++.. .....--
T Consensus 197 ~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~-------------------ryrG~d~ 257 (287)
T COG2521 197 VVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK-------------------RYRGLDL 257 (287)
T ss_pred HHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc-------------------ccccCCh
Confidence 4 477889999993211 111111 158899999999999999876654321 0111123
Q ss_pred HHHHHHHHHHcCCceeEEEe
Q 026688 201 EREIEDLCRACGLVDFKCTR 220 (235)
Q Consensus 201 ~~~~~~~l~~~Gf~~~~~~~ 220 (235)
+..+.+.|+++||++++...
T Consensus 258 ~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 258 PKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred hHHHHHHHHhcCceeeeeeh
Confidence 56788899999999766543
No 162
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.26 E-value=7.5e-11 Score=86.96 Aligned_cols=108 Identities=15% Similarity=0.220 Sum_probs=69.0
Q ss_pred CCCeEEEecCCCchH----HHHHHHc-----CCCceEEEEeCCHHHHHHHHHHh--------------h-----hcC-CC
Q 026688 61 LGGNIIDASCGSGLF----SRIFAKS-----GLFSLVVALDYSENMLKQCYEFV--------------Q-----QES-NF 111 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~----~~~l~~~-----~~~~~v~~~D~s~~~~~~a~~~~--------------~-----~~~-~~ 111 (235)
.+.+|+..||++|.- ++.+.+. ....+++|+|+|+.+++.|++-. . ..+ ..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 568999999999943 3333331 12469999999999999998611 0 000 00
Q ss_pred C-----CCCeeEEecccccCCCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEE
Q 026688 112 P-----KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 168 (235)
Q Consensus 112 ~-----~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~ 168 (235)
. ..++.|...|+.+.+.+.+.||+|+|..++.+++.. .++++.+.+.|+|||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 0 135899999998843356899999999999999866 58999999999999999984
No 163
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.25 E-value=1.4e-10 Score=87.28 Aligned_cols=126 Identities=20% Similarity=0.142 Sum_probs=95.0
Q ss_pred CCCHHHHHHHHhhcCCC---CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe
Q 026688 44 PGPEKEFELMKGYLKPV---LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 120 (235)
Q Consensus 44 ~~~~~~~~~i~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 120 (235)
|+.++..+.+.+.+... .+..|||+|||+|..+..++...+.+.++++|.|+.++..|.++.....+ ..++.+..
T Consensus 128 pETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l--~g~i~v~~ 205 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL--SGRIEVIH 205 (328)
T ss_pred ccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh--cCceEEEe
Confidence 56677888888776532 24579999999999999999999999999999999999999999887765 45777776
Q ss_pred cccccC-----CCCCCceeEEEecccccccCC-------------h-------------HHHHHHHHHhccCCcEEEEEE
Q 026688 121 ADISRL-----PFASSSIDAVHAGAAIHCWSS-------------P-------------STGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 121 ~d~~~~-----~~~~~~~D~i~~~~~l~~~~~-------------~-------------~~~l~~~~~~L~pgG~li~~~ 169 (235)
.+++.. +...+++|+++++--.-.-+| . -.++.-+.|+|+|||.+.+..
T Consensus 206 ~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 206 NIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred cccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 655432 344689999999743211000 0 145667889999999999877
Q ss_pred ec
Q 026688 170 YI 171 (235)
Q Consensus 170 ~~ 171 (235)
..
T Consensus 286 ~~ 287 (328)
T KOG2904|consen 286 VE 287 (328)
T ss_pred cc
Confidence 63
No 164
>PLN02476 O-methyltransferase
Probab=99.25 E-value=1.7e-10 Score=89.10 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=89.0
Q ss_pred HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C-
Q 026688 51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P- 127 (235)
Q Consensus 51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~- 127 (235)
+.+..++...++++|||+|+++|..+..++...+ +.+++.+|.+++..+.|++++...+. ..++++..+|+.+. +
T Consensus 108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl--~~~I~li~GdA~e~L~~ 185 (278)
T PLN02476 108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV--SHKVNVKHGLAAESLKS 185 (278)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHH
Confidence 3344444445578999999999999999988643 56899999999999999999998876 45899999998652 2
Q ss_pred C----CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688 128 F----ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 128 ~----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
+ ..++||+|+....= .+....++.+.++|+|||.|++....
T Consensus 186 l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 186 MIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred HHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 1 13589999964321 12357788999999999999886543
No 165
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.1e-09 Score=76.94 Aligned_cols=124 Identities=17% Similarity=0.127 Sum_probs=90.1
Q ss_pred CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688 58 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 137 (235)
Q Consensus 58 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 137 (235)
....+++|+|+|||+|.++...+-.++ ..|+|+|+++++++.++++.... ..++.+.+.|+.+.. ..+|.++
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l----~g~v~f~~~dv~~~~---~~~dtvi 113 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEEL----LGDVEFVVADVSDFR---GKFDTVI 113 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhh----CCceEEEEcchhhcC---CccceEE
Confidence 344567899999999999999988886 58999999999999999998873 458999999998864 6788999
Q ss_pred ecccccccC--ChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCce
Q 026688 138 AGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD 215 (235)
Q Consensus 138 ~~~~l~~~~--~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 215 (235)
++--+.... ....++..+.+.. .++.+.+.. -+.+.+++..+.+|+.+
T Consensus 114 mNPPFG~~~rhaDr~Fl~~Ale~s----~vVYsiH~a--------------------------~~~~f~~~~~~~~G~~v 163 (198)
T COG2263 114 MNPPFGSQRRHADRPFLLKALEIS----DVVYSIHKA--------------------------GSRDFVEKFAADLGGTV 163 (198)
T ss_pred ECCCCccccccCCHHHHHHHHHhh----heEEEeecc--------------------------ccHHHHHHHHHhcCCeE
Confidence 875553221 1135666666654 223222221 15677788888899877
Q ss_pred eEEE
Q 026688 216 FKCT 219 (235)
Q Consensus 216 ~~~~ 219 (235)
....
T Consensus 164 ~~~~ 167 (198)
T COG2263 164 THIE 167 (198)
T ss_pred EEEE
Confidence 6553
No 166
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.23 E-value=1.2e-09 Score=86.44 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=72.9
Q ss_pred CCCCCHHHHHHHHhhcCC--------CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-CCCC
Q 026688 42 GFPGPEKEFELMKGYLKP--------VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFP 112 (235)
Q Consensus 42 ~~~~~~~~~~~i~~~~~~--------~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~ 112 (235)
..|.....+..+.+++.. ....++||||||+|.....++.+.+..+++|+|+++.+++.|++++..+ ++
T Consensus 87 piP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-- 164 (321)
T PRK11727 87 PIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-- 164 (321)
T ss_pred CCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC--
Confidence 345555666666666422 2458999999999988888877766779999999999999999999887 44
Q ss_pred CCCeeEEe-cccccCC----CCCCceeEEEecccccc
Q 026688 113 KENFLLVR-ADISRLP----FASSSIDAVHAGAAIHC 144 (235)
Q Consensus 113 ~~~~~~~~-~d~~~~~----~~~~~~D~i~~~~~l~~ 144 (235)
..++.+.. .|..... .+.+.||+|+|+--++.
T Consensus 165 ~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 165 NGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred cCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcC
Confidence 34677754 3332211 23568999999977653
No 167
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.22 E-value=6.4e-10 Score=87.34 Aligned_cols=120 Identities=21% Similarity=0.282 Sum_probs=97.3
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec-ccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DIS 124 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~ 124 (235)
..++.+.+.++....++..|||.=||||.+++...-.|. .++|.|++..|++-|+.++...+. ....+... |+.
T Consensus 182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y~i---~~~~~~~~~Da~ 256 (347)
T COG1041 182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYYGI---EDYPVLKVLDAT 256 (347)
T ss_pred CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhhCc---CceeEEEecccc
Confidence 567778888888888889999999999999999988776 999999999999999999988752 34544444 999
Q ss_pred cCCCCCCceeEEEeccccccc-----CC----hHHHHHHHHHhccCCcEEEEEEe
Q 026688 125 RLPFASSSIDAVHAGAAIHCW-----SS----PSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 125 ~~~~~~~~~D~i~~~~~l~~~-----~~----~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
.+|++...+|.|++.--..-- .. ..++++.+.++|++||++++..+
T Consensus 257 ~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 257 NLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999887789999986332211 11 14889999999999999998765
No 168
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.19 E-value=7.3e-10 Score=81.02 Aligned_cols=116 Identities=20% Similarity=0.237 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCce---------EEEEeCCHHHHHHHHHHhhhcCCCCCC
Q 026688 44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL---------VVALDYSENMLKQCYEFVQQESNFPKE 114 (235)
Q Consensus 44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~---------v~~~D~s~~~~~~a~~~~~~~~~~~~~ 114 (235)
+-...+...++.+....++..|||.-||+|.+.+..+..+.... ++|.|+++.+++.|++++...+. ..
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~--~~ 88 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV--ED 88 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CG
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc--CC
Confidence 34567778888888887889999999999999998877655545 89999999999999999988765 45
Q ss_pred CeeEEecccccCCCCCCceeEEEeccccccc-CCh-------HHHHHHHHHhccC
Q 026688 115 NFLLVRADISRLPFASSSIDAVHAGAAIHCW-SSP-------STGVAEISRVLRP 161 (235)
Q Consensus 115 ~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~-~~~-------~~~l~~~~~~L~p 161 (235)
.+.+...|+.++++..+.+|.|+++--...- ... .++++++.+++++
T Consensus 89 ~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 89 YIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp GEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred ceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 6899999999988767899999997554321 111 3678899999999
No 169
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.19 E-value=1.1e-09 Score=76.49 Aligned_cols=126 Identities=17% Similarity=0.240 Sum_probs=104.8
Q ss_pred ccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCee
Q 026688 39 VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFL 117 (235)
Q Consensus 39 ~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~ 117 (235)
.....|.+..+.+.+.+.+....+.-|||+|.|+|.++..++.++ +...++++|+|++......+.. +.++
T Consensus 26 VGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~--------p~~~ 97 (194)
T COG3963 26 VGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY--------PGVN 97 (194)
T ss_pred eeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--------CCcc
Confidence 345568888899999999999999999999999999999999885 4568999999999999988874 3466
Q ss_pred EEecccccCC-----CCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEecc
Q 026688 118 LVRADISRLP-----FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 118 ~~~~d~~~~~-----~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
++.+|+..+. ...+.||.|+|..-+-.++-. .++++.+...|.+||.++.-..+.
T Consensus 98 ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 98 IINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred ccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 8888887643 456789999998877777644 488999999999999999877763
No 170
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=99.19 E-value=8.3e-11 Score=89.18 Aligned_cols=110 Identities=26% Similarity=0.376 Sum_probs=86.5
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688 48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 127 (235)
Q Consensus 48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 127 (235)
.....++..... +..++|+|||.|.++. ..|.+.+.+.|++...+..+++. .......+|+..+|
T Consensus 34 p~v~qfl~~~~~--gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~---------~~~~~~~ad~l~~p 98 (293)
T KOG1331|consen 34 PMVRQFLDSQPT--GSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS---------GGDNVCRADALKLP 98 (293)
T ss_pred HHHHHHHhccCC--cceeeecccCCcccCc----CCCcceeeecchhhhhccccccC---------CCceeehhhhhcCC
Confidence 333444444444 7899999999997653 22667899999999888888752 12268889999999
Q ss_pred CCCCceeEEEecccccccCCh---HHHHHHHHHhccCCcEEEEEEecc
Q 026688 128 FASSSIDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 128 ~~~~~~D~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
+...+||.++...++||+... ..+++++.++++|||..++..+..
T Consensus 99 ~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 99 FREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred CCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 999999999999999999765 489999999999999988766544
No 171
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.18 E-value=2.5e-10 Score=89.20 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=72.7
Q ss_pred CCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688 45 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124 (235)
Q Consensus 45 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 124 (235)
......+.+.+.+...++.+|||+|||+|.++..++++++ +|+++|+++.+++.+++++. ..+++++++|+.
T Consensus 26 ~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~------~~~v~~i~~D~~ 97 (272)
T PRK00274 26 IDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA------EDNLTIIEGDAL 97 (272)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc------cCceEEEEChhh
Confidence 3566778888888877788999999999999999999976 99999999999999988653 247999999998
Q ss_pred cCCCCCCceeEEEeccc
Q 026688 125 RLPFASSSIDAVHAGAA 141 (235)
Q Consensus 125 ~~~~~~~~~D~i~~~~~ 141 (235)
+.+++.-.+|.|+++..
T Consensus 98 ~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 98 KVDLSELQPLKVVANLP 114 (272)
T ss_pred cCCHHHcCcceEEEeCC
Confidence 87654222578887654
No 172
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.17 E-value=4.1e-10 Score=87.30 Aligned_cols=89 Identities=12% Similarity=0.209 Sum_probs=74.9
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
.....+.+.+.+...++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++.. ..+++++++|+.+
T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~ 86 (258)
T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALK 86 (258)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc-----CCCEEEEEecccc
Confidence 567778888888777789999999999999999999854 899999999999999987754 3479999999988
Q ss_pred CCCCCCceeEEEeccccc
Q 026688 126 LPFASSSIDAVHAGAAIH 143 (235)
Q Consensus 126 ~~~~~~~~D~i~~~~~l~ 143 (235)
.+++ .+|.|+++..++
T Consensus 87 ~~~~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 87 VDLP--EFNKVVSNLPYQ 102 (258)
T ss_pred CCch--hceEEEEcCCcc
Confidence 7654 589999876654
No 173
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.17 E-value=3.2e-10 Score=88.28 Aligned_cols=107 Identities=12% Similarity=0.119 Sum_probs=78.8
Q ss_pred CCeEEEecCCCchH----HHHHHHcC----CCceEEEEeCCHHHHHHHHHHh------------------hhc-----C-
Q 026688 62 GGNIIDASCGSGLF----SRIFAKSG----LFSLVVALDYSENMLKQCYEFV------------------QQE-----S- 109 (235)
Q Consensus 62 ~~~vLdiG~G~G~~----~~~l~~~~----~~~~v~~~D~s~~~~~~a~~~~------------------~~~-----~- 109 (235)
..+|+..||.+|.- ++.+.+.. ...+|+|+|+|+.+++.|++-. ... +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 47999999999943 33333322 1468999999999999998642 000 0
Q ss_pred --CC--CCCCeeEEecccccCCCC-CCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEE
Q 026688 110 --NF--PKENFLLVRADISRLPFA-SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 168 (235)
Q Consensus 110 --~~--~~~~~~~~~~d~~~~~~~-~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~ 168 (235)
.. -...+.|...|+.+.+++ .+.||+|+|..++.|++.. .++++.+.+.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 00 013578999999875432 5789999999999999764 58999999999999988764
No 174
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=7.9e-09 Score=73.28 Aligned_cols=131 Identities=21% Similarity=0.239 Sum_probs=96.4
Q ss_pred hhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCce
Q 026688 55 GYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 133 (235)
Q Consensus 55 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 133 (235)
..+....+.-++|||||+|..+..+++. ++++.+.++|++|.+++...+-+..+ ..++..++.|+... +..++.
T Consensus 37 ~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n----~~~~~~V~tdl~~~-l~~~~V 111 (209)
T KOG3191|consen 37 AELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN----RVHIDVVRTDLLSG-LRNESV 111 (209)
T ss_pred HHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc----CCccceeehhHHhh-hccCCc
Confidence 3344444788999999999999988876 56778999999999999888776655 34688899998763 234889
Q ss_pred eEEEecccccccC-----------------C----hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhc
Q 026688 134 DAVHAGAAIHCWS-----------------S----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI 192 (235)
Q Consensus 134 D~i~~~~~l~~~~-----------------~----~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (235)
|+++.+-..---+ + .++++..+-.+|.|.|.+++.....
T Consensus 112 DvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~-------------------- 171 (209)
T KOG3191|consen 112 DVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA-------------------- 171 (209)
T ss_pred cEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh--------------------
Confidence 9999874321110 0 1356777778889999999876543
Q ss_pred CCceeecCHHHHHHHHHHcCCcee
Q 026688 193 SGSYTFLSEREIEDLCRACGLVDF 216 (235)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~~Gf~~~ 216 (235)
-.++++..+++..||...
T Consensus 172 ------N~p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 172 ------NKPKEILKILEKKGYGVR 189 (209)
T ss_pred ------cCHHHHHHHHhhccccee
Confidence 246788889999999653
No 175
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.16 E-value=1e-09 Score=89.54 Aligned_cols=109 Identities=12% Similarity=0.146 Sum_probs=78.3
Q ss_pred HHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC-CCC
Q 026688 53 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASS 131 (235)
Q Consensus 53 i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~ 131 (235)
+..++...++.+|||++||+|.++..++..+ .+|+++|+++.+++.|++++...+. .++++.++|+.+... ...
T Consensus 225 ~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~~~~---~~~~~~~~d~~~~~~~~~~ 299 (374)
T TIGR02085 225 ARQWVREIPVTQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQMLGL---DNLSFAALDSAKFATAQMS 299 (374)
T ss_pred HHHHHHhcCCCEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHHHHhcCC
Confidence 3344443346799999999999999999765 4899999999999999999887653 479999999976321 124
Q ss_pred ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
+||+|+++---.. -...+++.+. .++|++.++++.
T Consensus 300 ~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 300 APELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEEe
Confidence 6999997533211 1135555554 468887777654
No 176
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.16 E-value=4.4e-10 Score=88.25 Aligned_cols=92 Identities=11% Similarity=0.146 Sum_probs=76.0
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
.....+.+.+.+...++.+|||||||+|.++..+++... +++++|+|+.+++.+++++...+. ..+++++.+|+.+
T Consensus 21 d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~--~~~v~ii~~Dal~ 96 (294)
T PTZ00338 21 NPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPL--ASKLEVIEGDALK 96 (294)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCC--CCcEEEEECCHhh
Confidence 456778888888877789999999999999999998865 899999999999999998876432 3579999999987
Q ss_pred CCCCCCceeEEEeccccc
Q 026688 126 LPFASSSIDAVHAGAAIH 143 (235)
Q Consensus 126 ~~~~~~~~D~i~~~~~l~ 143 (235)
.++ ..||.|+++...+
T Consensus 97 ~~~--~~~d~VvaNlPY~ 112 (294)
T PTZ00338 97 TEF--PYFDVCVANVPYQ 112 (294)
T ss_pred hcc--cccCEEEecCCcc
Confidence 654 4689988764443
No 177
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.14 E-value=9.8e-10 Score=85.27 Aligned_cols=111 Identities=12% Similarity=0.123 Sum_probs=88.1
Q ss_pred cCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC--CCCCCCeeEEecccccC-CCCCCce
Q 026688 57 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--NFPKENFLLVRADISRL-PFASSSI 133 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~d~~~~-~~~~~~~ 133 (235)
.++.+ ++||-||.|.|..+..+.++.+..+++.+|+++.+++.|++.+.... .. ++++++...|..+. .-...+|
T Consensus 73 ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~v~~~~~~f 150 (282)
T COG0421 73 AHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEFLRDCEEKF 150 (282)
T ss_pred hCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHHHHhCCCcC
Confidence 34444 79999999999999999999888899999999999999999997643 22 47899999998764 2123489
Q ss_pred eEEEecccccccCC----hHHHHHHHHHhccCCcEEEEEE
Q 026688 134 DAVHAGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 134 D~i~~~~~l~~~~~----~~~~l~~~~~~L~pgG~li~~~ 169 (235)
|+|++...=.--+. ...+++.+++.|+++|.++...
T Consensus 151 DvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 151 DVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 99997654431111 1589999999999999999873
No 178
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.14 E-value=2.1e-09 Score=83.23 Aligned_cols=88 Identities=11% Similarity=0.175 Sum_probs=72.1
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
.....+.+.+.+...++.+|||+|||+|.++..++++++ .++++|+++.+++.+++++.. ..++++..+|+.+
T Consensus 14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~ 86 (253)
T TIGR00755 14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALK 86 (253)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhc
Confidence 566778888888777789999999999999999999986 799999999999999887643 3478999999988
Q ss_pred CCCCCCcee---EEEecccc
Q 026688 126 LPFASSSID---AVHAGAAI 142 (235)
Q Consensus 126 ~~~~~~~~D---~i~~~~~l 142 (235)
.+++ .+| .|+++..+
T Consensus 87 ~~~~--~~d~~~~vvsNlPy 104 (253)
T TIGR00755 87 VDLP--DFPKQLKVVSNLPY 104 (253)
T ss_pred CChh--HcCCcceEEEcCCh
Confidence 7754 466 66665443
No 179
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.13 E-value=6.1e-10 Score=85.01 Aligned_cols=118 Identities=12% Similarity=0.064 Sum_probs=89.5
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688 48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 126 (235)
Q Consensus 48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 126 (235)
...+.+..++....+++|||||+++|..+..++... ++++++.+|.+++..+.|++.+...+. ..++++..+|+.+.
T Consensus 66 ~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~--~~~I~~~~G~a~e~ 143 (247)
T PLN02589 66 DEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV--AHKIDFREGPALPV 143 (247)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCceEEEeccHHHH
Confidence 333444444444457899999999999999998764 467999999999999999999998876 56899999998663
Q ss_pred -C-C-----CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 127 -P-F-----ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 127 -~-~-----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
+ + ..++||+|++..-= .+....+..+.++|+|||.|++-..
T Consensus 144 L~~l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 144 LDQMIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred HHHHHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 2 1 12689999964331 1224678889999999999887543
No 180
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.11 E-value=6e-10 Score=87.05 Aligned_cols=104 Identities=16% Similarity=0.300 Sum_probs=80.3
Q ss_pred CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEe
Q 026688 59 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 138 (235)
Q Consensus 59 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 138 (235)
...++.|||+|||+|.+++..++.|. .+|+++|.|. +.+.|++.+..++. ...++++.+.+++..+|.++.|+|++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA-~~V~aVe~S~-ia~~a~~iv~~N~~--~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGA-RKVYAVEASS-IADFARKIVKDNGL--EDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCc-ceEEEEechH-HHHHHHHHHHhcCc--cceEEEeecceEEEecCccceeEEee
Confidence 34589999999999999999999984 6999999877 56999998888775 44689999999987777889999997
Q ss_pred ccc---ccccCChHHHHHHHHHhccCCcEEE
Q 026688 139 GAA---IHCWSSPSTGVAEISRVLRPGGVFV 166 (235)
Q Consensus 139 ~~~---l~~~~~~~~~l~~~~~~L~pgG~li 166 (235)
=+. +.+-.-.+.+|-.=-+-|+|||.++
T Consensus 134 EWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 134 EWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 443 2221112344444456889999887
No 181
>PLN02823 spermine synthase
Probab=99.10 E-value=1.4e-09 Score=86.74 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=82.0
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC-CCCCCCeeEEecccccC-CCCCCceeEEEe
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA 138 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~ 138 (235)
.+++||.+|+|.|..+..+++..+..+++.+|+++.+++.|++.+.... ....++++++..|..+. ....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 3689999999999999999887656689999999999999999876421 11256899999998763 333578999998
Q ss_pred cccccc--cCC----hHHHHH-HHHHhccCCcEEEEEE
Q 026688 139 GAAIHC--WSS----PSTGVA-EISRVLRPGGVFVGTT 169 (235)
Q Consensus 139 ~~~l~~--~~~----~~~~l~-~~~~~L~pgG~li~~~ 169 (235)
...-.. -+. ...+++ .+++.|+|||.+++..
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 632110 000 135777 8999999999987643
No 182
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.09 E-value=1.6e-09 Score=83.40 Aligned_cols=108 Identities=12% Similarity=0.137 Sum_probs=80.6
Q ss_pred CCCeEEEecCCCch----HHHHHHHcCC-----CceEEEEeCCHHHHHHHHHHhhh-----cC-------------CCC-
Q 026688 61 LGGNIIDASCGSGL----FSRIFAKSGL-----FSLVVALDYSENMLKQCYEFVQQ-----ES-------------NFP- 112 (235)
Q Consensus 61 ~~~~vLdiG~G~G~----~~~~l~~~~~-----~~~v~~~D~s~~~~~~a~~~~~~-----~~-------------~~~- 112 (235)
.+-+|+..||++|. +++.+.+..+ ..+|+|+|+|..+++.|+.-.=. .+ ..+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36899999999993 3444444443 57999999999999998841100 00 000
Q ss_pred -------CCCeeEEecccccCCCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEE
Q 026688 113 -------KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 168 (235)
Q Consensus 113 -------~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~ 168 (235)
-..|.|...|+...++..+.||+|+|-.++-+++.+ .++++.++..|+|||+|++.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 124788888887655345789999999999999866 58999999999999999984
No 183
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.07 E-value=6.9e-09 Score=84.48 Aligned_cols=115 Identities=18% Similarity=0.159 Sum_probs=85.9
Q ss_pred HHHHHhhcCCC-CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688 50 FELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 128 (235)
Q Consensus 50 ~~~i~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 128 (235)
...+.+.+... +..+|||++||+|..+..++......+|+++|+++.+++.+++++..++. .++.+.+.|+...-.
T Consensus 45 ~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~---~~~~v~~~Da~~~l~ 121 (382)
T PRK04338 45 SVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL---ENEKVFNKDANALLH 121 (382)
T ss_pred HHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CceEEEhhhHHHHHh
Confidence 33444444322 34689999999999999998765445899999999999999999987653 356788899866321
Q ss_pred CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688 129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
..+.||+|++.-. ..+..++..+.+.+++||.++++...
T Consensus 122 ~~~~fD~V~lDP~----Gs~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 122 EERKFDVVDIDPF----GSPAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred hcCCCCEEEECCC----CCcHHHHHHHHHHhcCCCEEEEEecC
Confidence 1457999997531 34567888878889999999998443
No 184
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.05 E-value=3.8e-09 Score=78.03 Aligned_cols=109 Identities=21% Similarity=0.268 Sum_probs=78.7
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688 49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 128 (235)
Q Consensus 49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 128 (235)
...++.+.+.. +.+|+|+.||-|.++..+++......|+++|++|..++..++.+..+.. ..++....+|..+...
T Consensus 91 Er~Ri~~~v~~--~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv--~~~i~~~~~D~~~~~~ 166 (200)
T PF02475_consen 91 ERRRIANLVKP--GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV--ENRIEVINGDAREFLP 166 (200)
T ss_dssp HHHHHHTC--T--T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT---TTTEEEEES-GGG---
T ss_pred HHHHHHhcCCc--ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC--CCeEEEEcCCHHHhcC
Confidence 34556665444 8899999999999999999966566899999999999999999998876 4578899999988654
Q ss_pred CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEE
Q 026688 129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 166 (235)
Q Consensus 129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li 166 (235)
...+|.|++... .....+|..+.+++++||.+-
T Consensus 167 -~~~~drvim~lp----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 167 -EGKFDRVIMNLP----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -TT-EEEEEE--T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred -ccccCEEEECCh----HHHHHHHHHHHHHhcCCcEEE
Confidence 688999997432 223467899999999998764
No 185
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.04 E-value=4.2e-09 Score=85.12 Aligned_cols=109 Identities=18% Similarity=0.156 Sum_probs=86.5
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C---CCCCceeEEE
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P---FASSSIDAVH 137 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~---~~~~~~D~i~ 137 (235)
+++||++-|-||.++.+.+..|. .+|+.||.|...++.|++++..++.. ..++.++++|+.+. . -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~-~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLD-GDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCC-ccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 78999999999999999998764 49999999999999999999988753 35689999999763 1 2235899999
Q ss_pred eccccc-c--------cCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688 138 AGAAIH-C--------WSSPSTGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 138 ~~~~l~-~--------~~~~~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
+.---. - ..+...++..+.++|+|||.+++.+...
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 752211 0 1122477889999999999999987654
No 186
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.04 E-value=2.5e-09 Score=82.84 Aligned_cols=114 Identities=17% Similarity=0.244 Sum_probs=85.9
Q ss_pred HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688 51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 130 (235)
Q Consensus 51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 130 (235)
+.+++....-.++.|||+|||+|.++...++.+. .+|++++.|+ |.+.|++.++.+++ ..+|.++.+.+++..+|
T Consensus 167 ~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~-MAqyA~~Lv~~N~~--~~rItVI~GKiEdieLP- 241 (517)
T KOG1500|consen 167 RAILENHSDFQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASE-MAQYARKLVASNNL--ADRITVIPGKIEDIELP- 241 (517)
T ss_pred HHHHhcccccCCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhH-HHHHHHHHHhcCCc--cceEEEccCccccccCc-
Confidence 3445545555689999999999999999999885 5899999865 99999999988765 67899999999998776
Q ss_pred CceeEEEecccccccCChH--HHHHHHHHhccCCcEEEEEE
Q 026688 131 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 131 ~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~ 169 (235)
++.|+||+--.=.-+-+.. ...-..++.|+|.|.++=..
T Consensus 242 Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 242 EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 7789999642222111221 23346679999999887433
No 187
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.04 E-value=9.2e-09 Score=78.98 Aligned_cols=111 Identities=13% Similarity=0.116 Sum_probs=82.5
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCC-CCCCCeeEEecccccC-CCCCC-ceeEEE
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-FPKENFLLVRADISRL-PFASS-SIDAVH 137 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~d~~~~-~~~~~-~~D~i~ 137 (235)
.+++||-||.|.|..+..+.+..+..+++++|+++.+++.|++.+..... ..+++++++..|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 47999999999999999999877567999999999999999998765321 1256899999998653 11224 899999
Q ss_pred ecccccccCCh----HHHHHHHHHhccCCcEEEEEEec
Q 026688 138 AGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 138 ~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
....-...+.. ..+++.+++.|+|||.+++....
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS 193 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence 75443222221 48899999999999999987643
No 188
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.03 E-value=5.6e-09 Score=86.50 Aligned_cols=102 Identities=15% Similarity=0.258 Sum_probs=74.7
Q ss_pred CCeEEEecCCCchHHHHHHHcC----CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688 62 GGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 137 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~----~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 137 (235)
+..|+|||||+|-++...++.+ ...+|+++|-++.+....++++..+++ ..+|+++.+|+.+...+ .++|+||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w--~~~V~vi~~d~r~v~lp-ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW--GDKVTVIHGDMREVELP-EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT--TTTEEEEES-TTTSCHS-S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC--CCeEEEEeCcccCCCCC-CceeEEE
Confidence 5789999999999998777664 346999999999888887777666655 56899999999998765 5899999
Q ss_pred ec--ccccccCChHHHHHHHHHhccCCcEEE
Q 026688 138 AG--AAIHCWSSPSTGVAEISRVLRPGGVFV 166 (235)
Q Consensus 138 ~~--~~l~~~~~~~~~l~~~~~~L~pgG~li 166 (235)
+= +++..-.-....|....+.|+|||.++
T Consensus 264 SElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 62 222211122356888899999998876
No 189
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=99.03 E-value=1.1e-08 Score=78.06 Aligned_cols=148 Identities=20% Similarity=0.126 Sum_probs=90.4
Q ss_pred CCCeEEEecCCC--chHHHHHHH-cCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------
Q 026688 61 LGGNIIDASCGS--GLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------- 127 (235)
Q Consensus 61 ~~~~vLdiG~G~--G~~~~~l~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---------- 127 (235)
.-...||+|||- ......+++ ..|+++|..+|.+|-.+..++..+.... .....++.+|+.+..
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~---~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP---RGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T---TSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC---CccEEEEeCCCCCHHHHhcCHHHHh
Confidence 457899999994 234444444 4788999999999999999999887632 123889999997631
Q ss_pred -CCCCceeEEEecccccccCC---hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHH
Q 026688 128 -FASSSIDAVHAGAAIHCWSS---PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE 203 (235)
Q Consensus 128 -~~~~~~D~i~~~~~l~~~~~---~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (235)
+.-...=.+++..++||++| +..+++.+.+.|.||.+|+++..+.+. .......+...+.......+..|.++
T Consensus 145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~---~p~~~~~~~~~~~~~~~~~~~Rs~~e 221 (267)
T PF04672_consen 145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDG---APERAEALEAVYAQAGSPGRPRSREE 221 (267)
T ss_dssp C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TT---SHHHHHHHHHHHHHCCS----B-HHH
T ss_pred cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCC---CHHHHHHHHHHHHcCCCCceecCHHH
Confidence 11123346778889999865 468999999999999999999987642 11222444555555666788899999
Q ss_pred HHHHHHHcCCcee
Q 026688 204 IEDLCRACGLVDF 216 (235)
Q Consensus 204 ~~~~l~~~Gf~~~ 216 (235)
+..+|. ||+.+
T Consensus 222 i~~~f~--g~elv 232 (267)
T PF04672_consen 222 IAAFFD--GLELV 232 (267)
T ss_dssp HHHCCT--TSEE-
T ss_pred HHHHcC--CCccC
Confidence 999988 88754
No 190
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.02 E-value=3.2e-09 Score=89.71 Aligned_cols=108 Identities=15% Similarity=0.144 Sum_probs=86.9
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--CCCCCceeEEEe
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHA 138 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~i~~ 138 (235)
....+||||||.|.++..+++..|+..++|+|++...+..+.++....+ ..|+.+.+.|+..+ -++.+++|.|++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~---l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN---ITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC---CCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 3578999999999999999999999999999999999988888876655 45788888887543 256788999997
Q ss_pred cccccccCCh--------HHHHHHHHHhccCCcEEEEEEec
Q 026688 139 GAAIHCWSSP--------STGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 139 ~~~l~~~~~~--------~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
++.--|.... ..+++.+.++|+|||.+.+.+-.
T Consensus 424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 6554443322 37899999999999999987643
No 191
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.02 E-value=1.3e-08 Score=75.09 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688 44 PGPEKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 122 (235)
Q Consensus 44 ~~~~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d 122 (235)
|......+.+...+. ...+.++||++||+|.++..++.++. ..|+++|.++.+++.+++++...+. ..++++.+.|
T Consensus 31 pt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~--~~~~~~~~~D 107 (189)
T TIGR00095 31 PTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKS--GEQAEVVRNS 107 (189)
T ss_pred CchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCC--cccEEEEehh
Confidence 444555666666553 23478999999999999999999975 4899999999999999999887653 3468899999
Q ss_pred cccC-C-C-CC-CceeEEEecccccccCChHHHHHHHHH--hccCCcEEEEEEec
Q 026688 123 ISRL-P-F-AS-SSIDAVHAGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYI 171 (235)
Q Consensus 123 ~~~~-~-~-~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~--~L~pgG~li~~~~~ 171 (235)
+... . . .. ..||+|+..-.+.. ......+..+.+ .|+++|.+++....
T Consensus 108 ~~~~l~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 108 ALRALKFLAKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred HHHHHHHhhccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 9542 1 1 12 24788876544431 223444554443 68888877765543
No 192
>PRK00536 speE spermidine synthase; Provisional
Probab=99.02 E-value=8.3e-09 Score=79.24 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=76.6
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-CCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRLPFASSSIDAVHAG 139 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~ 139 (235)
.+++||-+|.|.|..+..++++. .+|+-+|+++.+++.+++.+... +...+++++++.. +.+ ...++||+|++.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 36999999999999999999874 39999999999999999977542 1223567777652 222 123689999976
Q ss_pred ccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
.. .+..+.+.+++.|+|||.++...
T Consensus 147 s~-----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE-----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC-----CChHHHHHHHHhcCCCcEEEECC
Confidence 43 33577899999999999998754
No 193
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.00 E-value=5.8e-09 Score=81.12 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=84.9
Q ss_pred CCCCCHHH-HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe
Q 026688 42 GFPGPEKE-FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 120 (235)
Q Consensus 42 ~~~~~~~~-~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 120 (235)
++..-++. ..++.+... +++|||+-|-+|.++.+.+..+. .+|+.+|.|..+++.+++++..++.. ..++++++
T Consensus 106 GlFlDqR~nR~~v~~~~~---gkrvLnlFsYTGgfsv~Aa~gGA-~~v~~VD~S~~al~~a~~N~~lNg~~-~~~~~~~~ 180 (286)
T PF10672_consen 106 GLFLDQRENRKWVRKYAK---GKRVLNLFSYTGGFSVAAAAGGA-KEVVSVDSSKRALEWAKENAALNGLD-LDRHRFIQ 180 (286)
T ss_dssp SS-GGGHHHHHHHHHHCT---TCEEEEET-TTTHHHHHHHHTTE-SEEEEEES-HHHHHHHHHHHHHTT-C-CTCEEEEE
T ss_pred eEcHHHHhhHHHHHHHcC---CCceEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEEe
Confidence 33333444 444444433 78999999999999998887663 47999999999999999999988753 35789999
Q ss_pred cccccC-C-C-CCCceeEEEecccccc------cCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688 121 ADISRL-P-F-ASSSIDAVHAGAAIHC------WSSPSTGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 121 ~d~~~~-~-~-~~~~~D~i~~~~~l~~------~~~~~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
.|+.+. . . ..+.||+||+.---.- ..+...++..+.++|+|||.|+......
T Consensus 181 ~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 181 GDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp S-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred cCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 999762 1 1 2468999998522110 1122467889999999999998776654
No 194
>PRK04148 hypothetical protein; Provisional
Probab=99.00 E-value=1.5e-08 Score=69.42 Aligned_cols=107 Identities=10% Similarity=0.112 Sum_probs=74.2
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCCch-HHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688 49 EFELMKGYLKPVLGGNIIDASCGSGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 127 (235)
Q Consensus 49 ~~~~i~~~~~~~~~~~vLdiG~G~G~-~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 127 (235)
..+.+.+.+....+.++||||||+|. .+..|.+.+. .|+++|+++..++.+++. .++++..|+.+..
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~ 71 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPN 71 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHh----------CCeEEECcCCCCC
Confidence 44556666655556899999999996 8888888776 999999999998888764 3678999998744
Q ss_pred CC-CCceeEEEecccccccCChHHHHHHHHHhccC-CcEEEEEEeccC
Q 026688 128 FA-SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP-GGVFVGTTYIVD 173 (235)
Q Consensus 128 ~~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p-gG~li~~~~~~~ 173 (235)
+. -+.+|+|.+ +..|..+..-+.++.+. |.-+++.....+
T Consensus 72 ~~~y~~a~liys------irpp~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 72 LEIYKNAKLIYS------IRPPRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred HHHHhcCCEEEE------eCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 22 256888885 33343444444444443 456777665544
No 195
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=99.00 E-value=2.4e-09 Score=81.75 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=96.2
Q ss_pred CCCeEEEecCCCchHHH-HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC-------------CCCC------------C
Q 026688 61 LGGNIIDASCGSGLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPK------------E 114 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~-~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-------------~~~~------------~ 114 (235)
.+.++||||||+-.... .+.+.. .+++..|+.+..++..++.+...+ +.+. .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f--~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWF--EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTE--EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhh--cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 46799999999854432 233333 389999999988887776554321 0000 0
Q ss_pred Ce-eEEecccccCC-CCC-----CceeEEEecccccccC-Ch---HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHH
Q 026688 115 NF-LLVRADISRLP-FAS-----SSIDAVHAGAAIHCWS-SP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR 183 (235)
Q Consensus 115 ~~-~~~~~d~~~~~-~~~-----~~~D~i~~~~~l~~~~-~~---~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~ 183 (235)
.+ .++.+|+.+.+ +.. +.||+|++..+++... +. ...++++.++|||||.|++.............
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~--- 210 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGG--- 210 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETT---
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECC---
Confidence 12 36778887643 222 2599999999998764 33 47899999999999999998876532110000
Q ss_pred HHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEe------eCcEEEEEEec
Q 026688 184 LLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR------NRGFVMFTATK 231 (235)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~------~~~~~~~~~~k 231 (235)
..-+.-.++.+.+++.|+++||.+..... .....+++|+|
T Consensus 211 --------~~F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 211 --------HKFPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp --------EEEE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred --------EecccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 00112356889999999999999877763 22345666665
No 196
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=5.5e-09 Score=75.79 Aligned_cols=112 Identities=22% Similarity=0.317 Sum_probs=83.6
Q ss_pred HHHhhcC--CCCCCeEEEecCCCchHHHHHHHc-C-CCceEEEEeCCHHHHHHHHHHhhhcCC-------CCCCCeeEEe
Q 026688 52 LMKGYLK--PVLGGNIIDASCGSGLFSRIFAKS-G-LFSLVVALDYSENMLKQCYEFVQQESN-------FPKENFLLVR 120 (235)
Q Consensus 52 ~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~v~~~D~s~~~~~~a~~~~~~~~~-------~~~~~~~~~~ 120 (235)
.+++++. ..|+.+.||+|+|+|+++..++.. + +.....|+|.-++.++.+++++...-. ....++.++.
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 4444444 455899999999999999988864 2 233459999999999999998876431 0023578889
Q ss_pred cccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 121 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 121 ~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
+|......+..+||.|.+.... .+..+++.+.|+|||.+++-.
T Consensus 151 GDgr~g~~e~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CCccccCCccCCcceEEEccCc------cccHHHHHHhhccCCeEEEee
Confidence 9998765567899999986333 355678999999999999854
No 197
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.98 E-value=7.7e-09 Score=83.98 Aligned_cols=112 Identities=14% Similarity=0.187 Sum_probs=76.5
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688 47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 126 (235)
Q Consensus 47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 126 (235)
+.+.+.+.+++... +.++||++||+|.++..+++... +|+++|+++.+++.+++++..++ ..++++.+.|+.+.
T Consensus 193 e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~---~~~v~~~~~d~~~~ 266 (362)
T PRK05031 193 EKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANG---IDNVQIIRMSAEEF 266 (362)
T ss_pred HHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhC---CCcEEEEECCHHHH
Confidence 34555555555432 35799999999999999988765 89999999999999999988765 34799999998662
Q ss_pred -C-CC--------------CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 127 -P-FA--------------SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 127 -~-~~--------------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
+ +. ...||+|++.--- ..-..++++.+.+ |++.++++.
T Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 267 TQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQA---YERILYISC 320 (362)
T ss_pred HHHHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHHc---cCCEEEEEe
Confidence 1 10 1258999953221 0011344455543 666666544
No 198
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=4.9e-08 Score=73.69 Aligned_cols=114 Identities=17% Similarity=0.278 Sum_probs=96.7
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
...+..|...+...|+.+|||-|.|+|.++.++++. +|...++..|..+.-.+.|.+.+...+. ..++++...|+..
T Consensus 91 t~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi--~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 91 TPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI--GDNVTVTHRDVCG 168 (314)
T ss_pred cccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC--CcceEEEEeeccc
Confidence 345678889999999999999999999999999887 6778999999999999999999998876 6789999999987
Q ss_pred CCCC--CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEE
Q 026688 126 LPFA--SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG 167 (235)
Q Consensus 126 ~~~~--~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~ 167 (235)
..+. +..+|.|+ -.++.|..++..+.++|+.+|.-++
T Consensus 169 ~GF~~ks~~aDaVF-----LDlPaPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 169 SGFLIKSLKADAVF-----LDLPAPWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred CCccccccccceEE-----EcCCChhhhhhhhHHHhhhcCceEE
Confidence 6543 46788888 4578888889999999999875443
No 199
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.98 E-value=1.1e-08 Score=77.22 Aligned_cols=147 Identities=14% Similarity=0.077 Sum_probs=81.5
Q ss_pred HHHHhhcCC-CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCe-eEEecccccCC-
Q 026688 51 ELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF-LLVRADISRLP- 127 (235)
Q Consensus 51 ~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~d~~~~~- 127 (235)
..+++.... ..+.+|||+|||+|.++..+++.+. .+|+++|+++.++....+. ..++ .+...|+....
T Consensus 64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga-~~v~avD~~~~~l~~~l~~--------~~~v~~~~~~ni~~~~~ 134 (228)
T TIGR00478 64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGA-KEVYGVDVGYNQLAEKLRQ--------DERVKVLERTNIRYVTP 134 (228)
T ss_pred HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHhc--------CCCeeEeecCCcccCCH
Confidence 344444433 3577999999999999999999853 5899999999877652221 2222 23333443221
Q ss_pred ----CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHH-HHHHhHhhcCCceeecCHH
Q 026688 128 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR-LLRQNMMQISGSYTFLSER 202 (235)
Q Consensus 128 ----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 202 (235)
..-..+|+++++... .+..+.++|+| |.+++..-.. ..... .....-.-.....+..-.+
T Consensus 135 ~~~~~d~~~~DvsfiS~~~--------~l~~i~~~l~~-~~~~~L~KPq------FE~~~~~~~~~giv~~~~~~~~~~~ 199 (228)
T TIGR00478 135 ADIFPDFATFDVSFISLIS--------ILPELDLLLNP-NDLTLLFKPQ------FEAGREKKNKKGVVRDKEAIALALH 199 (228)
T ss_pred hHcCCCceeeeEEEeehHh--------HHHHHHHHhCc-CeEEEEcChH------hhhcHhhcCcCCeecCHHHHHHHHH
Confidence 111245655543332 47889999999 7766544211 10000 0000000000011122346
Q ss_pred HHHHHHHHcCCceeEEEee
Q 026688 203 EIEDLCRACGLVDFKCTRN 221 (235)
Q Consensus 203 ~~~~~l~~~Gf~~~~~~~~ 221 (235)
++...+.+.||.+......
T Consensus 200 ~~~~~~~~~~~~~~~~~~s 218 (228)
T TIGR00478 200 KVIDKGESPDFQEKKIIFS 218 (228)
T ss_pred HHHHHHHcCCCeEeeEEEC
Confidence 6677778889988766544
No 200
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.94 E-value=5.2e-10 Score=91.30 Aligned_cols=116 Identities=24% Similarity=0.361 Sum_probs=79.5
Q ss_pred CCHHHHHHHHhhcCC----CCCCeEEEecCCCchHHHHHHHcCCCceEEEEe-----CCHHHHHHHHHHhhhcCCCCCCC
Q 026688 45 GPEKEFELMKGYLKP----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALD-----YSENMLKQCYEFVQQESNFPKEN 115 (235)
Q Consensus 45 ~~~~~~~~i~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D-----~s~~~~~~a~~~~~~~~~~~~~~ 115 (235)
+....++.|.+.+.. ..-+.+||+|||+|.++..|..+. |+.+- ..+..++.|-++ + ..
T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~----V~t~s~a~~d~~~~qvqfaleR----G----vp 164 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN----VTTMSFAPNDEHEAQVQFALER----G----VP 164 (506)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC----ceEEEcccccCCchhhhhhhhc----C----cc
Confidence 344556666666644 234789999999999999999885 33333 334445444432 1 11
Q ss_pred eeEEecccccCCCCCCceeEEEecccccccCCh-HHHHHHHHHhccCCcEEEEEEecc
Q 026688 116 FLLVRADISRLPFASSSIDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 116 ~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~-~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
..+-..-...+|++++.||+|-|..++..+... ..+|-++-|+|+|||+++++.+..
T Consensus 165 a~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 165 AMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred hhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 112222345689999999999999887666433 578889999999999999877653
No 201
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.94 E-value=5.7e-09 Score=76.37 Aligned_cols=126 Identities=14% Similarity=0.177 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHhhcCC--CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688 44 PGPEKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121 (235)
Q Consensus 44 ~~~~~~~~~i~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (235)
|...+..+.+.+.+.. ..+.++||+-||+|.++...+-++. .+|+.+|.++..+...++++...+. ..++.+.+.
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~--~~~~~v~~~ 99 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGL--EDKIRVIKG 99 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEES
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCC--Ccceeeecc
Confidence 5567777788777765 3689999999999999999998885 5899999999999999999987654 335888888
Q ss_pred cccc-CC---CCCCceeEEEecccccccCChHHHHHHHH--HhccCCcEEEEEEecc
Q 026688 122 DISR-LP---FASSSIDAVHAGAAIHCWSSPSTGVAEIS--RVLRPGGVFVGTTYIV 172 (235)
Q Consensus 122 d~~~-~~---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~--~~L~pgG~li~~~~~~ 172 (235)
|... +. ....+||+|++.--...-......+..+. ..|+++|.+++.....
T Consensus 100 d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 100 DAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp SHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 8643 21 13578999997644432111256677776 7899999888877654
No 202
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.94 E-value=5.6e-08 Score=77.06 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=96.3
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688 47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 126 (235)
Q Consensus 47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 126 (235)
......+++.... +.+|||+-+|-|.++..+++.+.- .|+++|++|.+++..++++..++. ...+..+++|....
T Consensus 176 ~~ER~Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v--~~~v~~i~gD~rev 250 (341)
T COG2520 176 STERARVAELVKE--GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKV--EGRVEPILGDAREV 250 (341)
T ss_pred hHHHHHHHhhhcC--CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCc--cceeeEEeccHHHh
Confidence 3444566666665 899999999999999999999863 499999999999999999998875 34588999999887
Q ss_pred CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688 127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
......+|-|++... .+...++..+.+.+++||.+.+.+...+
T Consensus 251 ~~~~~~aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 251 APELGVADRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred hhccccCCEEEeCCC----CcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 644478999997443 3456789999999999999998887654
No 203
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1.5e-08 Score=77.27 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=76.6
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
....++.|.+.....++.+|||||+|.|.++..+++++. .|+++|+|+.+++..++.... ..+++++.+|+.+
T Consensus 15 d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk 87 (259)
T COG0030 15 DKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALK 87 (259)
T ss_pred CHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhc
Confidence 566788999999888889999999999999999999987 899999999999999998763 4689999999998
Q ss_pred CCCCCC-ceeEEEecccc
Q 026688 126 LPFASS-SIDAVHAGAAI 142 (235)
Q Consensus 126 ~~~~~~-~~D~i~~~~~l 142 (235)
.+++.- .++.|+++.-.
T Consensus 88 ~d~~~l~~~~~vVaNlPY 105 (259)
T COG0030 88 FDFPSLAQPYKVVANLPY 105 (259)
T ss_pred CcchhhcCCCEEEEcCCC
Confidence 876532 57888876443
No 204
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.90 E-value=1.4e-08 Score=81.05 Aligned_cols=131 Identities=16% Similarity=0.158 Sum_probs=89.0
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHc-------CCCceEEEEeCCHHHHHHHHHHhhhcCCCCC
Q 026688 41 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-------GLFSLVVALDYSENMLKQCYEFVQQESNFPK 113 (235)
Q Consensus 41 ~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-------~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 113 (235)
+.+.-|....+.+.+++...++.+|+|.+||+|.++..+.+. .....++|+|+++.++..|+-++...+.. .
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~-~ 104 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID-N 104 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH-C
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc-c
Confidence 345557888899999998877889999999999999888763 24568999999999999998776544321 2
Q ss_pred CCeeEEecccccCCCC--CCceeEEEeccccccc--C------C------------h-HHHHHHHHHhccCCcEEEEEEe
Q 026688 114 ENFLLVRADISRLPFA--SSSIDAVHAGAAIHCW--S------S------------P-STGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 114 ~~~~~~~~d~~~~~~~--~~~~D~i~~~~~l~~~--~------~------------~-~~~l~~~~~~L~pgG~li~~~~ 170 (235)
....+...|....+.. ...||+|+++--+... . + . ..++..+.+.|++||.+.+..+
T Consensus 105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 2345788887654432 4789999997433211 0 0 0 2588999999999999988877
Q ss_pred cc
Q 026688 171 IV 172 (235)
Q Consensus 171 ~~ 172 (235)
..
T Consensus 185 ~~ 186 (311)
T PF02384_consen 185 NG 186 (311)
T ss_dssp HH
T ss_pred ch
Confidence 53
No 205
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.90 E-value=1.6e-08 Score=81.87 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=58.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
.+.+.+.+++... +.+|||++||+|.++..+++... +|+++|+++.+++.+++++..++ ..++.+++.|+.+
T Consensus 185 ~l~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~---~~~v~~~~~d~~~ 256 (353)
T TIGR02143 185 KMLEWACEVTQGS-KGDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANN---IDNVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcC---CCcEEEEEcCHHH
Confidence 4455556665532 24799999999999999988764 99999999999999999998765 3478999999876
No 206
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.90 E-value=5.6e-09 Score=83.86 Aligned_cols=142 Identities=27% Similarity=0.365 Sum_probs=109.9
Q ss_pred cccccceecccccCCCCCCHHHHHHHHh-------hcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHH
Q 026688 28 FIYERGWRQNFVWGGFPGPEKEFELMKG-------YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ 100 (235)
Q Consensus 28 ~~~~~~w~~~~~~~~~~~~~~~~~~i~~-------~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~ 100 (235)
..|.+.|-..+..+.++......+.... .....+...++|+|||.|.....+.... .+.++|+|.++..+.+
T Consensus 70 dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~ 148 (364)
T KOG1269|consen 70 DLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFR 148 (364)
T ss_pred hhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHH
Confidence 4467778887766666544443332111 1123446689999999999998887654 4689999999988888
Q ss_pred HHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688 101 CYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 101 a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
+......... ..+..+...|+.+.|++++.||.+-+..+..|.++...++.+++++++|||..+..++..
T Consensus 149 ~~~~~~~~~l--~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 149 ANELAKKAYL--DNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred HHHHHHHHHh--hhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHH
Confidence 8876655443 334556889999999999999999999999999999999999999999999999877655
No 207
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.89 E-value=3.8e-08 Score=81.99 Aligned_cols=119 Identities=18% Similarity=0.161 Sum_probs=89.8
Q ss_pred HHHhhc--CCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-
Q 026688 52 LMKGYL--KPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP- 127 (235)
Q Consensus 52 ~i~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~- 127 (235)
.....+ .+.++.+|||+++|+|.-+.+++.... ...+++.|+++.-++..++++...+ ..++.+...|...+.
T Consensus 102 l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G---~~nv~v~~~D~~~~~~ 178 (470)
T PRK11933 102 LPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG---VSNVALTHFDGRVFGA 178 (470)
T ss_pred HHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCchhhhhh
Confidence 334445 667789999999999999999988743 4689999999999999999998876 456788888877542
Q ss_pred CCCCceeEEEecc------cccccCC----------------hHHHHHHHHHhccCCcEEEEEEeccC
Q 026688 128 FASSSIDAVHAGA------AIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 128 ~~~~~~D~i~~~~------~l~~~~~----------------~~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
.....||.|++.. ++..-++ ..++|..+.++|+|||.|+.++.+..
T Consensus 179 ~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 179 ALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred hchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 2235799999532 2221111 03678999999999999999988754
No 208
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.89 E-value=2e-08 Score=75.81 Aligned_cols=88 Identities=13% Similarity=0.172 Sum_probs=75.2
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688 47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 126 (235)
Q Consensus 47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 126 (235)
...++.|.+....+++..|||+|.|||.++..+.+.+. +|+++++++.|+....++...... ....++..+|+...
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp~--~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTPK--SGKLQVLHGDFLKT 119 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCCc--cceeeEEecccccC
Confidence 45677888888888899999999999999999999987 999999999999999998876533 45789999999887
Q ss_pred CCCCCceeEEEecc
Q 026688 127 PFASSSIDAVHAGA 140 (235)
Q Consensus 127 ~~~~~~~D~i~~~~ 140 (235)
++ ..||.|+.+.
T Consensus 120 d~--P~fd~cVsNl 131 (315)
T KOG0820|consen 120 DL--PRFDGCVSNL 131 (315)
T ss_pred CC--cccceeeccC
Confidence 64 3789999853
No 209
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.88 E-value=4.9e-08 Score=76.26 Aligned_cols=119 Identities=17% Similarity=0.083 Sum_probs=77.7
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688 49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 127 (235)
Q Consensus 49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 127 (235)
.+..+...+....+.+|||+|||+|..+..+.+..+ ..+++++|.|+.+++.++..+..... ...... ..++....
T Consensus 21 vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--~~~~~~-~~~~~~~~ 97 (274)
T PF09243_consen 21 VLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--NRNAEW-RRVLYRDF 97 (274)
T ss_pred HHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--cccchh-hhhhhccc
Confidence 344444444455678999999999988887776543 34799999999999999887655321 111111 11111101
Q ss_pred CCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEecc
Q 026688 128 FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 128 ~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
.+....|+|++.++|..+++. ..+++.+.+.+.+ .|+++++.-
T Consensus 98 ~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt 142 (274)
T PF09243_consen 98 LPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT 142 (274)
T ss_pred ccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence 112234999999999888773 3566666666665 888888764
No 210
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.86 E-value=1.5e-08 Score=79.17 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=73.6
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
..+++.+++.+...++..+||.+||.|..+..+++..+ .+.|+|+|.|+.+++.+++++.. ..++.+++.|+.+
T Consensus 5 pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~ 79 (296)
T PRK00050 5 PVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSN 79 (296)
T ss_pred cccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHH
Confidence 34567788888877788999999999999999999874 67999999999999999988754 2479999999987
Q ss_pred CC--CCC--CceeEEEecccc
Q 026688 126 LP--FAS--SSIDAVHAGAAI 142 (235)
Q Consensus 126 ~~--~~~--~~~D~i~~~~~l 142 (235)
+. .+. .++|.|++...+
T Consensus 80 l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 80 LKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHHHHHcCCCccCEEEECCCc
Confidence 53 112 279999986543
No 211
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=7.6e-08 Score=79.37 Aligned_cols=111 Identities=21% Similarity=0.304 Sum_probs=85.6
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
.+.+.+.+.+++...++.++||+=||.|.++..++++.. +|+|+|+++++++.|+++++.++ ..++.|..+++++
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~---i~N~~f~~~~ae~ 352 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANG---IDNVEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcC---CCcEEEEeCCHHH
Confidence 345666777888877788999999999999999998765 99999999999999999999887 4569999999988
Q ss_pred CCCC---CCceeEEEecccccccCCh-----HHHHHHHHHhccCCcEEEEEE
Q 026688 126 LPFA---SSSIDAVHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 126 ~~~~---~~~~D~i~~~~~l~~~~~~-----~~~l~~~~~~L~pgG~li~~~ 169 (235)
.... ...+|.|+. +.| ..+++.+.+ ++|...++++.
T Consensus 353 ~~~~~~~~~~~d~Vvv-------DPPR~G~~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 353 FTPAWWEGYKPDVVVV-------DPPRAGADREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred HhhhccccCCCCEEEE-------CCCCCCCCHHHHHHHHh-cCCCcEEEEeC
Confidence 6422 247899993 444 245555544 45656666654
No 212
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.82 E-value=2.9e-07 Score=68.48 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=84.6
Q ss_pred EEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-CCCCCCceeEEEeccccc
Q 026688 65 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASSSIDAVHAGAAIH 143 (235)
Q Consensus 65 vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~i~~~~~l~ 143 (235)
|.||||.-|.+...|.+++....++++|+++..++.|++.+...++ ..++++..+|-.+ ++ +.+..|.|+..++=.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l--~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL--EDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG---GGG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--cccEEEEECCcccccC-CCCCCCEEEEecCCH
Confidence 6899999999999999998777899999999999999999998876 5689999999654 33 223378888654432
Q ss_pred ccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688 144 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 219 (235)
Q Consensus 144 ~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 219 (235)
. -...+|......++....+++...+ ....++++|.++||.++...
T Consensus 78 ~--lI~~ILe~~~~~~~~~~~lILqP~~----------------------------~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 78 E--LIIEILEAGPEKLSSAKRLILQPNT----------------------------HAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp H--HHHHHHHHTGGGGTT--EEEEEESS-----------------------------HHHHHHHHHHTTEEEEEEE
T ss_pred H--HHHHHHHhhHHHhccCCeEEEeCCC----------------------------ChHHHHHHHHHCCCEEEEeE
Confidence 1 1235566666666655566653322 45789999999999876664
No 213
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=7.4e-09 Score=71.95 Aligned_cols=128 Identities=17% Similarity=0.088 Sum_probs=85.9
Q ss_pred CCCHHHHHHHHhhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688 44 PGPEKEFELMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 122 (235)
Q Consensus 44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d 122 (235)
|..+.+.-.++.......+++|||+|.|- |-.+..++...+...|...|-++..++..++....+......++.....+
T Consensus 12 pseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~ 91 (201)
T KOG3201|consen 12 PSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWL 91 (201)
T ss_pred ccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHH
Confidence 44444555556655556679999999995 66666677777788999999999999988876654422112233233333
Q ss_pred ccc--CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688 123 ISR--LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 123 ~~~--~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
... .......||+|++..++..-.-.....+.+...|+|.|.-++..+.
T Consensus 92 ~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPR 142 (201)
T KOG3201|consen 92 IWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPR 142 (201)
T ss_pred HhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCc
Confidence 322 1223458999999988873223357889999999999986665543
No 214
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.8e-08 Score=68.80 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=73.9
Q ss_pred hhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCcee
Q 026688 55 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 134 (235)
Q Consensus 55 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 134 (235)
+-.....+++++|+|||.|.++....-.. ...|.|+|++|++++.+++++.+.. .++++.++|+.+..+..+.||
T Consensus 42 ~TygdiEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeEfE----vqidlLqcdildle~~~g~fD 116 (185)
T KOG3420|consen 42 NTYGDIEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEEFE----VQIDLLQCDILDLELKGGIFD 116 (185)
T ss_pred hhhccccCcchhhhcCchhhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHHhh----hhhheeeeeccchhccCCeEe
Confidence 33444568999999999999996655444 3589999999999999999988763 367899999988766678899
Q ss_pred EEEecccccccCCh--HHHHHHHHHhcc
Q 026688 135 AVHAGAAIHCWSSP--STGVAEISRVLR 160 (235)
Q Consensus 135 ~i~~~~~l~~~~~~--~~~l~~~~~~L~ 160 (235)
.++.+--+..-..- .++++....+.+
T Consensus 117 taviNppFGTk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 117 TAVINPPFGTKKKGADMEFVSAALKVAS 144 (185)
T ss_pred eEEecCCCCcccccccHHHHHHHHHHHH
Confidence 99987665432111 244555544443
No 215
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.78 E-value=1.2e-07 Score=69.20 Aligned_cols=98 Identities=18% Similarity=0.205 Sum_probs=77.9
Q ss_pred eEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccccc
Q 026688 64 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 143 (235)
Q Consensus 64 ~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~ 143 (235)
+++|+|+|.|.-++.++=..|+.+++.+|....-+...+......+ ..++++.+..+++ +.....||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~---L~nv~v~~~R~E~-~~~~~~fd~v~aRAv-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG---LSNVEVINGRAEE-PEYRESFDVVTARAV-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH-TTTTT-EEEEEEESS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC---CCCEEEEEeeecc-cccCCCccEEEeehh--
Confidence 8999999999999999888899999999999877777666666555 3579999999988 444689999998544
Q ss_pred ccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 144 CWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 144 ~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
.....++.-+...+++||.+++.-
T Consensus 125 --~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 --APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 345678899999999999988754
No 216
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.75 E-value=8.5e-07 Score=70.36 Aligned_cols=115 Identities=14% Similarity=0.039 Sum_probs=79.6
Q ss_pred HHHhhcCCCCCCeEEEecCCCchHHHHHHHcC----CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-
Q 026688 52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL- 126 (235)
Q Consensus 52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~----~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~- 126 (235)
.|.+.+.. +..++|+|||+|.-+..+++.. ....++++|+|.+.++.+.+++..... +...+.-+++|+.+.
T Consensus 69 ~Ia~~i~~--~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l 145 (319)
T TIGR03439 69 DIAASIPS--GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGL 145 (319)
T ss_pred HHHHhcCC--CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHH
Confidence 34444443 5689999999998777665542 346799999999999999999872211 122344488888652
Q ss_pred ---CC--CCCceeEEEec-ccccccCChH--HHHHHHHH-hccCCcEEEEEE
Q 026688 127 ---PF--ASSSIDAVHAG-AAIHCWSSPS--TGVAEISR-VLRPGGVFVGTT 169 (235)
Q Consensus 127 ---~~--~~~~~D~i~~~-~~l~~~~~~~--~~l~~~~~-~L~pgG~li~~~ 169 (235)
+- ......++++. .++.+++..+ .+|+++.+ .|+|||.+++..
T Consensus 146 ~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 146 AWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred hhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 21 12335666655 4788877654 88999999 999999988854
No 217
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.74 E-value=2.6e-07 Score=68.31 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=90.4
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
.+..+.+..++....++++||+|.=+|..+..++...| +++|+++|++++..+.+.+..+..+. ...++++.++..+
T Consensus 59 ~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv--~~KI~~i~g~a~e 136 (237)
T KOG1663|consen 59 PDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV--DHKITFIEGPALE 136 (237)
T ss_pred hHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc--cceeeeeecchhh
Confidence 34444444455555578999999999999999888765 57999999999999999888777665 5689999988865
Q ss_pred C------CCCCCceeEEEecccccccCCh-HHHHHHHHHhccCCcEEEEEEe
Q 026688 126 L------PFASSSIDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 126 ~------~~~~~~~D~i~~~~~l~~~~~~-~~~l~~~~~~L~pgG~li~~~~ 170 (235)
. ....+.||.++. .|..+. .....++.+++++||.|++...
T Consensus 137 sLd~l~~~~~~~tfDfaFv----DadK~nY~~y~e~~l~Llr~GGvi~~DNv 184 (237)
T KOG1663|consen 137 SLDELLADGESGTFDFAFV----DADKDNYSNYYERLLRLLRVGGVIVVDNV 184 (237)
T ss_pred hHHHHHhcCCCCceeEEEE----ccchHHHHHHHHHHHhhcccccEEEEecc
Confidence 2 134578999995 444322 3778999999999999998653
No 218
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.74 E-value=3.7e-07 Score=71.90 Aligned_cols=144 Identities=16% Similarity=0.157 Sum_probs=102.6
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhh----hcCCCCCCCeeEEecccccC-CCCCCceeEE
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ----QESNFPKENFLLVRADISRL-PFASSSIDAV 136 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~----~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~i 136 (235)
..++|-+|.|.|-.+..+.+.-...+++-+|++|.|++.+++... ..+...+++++++..|+.+. .-..+.||.|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 578999999999999999876436799999999999999994332 23344467899999999774 2234689999
Q ss_pred EecccccccCCh----------HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHH
Q 026688 137 HAGAAIHCWSSP----------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 206 (235)
Q Consensus 137 ~~~~~l~~~~~~----------~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (235)
|.. ++|| ..+...+++.|+++|.+++.....- .....+ ..+..
T Consensus 370 IVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y-------------------~tp~vf---w~i~a 422 (508)
T COG4262 370 IVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY-------------------FTPRVF---WRIDA 422 (508)
T ss_pred EEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc-------------------cCCcee---eeehh
Confidence 953 3443 3678899999999999987654321 011111 23456
Q ss_pred HHHHcCCcee----EEEeeCcEEEEEEecC
Q 026688 207 LCRACGLVDF----KCTRNRGFVMFTATKP 232 (235)
Q Consensus 207 ~l~~~Gf~~~----~~~~~~~~~~~~~~k~ 232 (235)
.++++||.+. .+..++.+-++++.+-
T Consensus 423 Tik~AG~~~~Pyhv~VPTFGeWGf~l~~~~ 452 (508)
T COG4262 423 TIKSAGYRVWPYHVHVPTFGEWGFILAAPG 452 (508)
T ss_pred HHHhCcceeeeeEEecCcccccceeecccc
Confidence 7789998753 3346777777777754
No 219
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=98.73 E-value=2.2e-07 Score=71.56 Aligned_cols=162 Identities=17% Similarity=0.117 Sum_probs=100.0
Q ss_pred CHHHHHHHHhhcCC----CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHh---hhcC---------
Q 026688 46 PEKEFELMKGYLKP----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV---QQES--------- 109 (235)
Q Consensus 46 ~~~~~~~i~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~---~~~~--------- 109 (235)
....++.+..+.+. ..+-+||-.|||.|+++..++..++ .+-|-+.|--|+-...=.+ ...+
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh 208 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIH 208 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence 34445555555543 2357899999999999999999887 5555566555443221111 0000
Q ss_pred -------------------------CCCCCCeeEEecccccC-C--CCCCceeEEEecccccccCChHHHHHHHHHhccC
Q 026688 110 -------------------------NFPKENFLLVRADISRL-P--FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 161 (235)
Q Consensus 110 -------------------------~~~~~~~~~~~~d~~~~-~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p 161 (235)
...........+|+.+. + -..+.||+|+.++.+....+.-..++.+.++|+|
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~ 288 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKP 288 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccC
Confidence 00011233344666553 1 1224799999887777666777899999999999
Q ss_pred CcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688 162 GGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 219 (235)
Q Consensus 162 gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 219 (235)
||+.+=..+..-++...... .....-.++.+++..+....||++++..
T Consensus 289 GGvWiNlGPLlYHF~d~~g~----------~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 289 GGVWINLGPLLYHFEDTHGV----------ENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CcEEEeccceeeeccCCCCC----------cccccccccHHHHHHHHHhcCcEEEEee
Confidence 99888544433211110000 1112345789999999999999987765
No 220
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.73 E-value=5.7e-07 Score=65.10 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=93.6
Q ss_pred CCCHHHHHHHHhhcCC--CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688 44 PGPEKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121 (235)
Q Consensus 44 ~~~~~~~~~i~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (235)
|...+..+.+++.+.. ..+.++||+-+|+|.++...+-++. ..++.+|.+.......++++...+. ..+..++..
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~--~~~~~~~~~ 100 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGL--EGEARVLRN 100 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCC--ccceEEEee
Confidence 5567788888888876 5789999999999999999998875 5899999999999999999887654 357888888
Q ss_pred ccccC--CCCC-CceeEEEecccccc-cCChHHHHHH--HHHhccCCcEEEEEEec
Q 026688 122 DISRL--PFAS-SSIDAVHAGAAIHC-WSSPSTGVAE--ISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 122 d~~~~--~~~~-~~~D~i~~~~~l~~-~~~~~~~l~~--~~~~L~pgG~li~~~~~ 171 (235)
|.... .... +.||+|++.--++. +.+....+.. -...|+|+|.+++....
T Consensus 101 da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 101 DALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred cHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 88742 1222 25999998665551 1122233333 44679999999987654
No 221
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.70 E-value=3.9e-07 Score=73.80 Aligned_cols=74 Identities=26% Similarity=0.410 Sum_probs=57.0
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
...+.+.+.+++...+. .|||+-||.|.++..+++... +|+|+|+++.+++.|++++..++ ..+++|.+.+.++
T Consensus 182 ~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~---i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 182 NEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNG---IDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SHH
T ss_pred HHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcC---CCcceEEEeeccc
Confidence 34556677777876654 899999999999999999876 99999999999999999999876 4689998877654
No 222
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.69 E-value=7.8e-07 Score=71.21 Aligned_cols=135 Identities=17% Similarity=0.084 Sum_probs=97.1
Q ss_pred ccceecccccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCC-------------------------
Q 026688 31 ERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF------------------------- 85 (235)
Q Consensus 31 ~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~------------------------- 85 (235)
++.||.. .+..|..+.+...|+.+....++..++|.=||+|.+.+..+...++
T Consensus 163 kRGyR~~--~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~ 240 (381)
T COG0116 163 KRGYRVY--DGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKL 240 (381)
T ss_pred hcccccc--CCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHH
Confidence 4445533 2344556677778888888877889999999999999988776531
Q ss_pred -------c-------eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccc-cCCh--
Q 026688 86 -------S-------LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHC-WSSP-- 148 (235)
Q Consensus 86 -------~-------~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~-~~~~-- 148 (235)
+ .++|+|+++.+++.|+.++...+. ...|.|.+.|+..++.+.+.+|+|||+--..- +.+.
T Consensus 241 ~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv--~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~ 318 (381)
T COG0116 241 REEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGV--GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEAL 318 (381)
T ss_pred HHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCC--CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhh
Confidence 1 277999999999999999998876 56799999999987644478999999844321 2222
Q ss_pred -----HHHHHHHHHhccCCcEEEEEE
Q 026688 149 -----STGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 149 -----~~~l~~~~~~L~pgG~li~~~ 169 (235)
..+.+.+++.++--+..++++
T Consensus 319 v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 319 VAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 234455666666666666654
No 223
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.68 E-value=6.8e-07 Score=78.76 Aligned_cols=129 Identities=16% Similarity=0.044 Sum_probs=90.8
Q ss_pred CCCCCCHHHHHHHHhhcCC-CCCCeEEEecCCCchHHHHHHHcC------------------------------------
Q 026688 41 GGFPGPEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSG------------------------------------ 83 (235)
Q Consensus 41 ~~~~~~~~~~~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~------------------------------------ 83 (235)
...|..+.+...++..... .++..++|..||+|.+++..+...
T Consensus 169 ~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~ 248 (702)
T PRK11783 169 GEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERA 248 (702)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 3445667778878777665 457899999999999998775421
Q ss_pred ------CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC--CCceeEEEecccccc-cCC---hHHH
Q 026688 84 ------LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA--SSSIDAVHAGAAIHC-WSS---PSTG 151 (235)
Q Consensus 84 ------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~i~~~~~l~~-~~~---~~~~ 151 (235)
...+++|+|+++.+++.|++++...+. ...+.+..+|+.+.+.+ .+++|+|+++--+.. +.+ ...+
T Consensus 249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~--~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~l 326 (702)
T PRK11783 249 RAGLAELPSKFYGSDIDPRVIQAARKNARRAGV--AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIAL 326 (702)
T ss_pred hhcccccCceEEEEECCHHHHHHHHHHHHHcCC--CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHH
Confidence 113699999999999999999998775 34689999999886533 357999999854422 221 1233
Q ss_pred HHHHHHhc---cCCcEEEEEEec
Q 026688 152 VAEISRVL---RPGGVFVGTTYI 171 (235)
Q Consensus 152 l~~~~~~L---~pgG~li~~~~~ 171 (235)
.+.+.+.+ .+|+.+.+.+..
T Consensus 327 Y~~lg~~lk~~~~g~~~~llt~~ 349 (702)
T PRK11783 327 YSQLGRRLKQQFGGWNAALFSSS 349 (702)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCC
Confidence 33333333 488888776654
No 224
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.67 E-value=7.2e-08 Score=68.57 Aligned_cols=73 Identities=23% Similarity=0.271 Sum_probs=55.6
Q ss_pred CeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--CCCCc-eeEEEec
Q 026688 63 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSS-IDAVHAG 139 (235)
Q Consensus 63 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~-~D~i~~~ 139 (235)
..|+|+.||.|..++.+++.+. .|+++|+++..++.|+.++...+. ..++.++++|+.+.. ..... +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv--~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGV--ADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 3699999999999999999976 999999999999999999998875 568999999998742 22222 8999975
No 225
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=1.2e-06 Score=70.97 Aligned_cols=125 Identities=25% Similarity=0.277 Sum_probs=94.3
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCC--ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688 47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124 (235)
Q Consensus 47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 124 (235)
..........+.+.++.+|||+.++.|.=+.++++...+ ..|+++|.++.-+...++++...+ ..++.....|..
T Consensus 142 d~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG---~~nv~~~~~d~~ 218 (355)
T COG0144 142 DEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG---VRNVIVVNKDAR 218 (355)
T ss_pred CHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC---CCceEEEecccc
Confidence 344455566788889999999999999999999888653 457999999999999999998876 456778888876
Q ss_pred cCC---CCCCceeEEEecc------cccccCCh----------------HHHHHHHHHhccCCcEEEEEEeccCC
Q 026688 125 RLP---FASSSIDAVHAGA------AIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIVDG 174 (235)
Q Consensus 125 ~~~---~~~~~~D~i~~~~------~l~~~~~~----------------~~~l~~~~~~L~pgG~li~~~~~~~~ 174 (235)
..+ ....+||.|++.. ++.--++. .++|..+.++|||||.|+.++.+...
T Consensus 219 ~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 219 RLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred cccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 543 2223599999742 22111211 26899999999999999999988754
No 226
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.65 E-value=4.2e-07 Score=77.73 Aligned_cols=96 Identities=17% Similarity=0.138 Sum_probs=66.1
Q ss_pred CCCCCHHHHHHHHhhcCCC-------CCCeEEEecCCCchHHHHHHHcCC--------CceEEEEeCCHHHHHHHHHHhh
Q 026688 42 GFPGPEKEFELMKGYLKPV-------LGGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFVQ 106 (235)
Q Consensus 42 ~~~~~~~~~~~i~~~~~~~-------~~~~vLdiG~G~G~~~~~l~~~~~--------~~~v~~~D~s~~~~~~a~~~~~ 106 (235)
.+.-+....+.+.+.+... ...+|||.|||+|.++..+++..+ ...++|+|+++..+..++.++.
T Consensus 5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 3445677777777665321 346899999999999998877542 2578999999999999998876
Q ss_pred hcCCCCCCCeeEEecccccCC-----CCCCceeEEEecc
Q 026688 107 QESNFPKENFLLVRADISRLP-----FASSSIDAVHAGA 140 (235)
Q Consensus 107 ~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~i~~~~ 140 (235)
..+ ...+.+.+.|..... ...+.||+|+.+-
T Consensus 85 ~~~---~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNP 120 (524)
T TIGR02987 85 EFA---LLEINVINFNSLSYVLLNIESYLDLFDIVITNP 120 (524)
T ss_pred hcC---CCCceeeecccccccccccccccCcccEEEeCC
Confidence 543 123445555543211 1125799999973
No 227
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=98.61 E-value=6e-07 Score=67.72 Aligned_cols=153 Identities=12% Similarity=0.092 Sum_probs=94.6
Q ss_pred CCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688 45 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124 (235)
Q Consensus 45 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 124 (235)
.-+...+.++..+.. +.+|+|||||.--++..+....+.+.++|+|++..+++.....+...+ ...++...|+.
T Consensus 91 ~Ld~fY~~if~~~~~--p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~----~~~~~~v~Dl~ 164 (251)
T PF07091_consen 91 NLDEFYDEIFGRIPP--PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG----VPHDARVRDLL 164 (251)
T ss_dssp GHHHHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-----CEEEEEE-TT
T ss_pred hHHHHHHHHHhcCCC--CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC----CCcceeEeeee
Confidence 344455555554443 789999999999999988888778899999999999999998877653 46778888887
Q ss_pred cCCCCCCceeEEEecccccccCChH--HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHH
Q 026688 125 RLPFASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER 202 (235)
Q Consensus 125 ~~~~~~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (235)
..+ +....|+.++.-+++.+.... ..++-+..+=.| .++++.+...-...... +...-..
T Consensus 165 ~~~-~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~~~--~~vVSfPtrSL~gR~~g---------------m~~~y~~ 226 (251)
T PF07091_consen 165 SDP-PKEPADLALLLKTLPCLERQRRGAGLELLDALRSP--HVVVSFPTRSLGGRNKG---------------MEQTYSA 226 (251)
T ss_dssp TSH-TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSCES--EEEEEEES-------TT---------------HHHCHHH
T ss_pred ccC-CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhCCC--eEEEeccccccccCccc---------------cccCHHH
Confidence 754 457899999988888765442 223333333233 77777776531110001 1112235
Q ss_pred HHHHHHHHcCCceeEEEeeC
Q 026688 203 EIEDLCRACGLVDFKCTRNR 222 (235)
Q Consensus 203 ~~~~~l~~~Gf~~~~~~~~~ 222 (235)
+++.++...|+. ++...++
T Consensus 227 ~fe~~~~~~~~~-~~~~~~~ 245 (251)
T PF07091_consen 227 WFEALAAERGWI-VDRLTFG 245 (251)
T ss_dssp HHHHHCCTTCEE-EEEEEET
T ss_pred HHHHhcccCCce-eeeeecc
Confidence 677777777777 4444444
No 228
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.61 E-value=2.3e-08 Score=72.41 Aligned_cols=111 Identities=17% Similarity=0.119 Sum_probs=81.7
Q ss_pred CHHHHHHHHhhcCC---CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688 46 PEKEFELMKGYLKP---VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 122 (235)
Q Consensus 46 ~~~~~~~i~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d 122 (235)
+++..++++..-.+ ..+.++||+|+|.|..+..++.... +|++.+.|..|..+.+++ +.++ ..
T Consensus 94 Se~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk----------~ynV--l~ 159 (288)
T KOG3987|consen 94 SEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK----------NYNV--LT 159 (288)
T ss_pred cHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc----------CCce--ee
Confidence 45555555544322 2358999999999999999988765 899999999998887753 1112 12
Q ss_pred cccCCCCCCceeEEEecccccccCChHHHHHHHHHhccC-CcEEEEEEe
Q 026688 123 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP-GGVFVGTTY 170 (235)
Q Consensus 123 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p-gG~li~~~~ 170 (235)
..+..-.+-+||+|.|...+.-..+|-+.|+.+..+|+| +|.+++.-.
T Consensus 160 ~~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLV 208 (288)
T KOG3987|consen 160 EIEWLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALV 208 (288)
T ss_pred ehhhhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEE
Confidence 222211234799999999998888999999999999999 888877544
No 229
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.60 E-value=2.5e-07 Score=68.86 Aligned_cols=119 Identities=15% Similarity=0.114 Sum_probs=71.6
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhh-------hcCCCCCCCeeEE
Q 026688 47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-------QESNFPKENFLLV 119 (235)
Q Consensus 47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~-------~~~~~~~~~~~~~ 119 (235)
...+..+++.++..++...+|+|||.|......+-..+..+.+|+|+.+...+.|+.... ..+.. ..++++.
T Consensus 28 ~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~-~~~v~l~ 106 (205)
T PF08123_consen 28 PEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKR-PGKVELI 106 (205)
T ss_dssp HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----EEEEE
T ss_pred HHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc-cccceee
Confidence 345567777788888999999999999998877766544569999999988777764332 22221 3467888
Q ss_pred ecccccCCCC---CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEE
Q 026688 120 RADISRLPFA---SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG 167 (235)
Q Consensus 120 ~~d~~~~~~~---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~ 167 (235)
.+|+.+.+.. -...|+|+++..+.. ++....|.+....||+|..++-
T Consensus 107 ~gdfl~~~~~~~~~s~AdvVf~Nn~~F~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 107 HGDFLDPDFVKDIWSDADVVFVNNTCFD-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp CS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccCccccHhHhhhhcCCCEEEEeccccC-HHHHHHHHHHHhcCCCCCEEEE
Confidence 8998764311 135799999877642 2234556777788999877664
No 230
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=1.7e-06 Score=63.55 Aligned_cols=100 Identities=23% Similarity=0.306 Sum_probs=72.4
Q ss_pred CCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------CCC
Q 026688 60 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FAS 130 (235)
Q Consensus 60 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~ 130 (235)
.++.+|+|+|+-+|.+++.+++.. +...|+++|+.|- . +.+++.++.+|+...+ +..
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~-----~~~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------K-----PIPGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------c-----cCCCceEEeeeccCccHHHHHHHHcCC
Confidence 347999999999999999888874 3446999999772 1 1456899999997643 333
Q ss_pred CceeEEEecccc--------cccCCh---HHHHHHHHHhccCCcEEEEEEeccC
Q 026688 131 SSIDAVHAGAAI--------HCWSSP---STGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 131 ~~~D~i~~~~~l--------~~~~~~---~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
..+|+|++...- +|.... ..++.-+..+|+|||.+++-.+-..
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 457999975332 222111 3567778889999999999887653
No 231
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.58 E-value=2.6e-06 Score=63.48 Aligned_cols=140 Identities=16% Similarity=0.053 Sum_probs=96.4
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCc-eeEEEecc
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS-IDAVHAGA 140 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~D~i~~~~ 140 (235)
+.+++|||+|.|.=+..++=..|+.+|+-+|....-+...+......+ ..++++++.-+++... ... ||+|++..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~---L~nv~i~~~RaE~~~~-~~~~~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG---LENVEIVHGRAEEFGQ-EKKQYDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC---CCCeEEehhhHhhccc-ccccCcEEEeeh
Confidence 589999999999999998877888899999998766666665555544 4579999999988652 123 99999754
Q ss_pred cccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEe
Q 026688 141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR 220 (235)
Q Consensus 141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 220 (235)
+- +...+..-+...+++||.++..-...- . -...+.+......|+.+.++..
T Consensus 144 va----~L~~l~e~~~pllk~~g~~~~~k~~~~--------~----------------~e~~e~~~a~~~~~~~~~~~~~ 195 (215)
T COG0357 144 VA----SLNVLLELCLPLLKVGGGFLAYKGLAG--------K----------------DELPEAEKAILPLGGQVEKVFS 195 (215)
T ss_pred cc----chHHHHHHHHHhcccCCcchhhhHHhh--------h----------------hhHHHHHHHHHhhcCcEEEEEE
Confidence 33 345667889999999988764221110 0 0224566667777887766652
Q ss_pred e------CcEEEEEEecCC
Q 026688 221 N------RGFVMFTATKPS 233 (235)
Q Consensus 221 ~------~~~~~~~~~k~~ 233 (235)
. +...+++.+|.+
T Consensus 196 ~~~p~~~~~r~l~ii~~~k 214 (215)
T COG0357 196 LTVPELDGERHLVIIRKRK 214 (215)
T ss_pred eecCCCCCceEEEEEeccC
Confidence 2 224566666543
No 232
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.57 E-value=1.4e-07 Score=69.41 Aligned_cols=98 Identities=21% Similarity=0.316 Sum_probs=63.8
Q ss_pred CCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------CC--
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FA-- 129 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~-- 129 (235)
.+.++||+||++|.++..+.++. +...|+|+|+.+. .. ...+.+.++|+.+.. +.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~-----~~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DP-----LQNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS------TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------cc-----ccceeeeecccchhhHHHhhhhhcccc
Confidence 45899999999999999999987 4579999999875 00 234555556654311 11
Q ss_pred CCceeEEEecccccccCC----h-------HHHHHHHHHhccCCcEEEEEEecc
Q 026688 130 SSSIDAVHAGAAIHCWSS----P-------STGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~~~~----~-------~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
...+|+|++........+ . ...+.-+...|+|||.+++..+..
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 268999999874433222 1 244556678899999999877653
No 233
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.57 E-value=6.9e-07 Score=69.53 Aligned_cols=106 Identities=15% Similarity=0.170 Sum_probs=80.7
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
.....+.|.+.+...++..|||+|+|+|.++..+++.+. +++++|+++.+.+..++++.. ..+++++.+|+.+
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-TTT
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhh-----cccceeeecchhc
Confidence 567788999988877889999999999999999999984 999999999999999987763 5689999999998
Q ss_pred CCCCC---CceeEEEecccccccCChHHHHHHHHHhccC
Q 026688 126 LPFAS---SSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 161 (235)
Q Consensus 126 ~~~~~---~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p 161 (235)
+..+. .....|+++... ++ ...++.++...-+.
T Consensus 88 ~~~~~~~~~~~~~vv~NlPy-~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 88 WDLYDLLKNQPLLVVGNLPY-NI--SSPILRKLLELYRF 123 (262)
T ss_dssp SCGGGHCSSSEEEEEEEETG-TG--HHHHHHHHHHHGGG
T ss_pred cccHHhhcCCceEEEEEecc-cc--hHHHHHHHhhcccc
Confidence 76543 345566665433 22 23556666654333
No 234
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.57 E-value=1.3e-06 Score=70.92 Aligned_cols=104 Identities=18% Similarity=0.157 Sum_probs=82.7
Q ss_pred CCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-CCCCceeEEEec
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVHAG 139 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~i~~~ 139 (235)
+.+|||+.||+|..++.++...+ -.+|+++|+++..++.+++++..++ ..++.+.+.|+...- .....||+|.+.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~---~~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS---VENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 35899999999999999998742 2589999999999999999998765 336888999987642 123579999975
Q ss_pred ccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688 140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
- + ..+..+++.+.+.+++||.|.++....
T Consensus 122 P-f---Gs~~~fld~al~~~~~~glL~vTaTD~ 150 (374)
T TIGR00308 122 P-F---GTPAPFVDSAIQASAERGLLLVTATDT 150 (374)
T ss_pred C-C---CCcHHHHHHHHHhcccCCEEEEEeccc
Confidence 4 2 345678999999999999999985443
No 235
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.55 E-value=2.4e-06 Score=61.52 Aligned_cols=103 Identities=30% Similarity=0.473 Sum_probs=74.0
Q ss_pred EEEecCCCchHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEeccccc--CCCCC-CceeEEEec
Q 026688 65 IIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISR--LPFAS-SSIDAVHAG 139 (235)
Q Consensus 65 vLdiG~G~G~~~~~l~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d~~~--~~~~~-~~~D~i~~~ 139 (235)
++|+|||+|... .+.+.... ..++++|+++.++..++..... . ... +.+...|... .++.. ..||++ +.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A---GLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c---CCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 999999999976 33333322 3788999999999885554322 1 112 5777788765 56655 489999 55
Q ss_pred ccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688 140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
....+..+....+.++.+.++|+|.+++......
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 126 LLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 4444433377899999999999999999887654
No 236
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.53 E-value=1.1e-06 Score=69.05 Aligned_cols=93 Identities=13% Similarity=0.136 Sum_probs=76.3
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
...+++.+++.+...++..++|.-+|.|..+..+++..+.++|+|+|.++.+++.+++++... ..++.++..++.+
T Consensus 5 ~pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~----~~R~~~i~~nF~~ 80 (305)
T TIGR00006 5 QSVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF----EGRVVLIHDNFAN 80 (305)
T ss_pred cchhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc----CCcEEEEeCCHHH
Confidence 445678888888888889999999999999999998865689999999999999999988654 3579999999987
Q ss_pred CC-----CCCCceeEEEecccc
Q 026688 126 LP-----FASSSIDAVHAGAAI 142 (235)
Q Consensus 126 ~~-----~~~~~~D~i~~~~~l 142 (235)
+. ....++|.|++...+
T Consensus 81 l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 81 FFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred HHHHHHhcCCCcccEEEEeccC
Confidence 43 223579999986543
No 237
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.53 E-value=7e-07 Score=64.39 Aligned_cols=115 Identities=18% Similarity=0.174 Sum_probs=82.9
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC
Q 026688 49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 128 (235)
Q Consensus 49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 128 (235)
+.+.+...=..-.+++|||+|+|+|--++..++.+. ..|+..|++|......+-+.+.++ ..+.+...|...
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~ang----v~i~~~~~d~~g--- 138 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANG----VSILFTHADLIG--- 138 (218)
T ss_pred HHHHHhcCccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhcc----ceeEEeeccccC---
Confidence 334444333334579999999999999999888874 589999999988888887777663 467888888765
Q ss_pred CCCceeEEEecccccccCChHHHHHHHHHhccCCc-EEEEEEecc
Q 026688 129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG-VFVGTTYIV 172 (235)
Q Consensus 129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG-~li~~~~~~ 172 (235)
....||+++...+++.-+...+.+. +++.|+..| .+++-++.+
T Consensus 139 ~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 139 SPPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred CCcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 3578999999998876555567777 555555544 555544443
No 238
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.52 E-value=1.8e-06 Score=60.73 Aligned_cols=101 Identities=20% Similarity=0.209 Sum_probs=68.7
Q ss_pred CCCCeEEEecCCCchHHHHHHH-----cCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCcee
Q 026688 60 VLGGNIIDASCGSGLFSRIFAK-----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 134 (235)
Q Consensus 60 ~~~~~vLdiG~G~G~~~~~l~~-----~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 134 (235)
.+..+|+|+|||.|+++..++. . +..+|+++|.++..++.+.++..........++.+...+...... ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 5678999999999999999988 4 677999999999999999988876542112456666665544321 35567
Q ss_pred EEEecccccccCChHHHHHHHHHhccCCcEEEE
Q 026688 135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG 167 (235)
Q Consensus 135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~ 167 (235)
+++..+....+. ..+++.+.+ |+...++
T Consensus 102 ~~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 102 ILVGLHACGDLS--DRALRLFIR---PNARFLV 129 (141)
T ss_pred EEEEeecccchH--HHHHHHHHH---cCCCEEE
Confidence 777655554332 244555544 5444443
No 239
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.52 E-value=1.3e-06 Score=67.47 Aligned_cols=108 Identities=14% Similarity=0.167 Sum_probs=66.1
Q ss_pred CCCeEEEecCCCchHHH-HHHHc-CCCceEEEEeCCHHHHHHHHHHhh-hcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688 61 LGGNIIDASCGSGLFSR-IFAKS-GLFSLVVALDYSENMLKQCYEFVQ-QESNFPKENFLLVRADISRLPFASSSIDAVH 137 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~-~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 137 (235)
.+.+|+=||||+=-++. .+++. ++.+.|+++|+++..++.+++... ..++ ..++.|.++|....+..-..||+|+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L--~~~m~f~~~d~~~~~~dl~~~DvV~ 197 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL--SKRMSFITADVLDVTYDLKEYDVVF 197 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH---SSEEEEES-GGGG-GG----SEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc--cCCeEEEecchhccccccccCCEEE
Confidence 35699999999855444 44443 456789999999999999998776 2233 5689999999987654446899999
Q ss_pred ecccccc-cCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 138 AGAAIHC-WSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 138 ~~~~l~~-~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
......- -.+..+++.++.+.++||+.+++-..
T Consensus 198 lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 198 LAALVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp E-TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred EhhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 7765542 23557999999999999998887643
No 240
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.44 E-value=7.5e-05 Score=55.51 Aligned_cols=161 Identities=12% Similarity=0.124 Sum_probs=96.9
Q ss_pred CHHHHHHHHhh---cCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec
Q 026688 46 PEKEFELMKGY---LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 121 (235)
Q Consensus 46 ~~~~~~~i~~~---~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (235)
..++...+..- +...++.+||-+|+.+|....++.+- ++...|++++.|+...+..-..... -.|+--+..
T Consensus 55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-----R~NIiPIl~ 129 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-----RPNIIPILE 129 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----STTEEEEES
T ss_pred hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-----CCceeeeec
Confidence 45566666544 44567899999999999999999886 5578999999999655444433332 357877888
Q ss_pred ccccCC---CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceee
Q 026688 122 DISRLP---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF 198 (235)
Q Consensus 122 d~~~~~---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (235)
|+.... .--+..|+|++.-. +-.+.+-++.++...||+||.+++......-.....| ..
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p-~~--------------- 191 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADP-EE--------------- 191 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSH-HH---------------
T ss_pred cCCChHHhhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCH-HH---------------
Confidence 986521 12358999985322 1122245678888999999999998754311000011 00
Q ss_pred cCHHHHHHHHHHcCCceeEEEeeC----cEEEEEEe
Q 026688 199 LSEREIEDLCRACGLVDFKCTRNR----GFVMFTAT 230 (235)
Q Consensus 199 ~~~~~~~~~l~~~Gf~~~~~~~~~----~~~~~~~~ 230 (235)
...+-.+.|++.||+..+..... ...+++++
T Consensus 192 -vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 192 -VFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp -HHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEE
T ss_pred -HHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEE
Confidence 01223456677899987776433 34566655
No 241
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.42 E-value=2.7e-06 Score=66.82 Aligned_cols=120 Identities=24% Similarity=0.254 Sum_probs=91.5
Q ss_pred HHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--
Q 026688 51 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 127 (235)
Q Consensus 51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-- 127 (235)
......+.+.++.+|||+.++.|.-+.++++... ...+++.|+++.-+...++++...+ ..++.....|.....
T Consensus 75 ~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g---~~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 75 QLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG---VFNVIVINADARKLDPK 151 (283)
T ss_dssp HHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSEEEEESHHHHHHHH
T ss_pred ccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC---CceEEEEeecccccccc
Confidence 4445567788899999999999999998888754 5799999999999999999988776 456777777876641
Q ss_pred CCCCceeEEEecc------cccccCCh----------------HHHHHHHHHhc----cCCcEEEEEEeccC
Q 026688 128 FASSSIDAVHAGA------AIHCWSSP----------------STGVAEISRVL----RPGGVFVGTTYIVD 173 (235)
Q Consensus 128 ~~~~~~D~i~~~~------~l~~~~~~----------------~~~l~~~~~~L----~pgG~li~~~~~~~ 173 (235)
.....||.|++.. ++..-++. .++|+.+.+.+ +|||+++.++.+..
T Consensus 152 ~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 152 KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 2234699999742 22222221 26799999999 99999999998753
No 242
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.37 E-value=9.9e-07 Score=63.14 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=77.3
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 141 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~ 141 (235)
...+.|+|+|+|.++...++... +|++++.+|.....|++++...+ ..++.++.+|+....+ ...|+|+|-..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g---~~n~evv~gDA~~y~f--e~ADvvicEml 105 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPG---DVNWEVVVGDARDYDF--ENADVVICEML 105 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCC---CcceEEEecccccccc--cccceeHHHHh
Confidence 47999999999999998887754 99999999999999999876544 6789999999988776 56799997432
Q ss_pred cccc-CC-hHHHHHHHHHhccCCcEEEE
Q 026688 142 IHCW-SS-PSTGVAEISRVLRPGGVFVG 167 (235)
Q Consensus 142 l~~~-~~-~~~~l~~~~~~L~pgG~li~ 167 (235)
-..+ .. .-.+++.+...|+.++.++=
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 1111 11 23678888889999888873
No 243
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.34 E-value=3.2e-05 Score=57.15 Aligned_cols=138 Identities=14% Similarity=0.035 Sum_probs=99.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688 48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 127 (235)
Q Consensus 48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 127 (235)
..+..+.+++.. +..+.||||.-|++..++.+.++...+++.|+++..++.|.+++...++ ..+++...+|-...=
T Consensus 5 ~RL~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l--~~~i~vr~~dgl~~l 80 (226)
T COG2384 5 KRLTTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL--SERIDVRLGDGLAVL 80 (226)
T ss_pred HHHHHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC--cceEEEeccCCcccc
Confidence 345677777776 4559999999999999999999988999999999999999999998876 568888888885422
Q ss_pred CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHH
Q 026688 128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 207 (235)
Q Consensus 128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (235)
-+++.+|+|+..++=.. -...+|.+-.+.|+.=-.+++. |+ ....+++++
T Consensus 81 ~~~d~~d~ivIAGMGG~--lI~~ILee~~~~l~~~~rlILQ-Pn---------------------------~~~~~LR~~ 130 (226)
T COG2384 81 ELEDEIDVIVIAGMGGT--LIREILEEGKEKLKGVERLILQ-PN---------------------------IHTYELREW 130 (226)
T ss_pred CccCCcCEEEEeCCcHH--HHHHHHHHhhhhhcCcceEEEC-CC---------------------------CCHHHHHHH
Confidence 23457899986544221 1134566666655532233331 11 245788999
Q ss_pred HHHcCCceeEEE
Q 026688 208 CRACGLVDFKCT 219 (235)
Q Consensus 208 l~~~Gf~~~~~~ 219 (235)
|..++|.+....
T Consensus 131 L~~~~~~I~~E~ 142 (226)
T COG2384 131 LSANSYEIKAET 142 (226)
T ss_pred HHhCCceeeeee
Confidence 999999875554
No 244
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.34 E-value=4.1e-06 Score=57.86 Aligned_cols=85 Identities=18% Similarity=0.259 Sum_probs=59.6
Q ss_pred eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--CCCCceeEEEeccccc-c-----cCCh---HHHHHHH
Q 026688 87 LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAGAAIH-C-----WSSP---STGVAEI 155 (235)
Q Consensus 87 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i~~~~~l~-~-----~~~~---~~~l~~~ 155 (235)
+|+++|+.+++++.+++++...+. ..+++++..+-+.+. .+.+.+|+++++...- . ...+ ...++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~--~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL--EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC--CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 589999999999999999998765 457999888887764 2334799999875431 1 1222 3789999
Q ss_pred HHhccCCcEEEEEEeccC
Q 026688 156 SRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 156 ~~~L~pgG~li~~~~~~~ 173 (235)
.++|+|||.+.++....+
T Consensus 79 l~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHEEEEEEEEEEE--ST
T ss_pred HHhhccCCEEEEEEeCCC
Confidence 999999999999987754
No 245
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.32 E-value=9.6e-06 Score=58.52 Aligned_cols=153 Identities=20% Similarity=0.181 Sum_probs=94.1
Q ss_pred HHHhhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHH----HHHHHH-hhhcCCCCCCCeeEEeccccc
Q 026688 52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENML----KQCYEF-VQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~----~~a~~~-~~~~~~~~~~~~~~~~~d~~~ 125 (235)
+++.+...+++.+|+|+=.|.|.++..+... ++...|+++-..+... +..+.+ +..... ..+.+.+..+...
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~--~aN~e~~~~~~~A 116 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV--YANVEVIGKPLVA 116 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh--hhhhhhhCCcccc
Confidence 4455667788999999999999999988876 5666777765543211 101100 000000 2234444444444
Q ss_pred CCCCCCceeEEEeccccccc-------CChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceee
Q 026688 126 LPFASSSIDAVHAGAAIHCW-------SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF 198 (235)
Q Consensus 126 ~~~~~~~~D~i~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (235)
+. +.+..|+++.....|.+ ....++...+.+.|||||.+++.++.......... ......
T Consensus 117 ~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d------------t~~~~r 183 (238)
T COG4798 117 LG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD------------TITLHR 183 (238)
T ss_pred cC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh------------hhhhcc
Confidence 44 34666777754333222 22358899999999999999999987653222111 112345
Q ss_pred cCHHHHHHHHHHcCCceeEEE
Q 026688 199 LSEREIEDLCRACGLVDFKCT 219 (235)
Q Consensus 199 ~~~~~~~~~l~~~Gf~~~~~~ 219 (235)
.+...+.+..+.+||+..-..
T Consensus 184 i~~a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 184 IDPAVVIAEVEAAGFKLEAES 204 (238)
T ss_pred cChHHHHHHHHhhcceeeeee
Confidence 778888999999999865443
No 246
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=0.00036 Score=50.96 Aligned_cols=159 Identities=11% Similarity=0.090 Sum_probs=103.6
Q ss_pred CHHHHHHHHhh---cCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688 46 PEKEFELMKGY---LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 122 (235)
Q Consensus 46 ~~~~~~~i~~~---~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d 122 (235)
...+...|+.- ++..++.+||-+|+.+|....++.+-.....+++++.|+......-..... -+|+--+..|
T Consensus 58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-----R~Ni~PIL~D 132 (231)
T COG1889 58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-----RPNIIPILED 132 (231)
T ss_pred hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-----CCCceeeecc
Confidence 45566666554 345678999999999999999999886677999999998776665554443 3467778888
Q ss_pred cccCC---CCCCceeEEEecccccccCChH---HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCce
Q 026688 123 ISRLP---FASSSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSY 196 (235)
Q Consensus 123 ~~~~~---~~~~~~D~i~~~~~l~~~~~~~---~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (235)
+.... .-.+..|+|+ ..+.+|. -+..++...|++||.++++.-...-..+..| ..-
T Consensus 133 A~~P~~Y~~~Ve~VDviy-----~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp-~~v------------ 194 (231)
T COG1889 133 ARKPEKYRHLVEKVDVIY-----QDVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADP-EEV------------ 194 (231)
T ss_pred cCCcHHhhhhcccccEEE-----EecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCH-HHH------------
Confidence 86521 1235688887 4455553 4677889999999988887655421111111 000
Q ss_pred eecCHHHHHHHHHHcCCceeEEEeeC----cEEEEEEec
Q 026688 197 TFLSEREIEDLCRACGLVDFKCTRNR----GFVMFTATK 231 (235)
Q Consensus 197 ~~~~~~~~~~~l~~~Gf~~~~~~~~~----~~~~~~~~k 231 (235)
..+-...|++.||++.+..... ...+++++.
T Consensus 195 ----f~~ev~kL~~~~f~i~e~~~LePye~DH~~i~~~~ 229 (231)
T COG1889 195 ----FKDEVEKLEEGGFEILEVVDLEPYEKDHALIVAKY 229 (231)
T ss_pred ----HHHHHHHHHhcCceeeEEeccCCcccceEEEEEee
Confidence 1222345678899987776433 335555543
No 247
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.29 E-value=9.1e-06 Score=59.59 Aligned_cols=113 Identities=15% Similarity=0.289 Sum_probs=82.2
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--C
Q 026688 50 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--P 127 (235)
Q Consensus 50 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~ 127 (235)
++...+.+. .++.+||+||.|.|.....+.++-| .+-+.++..|..+++.+..--.. ..++....+--++. .
T Consensus 91 Mha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~e----k~nViil~g~WeDvl~~ 164 (271)
T KOG1709|consen 91 MHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWRE----KENVIILEGRWEDVLNT 164 (271)
T ss_pred HHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhccccc----ccceEEEecchHhhhcc
Confidence 344444444 4489999999999988888877765 46778999999998887643221 33555555444332 3
Q ss_pred CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688 128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 168 (235)
Q Consensus 128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~ 168 (235)
++++.||-|.....-++..+...+.+.+.++|||+|.+-+-
T Consensus 165 L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 165 LPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred ccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 56788999998776677777778889999999999988653
No 248
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.25 E-value=5.5e-06 Score=60.13 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=74.5
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCC----CCCeeEEecccccCCCCCCceeEEE
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP----KENFLLVRADISRLPFASSSIDAVH 137 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~D~i~ 137 (235)
.-.+.|||||.|.++..+...+|+..+.|++|.-..-+..++++......+ ..++.+...+....- .+-|..-.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l--pn~f~kgq 138 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL--PNFFEKGQ 138 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc--cchhhhcc
Confidence 457999999999999999999999999999999989998888886543111 234555555544321 12222222
Q ss_pred ecccccccCChH-------------HHHHHHHHhccCCcEEEEEEecc
Q 026688 138 AGAAIHCWSSPS-------------TGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 138 ~~~~l~~~~~~~-------------~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
+.-.++.+++|. ..+.+..=+|++||.++..+-..
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 333334455542 46778888999999998766543
No 249
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.24 E-value=2.3e-05 Score=64.48 Aligned_cols=103 Identities=26% Similarity=0.418 Sum_probs=86.0
Q ss_pred CeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccc
Q 026688 63 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI 142 (235)
Q Consensus 63 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l 142 (235)
-++|.+|||.-.++..+.+.+ ...++.+|+|+-.++....+.... ..-..+...|...+.+++++||+|+.-..+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtl 124 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTL 124 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCcc
Confidence 399999999999999999887 358999999999888887765422 345789999999999999999999999988
Q ss_pred cccCCh----------HHHHHHHHHhccCCcEEEEEEe
Q 026688 143 HCWSSP----------STGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 143 ~~~~~~----------~~~l~~~~~~L~pgG~li~~~~ 170 (235)
+++-.. ...+.++.++++|||+++..+.
T Consensus 125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 125 DALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 876432 2457899999999999888777
No 250
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.23 E-value=6.4e-06 Score=57.98 Aligned_cols=59 Identities=24% Similarity=0.253 Sum_probs=49.9
Q ss_pred eEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 64 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 64 ~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
++||+|||.|..+..+++.++..+++++|+++.+.+.+++++..++. .++.+....+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~---~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL---PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC---CcEEEEEeeeeC
Confidence 48999999999999999998877899999999999999999877642 357777766654
No 251
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=9.2e-05 Score=53.25 Aligned_cols=100 Identities=15% Similarity=0.257 Sum_probs=67.4
Q ss_pred CCCCeEEEecCCCchHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec-ccccC--------CCC
Q 026688 60 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRL--------PFA 129 (235)
Q Consensus 60 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~--------~~~ 129 (235)
.|+.+|||+||.+|.+++-..++. |+..|.|+|+-. +.. ...+.++++ |+.+. .++
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p-----~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEP-----PEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccC-----CCCcccccccccCCHHHHHHHHHhCC
Confidence 458999999999999999887774 888999999843 111 334555555 65542 145
Q ss_pred CCceeEEEecccccc----cCCh-------HHHHHHHHHhccCCcEEEEEEeccC
Q 026688 130 SSSIDAVHAGAAIHC----WSSP-------STGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~----~~~~-------~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
....|+|++...-.- +.|- ..++.-....+.|+|.++.-.+..+
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 678899987543211 1111 1344455677889999999888764
No 252
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=4.6e-05 Score=57.05 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=94.1
Q ss_pred HHHhhcC-CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEecccccCC--
Q 026688 52 LMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISRLP-- 127 (235)
Q Consensus 52 ~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d~~~~~-- 127 (235)
.+++... ..+++.+||+|+.||.++..+.+++. ..|+++|..-..+..--+. +++ +.+...|+..+.
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~--------d~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRN--------DPRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhc--------CCcEEEEecCChhhCCHH
Confidence 3333333 34589999999999999999999975 5899999976554432221 334 344556665442
Q ss_pred -CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHH-hHhhcCCceeecCHHHHH
Q 026688 128 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ-NMMQISGSYTFLSEREIE 205 (235)
Q Consensus 128 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 205 (235)
+. +..|+++|.-++.. ...+|..+..+++|++-++...-... ..-..... .-.-.....+..-...+.
T Consensus 140 ~~~-~~~d~~v~DvSFIS---L~~iLp~l~~l~~~~~~~v~LvKPQF------Eagr~~v~kkGvv~d~~~~~~v~~~i~ 209 (245)
T COG1189 140 DFT-EKPDLIVIDVSFIS---LKLILPALLLLLKDGGDLVLLVKPQF------EAGREQVGKKGVVRDPKLHAEVLSKIE 209 (245)
T ss_pred Hcc-cCCCeEEEEeehhh---HHHHHHHHHHhcCCCceEEEEecchh------hhhhhhcCcCceecCcchHHHHHHHHH
Confidence 22 37899998877764 34778899999999998876543221 11000000 000000112223457788
Q ss_pred HHHHHcCCceeEEEe
Q 026688 206 DLCRACGLVDFKCTR 220 (235)
Q Consensus 206 ~~l~~~Gf~~~~~~~ 220 (235)
+++.+.||.+.....
T Consensus 210 ~~~~~~g~~~~gl~~ 224 (245)
T COG1189 210 NFAKELGFQVKGLIK 224 (245)
T ss_pred HHHhhcCcEEeeeEc
Confidence 899999999887763
No 253
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.20 E-value=3.3e-06 Score=62.05 Aligned_cols=90 Identities=22% Similarity=0.232 Sum_probs=70.8
Q ss_pred CHHHHHHHHhhcCCC-CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688 46 PEKEFELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 124 (235)
++.....++.....- ....|+|.-||-|..+..++.+++ .|+++|+||.-+.-|++++...|. ..+++|+++|+.
T Consensus 78 pe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI--~~rItFI~GD~l 153 (263)
T KOG2730|consen 78 PEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGV--PDRITFICGDFL 153 (263)
T ss_pred cHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecC--CceeEEEechHH
Confidence 556666665554321 357899999999999999999988 999999999999999999998887 459999999998
Q ss_pred cC----CCCCCceeEEEec
Q 026688 125 RL----PFASSSIDAVHAG 139 (235)
Q Consensus 125 ~~----~~~~~~~D~i~~~ 139 (235)
++ .+....+|+|+..
T Consensus 154 d~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 154 DLASKLKADKIKYDCVFLS 172 (263)
T ss_pred HHHHHHhhhhheeeeeecC
Confidence 74 3444556677753
No 254
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.18 E-value=9.4e-07 Score=61.17 Aligned_cols=57 Identities=25% Similarity=0.290 Sum_probs=45.5
Q ss_pred eEEecccccCCCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccC
Q 026688 117 LLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 117 ~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
.+++.-....+|.+++.|+|.+-++++|+.-. ..++++|++.|||||+|-++.+...
T Consensus 32 dlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 32 DLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred chhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 33333333456778999999999999998754 3789999999999999999988753
No 255
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.16 E-value=6.7e-05 Score=58.76 Aligned_cols=98 Identities=13% Similarity=0.037 Sum_probs=54.4
Q ss_pred CCHHHHHHHHhhcCCCC-----CCeEEEecCCCchH-HHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-CCCCCCCee
Q 026688 45 GPEKEFELMKGYLKPVL-----GGNIIDASCGSGLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFL 117 (235)
Q Consensus 45 ~~~~~~~~i~~~~~~~~-----~~~vLdiG~G~G~~-~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~ 117 (235)
.....+.++.+++.... ..++||||+|.... ....++. ...+++|.|+++..++.|++.+..+ ++ ..+|+
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L--~~~I~ 157 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNL--ESRIE 157 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T---TTTEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhcccc--ccceE
Confidence 33445566666665322 35899999998644 3333332 2459999999999999999999987 55 56787
Q ss_pred EEeccccc-----CCCCCCceeEEEeccccccc
Q 026688 118 LVRADISR-----LPFASSSIDAVHAGAAIHCW 145 (235)
Q Consensus 118 ~~~~d~~~-----~~~~~~~~D~i~~~~~l~~~ 145 (235)
+....-.. +..+.+.||+++|+--++.-
T Consensus 158 l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 158 LRKQKNPDNIFDGIIQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp EEE--ST-SSTTTSTT--S-EEEEEE-----SS
T ss_pred EEEcCCccccchhhhcccceeeEEecCCccccC
Confidence 76554322 11234689999998877743
No 256
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.14 E-value=3.9e-05 Score=60.82 Aligned_cols=87 Identities=17% Similarity=0.240 Sum_probs=64.6
Q ss_pred CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688 60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 139 (235)
Q Consensus 60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~ 139 (235)
.++.++||+||++|.++..+.+++. .|++||..+ +-... .. .+++.....|......+.+.+|.++|.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~-l~~~L----~~-----~~~V~h~~~d~fr~~p~~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP-MAQSL----MD-----TGQVEHLRADGFKFRPPRKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechh-cCHhh----hC-----CCCEEEEeccCcccCCCCCCCCEEEEe
Confidence 4689999999999999999999976 999999654 22222 11 567888888876643235789999985
Q ss_pred ccccccCChHHHHHHHHHhccCC
Q 026688 140 AAIHCWSSPSTGVAEISRVLRPG 162 (235)
Q Consensus 140 ~~l~~~~~~~~~l~~~~~~L~pg 162 (235)
.+ ..|.++.+.+.+-+..|
T Consensus 278 mv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 278 MV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred cc----cCHHHHHHHHHHHHhcC
Confidence 55 34677777777777665
No 257
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=98.12 E-value=1.1e-05 Score=63.42 Aligned_cols=91 Identities=16% Similarity=0.281 Sum_probs=67.1
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688 47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 126 (235)
Q Consensus 47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 126 (235)
..+++.+++.+...++...+|.-.|.|..+..+++..+.++++|+|.++.+++.+++++... ..++.++..++.++
T Consensus 6 PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~----~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 6 PVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF----DDRFIFIHGNFSNL 81 (310)
T ss_dssp -TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC----CTTEEEEES-GGGH
T ss_pred cccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc----cceEEEEeccHHHH
Confidence 34567788888888899999999999999999999988899999999999999999887754 46899999999875
Q ss_pred C-----C-CCCceeEEEeccc
Q 026688 127 P-----F-ASSSIDAVHAGAA 141 (235)
Q Consensus 127 ~-----~-~~~~~D~i~~~~~ 141 (235)
. . ....+|.|++...
T Consensus 82 ~~~l~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 82 DEYLKELNGINKVDGILFDLG 102 (310)
T ss_dssp HHHHHHTTTTS-EEEEEEE-S
T ss_pred HHHHHHccCCCccCEEEEccc
Confidence 3 2 3458999997543
No 258
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.11 E-value=1.1e-06 Score=58.58 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=42.5
Q ss_pred EEecCCCchHHHHHHHcCCC---ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--CCCCCceeEEEecc
Q 026688 66 IDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHAGA 140 (235)
Q Consensus 66 LdiG~G~G~~~~~l~~~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~i~~~~ 140 (235)
||+|+..|..+..+++..+. .+++++|..+. .+.+++.+...+. ..+++++.++..+. .++.+++|+++...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~--~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL--SDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------GGG---BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC--CCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 68999999998888775432 26999999985 2233333332222 45799999999653 23347899999755
Q ss_pred cccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 141 AIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
.-. .......+..+.+.|+|||.+++.+
T Consensus 78 ~H~-~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 DHS-YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCC-HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 321 2233467889999999999998754
No 259
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=1.5e-05 Score=65.86 Aligned_cols=75 Identities=13% Similarity=0.231 Sum_probs=64.3
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
.+.+...+-++.....+..+||+-||||.++..+++... .|+|++++++.++.|+++...++ ..+.+|+++-+++
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~Ng---isNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQING---ISNATFIVGQAED 442 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcC---ccceeeeecchhh
Confidence 445566777888888889999999999999999998755 99999999999999999988876 5689999996555
No 260
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=2.5e-05 Score=53.82 Aligned_cols=121 Identities=13% Similarity=0.157 Sum_probs=87.7
Q ss_pred CCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688 43 FPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 122 (235)
Q Consensus 43 ~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d 122 (235)
.|...+.++.+++++..++.++.+|+|+|.|......++.+ -...+|++++|-.+..++-+.-..+. ..++.|...|
T Consensus 54 VpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~--~k~trf~Rkd 130 (199)
T KOG4058|consen 54 VPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGC--AKSTRFRRKD 130 (199)
T ss_pred cCccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhc--ccchhhhhhh
Confidence 35677889999999998888999999999999999888876 23789999999999888876655554 5678899999
Q ss_pred cccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688 123 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 123 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
+-+..+ ..|..++.+..-.-+++. -.++..-+..+..++.--+.
T Consensus 131 lwK~dl--~dy~~vviFgaes~m~dL---e~KL~~E~p~nt~vvacRFP 174 (199)
T KOG4058|consen 131 LWKVDL--RDYRNVVIFGAESVMPDL---EDKLRTELPANTRVVACRFP 174 (199)
T ss_pred hhhccc--cccceEEEeehHHHHhhh---HHHHHhhCcCCCeEEEEecC
Confidence 987664 345555544333333333 34555566677777654443
No 261
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.94 E-value=0.00014 Score=56.44 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=76.8
Q ss_pred CCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688 45 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 123 (235)
Q Consensus 45 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 123 (235)
.-..++..+.+.+...+++..+|.--|.|..+..++.+++. +.++++|.++.+++.|++++... ..++.++..++
T Consensus 7 HipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~----~~r~~~v~~~F 82 (314)
T COG0275 7 HIPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF----DGRVTLVHGNF 82 (314)
T ss_pred ccchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc----CCcEEEEeCcH
Confidence 34567788889999999999999999999999999999864 56999999999999999998775 45899999988
Q ss_pred ccCC-----CCCCceeEEEeccc
Q 026688 124 SRLP-----FASSSIDAVHAGAA 141 (235)
Q Consensus 124 ~~~~-----~~~~~~D~i~~~~~ 141 (235)
.++. ....++|.|++...
T Consensus 83 ~~l~~~l~~~~i~~vDGiL~DLG 105 (314)
T COG0275 83 ANLAEALKELGIGKVDGILLDLG 105 (314)
T ss_pred HHHHHHHHhcCCCceeEEEEecc
Confidence 7643 22457888887543
No 262
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=6.3e-05 Score=59.32 Aligned_cols=112 Identities=17% Similarity=0.088 Sum_probs=72.4
Q ss_pred CCCCCCeEEEecCCCchHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc----ccCCCCCCc
Q 026688 58 KPVLGGNIIDASCGSGLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI----SRLPFASSS 132 (235)
Q Consensus 58 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~~~ 132 (235)
..-.+++|||+|.|.|..+.++..-.|+. .++.++.|+..-+.......... .........|+ ..+| +.+.
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~---t~~td~r~s~vt~dRl~lp-~ad~ 185 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS---TEKTDWRASDVTEDRLSLP-AADL 185 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc---cccCCCCCCccchhccCCC-ccce
Confidence 44457889999999999998888877753 57778888866665554333211 11222233333 2233 2356
Q ss_pred eeEEEecccccccCCh---HHHHHHHHHhccCCcEEEEEEeccC
Q 026688 133 IDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 133 ~D~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
|++++...-+-+..+. ...++.+..++.|||.|+|.+.+-.
T Consensus 186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 7777665544444333 3578999999999999999998643
No 263
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.86 E-value=0.0016 Score=52.46 Aligned_cols=161 Identities=20% Similarity=0.082 Sum_probs=81.7
Q ss_pred CCCCCCeEEEecCCCchHHHHHHHc----------------CCCceEEEEeCCHHHHHHHHHHhhhcC--CCCCCC--ee
Q 026688 58 KPVLGGNIIDASCGSGLFSRIFAKS----------------GLFSLVVALDYSENMLKQCYEFVQQES--NFPKEN--FL 117 (235)
Q Consensus 58 ~~~~~~~vLdiG~G~G~~~~~l~~~----------------~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~--~~ 117 (235)
.....-+|+|+||.+|..+..+... -|..+|+--|+-..--...-+.+.... .....+ +.
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 3344689999999999998866442 123578888863321111111111100 000112 23
Q ss_pred EEecccccCCCCCCceeEEEecccccccCCh--------------------------------H-------HHHHHHHHh
Q 026688 118 LVRADISRLPFASSSIDAVHAGAAIHCWSSP--------------------------------S-------TGVAEISRV 158 (235)
Q Consensus 118 ~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~--------------------------------~-------~~l~~~~~~ 158 (235)
-+.+.+..--+|.++.|++++..++|++... . .+|+.=.+-
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 3456665544678999999999999987420 0 223334456
Q ss_pred ccCCcEEEEEEeccCCCccc----chhHHHHHHhHhh--------------cCCceeecCHHHHHHHHHHcC-CceeEE
Q 026688 159 LRPGGVFVGTTYIVDGPFNL----IPFSRLLRQNMMQ--------------ISGSYTFLSEREIEDLCRACG-LVDFKC 218 (235)
Q Consensus 159 L~pgG~li~~~~~~~~~~~~----~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~G-f~~~~~ 218 (235)
|+|||.+++.....+..... ......+...+.. +.-+..+.+.+|++..+++.| |.+.+.
T Consensus 173 Lv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~l 251 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKL 251 (334)
T ss_dssp EEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEE
T ss_pred eccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEE
Confidence 88999999999888762221 1223333332221 222356788999999999987 554333
No 264
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.85 E-value=0.0022 Score=49.92 Aligned_cols=161 Identities=9% Similarity=-0.059 Sum_probs=96.1
Q ss_pred HhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCC-HHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-----
Q 026688 54 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS-ENMLKQCYEFVQQESNFPKENFLLVRADISR-L----- 126 (235)
Q Consensus 54 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~----- 126 (235)
.+.+.. ....|+.+|||.-.-...+.. .+ .+..+|++ |++++.-++.+...+..+..+.+++..|+.+ +
T Consensus 75 ~~~~~~-g~~qvV~LGaGlDTr~~Rl~~-~~--~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~ 150 (260)
T TIGR00027 75 LAAVAA-GIRQVVILGAGLDTRAYRLPW-PD--GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALA 150 (260)
T ss_pred HHHHhc-CCcEEEEeCCccccHHHhcCC-CC--CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHH
Confidence 344443 346799999998665555421 22 35566666 5566666666665433334578888889862 1
Q ss_pred --CCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHh--hcCCceeecC
Q 026688 127 --PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM--QISGSYTFLS 200 (235)
Q Consensus 127 --~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 200 (235)
.+.....-++++-+++.+++.. .++++.+.+...||+.+++....................... ....-...++
T Consensus 151 ~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (260)
T TIGR00027 151 AAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGID 230 (260)
T ss_pred hCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCC
Confidence 1222345577777888888755 478899988888999998876553111000011111111111 1122234578
Q ss_pred HHHHHHHHHHcCCceeEE
Q 026688 201 EREIEDLCRACGLVDFKC 218 (235)
Q Consensus 201 ~~~~~~~l~~~Gf~~~~~ 218 (235)
++++..+|+..||.....
T Consensus 231 ~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 231 RADVAEWLAERGWRASEH 248 (260)
T ss_pred hhhHHHHHHHCCCeeecC
Confidence 899999999999997654
No 265
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.81 E-value=0.00047 Score=55.84 Aligned_cols=114 Identities=23% Similarity=0.238 Sum_probs=85.5
Q ss_pred hcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---CCCC
Q 026688 56 YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASS 131 (235)
Q Consensus 56 ~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~ 131 (235)
.+.+.++.+|||+.+-+|.-+.+++.. .....|++.|.+..-+...+.++...+ ..+..+...|..+.| ++.
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG---v~ntiv~n~D~~ef~~~~~~~- 311 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG---VTNTIVSNYDGREFPEKEFPG- 311 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC---CCceEEEccCcccccccccCc-
Confidence 346778999999999998777777664 234689999999999999999988876 456777888886654 333
Q ss_pred ceeEEEecccccc------------cCC----------hHHHHHHHHHhccCCcEEEEEEeccC
Q 026688 132 SIDAVHAGAAIHC------------WSS----------PSTGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 132 ~~D~i~~~~~l~~------------~~~----------~~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
+||-|++..-..- ... ..++|..+.+++++||+|+.++.+..
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 8999996422211 010 13678889999999999999998764
No 266
>PRK10742 putative methyltransferase; Provisional
Probab=97.79 E-value=0.00031 Score=53.48 Aligned_cols=92 Identities=14% Similarity=0.032 Sum_probs=68.0
Q ss_pred HHHHhhcCCCCCC--eEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcC----CCC--CCCeeEEecc
Q 026688 51 ELMKGYLKPVLGG--NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----NFP--KENFLLVRAD 122 (235)
Q Consensus 51 ~~i~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~--~~~~~~~~~d 122 (235)
+.+...+..+++. +|||.-+|+|..+..++.++. +|+++|.++.+....+..+.... ... ..+++++..|
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 4566666655555 899999999999999999875 79999999988888777665520 000 1468888888
Q ss_pred cccC-CCCCCceeEEEecccccc
Q 026688 123 ISRL-PFASSSIDAVHAGAAIHC 144 (235)
Q Consensus 123 ~~~~-~~~~~~~D~i~~~~~l~~ 144 (235)
..+. .-....||+|++.-.+.|
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCC
Confidence 8663 212347999998877765
No 267
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.74 E-value=0.00033 Score=51.80 Aligned_cols=107 Identities=13% Similarity=0.124 Sum_probs=57.2
Q ss_pred CCCeEEEecCCCchHHHHHHHc----CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-------CC
Q 026688 61 LGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-------FA 129 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~----~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~ 129 (235)
++..|+|+|.-.|..+..++.. +..++|+|+|++...... +.+...+. ..+++++.+|..+.. ..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~--~~rI~~i~Gds~d~~~~~~v~~~~ 107 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPM--SPRITFIQGDSIDPEIVDQVRELA 107 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG------TTEEEEES-SSSTHHHHTSGSS-
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccc--cCceEEEECCCCCHHHHHHHHHhh
Confidence 3689999999988877766543 367899999996433222 22222232 468999999987632 11
Q ss_pred -CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688 130 -SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 130 -~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
.....+|+ -.+-|...+..+.|+....+++||+++++.+...
T Consensus 108 ~~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 108 SPPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp ---SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred ccCCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 12333444 3444444566788899999999999999877653
No 268
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.67 E-value=0.0046 Score=46.82 Aligned_cols=103 Identities=17% Similarity=0.101 Sum_probs=59.8
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-CCC-CCCceeEEEe
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPF-ASSSIDAVHA 138 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~~D~i~~ 138 (235)
.+++||-+|=+. -.|.+++-.+...+|+.+|+++.+++..++.....++ +++....|+.+ +|. -.++||+++.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl----~i~~~~~DlR~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL----PIEAVHYDLRDPLPEELRGKFDVFFT 118 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTTSS-BSEEEE
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC----ceEEEEecccccCCHHHhcCCCEEEe
Confidence 478999999554 3444444445557999999999999999998888753 48999999976 331 2479999996
Q ss_pred cccccccCChHHHHHHHHHhccCCc-EEEEEE
Q 026688 139 GAAIHCWSSPSTGVAEISRVLRPGG-VFVGTT 169 (235)
Q Consensus 139 ~~~l~~~~~~~~~l~~~~~~L~pgG-~li~~~ 169 (235)
.-.-- .....-++.+....|+..| ..++..
T Consensus 119 DPPyT-~~G~~LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 119 DPPYT-PEGLKLFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp ---SS-HHHHHHHHHHHHHTB-STT-EEEEEE
T ss_pred CCCCC-HHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 32111 1112467888888998766 544433
No 269
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.64 E-value=0.0033 Score=51.30 Aligned_cols=158 Identities=14% Similarity=0.066 Sum_probs=87.2
Q ss_pred CCeEEEecCCCchHHHHHHHc---------------CCCceEEEEeCCHHHHHHHHHHhhhc--------C-C--CCCCC
Q 026688 62 GGNIIDASCGSGLFSRIFAKS---------------GLFSLVVALDYSENMLKQCYEFVQQE--------S-N--FPKEN 115 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~---------------~~~~~v~~~D~s~~~~~~a~~~~~~~--------~-~--~~~~~ 115 (235)
..+|+|+|||+|.++..+... .|..+|..-|+-..--...-+.+... . + .....
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 578999999999877654321 23467777776432222111111110 0 0 00011
Q ss_pred --eeEEecccccCCCCCCceeEEEecccccccCCh--------------------------------------HHHHHHH
Q 026688 116 --FLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--------------------------------------STGVAEI 155 (235)
Q Consensus 116 --~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~--------------------------------------~~~l~~~ 155 (235)
+.-+.+.+..--+|.++.+++++.+++|++... ..+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223333333678999999999999987531 0233444
Q ss_pred HHhccCCcEEEEEEeccCCCcccc------hhHHHHHHhH--------------hhcCCceeecCHHHHHHHHHHcC-Cc
Q 026688 156 SRVLRPGGVFVGTTYIVDGPFNLI------PFSRLLRQNM--------------MQISGSYTFLSEREIEDLCRACG-LV 214 (235)
Q Consensus 156 ~~~L~pgG~li~~~~~~~~~~~~~------~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~G-f~ 214 (235)
.+-|.|||.+++....+....... .+...+...+ ..+.-+....+.+|+++.+++.| |.
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~ 303 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA 303 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence 556889999999988775321111 1100011111 11233356778999999999998 55
Q ss_pred eeEEE
Q 026688 215 DFKCT 219 (235)
Q Consensus 215 ~~~~~ 219 (235)
+.+..
T Consensus 304 I~~le 308 (386)
T PLN02668 304 IDKLE 308 (386)
T ss_pred eeeeE
Confidence 54444
No 270
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.54 E-value=0.0025 Score=54.14 Aligned_cols=130 Identities=20% Similarity=0.121 Sum_probs=92.8
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC---C-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCe
Q 026688 41 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG---L-FSLVVALDYSENMLKQCYEFVQQESNFPKENF 116 (235)
Q Consensus 41 ~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 116 (235)
+.+..|....+.+.+.+.+.+..+|.|..||+|.+.....+.. . ...++|.|+++.....|+-++-.++... .+
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~--~~ 243 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG--DA 243 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc--cc
Confidence 5667788899999999988777899999999998877555432 1 2679999999999999999887776421 34
Q ss_pred eEEecccccCCC-----CCCceeEEEeccccc---cc-----------------C----Ch-HHHHHHHHHhccCCcEEE
Q 026688 117 LLVRADISRLPF-----ASSSIDAVHAGAAIH---CW-----------------S----SP-STGVAEISRVLRPGGVFV 166 (235)
Q Consensus 117 ~~~~~d~~~~~~-----~~~~~D~i~~~~~l~---~~-----------------~----~~-~~~l~~~~~~L~pgG~li 166 (235)
....+|....|. ....||.|+++--+. +. . .. ..++.++...|+|||...
T Consensus 244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa 323 (489)
T COG0286 244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA 323 (489)
T ss_pred cccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence 555555544332 235699999863331 10 0 01 478999999999998776
Q ss_pred EEEecc
Q 026688 167 GTTYIV 172 (235)
Q Consensus 167 ~~~~~~ 172 (235)
++.+..
T Consensus 324 ivl~~g 329 (489)
T COG0286 324 IVLPDG 329 (489)
T ss_pred EEecCC
Confidence 666554
No 271
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.49 E-value=0.0043 Score=45.95 Aligned_cols=121 Identities=20% Similarity=0.151 Sum_probs=68.5
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC--CceEEEEeCCHHHHHHHHHHhhhcC----------------
Q 026688 48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL--FSLVVALDYSENMLKQCYEFVQQES---------------- 109 (235)
Q Consensus 48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~v~~~D~s~~~~~~a~~~~~~~~---------------- 109 (235)
++++.-+.++....+-++.|..||+|+++.-+.-.+. -..|++-|+++.+++.|++++....
T Consensus 38 Ei~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e 117 (246)
T PF11599_consen 38 EIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYE 117 (246)
T ss_dssp HHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHH
Confidence 3344444555555678999999999998876654432 2479999999999998887653211
Q ss_pred -----------------------CCCCCCeeEEecccccCC-----CCCCceeEEEecccccccCCh---------HHHH
Q 026688 110 -----------------------NFPKENFLLVRADISRLP-----FASSSIDAVHAGAAIHCWSSP---------STGV 152 (235)
Q Consensus 110 -----------------------~~~~~~~~~~~~d~~~~~-----~~~~~~D~i~~~~~l~~~~~~---------~~~l 152 (235)
..+.....+.+.|+.+.. ......|+|+...-..+..+. .+++
T Consensus 118 ~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml 197 (246)
T PF11599_consen 118 QYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQML 197 (246)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHH
Confidence 101234667888887621 112346999986544333221 4789
Q ss_pred HHHHHhccCCcEEEEE
Q 026688 153 AEISRVLRPGGVFVGT 168 (235)
Q Consensus 153 ~~~~~~L~pgG~li~~ 168 (235)
..+..+|.+++++.++
T Consensus 198 ~~l~~vLp~~sVV~v~ 213 (246)
T PF11599_consen 198 NSLAPVLPERSVVAVS 213 (246)
T ss_dssp HHHHCCS-TT-EEEEE
T ss_pred HHHHhhCCCCcEEEEe
Confidence 9999999555555553
No 272
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.43 E-value=0.0009 Score=51.79 Aligned_cols=110 Identities=11% Similarity=0.113 Sum_probs=80.8
Q ss_pred CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-CCCCCCCeeEEecccccC--CCCCCceeEE
Q 026688 60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRL--PFASSSIDAV 136 (235)
Q Consensus 60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~--~~~~~~~D~i 136 (235)
..++++|-||.|.|.......++.....+.-+|++...++..++.+... .....+++.+..+|-..+ ..+.+.||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 3478999999999999998888754568999999999999999887642 122256788888886543 2346899999
Q ss_pred EecccccccCCh----HHHHHHHHHhccCCcEEEEEE
Q 026688 137 HAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 137 ~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~ 169 (235)
+....=.-.+.. ..++..+.+.||++|++....
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 953221111111 367889999999999998754
No 273
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.40 E-value=0.00083 Score=55.82 Aligned_cols=99 Identities=22% Similarity=0.280 Sum_probs=65.4
Q ss_pred CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCC----HHHHHHHHHHhhhcCCCCCCCeeEEecccc-cCCCCCCc
Q 026688 58 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS----ENMLKQCYEFVQQESNFPKENFLLVRADIS-RLPFASSS 132 (235)
Q Consensus 58 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s----~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~ 132 (235)
....-+.|+|+.+|.|.++.+|.+.. |..+..- +..+...-. .|+ .=...|-. .++.-...
T Consensus 362 ~~~~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~~~~ntL~vIyd----RGL------IG~yhDWCE~fsTYPRT 427 (506)
T PF03141_consen 362 KWGRIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPVSGPNTLPVIYD----RGL------IGVYHDWCEAFSTYPRT 427 (506)
T ss_pred cccceeeeeeecccccHHHHHhccCC----ceEEEecccCCCCcchhhhh----ccc------chhccchhhccCCCCcc
Confidence 33345789999999999999997652 4443332 233333222 111 11222332 23434589
Q ss_pred eeEEEecccccccCCh---HHHHHHHHHhccCCcEEEEEEe
Q 026688 133 IDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 133 ~D~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~li~~~~ 170 (235)
||+|-+.+++....+. ..++-++-|+|+|||.++|-+.
T Consensus 428 YDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 428 YDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 9999999988877654 5889999999999999998664
No 274
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.37 E-value=0.004 Score=49.86 Aligned_cols=99 Identities=18% Similarity=0.144 Sum_probs=68.0
Q ss_pred cCCCCCCeEEEecCC-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc-cccCCCCCCcee
Q 026688 57 LKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-ISRLPFASSSID 134 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~D 134 (235)
.+..|+.+|+-+|+| .|..+..+++.. .++|+++|.+++-++.|++.-+ -.++... ......-.+.+|
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGA---------d~~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGA---------DHVINSSDSDALEAVKEIAD 231 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCC---------cEEEEcCCchhhHHhHhhCc
Confidence 345678999999997 357777777743 2699999999999999987522 2223322 211111123499
Q ss_pred EEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688 135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
+|+..-. ...+....+.|++||.+++.....
T Consensus 232 ~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 232 AIIDTVG-------PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred EEEECCC-------hhhHHHHHHHHhcCCEEEEECCCC
Confidence 9995433 345788999999999999987663
No 275
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.28 E-value=0.015 Score=45.63 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=52.1
Q ss_pred eEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC--CCceeEEEeccc
Q 026688 64 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA--SSSIDAVHAGAA 141 (235)
Q Consensus 64 ~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~i~~~~~ 141 (235)
+++|+-||.|.++.-+.+.+. ..+.++|+++..++..+.+... . +...|+.+.... ...+|+++....
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~~~--------~-~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANFPN--------K-LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhCCC--------C-CccCccccCchhhcCCCCCEEEeCCC
Confidence 689999999999999988763 4688999999999888876532 1 455677665321 356999997654
Q ss_pred cc
Q 026688 142 IH 143 (235)
Q Consensus 142 l~ 143 (235)
+.
T Consensus 72 Cq 73 (275)
T cd00315 72 CQ 73 (275)
T ss_pred Ch
Confidence 43
No 276
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.28 E-value=0.0011 Score=50.04 Aligned_cols=91 Identities=20% Similarity=0.191 Sum_probs=51.7
Q ss_pred HHHhhcCCCCC--CeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHH---HHhhhcCCC---CCCCeeEEeccc
Q 026688 52 LMKGYLKPVLG--GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY---EFVQQESNF---PKENFLLVRADI 123 (235)
Q Consensus 52 ~i~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~---~~~~~~~~~---~~~~~~~~~~d~ 123 (235)
.+...+...++ .+|||.-+|.|..+..++..|. +|+++|-||-+....+ +++...... ...+++++.+|.
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 45555554433 4999999999999999987765 9999999986555444 333322110 013789999998
Q ss_pred cc-CCCCCCceeEEEecccccc
Q 026688 124 SR-LPFASSSIDAVHAGAAIHC 144 (235)
Q Consensus 124 ~~-~~~~~~~~D~i~~~~~l~~ 144 (235)
.+ +..+..+||+|.+.-++.+
T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCHCCCHSS--SEEEE--S---
T ss_pred HHHHhhcCCCCCEEEECCCCCC
Confidence 77 3445689999999877765
No 277
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=97.27 E-value=0.0011 Score=46.68 Aligned_cols=101 Identities=15% Similarity=0.241 Sum_probs=63.5
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHH-HHHHhhhcCCCCCCCeeEEeccccc-CCCCCCceeEEEec
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ-CYEFVQQESNFPKENFLLVRADISR-LPFASSSIDAVHAG 139 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~-a~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~i~~~ 139 (235)
+++++-+|+..=..=....+.+. +++..+|.++--++. .+.++ ..+...|+.. ..-..++||.+.|.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA-~~iltveyn~L~i~~~~~dr~----------ssi~p~df~~~~~~y~~~fD~~as~ 70 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGA-AKILTVEYNKLEIQEEFRDRL----------SSILPVDFAKNWQKYAGSFDFAASF 70 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCC-ceEEEEeecccccCccccccc----------ccccHHHHHHHHHHhhccchhhhee
Confidence 46778888876544444444543 578888876522211 11111 1122233321 11224789999999
Q ss_pred ccccccC-----Ch------HHHHHHHHHhccCCcEEEEEEeccC
Q 026688 140 AAIHCWS-----SP------STGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 140 ~~l~~~~-----~~------~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
.+++|+. || .+.+.++.++|||||.+++..+...
T Consensus 71 ~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 71 SSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred chhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 9998872 33 3778899999999999999998875
No 278
>PRK11524 putative methyltransferase; Provisional
Probab=97.22 E-value=0.0018 Score=51.06 Aligned_cols=61 Identities=15% Similarity=0.131 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh
Q 026688 44 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 107 (235)
Q Consensus 44 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 107 (235)
.-+.++.+.++.... .++..|||.-||+|..+....+.+. +++|+|++++.++.|++++..
T Consensus 192 ~kP~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 192 QKPEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred cChHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence 345677888777666 3488999999999999999988877 999999999999999999864
No 279
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.01 Score=47.57 Aligned_cols=114 Identities=19% Similarity=0.172 Sum_probs=77.7
Q ss_pred cCCCCCCeEEEecCCCchHHHHHHHcCCC----ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----
Q 026688 57 LKPVLGGNIIDASCGSGLFSRIFAKSGLF----SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----- 127 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~----~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 127 (235)
+...|+.+|||+.+-+|.-+..+.+.... ..|++-|.++.-+....+.+...+ ..++.+...|+...|
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~---~~~~~v~~~~~~~~p~~~~~ 227 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP---SPNLLVTNHDASLFPNIYLK 227 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC---Ccceeeecccceeccccccc
Confidence 35667899999999999888877776432 379999999877776666653322 334555555554332
Q ss_pred ----CCCCceeEEEecc------cccccCCh-----------------HHHHHHHHHhccCCcEEEEEEeccC
Q 026688 128 ----FASSSIDAVHAGA------AIHCWSSP-----------------STGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 128 ----~~~~~~D~i~~~~------~l~~~~~~-----------------~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
.....||-|+|.- ++.+-++. ..++....++|++||.++.++.+..
T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 1234699999742 22222111 2678899999999999999998764
No 280
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=97.15 E-value=0.0036 Score=45.41 Aligned_cols=113 Identities=13% Similarity=0.086 Sum_probs=78.9
Q ss_pred HhhcCCCCCCeEEEecCCCchHHHHHHHc----CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--
Q 026688 54 KGYLKPVLGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 127 (235)
Q Consensus 54 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-- 127 (235)
.+++-...+..|+|+|.-.|..+..++.. +...+|.++|+|-..+..+..+ .+++.|+.++-.+..
T Consensus 62 Qellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--------~p~i~f~egss~dpai~ 133 (237)
T COG3510 62 QELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--------VPDILFIEGSSTDPAIA 133 (237)
T ss_pred HHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--------CCCeEEEeCCCCCHHHH
Confidence 33443344789999999888777665543 5457999999986554443322 457899999886632
Q ss_pred -----CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCC
Q 026688 128 -----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG 174 (235)
Q Consensus 128 -----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 174 (235)
..++..-+.+|..+-|+.....+.++.+.++|..|-++++.+.+.+.
T Consensus 134 eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 134 EQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred HHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 22333445556677777776778889999999999999998877654
No 281
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.13 E-value=0.0069 Score=46.34 Aligned_cols=108 Identities=14% Similarity=0.040 Sum_probs=67.2
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHh-----hhcCCCCCCCeeEEeccccc---CCCCCCc
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV-----QQESNFPKENFLLVRADISR---LPFASSS 132 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~~~~~~~~~d~~~---~~~~~~~ 132 (235)
...+||++|+|+|--+..++... ..+|...|... .+...+... ..... ...+.+...+=.. .....+.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~--g~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPK-VVENLKFNRDKNNIALNQL--GGSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchh-hHHHHHHhhhhhhhhhhhc--CCceeEEEEecCCcccHhhccCC
Confidence 36789999999997666666543 45888888753 222222221 11110 1122222222111 1111233
Q ss_pred -eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688 133 -IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 133 -~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
+|+|++..++++....+.++..+...|..++.+++...-.
T Consensus 162 ~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 162 PFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred cccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 8999999999988888888999999999999777766554
No 282
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.07 E-value=0.028 Score=45.88 Aligned_cols=102 Identities=23% Similarity=0.272 Sum_probs=69.7
Q ss_pred CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec-ccc-c-CCCC-CCceeE
Q 026688 61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DIS-R-LPFA-SSSIDA 135 (235)
Q Consensus 61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~-~-~~~~-~~~~D~ 135 (235)
++.+|+-+|||+ |.++..+++...-..|+++|.++.-++.|++..... .+..... +.. . .... ...+|+
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~------~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD------VVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe------EeecCccccHHHHHHHHhCCCCCCE
Confidence 345999999998 888788888765679999999999999999854321 1111111 110 0 0111 236999
Q ss_pred EEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCC
Q 026688 136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG 174 (235)
Q Consensus 136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 174 (235)
++-... ....+..+.++++|||.+++.......
T Consensus 242 vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 242 VIEAVG------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred EEECCC------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 994433 234789999999999999998776543
No 283
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.06 E-value=0.0066 Score=53.83 Aligned_cols=129 Identities=16% Similarity=0.085 Sum_probs=76.5
Q ss_pred CCCCeEEEecCCCchHHHHHHHcC-------C-----CceEEEEeCCH---HHHHHHH-----------HHhhhcCCC--
Q 026688 60 VLGGNIIDASCGSGLFSRIFAKSG-------L-----FSLVVALDYSE---NMLKQCY-----------EFVQQESNF-- 111 (235)
Q Consensus 60 ~~~~~vLdiG~G~G~~~~~l~~~~-------~-----~~~v~~~D~s~---~~~~~a~-----------~~~~~~~~~-- 111 (235)
.+.-+|+|+|-|+|.+.....+.. + ..+++.+|..| +.+..+. +....++..
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 345799999999998665444322 2 35789999754 2222222 222111100
Q ss_pred ---------CCCCeeEEecccccC-CCCCCceeEEEecccccccCCh----HHHHHHHHHhccCCcEEEEEEeccCCCcc
Q 026688 112 ---------PKENFLLVRADISRL-PFASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFN 177 (235)
Q Consensus 112 ---------~~~~~~~~~~d~~~~-~~~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~~~~~~~~~ 177 (235)
....+++..+|+.+. +--...+|+++....-- -.+| ..+++.+.++++|||.+.--+
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP-~~np~~W~~~~~~~l~~~~~~~~~~~t~t-------- 206 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAP-AKNPDMWSPNLFNALARLARPGATLATFT-------- 206 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCC-ccChhhccHHHHHHHHHHhCCCCEEEEee--------
Confidence 011344566777542 21124689999754332 1234 488999999999999887322
Q ss_pred cchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688 178 LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 219 (235)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 219 (235)
+...+++-|.++||++-+..
T Consensus 207 ----------------------~a~~vr~~l~~~GF~v~~~~ 226 (662)
T PRK01747 207 ----------------------SAGFVRRGLQEAGFTVRKVK 226 (662)
T ss_pred ----------------------hHHHHHHHHHHcCCeeeecC
Confidence 23457778888888876554
No 284
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.0015 Score=48.68 Aligned_cols=98 Identities=22% Similarity=0.383 Sum_probs=70.6
Q ss_pred CCeEEEecCCCchHHHHHHHcCC---------CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGL---------FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----- 127 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~---------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 127 (235)
-.+++|+.+-.|.+++.+.++.. +..++++|+.+ | + +-+.+...++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M--------a-----PI~GV~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M--------A-----PIEGVIQLQGDITSASTAEAI 107 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C--------C-----ccCceEEeecccCCHhHHHHH
Confidence 57999999999999998887631 12399999855 1 1 1356778889987642
Q ss_pred ---CCCCceeEEEecc-----cccccCCh------HHHHHHHHHhccCCcEEEEEEeccC
Q 026688 128 ---FASSSIDAVHAGA-----AIHCWSSP------STGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 128 ---~~~~~~D~i~~~~-----~l~~~~~~------~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
|...+.|+|+|.. .+|.++.. ...|.-...+|+|||.++.-.+...
T Consensus 108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR 167 (294)
T ss_pred HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence 4556899999964 35655543 2556777889999999997666543
No 285
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.98 E-value=0.0038 Score=47.32 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 026688 42 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 103 (235)
Q Consensus 42 ~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~ 103 (235)
..+-+.++++.++..... ++..|||.-||+|..+.+..+.+. +.+|+|+++...+.|++
T Consensus 173 ~~~kP~~l~~~lI~~~t~-~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 173 PTQKPVELIERLIKASTN-PGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred eecCCHHHHHHHHHhhhc-cceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence 345577888888877653 478999999999999999999877 99999999999998864
No 286
>PRK13699 putative methylase; Provisional
Probab=96.95 E-value=0.0069 Score=46.13 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=52.5
Q ss_pred CCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh
Q 026688 42 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 107 (235)
Q Consensus 42 ~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 107 (235)
..+-+.++.+.++..... ++..|||.-||+|..+....+.+. .++|+|+++...+.+.+++..
T Consensus 145 p~~kP~~l~~~~i~~~s~-~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 145 PTEKPVTSLQPLIESFTH-PNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCcHHHHHHHHHHhCC-CCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHH
Confidence 334567788887765553 478999999999999999988876 999999999999999998865
No 287
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.92 E-value=0.0005 Score=45.19 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=42.0
Q ss_pred ceeEEEeccccccc----CCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHH
Q 026688 132 SIDAVHAGAAIHCW----SSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 205 (235)
Q Consensus 132 ~~D~i~~~~~l~~~----~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (235)
.||+|+|..+.-++ .|. ..+++++.+.|+|||.+++.-...............+...+... -+.++.+.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i-----~lrP~~F~ 75 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSI-----KLRPDQFE 75 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH---------GGGHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhce-----EEChHHHH
Confidence 48999998876432 122 47899999999999999986543221100011111111111111 24567788
Q ss_pred HHHHH--cCCceeEEE
Q 026688 206 DLCRA--CGLVDFKCT 219 (235)
Q Consensus 206 ~~l~~--~Gf~~~~~~ 219 (235)
..|.+ .||..++..
T Consensus 76 ~~L~~~evGF~~~e~~ 91 (110)
T PF06859_consen 76 DYLLEPEVGFSSVEEL 91 (110)
T ss_dssp HHHTSTTT---EEEEE
T ss_pred HHHHhcccceEEEEEc
Confidence 87777 599876644
No 288
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=96.90 E-value=0.025 Score=40.83 Aligned_cols=129 Identities=19% Similarity=0.134 Sum_probs=78.5
Q ss_pred ecCCCchHHHHHHHcCC-CceEEEEeCC--HHHHHHHH---HHhhhcCCCCCCCeeEEecccccCC----CCCCceeEEE
Q 026688 68 ASCGSGLFSRIFAKSGL-FSLVVALDYS--ENMLKQCY---EFVQQESNFPKENFLLVRADISRLP----FASSSIDAVH 137 (235)
Q Consensus 68 iG~G~G~~~~~l~~~~~-~~~v~~~D~s--~~~~~~a~---~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~i~ 137 (235)
||=|.=.++..|++... ...+++.-++ .+..+... .++..... ..-......|+.++. ...+.||.|+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~--~g~~V~~~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE--LGVTVLHGVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh--cCCccccCCCCCcccccccccCCcCCEEE
Confidence 45555566667777754 4456655554 33333322 33322210 112233566766653 2457899999
Q ss_pred ecccccc--cCC----h-------HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHH
Q 026688 138 AGAAIHC--WSS----P-------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI 204 (235)
Q Consensus 138 ~~~~l~~--~~~----~-------~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (235)
.++-.-- ..+ . ..+++.+..+|+++|.+.++-..... ++...+
T Consensus 81 FNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p------------------------y~~W~i 136 (166)
T PF10354_consen 81 FNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP------------------------YDSWNI 136 (166)
T ss_pred EeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC------------------------CccccH
Confidence 8754322 001 0 36788999999999999998766531 355567
Q ss_pred HHHHHHcCCceeEEEeeC
Q 026688 205 EDLCRACGLVDFKCTRNR 222 (235)
Q Consensus 205 ~~~l~~~Gf~~~~~~~~~ 222 (235)
+.+.+++||.......+.
T Consensus 137 ~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 137 EELAAEAGLVLVRKVPFD 154 (166)
T ss_pred HHHHHhcCCEEEEEecCC
Confidence 788899999988877554
No 289
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.90 E-value=0.0021 Score=50.46 Aligned_cols=112 Identities=11% Similarity=0.067 Sum_probs=73.6
Q ss_pred CCeEEEecCCCchHHHHHHHcC--------------------CCceEEEEeCCH--HHHHHHHHHhhhc-----------
Q 026688 62 GGNIIDASCGSGLFSRIFAKSG--------------------LFSLVVALDYSE--NMLKQCYEFVQQE----------- 108 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~--------------------~~~~v~~~D~s~--~~~~~a~~~~~~~----------- 108 (235)
..+||.||.|.|.-...++... +...++.+|+.+ ..+......+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999986666554432 114899999974 5666665554433
Q ss_pred -CC--CCCCCeeEEecccccCCCCC-------CceeEEEecccccc-----cCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688 109 -SN--FPKENFLLVRADISRLPFAS-------SSIDAVHAGAAIHC-----WSSPSTGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 109 -~~--~~~~~~~~~~~d~~~~~~~~-------~~~D~i~~~~~l~~-----~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
.. ...-++.|.+.|+.....++ ...++|.+.+++.- ....-++|..+-..++||..|+|++....
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS 246 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS 246 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence 11 11125788899987754211 24677776655522 23335899999999999999999886553
No 290
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.88 E-value=0.0086 Score=45.16 Aligned_cols=116 Identities=15% Similarity=0.162 Sum_probs=74.3
Q ss_pred HHHHHHHH---hhcCCCCCCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc
Q 026688 47 EKEFELMK---GYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 122 (235)
Q Consensus 47 ~~~~~~i~---~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d 122 (235)
.++...|. +.+..+|+.+||-+|+++|....++.+- +|+..|++++.|+..-......... -.|+.-+.-|
T Consensus 139 SKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-----RtNiiPIiED 213 (317)
T KOG1596|consen 139 SKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-----RTNIIPIIED 213 (317)
T ss_pred HHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-----cCCceeeecc
Confidence 34455553 3445677999999999999998888775 7888999999987433332222211 3456666677
Q ss_pred cccCC---CCCCceeEEEecccccccCChH---HHHHHHHHhccCCcEEEEEEecc
Q 026688 123 ISRLP---FASSSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 123 ~~~~~---~~~~~~D~i~~~~~l~~~~~~~---~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
+.... ....-.|+|+ ..+.+|+ .+.-++.-.||+||.++++....
T Consensus 214 ArhP~KYRmlVgmVDvIF-----aDvaqpdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 214 ARHPAKYRMLVGMVDVIF-----ADVAQPDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred CCCchheeeeeeeEEEEe-----ccCCCchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 75411 1122345554 3444443 34457788999999999977543
No 291
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.82 E-value=0.011 Score=48.38 Aligned_cols=106 Identities=18% Similarity=0.153 Sum_probs=75.8
Q ss_pred CCeEEEecCCCchHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-CCCCCceeEEEec
Q 026688 62 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAG 139 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~~ 139 (235)
+.++||.=+|+|-=++.++.. ....+|+.-|+|+..++..++++..++... .++++.+.|+..+ ......||+|=.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~-~~~~v~~~DAn~ll~~~~~~fD~IDl- 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED-ERIEVSNMDANVLLYSRQERFDVIDL- 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG-CCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC-ceEEEehhhHHHHhhhccccCCEEEe-
Confidence 569999999999888877776 334589999999999999999998877532 2578888888653 224578999873
Q ss_pred ccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688 140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
.-+..|..+++.+.+.++.||.|.++....
T Consensus 128 ---DPfGSp~pfldsA~~~v~~gGll~vTaTD~ 157 (377)
T PF02005_consen 128 ---DPFGSPAPFLDSALQAVKDGGLLCVTATDT 157 (377)
T ss_dssp -----SS--HHHHHHHHHHEEEEEEEEEEE--H
T ss_pred ---CCCCCccHhHHHHHHHhhcCCEEEEecccc
Confidence 444566789999999999999999977654
No 292
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.79 E-value=0.025 Score=48.15 Aligned_cols=101 Identities=23% Similarity=0.255 Sum_probs=67.1
Q ss_pred CCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-----------C
Q 026688 59 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-----------L 126 (235)
Q Consensus 59 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-----------~ 126 (235)
..++.+|+-+|||. |..+...++.. .+.|+++|.+++-++.+++. . .++...|..+ .
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl-G---------A~~v~i~~~e~~~~~~gya~~~ 230 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM-G---------AEFLELDFEEEGGSGDGYAKVM 230 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-C---------CeEEEeccccccccccchhhhc
Confidence 34689999999998 66666666653 35899999999999988863 1 1211111110 0
Q ss_pred C----------CC--CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 127 P----------FA--SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 127 ~----------~~--~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
. +. ...+|+|+.......-+.+.-+.+++.+.++|||.++....
T Consensus 231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 01 14689999766554333454446999999999999887655
No 293
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.75 E-value=0.041 Score=43.57 Aligned_cols=104 Identities=17% Similarity=0.164 Sum_probs=71.4
Q ss_pred CCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec-----ccccC---CC
Q 026688 58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-----DISRL---PF 128 (235)
Q Consensus 58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-----d~~~~---~~ 128 (235)
..+++.+||-+|+|+ |-.+..+++..--.+|..+|+++.-++.|++ +... .+..... ++.+. ..
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~------~~~~~~~~~~~~~~~~~v~~~~ 238 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT------VTDPSSHKSSPQELAELVEKAL 238 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe------EEeeccccccHHHHHHHHHhhc
Confidence 455689999999998 7777777777555699999999999999998 4321 1111111 11110 12
Q ss_pred CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCC
Q 026688 129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG 174 (235)
Q Consensus 129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 174 (235)
....+|+.+-...++ ..++.....+++||.+++..+..+.
T Consensus 239 g~~~~d~~~dCsG~~------~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 239 GKKQPDVTFDCSGAE------VTIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred cccCCCeEEEccCch------HHHHHHHHHhccCCEEEEeccCCCc
Confidence 234588888554444 5677888999999999998877643
No 294
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.73 E-value=0.013 Score=43.99 Aligned_cols=125 Identities=14% Similarity=0.215 Sum_probs=76.4
Q ss_pred hhhcccccccccccc-ee--cccccCCCCCCHHHHHHHHhhcCC------CCCCeEEEecCCCchHHHHHHHcCCCceEE
Q 026688 19 EFFRMPFMSFIYERG-WR--QNFVWGGFPGPEKEFELMKGYLKP------VLGGNIIDASCGSGLFSRIFAKSGLFSLVV 89 (235)
Q Consensus 19 ~~~~~~~~~~~~~~~-w~--~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~ 89 (235)
..+....+..+|.-. |. +.+.--+.|+....+..+.+++.. .+..++||||.|.--.=-.+-.+-....++
T Consensus 27 k~LnKAlL~~fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfv 106 (292)
T COG3129 27 KALNKALLAHFYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFV 106 (292)
T ss_pred HHHHHHHHHHhcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceee
Confidence 334444444444432 43 345556678888888888777632 235689999988743322222222234899
Q ss_pred EEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-C--C-CCCceeEEEecccccc
Q 026688 90 ALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-P--F-ASSSIDAVHAGAAIHC 144 (235)
Q Consensus 90 ~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~--~-~~~~~D~i~~~~~l~~ 144 (235)
|.|+|+..++.|+..+..+... ...+++....-.. + + . ..+.||+++|+--+|.
T Consensus 107 Gseid~~sl~sA~~ii~~N~~l-~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 107 GSEIDSQSLSSAKAIISANPGL-ERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred cCccCHHHHHHHHHHHHcCcch-hhheeEEeccCccccccccccccceeeeEecCCCcch
Confidence 9999999999999998876211 2235554333222 1 1 1 2468999999988774
No 295
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=96.66 E-value=0.091 Score=43.24 Aligned_cols=124 Identities=16% Similarity=0.089 Sum_probs=72.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCCchHHH----HHHHc---CCCceEEEEeC----CHHHHHHHHHHhhhcCCCCCCCe
Q 026688 48 KEFELMKGYLKPVLGGNIIDASCGSGLFSR----IFAKS---GLFSLVVALDY----SENMLKQCYEFVQQESNFPKENF 116 (235)
Q Consensus 48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~----~l~~~---~~~~~v~~~D~----s~~~~~~a~~~~~~~~~~~~~~~ 116 (235)
...+.|++.+.....-.|+|+|.|.|.--. .|+.+ -|..++|+++. +...++.+.+++...-..-....
T Consensus 97 taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~f 176 (374)
T PF03514_consen 97 TANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPF 176 (374)
T ss_pred chhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccE
Confidence 345677777777778899999999995444 44443 25678999999 78888888877754311002234
Q ss_pred eEEec---ccccCC-----CCCCceeEEEecccccccCC-------hH-HHHHHHHHhccCCcEEEEEEeccC
Q 026688 117 LLVRA---DISRLP-----FASSSIDAVHAGAAIHCWSS-------PS-TGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 117 ~~~~~---d~~~~~-----~~~~~~D~i~~~~~l~~~~~-------~~-~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
+|... +.+++. ...+..=+|-|...+||+.+ +. .+| ...+.|+|. .+++++...+
T Consensus 177 ef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L-~~ir~L~P~-vvv~~E~ea~ 247 (374)
T PF03514_consen 177 EFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFL-RVIRSLNPK-VVVLVEQEAD 247 (374)
T ss_pred EEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHH-HHHHhcCCC-EEEEEeecCC
Confidence 44442 222221 22233333445566788752 22 345 445577887 4445555443
No 296
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.60 E-value=0.054 Score=43.01 Aligned_cols=163 Identities=12% Similarity=0.019 Sum_probs=98.1
Q ss_pred HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCC-HHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---
Q 026688 52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS-ENMLKQCYEFVQQESNFPKENFLLVRADISRLP--- 127 (235)
Q Consensus 52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--- 127 (235)
.+.+.+... ...|+-+|||--.-...+ ..+. .+...|++ |+.++.=++.+...+..+..+.+++..|+.+..
T Consensus 84 ~~~~~~~~g-~~qvViLgaGLDTRayRl--~~~~-~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~ 159 (297)
T COG3315 84 FVRAALDAG-IRQVVILGAGLDTRAYRL--DWPK-GTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQ 159 (297)
T ss_pred HHHHHHHhc-ccEEEEeccccccceeec--CCCC-CCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHH
Confidence 334445544 689999999874332222 2221 35555555 677777777777766554557899999998422
Q ss_pred ------CCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCC-Ccccc-hhHHHHHHhH--hhcCCc
Q 026688 128 ------FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDG-PFNLI-PFSRLLRQNM--MQISGS 195 (235)
Q Consensus 128 ------~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~-~~~~~-~~~~~~~~~~--~~~~~~ 195 (235)
+.....-++++=+++.+++.. .+++..+...+.||..++........ ..... .......... ......
T Consensus 160 ~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 239 (297)
T COG3315 160 ALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELV 239 (297)
T ss_pred HHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccce
Confidence 224555677888888888755 48899999999998888877641111 00000 0000000000 001112
Q ss_pred eeecCHHHHHHHHHHcCCceeEE
Q 026688 196 YTFLSEREIEDLCRACGLVDFKC 218 (235)
Q Consensus 196 ~~~~~~~~~~~~l~~~Gf~~~~~ 218 (235)
.......+++.++.+.||.....
T Consensus 240 ~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 240 YFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred eccCCHHHHHHHHHhcCEEEEec
Confidence 33455899999999999987665
No 297
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.59 E-value=0.005 Score=47.86 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=71.8
Q ss_pred CCeEEEecCCCchHHH-HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688 62 GGNIIDASCGSGLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 140 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~-~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~ 140 (235)
+..|+|+=+|-|+++. .+...+. ..|.++|++|..++..++.+..++. ..+.....+|-... -+....|-|.+
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agA-k~V~A~EwNp~svEaLrR~~~~N~V--~~r~~i~~gd~R~~-~~~~~AdrVnL-- 268 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGA-KTVFACEWNPWSVEALRRNAEANNV--MDRCRITEGDNRNP-KPRLRADRVNL-- 268 (351)
T ss_pred cchhhhhhcccceEEeehhhccCc-cEEEEEecCHHHHHHHHHHHHhcch--HHHHHhhhcccccc-Cccccchheee--
Confidence 4789999999999999 5555553 5899999999999999998877643 23444455555443 23566676663
Q ss_pred cccccCChHHHHHHHHHhccCCc--EEEEEEecc
Q 026688 141 AIHCWSSPSTGVAEISRVLRPGG--VFVGTTYIV 172 (235)
Q Consensus 141 ~l~~~~~~~~~l~~~~~~L~pgG--~li~~~~~~ 172 (235)
.-+|..++-+..+.++|+|.| .+-+.+...
T Consensus 269 --GLlPSse~~W~~A~k~Lk~eggsilHIHenV~ 300 (351)
T KOG1227|consen 269 --GLLPSSEQGWPTAIKALKPEGGSILHIHENVK 300 (351)
T ss_pred --ccccccccchHHHHHHhhhcCCcEEEEecccc
Confidence 456666777778888888844 444444433
No 298
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.58 E-value=0.013 Score=45.47 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=36.0
Q ss_pred CCeEEEecCCCchHHHHHHHcCC--------CceEEEEeCCHHHHHHHHHHhhh
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFVQQ 107 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~--------~~~v~~~D~s~~~~~~a~~~~~~ 107 (235)
+-+|+|+|+|+|.++..+++... ..+++.+|+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 57999999999999998877521 35899999999998888887765
No 299
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.58 E-value=0.056 Score=43.84 Aligned_cols=100 Identities=16% Similarity=0.136 Sum_probs=60.7
Q ss_pred CCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688 59 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 137 (235)
Q Consensus 59 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 137 (235)
..++.+||-.|+|. |..+..+++..-...|+++|.++.-++.+++. ... .-+.....++.+.....+.+|+|+
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~-----~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GAD-----KLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCc-----EEecCCcccHHHHhccCCCCCEEE
Confidence 34578999999875 66777777664223689999999888887752 110 001111111211111123588887
Q ss_pred ecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
-. ... ...+..+.+++++||.++....
T Consensus 241 d~-----~G~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 241 EV-----SGH-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred EC-----CCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 43 222 2457788899999999998764
No 300
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.48 E-value=0.078 Score=43.82 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=68.5
Q ss_pred cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc-ccc-C-CC-CCC
Q 026688 57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-ISR-L-PF-ASS 131 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-~~~-~-~~-~~~ 131 (235)
....++.+||..|||. |..+..+++.....+++++|.+++.++.+++... ...+.....+ ..+ + .. ...
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~------~~vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG------AETINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC------cEEEcCCcchHHHHHHHHHcCCC
Confidence 3445678999999988 8888888887543369999999998888877421 1111111111 111 1 11 223
Q ss_pred ceeEEEecccc-----------cc----cCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 132 SIDAVHAGAAI-----------HC----WSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 132 ~~D~i~~~~~l-----------~~----~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
.+|+|+-...- .| ..++...+.++.+.++|+|.++....
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 68988864321 11 13345678999999999999988753
No 301
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.41 E-value=0.017 Score=48.49 Aligned_cols=101 Identities=11% Similarity=0.160 Sum_probs=72.8
Q ss_pred CCeEEEecCCCchHHHHHHHc----CCCceEEEEeCCHHHHHHHHHH-hhhcCCCCCCCeeEEecccccCCCCCCceeEE
Q 026688 62 GGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEF-VQQESNFPKENFLLVRADISRLPFASSSIDAV 136 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~----~~~~~v~~~D~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 136 (235)
...|+-+|+|-|-+.....+. ....++++++-+|.++...+.+ ...+ ..+++++..|+...+.+..+.|++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W----~~~Vtii~~DMR~w~ap~eq~DI~ 443 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW----DNRVTIISSDMRKWNAPREQADII 443 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh----cCeeEEEeccccccCCchhhccch
Confidence 456888899999876655443 3457899999999887766542 2222 568999999999987555789998
Q ss_pred EecccccccCCh---HHHHHHHHHhccCCcEEEE
Q 026688 137 HAGAAIHCWSSP---STGVAEISRVLRPGGVFVG 167 (235)
Q Consensus 137 ~~~~~l~~~~~~---~~~l~~~~~~L~pgG~li~ 167 (235)
++ ..|..+.|- ...|.-+.+.|||+|..|=
T Consensus 444 VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 444 VS-ELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred HH-HhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 85 222333332 3778999999999987663
No 302
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.0099 Score=49.09 Aligned_cols=113 Identities=18% Similarity=0.063 Sum_probs=71.3
Q ss_pred CCCCCCeEEEecCCCchHHHHHHHc--CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc--cCCCC-CCc
Q 026688 58 KPVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS--RLPFA-SSS 132 (235)
Q Consensus 58 ~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~--~~~~~-~~~ 132 (235)
....+..++|+|.|.|.-...+... .-.-.++.||.+..|.......+....- ...+.+...-+. .+|.. ...
T Consensus 197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~--~g~~~v~~~~~~r~~~pi~~~~~ 274 (491)
T KOG2539|consen 197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH--IGEPIVRKLVFHRQRLPIDIKNG 274 (491)
T ss_pred cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh--cCchhccccchhcccCCCCcccc
Confidence 3445688999999876554444332 2234799999999999998887754100 001111110111 12332 356
Q ss_pred eeEEEecccccccCChH----HHHHHHHHhccCCcEEEEEEecc
Q 026688 133 IDAVHAGAAIHCWSSPS----TGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 133 ~D~i~~~~~l~~~~~~~----~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
||+|++.+.++++.+.. ..-..+.+..++|+.+++.+...
T Consensus 275 yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 275 YDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 99999999999987763 33445666788899998887654
No 303
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.11 Score=39.53 Aligned_cols=107 Identities=15% Similarity=0.183 Sum_probs=71.8
Q ss_pred CCCeEEEecCCCchHHHHHHHcC----CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-CCCCCcee
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-PFASSSID 134 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~----~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D 134 (235)
.+.+.+|+|+|+..-+..+.+.. .-..++.+|+|...++..-+.+..... ...+.-.++|++. + .++...--
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~--~l~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP--GLEVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC--CCeEeehhhhHHHHHhcccCCCeE
Confidence 36799999999987777666653 336899999999888875555443311 3346667788754 1 12333323
Q ss_pred EEE-ecccccccCCh--HHHHHHHHHhccCCcEEEEEE
Q 026688 135 AVH-AGAAIHCWSSP--STGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 135 ~i~-~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~ 169 (235)
+++ ...++..+... ..++..+...++||-++++..
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 333 34566666533 488999999999999888754
No 304
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=96.22 E-value=0.019 Score=39.18 Aligned_cols=87 Identities=21% Similarity=0.229 Sum_probs=56.2
Q ss_pred CeeEEeccccc-CCCCCCceeEEEecccccccCCh----HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhH
Q 026688 115 NFLLVRADISR-LPFASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM 189 (235)
Q Consensus 115 ~~~~~~~d~~~-~~~~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~ 189 (235)
.+++..+|+.+ ++--...+|+|+....-- -.+| ..+++++.++++|||.+.--.
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP-~~nPelWs~e~~~~l~~~~~~~~~l~Tys-------------------- 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSP-AKNPELWSEELFKKLARLSKPGGTLATYS-------------------- 90 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-T-TTSGGGSSHHHHHHHHHHEEEEEEEEES---------------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCC-cCCcccCCHHHHHHHHHHhCCCcEEEEee--------------------
Confidence 46677788754 222237899999765322 2344 489999999999998776321
Q ss_pred hhcCCceeecCHHHHHHHHHHcCCceeEEEeeC-cEEEEEEecC
Q 026688 190 MQISGSYTFLSEREIEDLCRACGLVDFKCTRNR-GFVMFTATKP 232 (235)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~-~~~~~~~~k~ 232 (235)
....+++.|.++||.+.+....+ ..-+.+|.||
T Consensus 91 ----------~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 91 ----------SAGAVRRALQQAGFEVEKVPGFGRKREMLRAVKP 124 (124)
T ss_dssp -----------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC-
T ss_pred ----------chHHHHHHHHHcCCEEEEcCCCCCcchheEEEcC
Confidence 23458899999999988777654 5677777764
No 305
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.22 E-value=0.15 Score=41.12 Aligned_cols=106 Identities=21% Similarity=0.197 Sum_probs=79.8
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-CCCCceeEEEecc
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVHAGA 140 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~i~~~~ 140 (235)
+.+|+|.=+|+|.=++.++...+..+++.-|+||..++.+++++..+. ......+..|+..+= -....||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~---~~~~~v~n~DAN~lm~~~~~~fd~IDi-- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS---GEDAEVINKDANALLHELHRAFDVIDI-- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC---cccceeecchHHHHHHhcCCCccEEec--
Confidence 689999999999888888777665689999999999999999998763 234555556665431 11256777652
Q ss_pred cccccCChHHHHHHHHHhccCCcEEEEEEeccCC
Q 026688 141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG 174 (235)
Q Consensus 141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~ 174 (235)
.=+..|..+++.+.+.++.||.|-++-.....
T Consensus 128 --DPFGSPaPFlDaA~~s~~~~G~l~vTATD~a~ 159 (380)
T COG1867 128 --DPFGSPAPFLDAALRSVRRGGLLCVTATDTAP 159 (380)
T ss_pred --CCCCCCchHHHHHHHHhhcCCEEEEEeccccc
Confidence 33445678899999999999999987665543
No 306
>PRK10458 DNA cytosine methylase; Provisional
Probab=96.16 E-value=0.5 Score=40.09 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=35.9
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHh
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV 105 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~ 105 (235)
..+++|+-||.|.+..-+...+. -.|.++|+++.+.+.-+.+.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHc
Confidence 46999999999999999988764 36789999998888777664
No 307
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.07 E-value=0.017 Score=47.42 Aligned_cols=61 Identities=15% Similarity=0.264 Sum_probs=50.4
Q ss_pred CeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC
Q 026688 63 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 126 (235)
Q Consensus 63 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 126 (235)
..|||||.|||-++....+.+.+ .|++++.-..|...|++....++. ..+|+++..-..+.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~--SdkI~vInkrStev 128 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGM--SDKINVINKRSTEV 128 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCC--ccceeeecccccee
Confidence 56999999999999999888854 699999999999999999888876 55777766555443
No 308
>PHA01634 hypothetical protein
Probab=95.98 E-value=0.028 Score=38.07 Aligned_cols=45 Identities=22% Similarity=0.196 Sum_probs=40.0
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 107 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 107 (235)
+++|+|||++-|..++.++-++. ..|+++++++...+..++....
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhh
Confidence 78999999999999999998875 5899999999999999886654
No 309
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.85 E-value=0.043 Score=42.23 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=61.0
Q ss_pred CCCCCeEEEecCCCchHHHHHHH---c--CCCceEEEEeCC--------------------------HHHHHHHHHHhhh
Q 026688 59 PVLGGNIIDASCGSGLFSRIFAK---S--GLFSLVVALDYS--------------------------ENMLKQCYEFVQQ 107 (235)
Q Consensus 59 ~~~~~~vLdiG~G~G~~~~~l~~---~--~~~~~v~~~D~s--------------------------~~~~~~a~~~~~~ 107 (235)
..-++.|+|.||-.|..+..++. . .++.++++.|-= ...++..++++..
T Consensus 72 ~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~ 151 (248)
T PF05711_consen 72 EDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR 151 (248)
T ss_dssp TTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred cCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence 34478999999998877765433 2 134578888830 1134555555554
Q ss_pred cCCCCCCCeeEEeccccc-CC-CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688 108 ESNFPKENFLLVRADISR-LP-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 108 ~~~~~~~~~~~~~~d~~~-~~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
.++. ..++.++.+.+.+ +| .+...+-++.+.. .........|..++..|.|||.|++-+..
T Consensus 152 ~gl~-~~~v~~vkG~F~dTLp~~p~~~IAll~lD~--DlYesT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 152 YGLL-DDNVRFVKGWFPDTLPDAPIERIALLHLDC--DLYESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp TTTS-STTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred cCCC-cccEEEECCcchhhhccCCCccEEEEEEec--cchHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 4432 3579999999965 33 1223332222111 11122357899999999999999997654
No 310
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.81 E-value=0.39 Score=38.57 Aligned_cols=137 Identities=20% Similarity=0.259 Sum_probs=81.3
Q ss_pred eEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---CCCCceeEEEecc
Q 026688 64 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVHAGA 140 (235)
Q Consensus 64 ~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~i~~~~ 140 (235)
+++|+-||.|.++.-+.+.+ ...+.++|+++...+..+.+.. .....|+.+.. ++. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~----------~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP----------EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT----------EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc----------ccccccccccccccccc-cceEEEecc
Confidence 68999999999999999987 3468899999998888887652 57888888764 333 599999765
Q ss_pred cccccC---------ChH----HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHH
Q 026688 141 AIHCWS---------SPS----TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 207 (235)
Q Consensus 141 ~l~~~~---------~~~----~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (235)
-+..++ ++. ..+-++.+.++|. ++++ +.... ... .........+...
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk-~~~~-ENV~~----l~~--------------~~~~~~~~~i~~~ 129 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPK-YFLL-ENVPG----LLS--------------SKNGEVFKEILEE 129 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-S-EEEE-EEEGG----GGT--------------GGGHHHHHHHHHH
T ss_pred CCceEeccccccccccccchhhHHHHHHHhhccce-EEEe-cccce----eec--------------ccccccccccccc
Confidence 443332 221 1233444556774 3333 33221 000 0000234677888
Q ss_pred HHHcCCceeEEE---------eeCcEEEEEEecC
Q 026688 208 CRACGLVDFKCT---------RNRGFVMFTATKP 232 (235)
Q Consensus 208 l~~~Gf~~~~~~---------~~~~~~~~~~~k~ 232 (235)
|++.|+.+.... .....+++++.|.
T Consensus 130 l~~lGY~v~~~vlna~~yGvPQ~R~R~fivg~r~ 163 (335)
T PF00145_consen 130 LEELGYNVQWRVLNAADYGVPQNRERVFIVGIRK 163 (335)
T ss_dssp HHHTTEEEEEEEEEGGGGTSSBE-EEEEEEEEEG
T ss_pred ccccceeehhccccHhhCCCCCceeeEEEEEECC
Confidence 899998764443 2233466666654
No 311
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=95.80 E-value=0.015 Score=46.30 Aligned_cols=116 Identities=19% Similarity=0.146 Sum_probs=82.4
Q ss_pred HhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHH-------HHHHhhhcCCCCCCCeeEEecccccC
Q 026688 54 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ-------CYEFVQQESNFPKENFLLVRADISRL 126 (235)
Q Consensus 54 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~-------a~~~~~~~~~~~~~~~~~~~~d~~~~ 126 (235)
++.....+++-|.|.-.|||.++...+.-|. -|.|.||+-.++.. .+.++++++.. ..-+.+..+|+..-
T Consensus 201 AN~Amv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQYg~~-~~fldvl~~D~sn~ 277 (421)
T KOG2671|consen 201 ANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQYGSS-SQFLDVLTADFSNP 277 (421)
T ss_pred hhhhccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHhCCc-chhhheeeecccCc
Confidence 3444556789999999999999998888765 99999999888873 34556665531 22367788898876
Q ss_pred CCC-CCceeEEEecccc------------------------cccCCh---------HHHHHHHHHhccCCcEEEEEEecc
Q 026688 127 PFA-SSSIDAVHAGAAI------------------------HCWSSP---------STGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 127 ~~~-~~~~D~i~~~~~l------------------------~~~~~~---------~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
++. ...||.|+|.--. .|.+.. ...|.-..+.|..||.+++-.+..
T Consensus 278 ~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 278 PLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred chhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 643 4579999995211 222221 245667788999999999876644
No 312
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.79 E-value=0.02 Score=47.64 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=77.3
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-------CCCCCcee
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-------PFASSSID 134 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~~D 134 (235)
...+|-+|-|.|.+...+....|..++++++++|.+++.|+.++.-.. ..+.++...|-.+. ...+..||
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---~~r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---SDRNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---hhhhhhhHhhchHHHHHHhhccccccCCc
Confidence 578999999999999999888888999999999999999998775321 11233333333221 11345799
Q ss_pred EEEeccc---ccccCCh------HHHHHHHHHhccCCcEEEEEEeccC
Q 026688 135 AVHAGAA---IHCWSSP------STGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 135 ~i~~~~~---l~~~~~~------~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
+++..-- .+-+..| ..++..++..|.|.|.+++....++
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 9985311 2223222 3788999999999999998777654
No 313
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.78 E-value=0.066 Score=42.20 Aligned_cols=101 Identities=21% Similarity=0.213 Sum_probs=73.5
Q ss_pred CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688 61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 139 (235)
Q Consensus 61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~ 139 (235)
++.+|.-+|.|. |..+..++-- -.+.|+.+|.|.+-+++....+ ..++.+...+...+...-.+.|++|..
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f-------~~rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLF-------GGRVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CCccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhh-------CceeEEEEcCHHHHHHHhhhccEEEEE
Confidence 356788888886 6666666543 3569999999988877776654 335666666665544334678999977
Q ss_pred ccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
-.+---..|.-+.+++.+.+|||+.|+=+-
T Consensus 239 VLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 239 VLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 666666677778899999999999887543
No 314
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.53 E-value=0.16 Score=41.22 Aligned_cols=95 Identities=16% Similarity=0.111 Sum_probs=58.7
Q ss_pred CCCCCeEEEecCCC-chHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEE
Q 026688 59 PVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 136 (235)
Q Consensus 59 ~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 136 (235)
..++.+||-+|||. |.++..++++ ....+|+++|.++.-++.++. +. .. ....+. . ....+|+|
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~--------~~-~~~~~~---~-~~~g~d~v 226 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD--------ET-YLIDDI---P-EDLAVDHA 226 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC--------ce-eehhhh---h-hccCCcEE
Confidence 34578999999876 6566666654 323579999999887777754 11 11 111111 1 11247888
Q ss_pred EecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 137 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
+-...- ......+....+++++||.+++...
T Consensus 227 iD~~G~---~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 227 FECVGG---RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred EECCCC---CccHHHHHHHHHhCcCCcEEEEEee
Confidence 843221 0123568889999999999987654
No 315
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.092 Score=42.31 Aligned_cols=51 Identities=8% Similarity=0.027 Sum_probs=39.9
Q ss_pred CCCCCCeEEEecCCCchHHHHHHHcC----C----CceEEEEeCCHHHHHHHHHHhhhc
Q 026688 58 KPVLGGNIIDASCGSGLFSRIFAKSG----L----FSLVVALDYSENMLKQCYEFVQQE 108 (235)
Q Consensus 58 ~~~~~~~vLdiG~G~G~~~~~l~~~~----~----~~~v~~~D~s~~~~~~a~~~~~~~ 108 (235)
..+.+..++|+|.|.|.++..+++.. | ..++..+++|+...+.=++.+...
T Consensus 74 g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 74 GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 34446789999999999998887752 2 568999999999888777766543
No 316
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.32 E-value=0.11 Score=44.24 Aligned_cols=98 Identities=19% Similarity=0.201 Sum_probs=63.1
Q ss_pred CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-------------
Q 026688 60 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR------------- 125 (235)
Q Consensus 60 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~------------- 125 (235)
.++.+++-+|+|. |..+..+++.. .+.|+++|.++..++.++.. . .+++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l-G---------a~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM-G---------AEFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-C---------CeEEeccccccccccccceeecC
Confidence 3568999999997 55555555542 34899999999988777752 1 1122222110
Q ss_pred ----------CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688 126 ----------LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 168 (235)
Q Consensus 126 ----------~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~ 168 (235)
++-....+|+|+..-.+.--+.|.-+.+++.+.+|||+.++-.
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 1101246999987665554445555678889999999987743
No 317
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.31 E-value=0.014 Score=45.20 Aligned_cols=120 Identities=16% Similarity=0.180 Sum_probs=66.7
Q ss_pred HHHHHHHhhc---CCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHH-------HHhhhcCCCCCCCee
Q 026688 48 KEFELMKGYL---KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY-------EFVQQESNFPKENFL 117 (235)
Q Consensus 48 ~~~~~i~~~~---~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~-------~~~~~~~~~~~~~~~ 117 (235)
.++..+.+.+ -...+++|||+|||+|-..+.....+. ..+...|.+...++... -.+......-..-..
T Consensus 100 dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~ 178 (282)
T KOG2920|consen 100 DLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDE 178 (282)
T ss_pred HHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhcc-ceeeeEecchhheeeecccceecchhhhhhhhhccccee
Confidence 4445555443 123479999999999988888877763 57888888877663211 000000000000111
Q ss_pred EEecccccCCC-CCC--ceeEEEecccccccCChHHH-HHHHHHhccCCcEEEEE
Q 026688 118 LVRADISRLPF-ASS--SIDAVHAGAAIHCWSSPSTG-VAEISRVLRPGGVFVGT 168 (235)
Q Consensus 118 ~~~~d~~~~~~-~~~--~~D~i~~~~~l~~~~~~~~~-l~~~~~~L~pgG~li~~ 168 (235)
+.+.++.+..+ ..+ +||+|.+..+++..+..... ...-..+++++|.++..
T Consensus 179 i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 179 ILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccccccccchhhhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 11121111110 112 78999988888876665544 55666777788877653
No 318
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.14 E-value=0.63 Score=37.43 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=47.7
Q ss_pred EEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC-CCCceeEEEecccc
Q 026688 65 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAGAAI 142 (235)
Q Consensus 65 vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i~~~~~l 142 (235)
|+|+-||.|.++.-+.+.+. -.+.++|+++..++..+.+... .+...|+.++.. .-..+|+++...-+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~-~~~~a~e~~~~a~~ty~~N~~~---------~~~~~Di~~~~~~~~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF-KCVFASEIDKYAQKTYEANFGN---------KVPFGDITKISPSDIPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHHcCC-eEEEEEeCCHHHHHHHHHhCCC---------CCCccChhhhhhhhCCCcCEEEecCCC
Confidence 58999999999999988874 3467899999988888776431 234566665431 12357888865443
No 319
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=95.12 E-value=0.088 Score=42.60 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=35.2
Q ss_pred CCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 026688 60 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 103 (235)
Q Consensus 60 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~ 103 (235)
.+-..|+|+|+|.|+++..+.-.. +..|.++|-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 345789999999999999886553 4699999999887777764
No 320
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=95.05 E-value=0.019 Score=42.71 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=72.3
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 46 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
-....+.+++.+.+-++...+|.-.|.|..+..+.+++++.+++++|.+|-.-+.|+-...+.- .+++....+.+..
T Consensus 28 VPVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~---~~~l~a~Lg~Fs~ 104 (303)
T KOG2782|consen 28 VPVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELM---HPTLKAVLGNFSY 104 (303)
T ss_pred CceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhc---chhHHHHHhhhHH
Confidence 3456788889999888999999999999999999999999999999999988777776553211 1233333333332
Q ss_pred C-------CCCCCceeEEEecccccc--cCChH
Q 026688 126 L-------PFASSSIDAVHAGAAIHC--WSSPS 149 (235)
Q Consensus 126 ~-------~~~~~~~D~i~~~~~l~~--~~~~~ 149 (235)
+ .+....+|-|++...+.. +++|+
T Consensus 105 ~~~l~~~~gl~~~~vDGiLmDlGcSSMQ~d~pe 137 (303)
T KOG2782|consen 105 IKSLIADTGLLDVGVDGILMDLGCSSMQVDNPE 137 (303)
T ss_pred HHHHHHHhCCCcCCcceEEeecCccccccCCcc
Confidence 2 245678999997655433 45554
No 321
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.94 E-value=0.81 Score=36.73 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=60.6
Q ss_pred CCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-----CCCC
Q 026688 58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-----PFAS 130 (235)
Q Consensus 58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-----~~~~ 130 (235)
...++.+||..|+|. |..+..+++.. ...+++++.++...+.+++. . +.....+-.. . ....
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~-g---------~~~~~~~~~~~~~~~~~~~~~ 230 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL-G---------ADEVLNSLDDSPKDKKAAGLG 230 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh-C---------CCEEEcCCCcCHHHHHHHhcC
Confidence 345577898888764 77777777764 35799999999888777542 1 1111111110 0 1234
Q ss_pred CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
+.+|+++.... ....++++.+.|+++|.++....
T Consensus 231 ~~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 231 GGFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCceEEEECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 56898884322 13467889999999999987643
No 322
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.80 E-value=0.055 Score=35.55 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=27.5
Q ss_pred CCCeEEEecCCCchHHHHHHHcCCCceEEEEeCC
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 94 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s 94 (235)
+...-+|+|||.|-+...|...+. .-.|+|..
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY--PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC--Cccccccc
Confidence 467899999999999999988877 78888873
No 323
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.79 E-value=1.1 Score=36.29 Aligned_cols=123 Identities=21% Similarity=0.220 Sum_probs=80.0
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC---CCCceeEEEe
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---ASSSIDAVHA 138 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~i~~ 138 (235)
..+++|+-||.|.+..-+...+ .--+.++|+++..++.-+.+.. ...+...|..+... ....+|+++.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~--------~~~~~~~di~~~~~~~~~~~~~Dvlig 73 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFP--------HGDIILGDIKELDGEALRKSDVDVLIG 73 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCC--------CCceeechHhhcChhhccccCCCEEEe
Confidence 4689999999999999998887 3478899999999888877643 13455566655421 1117899997
Q ss_pred cccccccC---------ChH----HHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHH
Q 026688 139 GAAIHCWS---------SPS----TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 205 (235)
Q Consensus 139 ~~~l~~~~---------~~~----~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (235)
..-+..++ |+. ..+.++...++| .+++.+.... +... ..-..+.+.
T Consensus 74 GpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~g-----------l~~~--------~~~~~~~i~ 132 (328)
T COG0270 74 GPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKG-----------LLSS--------KGQTFDEIK 132 (328)
T ss_pred CCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCch-----------HHhc--------CchHHHHHH
Confidence 76655543 221 234566667777 3443333221 1000 123567888
Q ss_pred HHHHHcCCc
Q 026688 206 DLCRACGLV 214 (235)
Q Consensus 206 ~~l~~~Gf~ 214 (235)
+.|++.|+.
T Consensus 133 ~~L~~~GY~ 141 (328)
T COG0270 133 KELEELGYG 141 (328)
T ss_pred HHHHHcCCc
Confidence 999999996
No 324
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.75 E-value=0.87 Score=36.76 Aligned_cols=94 Identities=14% Similarity=0.035 Sum_probs=59.1
Q ss_pred cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeE
Q 026688 57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA 135 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 135 (235)
....++.+||-.|+|. |..+..+++.. .+.+++++.+++-++.+++.=. . .+ .+..+. ..+.+|+
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga--------~-~v--i~~~~~--~~~~~d~ 226 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGA--------A-SA--GGAYDT--PPEPLDA 226 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCC--------c-ee--cccccc--CcccceE
Confidence 3455688999999864 55556666653 3579999999888777765311 1 11 111111 1235787
Q ss_pred EEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
++..... ...+....++|++||.+++...
T Consensus 227 ~i~~~~~------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 227 AILFAPA------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEECCCc------HHHHHHHHHhhCCCcEEEEEec
Confidence 6643222 2468889999999999987654
No 325
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.73 E-value=0.3 Score=39.00 Aligned_cols=88 Identities=13% Similarity=0.073 Sum_probs=55.4
Q ss_pred CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688 61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 139 (235)
Q Consensus 61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~ 139 (235)
++.++|-+|||. |.++..+++......+.++|.++.-++.+... . + .|..+. ....+|+|+-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~--------~--i~~~~~--~~~g~Dvvid~ 207 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E--------V--LDPEKD--PRRDYRAIYDA 207 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c--------c--cChhhc--cCCCCCEEEEC
Confidence 467899999875 77777777764323477788887766655431 0 0 111110 12458888843
Q ss_pred ccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
.. . ...+..+.++++++|.+++...
T Consensus 208 ~G-----~-~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 208 SG-----D-PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred CC-----C-HHHHHHHHHhhhcCcEEEEEee
Confidence 22 2 2457888999999999997654
No 326
>PRK13699 putative methylase; Provisional
Probab=94.70 E-value=0.15 Score=38.92 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=32.7
Q ss_pred eEEecccccC--CCCCCceeEEEeccccc----c-----c--CC----hHHHHHHHHHhccCCcEEEE
Q 026688 117 LLVRADISRL--PFASSSIDAVHAGAAIH----C-----W--SS----PSTGVAEISRVLRPGGVFVG 167 (235)
Q Consensus 117 ~~~~~d~~~~--~~~~~~~D~i~~~~~l~----~-----~--~~----~~~~l~~~~~~L~pgG~li~ 167 (235)
+++++|..+. .++++++|+|+..--.. . + .+ ....+.++.|+|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4566676553 45677888888752111 0 0 00 13678999999999998875
No 327
>PTZ00357 methyltransferase; Provisional
Probab=94.69 E-value=0.37 Score=42.39 Aligned_cols=102 Identities=11% Similarity=0.053 Sum_probs=62.8
Q ss_pred CeEEEecCCCchHHHHHHHc----CCCceEEEEeCCHHHHHHHHHHh---hhcCC---CCCCCeeEEecccccCCCCC--
Q 026688 63 GNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFV---QQESN---FPKENFLLVRADISRLPFAS-- 130 (235)
Q Consensus 63 ~~vLdiG~G~G~~~~~l~~~----~~~~~v~~~D~s~~~~~~a~~~~---~~~~~---~~~~~~~~~~~d~~~~~~~~-- 130 (235)
..|+-+|+|-|-+.....+. +...+++++|-++..+.....+. ..+.. .-..+++++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 35899999999887655543 44578999999966443433332 12210 00235899999998864221
Q ss_pred ---------CceeEEEe--cccccccCChHHHHHHHHHhccC----CcE
Q 026688 131 ---------SSIDAVHA--GAAIHCWSSPSTGVAEISRVLRP----GGV 164 (235)
Q Consensus 131 ---------~~~D~i~~--~~~l~~~~~~~~~l~~~~~~L~p----gG~ 164 (235)
+++|+||+ .++|..=.-....|.-+.+.||+ +|.
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 37999985 33333211112567777777776 665
No 328
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.59 E-value=0.45 Score=38.78 Aligned_cols=97 Identities=12% Similarity=0.083 Sum_probs=57.6
Q ss_pred CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeC---CHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeE
Q 026688 60 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDY---SENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA 135 (235)
Q Consensus 60 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~---s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 135 (235)
.++.+||-+|+|. |.++..+++.. .+++++++. ++.-++.+++. + ...+.....+..+.. ....+|+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~----G---a~~v~~~~~~~~~~~-~~~~~d~ 241 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEEL----G---ATYVNSSKTPVAEVK-LVGEFDL 241 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHc----C---CEEecCCccchhhhh-hcCCCCE
Confidence 4578999999875 67777777664 348999986 56666666542 1 111111011111100 1246888
Q ss_pred EEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688 136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
|+-... . ...+....+++++||.+++....
T Consensus 242 vid~~g-----~-~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 242 IIEATG-----V-PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred EEECcC-----C-HHHHHHHHHHccCCcEEEEEecC
Confidence 884322 1 23578889999999998876543
No 329
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.53 E-value=0.31 Score=33.21 Aligned_cols=85 Identities=24% Similarity=0.227 Sum_probs=56.8
Q ss_pred CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-----C-CCCCceeEEEeccccccc
Q 026688 72 SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P-FASSSIDAVHAGAAIHCW 145 (235)
Q Consensus 72 ~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~~D~i~~~~~l~~~ 145 (235)
.|..+..+++... ++|+++|.++.-++.+++.- -..+...+-.+. . .+...+|+|+-.-
T Consensus 2 vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~G---------a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~----- 66 (130)
T PF00107_consen 2 VGLMAIQLAKAMG-AKVIATDRSEEKLELAKELG---------ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCV----- 66 (130)
T ss_dssp HHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTT---------ESEEEETTTSSHHHHHHHHTTTSSEEEEEESS-----
T ss_pred hHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhc---------ccccccccccccccccccccccccceEEEEec-----
Confidence 4677777777754 79999999999888887631 111222221111 1 2235799999432
Q ss_pred CChHHHHHHHHHhccCCcEEEEEEecc
Q 026688 146 SSPSTGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 146 ~~~~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
. ....++....+++|+|.+++.....
T Consensus 67 g-~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 67 G-SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp S-SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred C-cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2 2467899999999999999987665
No 330
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.51 E-value=1 Score=36.79 Aligned_cols=100 Identities=16% Similarity=0.108 Sum_probs=59.4
Q ss_pred CCCCCCeEEEecCCC-chHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-C-CCCCc
Q 026688 58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-P-FASSS 132 (235)
Q Consensus 58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~ 132 (235)
...++.+||-.|+|. |..+..+++.. .+ .|+++|.++.-.+.+++. .. ..-+.....+..+ . . .....
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~~-Ga-----~~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAREF-GA-----THTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHc-CC-----ceEEcCCCcCHHHHHHHHhCCCC
Confidence 445688999999865 66666677664 34 599999999888777542 11 0001111111110 0 0 12235
Q ss_pred eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 133 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 133 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
+|+|+-. ...+ ..++...+.+++||.+++...
T Consensus 246 ~d~vid~-----~g~~-~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 246 ADVVIDA-----VGRP-ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCEEEEC-----CCCH-HHHHHHHHHhccCCEEEEECC
Confidence 8888832 2222 357778899999999987654
No 331
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.49 E-value=0.055 Score=44.35 Aligned_cols=104 Identities=21% Similarity=0.276 Sum_probs=70.0
Q ss_pred CCCcccccccChhhhhhcccccccccccceecccccCCCCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCC
Q 026688 5 SGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL 84 (235)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~ 84 (235)
|+++++.+....+...|.-.+- +-.|..+.. ..-+.+....+ ++..|.|+-||.|-++..+++.+
T Consensus 207 AGe~n~vtevre~~~~Fk~Dfs----kVYWnsRL~--------~Eherlsg~fk--~gevv~D~FaGvGPfa~Pa~kK~- 271 (495)
T KOG2078|consen 207 AGERNLVTEVREGGERFKFDFS----KVYWNSRLS--------HEHERLSGLFK--PGEVVCDVFAGVGPFALPAAKKG- 271 (495)
T ss_pred cCCCceEEEEecCCeeEEEecc----eEEeeccch--------hHHHHHhhccC--CcchhhhhhcCcCccccchhhcC-
Confidence 4555666666555555555432 222665542 12234444444 48899999999999999999887
Q ss_pred CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 85 FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 85 ~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
+.|++-|.++++++..+.++..+... ..++..+..|+..
T Consensus 272 -crV~aNDLNpesik~Lk~ni~lNkv~-~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 272 -CRVYANDLNPESIKWLKANIKLNKVD-PSAIEIFNMDAKD 310 (495)
T ss_pred -cEEEecCCCHHHHHHHHHhccccccc-hhheeeecccHHH
Confidence 59999999999999999988765431 2247777766643
No 332
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.20 E-value=1 Score=36.97 Aligned_cols=101 Identities=19% Similarity=0.180 Sum_probs=59.3
Q ss_pred cCCCCCCeEEEecCCC-chHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-CCCCCc
Q 026688 57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-PFASSS 132 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~ 132 (235)
....++.+||-.|+|. |..+..+++.. .+ .|+++|.++.-++.+++. .. ..-+.....+..+ . ....+.
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~~-Ga-----~~~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALAREL-GA-----TATVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHc-CC-----ceEeCCCchhHHHHHHHHhCCC
Confidence 3445678899999875 66666666654 34 699999999888877642 11 0001111111110 0 011235
Q ss_pred eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 133 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 133 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
+|+|+-.. .. ...+....+.++++|.++....
T Consensus 260 ~d~vid~~-----G~-~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 260 VDYAFEMA-----GS-VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCEEEECC-----CC-hHHHHHHHHHHhcCCEEEEEcc
Confidence 88888422 11 2457788899999999887553
No 333
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.13 E-value=0.37 Score=37.46 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=65.7
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC---CceeEEEe
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS---SSIDAVHA 138 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~D~i~~ 138 (235)
++.|+-+| -.--.+++++-.+-..++..+|+++..+...++.+.+.+ ..++..+..|+.+ |+|+ .+||+++.
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g---~~~ie~~~~Dlr~-plpe~~~~kFDvfiT 227 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG---YNNIEAFVFDLRN-PLPEDLKRKFDVFIT 227 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC---ccchhheeehhcc-cChHHHHhhCCeeec
Confidence 57799999 444444544444433589999999999999988887776 4568889999976 4333 68999883
Q ss_pred cccccccCChHHHHHHHHHhccCC---cEEEEEEe
Q 026688 139 GAAIHCWSSPSTGVAEISRVLRPG---GVFVGTTY 170 (235)
Q Consensus 139 ~~~l~~~~~~~~~l~~~~~~L~pg---G~li~~~~ 170 (235)
.-. +.++....++..=...|+.- |++.++..
T Consensus 228 DPp-eTi~alk~FlgRGI~tLkg~~~aGyfgiT~r 261 (354)
T COG1568 228 DPP-ETIKALKLFLGRGIATLKGEGCAGYFGITRR 261 (354)
T ss_pred Cch-hhHHHHHHHHhccHHHhcCCCccceEeeeec
Confidence 110 00111124455545566654 66666543
No 334
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.11 E-value=0.21 Score=41.08 Aligned_cols=101 Identities=17% Similarity=0.123 Sum_probs=54.9
Q ss_pred CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688 61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 139 (235)
Q Consensus 61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~ 139 (235)
++.+|+-+|+|. |..+...++.. .++|+++|.++.-++.+...+. ..+.....+...+.-.-..+|+|+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g-------~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFG-------GRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcC-------ceeEeccCCHHHHHHHHccCCEEEEc
Confidence 457799999985 66666555543 3489999999876665544321 11111111111111012468999965
Q ss_pred ccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
....--+.+.-+-++..+.++||+.++-..
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 322111122222355667789988776544
No 335
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.77 E-value=1.3 Score=34.79 Aligned_cols=100 Identities=18% Similarity=0.078 Sum_probs=58.5
Q ss_pred CCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe--cccccCCCCCCcee
Q 026688 58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR--ADISRLPFASSSID 134 (235)
Q Consensus 58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~D 134 (235)
...++.+||-+|+|. |..+..+++..-...|+++|.++.-++.+++.-... -+.... ..+... .....+|
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~------~i~~~~~~~~~~~~-~~~~g~d 189 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA------LAEPEVLAERQGGL-QNGRGVD 189 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE------ecCchhhHHHHHHH-hCCCCCC
Confidence 334678999999875 666666666542224889999888777776521100 000000 000011 1123588
Q ss_pred EEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
+++-. ... ...++.+.++++|+|.+++...
T Consensus 190 ~vid~-----~G~-~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 190 VALEF-----SGA-TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred EEEEC-----CCC-hHHHHHHHHHhcCCCEEEEecc
Confidence 88732 211 2457888999999999987664
No 336
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.66 E-value=2 Score=32.28 Aligned_cols=113 Identities=15% Similarity=0.050 Sum_probs=65.0
Q ss_pred HHHHHhhcCCCCCCeEEEecCCCch--HHH--HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 50 FELMKGYLKPVLGGNIIDASCGSGL--FSR--IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 50 ~~~i~~~~~~~~~~~vLdiG~G~G~--~~~--~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
.+.|..+..-...+.++++.|+.|. .+. ..+.+.-..+++++-++++.+...++.+...++ ...++|+.++..+
T Consensus 30 aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~--~~~vEfvvg~~~e 107 (218)
T PF07279_consen 30 AEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL--SDVVEFVVGEAPE 107 (218)
T ss_pred HHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc--cccceEEecCCHH
Confidence 3444444444446789999665432 233 334444456999999999888888888876553 2346888887533
Q ss_pred -CCCCCCceeEEEecccccccCChHHHHHHHHHhc--cCCcEEEEEEe
Q 026688 126 -LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVL--RPGGVFVGTTY 170 (235)
Q Consensus 126 -~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L--~pgG~li~~~~ 170 (235)
.-..-...|.++...-. +.+..++.+.+ .|.|.+++...
T Consensus 108 ~~~~~~~~iDF~vVDc~~------~d~~~~vl~~~~~~~~GaVVV~~N 149 (218)
T PF07279_consen 108 EVMPGLKGIDFVVVDCKR------EDFAARVLRAAKLSPRGAVVVCYN 149 (218)
T ss_pred HHHhhccCCCEEEEeCCc------hhHHHHHHHHhccCCCceEEEEec
Confidence 21112457877743322 22232333433 35677666543
No 337
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.49 E-value=1.5 Score=36.49 Aligned_cols=106 Identities=19% Similarity=0.196 Sum_probs=71.2
Q ss_pred CCCCeEEEecC-CCc------hHHHHHHHcCCCceEEEEeCC-HHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----
Q 026688 60 VLGGNIIDASC-GSG------LFSRIFAKSGLFSLVVALDYS-ENMLKQCYEFVQQESNFPKENFLLVRADISRLP---- 127 (235)
Q Consensus 60 ~~~~~vLdiG~-G~G------~~~~~l~~~~~~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---- 127 (235)
.++..|+=+|- |+| .++.++.+++...-++++|.- |.++++.+...... ++.|+..+-...|
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~------~v~~f~~~~~~~Pv~Ia 171 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQV------GVPFFGSGTEKDPVEIA 171 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHc------CCceecCCCCCCHHHHH
Confidence 34677888875 554 445566666666678899974 88888888776543 4555555433333
Q ss_pred ------CCCCceeEEEecccc-cccCCh-HHHHHHHHHhccCCcEEEEEEec
Q 026688 128 ------FASSSIDAVHAGAAI-HCWSSP-STGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 128 ------~~~~~~D~i~~~~~l-~~~~~~-~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
+....||+|++...= +|+++. -.-++++++.++|.=.|++.+..
T Consensus 172 k~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam 223 (451)
T COG0541 172 KAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAM 223 (451)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 224679999986553 334332 36789999999999888887754
No 338
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=93.47 E-value=2.3 Score=36.59 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=76.9
Q ss_pred CCCCHHHHHHHHhhcCCC--CCCeEEEecCCCchHHHHHHHc---C-CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCe
Q 026688 43 FPGPEKEFELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKS---G-LFSLVVALDYSENMLKQCYEFVQQESNFPKENF 116 (235)
Q Consensus 43 ~~~~~~~~~~i~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~---~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 116 (235)
+..+.+..+.+.+.+.+. +...|.|..||+|.+.....+. + ....++|.+..+.+...++.++..++.. ....
T Consensus 197 ~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~-~~t~ 275 (501)
T TIGR00497 197 FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID-YANF 275 (501)
T ss_pred eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC-cccc
Confidence 344566666666665543 4578999999999988754432 1 1246999999999999999876544321 1122
Q ss_pred eEEecccccC-CC-CCCceeEEEecccc--------------------ccc----CCh-HHHHHHHHHhccCCcEEEEEE
Q 026688 117 LLVRADISRL-PF-ASSSIDAVHAGAAI--------------------HCW----SSP-STGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 117 ~~~~~d~~~~-~~-~~~~~D~i~~~~~l--------------------~~~----~~~-~~~l~~~~~~L~pgG~li~~~ 169 (235)
....+|.... .. ....||.|+++-.+ .|+ .+. ..++..+...|++||...++-
T Consensus 276 ~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 276 NIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred CcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 2223333221 11 12457777754311 111 111 377889999999999876655
Q ss_pred ec
Q 026688 170 YI 171 (235)
Q Consensus 170 ~~ 171 (235)
+.
T Consensus 356 ~~ 357 (501)
T TIGR00497 356 FP 357 (501)
T ss_pred cC
Confidence 53
No 339
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=93.46 E-value=2.6 Score=33.80 Aligned_cols=131 Identities=8% Similarity=0.026 Sum_probs=65.6
Q ss_pred HhhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec-ccccCCCCCC
Q 026688 54 KGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPFASS 131 (235)
Q Consensus 54 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~ 131 (235)
...+...++.+|+-+|+|. |......+.......++.+|.+++-.+...+.+. ...... +..+. -.
T Consensus 170 ~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g---------~~~~~~~~~~~~---l~ 237 (311)
T cd05213 170 EKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELG---------GNAVPLDELLEL---LN 237 (311)
T ss_pred HHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcC---------CeEEeHHHHHHH---Hh
Confidence 3333334578999999986 5544444333212479999998765433322221 112221 22211 24
Q ss_pred ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHH
Q 026688 132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 210 (235)
Q Consensus 132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 210 (235)
.+|+|+....-.+. ...+..+.+....++.+++....+.+. .|... .-.....++.++|+.+.++
T Consensus 238 ~aDvVi~at~~~~~---~~~~~~~~~~~~~~~~~viDlavPrdi---~~~v~--------~l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 238 EADVVISATGAPHY---AKIVERAMKKRSGKPRLIVDLAVPRDI---EPEVG--------ELEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred cCCEEEECCCCCch---HHHHHHHHhhCCCCCeEEEEeCCCCCC---chhhc--------cCCCcEEEEHHHhHHHHHH
Confidence 57999976554433 233344433333345666544433221 11111 0123456788888887664
No 340
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.39 E-value=0.12 Score=43.18 Aligned_cols=108 Identities=22% Similarity=0.214 Sum_probs=78.7
Q ss_pred CCCCeEEEecCCCchHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC----CCCCCcee
Q 026688 60 VLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSSID 134 (235)
Q Consensus 60 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D 134 (235)
.++.+|||.=|++|--++.+++..+. .++++-|.++..+...+++...++. ...+.....|+..+ +-....||
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v--~~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV--EDIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc--hhhcccccchHHHHHHhccccccccc
Confidence 34678999999999888888887654 5799999999999999988876542 22344555555432 22346788
Q ss_pred EEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688 135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
+|=+ .-+..+-.+|+.+.+.++.||.|.++.....
T Consensus 186 vIDL----DPyGs~s~FLDsAvqav~~gGLL~vT~TD~a 220 (525)
T KOG1253|consen 186 VIDL----DPYGSPSPFLDSAVQAVRDGGLLCVTCTDMA 220 (525)
T ss_pred eEec----CCCCCccHHHHHHHHHhhcCCEEEEEecchH
Confidence 8763 2233456889999999999999999776543
No 341
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.97 E-value=2.4 Score=34.17 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=58.6
Q ss_pred cCCCCCCeEEEecCCC-chHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C-CCCCc
Q 026688 57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-FASSS 132 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~ 132 (235)
+...++.+||-.|+|. |..+..+++.. .++ +++++.+++-.+.+++. .. ..-+.....+.... . .....
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~-ga-----~~~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKAL-GA-----DFVINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-CC-----CEEEcCCcchHHHHHHHhCCCC
Confidence 4455688999998864 56666666654 345 99999998877777542 11 00011100111011 0 12246
Q ss_pred eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 133 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 133 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
+|+|+-... ....+....+.|+++|.+++...
T Consensus 232 ~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 232 ADVAIECSG------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CCEEEECCC------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 898884221 12345677889999999987654
No 342
>PLN02740 Alcohol dehydrogenase-like
Probab=92.97 E-value=2.5 Score=34.93 Aligned_cols=99 Identities=14% Similarity=0.129 Sum_probs=59.4
Q ss_pred cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc-----ccc-C-CC
Q 026688 57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-----ISR-L-PF 128 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-----~~~-~-~~ 128 (235)
....++.+||-+|+|. |..+..+++......|+++|.+++-++.+++. + . . .++... ..+ . ..
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----G---a-~-~~i~~~~~~~~~~~~v~~~ 264 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----G---I-T-DFINPKDSDKPVHERIREM 264 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----C---C-c-EEEecccccchHHHHHHHH
Confidence 3455688999999875 66666677664222699999999888888652 1 1 1 111111 111 0 01
Q ss_pred CCCceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEe
Q 026688 129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 170 (235)
Q Consensus 129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~ 170 (235)
..+.+|+|+-... .+ ..+....+.+++| |.+++...
T Consensus 265 ~~~g~dvvid~~G-----~~-~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 265 TGGGVDYSFECAG-----NV-EVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred hCCCCCEEEECCC-----Ch-HHHHHHHHhhhcCCCEEEEEcc
Confidence 1226898884222 22 4577788888886 88877554
No 343
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.90 E-value=1.5 Score=29.33 Aligned_cols=90 Identities=19% Similarity=0.242 Sum_probs=57.8
Q ss_pred CCeEEEecCCCc-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC-CCceeEEEec
Q 026688 62 GGNIIDASCGSG-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAG 139 (235)
Q Consensus 62 ~~~vLdiG~G~G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~i~~~ 139 (235)
.++|+|+|.|-= ..+..+++++. .++++|+.+. .+ ...++++..|+.+.... =...|+|.+
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~--dv~atDI~~~---~a-----------~~g~~~v~DDitnP~~~iY~~A~lIYS- 76 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGF--DVLATDINEK---TA-----------PEGLRFVVDDITNPNISIYEGADLIYS- 76 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCC--cEEEEecccc---cC-----------cccceEEEccCCCccHHHhhCccceee-
Confidence 469999999874 45667777764 8999999875 11 23678999999873211 034566654
Q ss_pred ccccccCChHHHHHHHHHhccC-CcEEEEEEeccC
Q 026688 140 AAIHCWSSPSTGVAEISRVLRP-GGVFVGTTYIVD 173 (235)
Q Consensus 140 ~~l~~~~~~~~~l~~~~~~L~p-gG~li~~~~~~~ 173 (235)
+..+..+.+.+.++.+. |..+++.....+
T Consensus 77 -----iRpppEl~~~ildva~aVga~l~I~pL~Ge 106 (129)
T COG1255 77 -----IRPPPELQSAILDVAKAVGAPLYIKPLTGE 106 (129)
T ss_pred -----cCCCHHHHHHHHHHHHhhCCCEEEEecCCC
Confidence 44454555555555554 556777666554
No 344
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=92.90 E-value=0.19 Score=36.90 Aligned_cols=96 Identities=11% Similarity=0.141 Sum_probs=51.9
Q ss_pred HHHhhcCCCCC-CeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC---
Q 026688 52 LMKGYLKPVLG-GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--- 127 (235)
Q Consensus 52 ~i~~~~~~~~~-~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--- 127 (235)
.+.+++...++ ..|+.+|||.-.....+....+...++-+|. |++++.-++.+...+.....+.+++..|+.+..
T Consensus 68 ~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~ 146 (183)
T PF04072_consen 68 AVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWID 146 (183)
T ss_dssp HHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHH
T ss_pred HHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHH
Confidence 34444533233 4899999999888887877655445555554 556666666655431100123567888887521
Q ss_pred ------CCCCceeEEEecccccccCCh
Q 026688 128 ------FASSSIDAVHAGAAIHCWSSP 148 (235)
Q Consensus 128 ------~~~~~~D~i~~~~~l~~~~~~ 148 (235)
+..+..-++++-+++.+++..
T Consensus 147 ~L~~~g~~~~~ptl~i~Egvl~Yl~~~ 173 (183)
T PF04072_consen 147 ALPKAGFDPDRPTLFIAEGVLMYLSPE 173 (183)
T ss_dssp HHHHCTT-TTSEEEEEEESSGGGS-HH
T ss_pred HHHHhCCCCCCCeEEEEcchhhcCCHH
Confidence 223455566666777776533
No 345
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.65 E-value=1.6 Score=36.49 Aligned_cols=103 Identities=10% Similarity=0.023 Sum_probs=64.1
Q ss_pred CHHHHHHHHhhcCC-CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688 46 PEKEFELMKGYLKP-VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 123 (235)
Q Consensus 46 ~~~~~~~i~~~~~~-~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 123 (235)
.+...+.+....+. .++++|+-+|+|. |......++.. .++|+++|.++.-++.|+.. ..... +.
T Consensus 185 g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~----------G~~~~--~~ 251 (413)
T cd00401 185 RESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME----------GYEVM--TM 251 (413)
T ss_pred chhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc----------CCEEc--cH
Confidence 34455666665543 4589999999998 66555555442 35899999998777766541 11111 12
Q ss_pred ccCCCCCCceeEEEecccccccCChHHHHHH-HHHhccCCcEEEEEEe
Q 026688 124 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAE-ISRVLRPGGVFVGTTY 170 (235)
Q Consensus 124 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~-~~~~L~pgG~li~~~~ 170 (235)
.+. -...|+|+... ..+ ..+.. ..+.+++||.++....
T Consensus 252 ~e~---v~~aDVVI~at-----G~~-~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 252 EEA---VKEGDIFVTTT-----GNK-DIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred HHH---HcCCCEEEECC-----CCH-HHHHHHHHhcCCCCcEEEEeCC
Confidence 111 13579998532 222 34544 5889999999987653
No 346
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=92.58 E-value=3 Score=34.71 Aligned_cols=106 Identities=17% Similarity=0.169 Sum_probs=60.8
Q ss_pred cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec---cccc-C-C-CC
Q 026688 57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---DISR-L-P-FA 129 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~~~-~-~-~~ 129 (235)
....++.+||-.|+|. |..+..+++..--..++.+|.++.-++.+++. + . . .+... +..+ + . ..
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----G---a-~-~v~~~~~~~~~~~v~~~~~ 251 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----G---C-E-TVDLSKDATLPEQIEQILG 251 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----C---C-e-EEecCCcccHHHHHHHHcC
Confidence 3445578888888875 66666666653222466778888777777662 1 1 1 11111 1111 0 0 12
Q ss_pred CCceeEEEecccccc--------cCChHHHHHHHHHhccCCcEEEEEEec
Q 026688 130 SSSIDAVHAGAAIHC--------WSSPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~--------~~~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
...+|+++-...... ..++...++.+.+++++||.+++....
T Consensus 252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred CCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 245898884333210 011224788999999999999986653
No 347
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.50 E-value=1.5 Score=33.80 Aligned_cols=99 Identities=23% Similarity=0.274 Sum_probs=59.1
Q ss_pred CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-CCCCCceeEE
Q 026688 60 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-PFASSSIDAV 136 (235)
Q Consensus 60 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~i 136 (235)
.++.+||..|+|+ |.....+++.. ..++++++.++...+.+++.-.. .-+.....+... . ....+.+|++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~d~v 205 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGAD------HVIDYKEEDLEEELRLTGGGGADVV 205 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCc------eeccCCcCCHHHHHHHhcCCCCCEE
Confidence 5678999999986 66666666654 35899999998777766542100 000000001100 0 0123568999
Q ss_pred EecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688 137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 137 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
+....- ...+..+.+.++++|.++.....
T Consensus 206 i~~~~~------~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 206 IDAVGG------PETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred EECCCC------HHHHHHHHHhcccCCEEEEEccC
Confidence 853221 13567788899999998876543
No 348
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=92.43 E-value=1 Score=35.64 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc
Q 026688 43 FPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 108 (235)
Q Consensus 43 ~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 108 (235)
...+..+.+.+... ...++..|||.=+|+|..+......+. .++|+|+++..++.+.+++...
T Consensus 205 ~~~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r--~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 205 AQKPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR--RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC--ceEEEecCHHHHHHHHHHHHhh
Confidence 34456677777776 455689999999999999999888876 8999999999999999998764
No 349
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=92.37 E-value=2 Score=35.15 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=53.1
Q ss_pred CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe-cccccCCCCCCceeEEE
Q 026688 60 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAVH 137 (235)
Q Consensus 60 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~i~ 137 (235)
.++.+||-.|+|. |..+..+++.. .+.+++++.++.-...+.+.+ + . . .++. .+........+.+|+++
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~---G---a-~-~vi~~~~~~~~~~~~~~~D~vi 252 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRL---G---A-D-SFLVSTDPEKMKAAIGTMDYII 252 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhC---C---C-c-EEEcCCCHHHHHhhcCCCCEEE
Confidence 4578888899875 66666666654 347888887765433222221 1 1 0 1111 11001100012478887
Q ss_pred ecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
-.. .. ...+..+.+++++||.++....
T Consensus 253 d~~-----g~-~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 253 DTV-----SA-VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred ECC-----CC-HHHHHHHHHHhcCCcEEEEeCC
Confidence 322 22 2357788999999999987643
No 350
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=92.36 E-value=0.54 Score=40.69 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=58.9
Q ss_pred CCCCeEEEecCCCchHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC----C----CCC
Q 026688 60 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----P----FAS 130 (235)
Q Consensus 60 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~----~~~ 130 (235)
.+...|||+||.+|.+++-..+..| ...|+|+|+-|- .. .+++...+.|+... + ...
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi---------kp-----~~~c~t~v~dIttd~cr~~l~k~l~t 108 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI---------KP-----IPNCDTLVEDITTDECRSKLRKILKT 108 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec---------cc-----CCccchhhhhhhHHHHHHHHHHHHHh
Confidence 4478999999999999998888765 357899998651 00 23444444454321 1 112
Q ss_pred CceeEEEecccccc----cCCh-------HHHHHHHHHhccCCcEEEEEEe
Q 026688 131 SSIDAVHAGAAIHC----WSSP-------STGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 131 ~~~D~i~~~~~l~~----~~~~-------~~~l~~~~~~L~pgG~li~~~~ 170 (235)
-+.|+|+..++-.. ..+. ...++.+...|..||.++--.+
T Consensus 109 ~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvf 159 (780)
T KOG1098|consen 109 WKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVF 159 (780)
T ss_pred CCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccc
Confidence 34577775432211 1111 2567778889999999554333
No 351
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.33 E-value=1 Score=30.65 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=46.9
Q ss_pred CCeEEEecCCCc-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCC-CCceeEEEec
Q 026688 62 GGNIIDASCGSG-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAG 139 (235)
Q Consensus 62 ~~~vLdiG~G~G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~i~~~ 139 (235)
..+|+|+|-|.= ..+..|.+++- .|+++|+.+. .+ ...+.++..|+.+..+. =...|+|.+.
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G~--dV~~tDi~~~---~a-----------~~g~~~v~DDif~P~l~iY~~a~lIYSi 77 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERGF--DVIATDINPR---KA-----------PEGVNFVVDDIFNPNLEIYEGADLIYSI 77 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S------------------STTEE---SSS--HHHHTTEEEEEEE
T ss_pred CCcEEEECcCCCHHHHHHHHHcCC--cEEEEECccc---cc-----------ccCcceeeecccCCCHHHhcCCcEEEEe
Confidence 469999999974 56667777764 9999999986 11 22577888998763211 1357777753
Q ss_pred ccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688 140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
.. -++.+..+.++.+.+ |.-+++.....+
T Consensus 78 RP---P~El~~~il~lA~~v--~adlii~pL~~e 106 (127)
T PF03686_consen 78 RP---PPELQPPILELAKKV--GADLIIRPLGGE 106 (127)
T ss_dssp S-----TTSHHHHHHHHHHH--T-EEEEE-BTTB
T ss_pred CC---ChHHhHHHHHHHHHh--CCCEEEECCCCC
Confidence 21 112233444444433 467777666543
No 352
>PRK11524 putative methyltransferase; Provisional
Probab=92.26 E-value=0.2 Score=39.67 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=38.4
Q ss_pred CCeeEEecccccC--CCCCCceeEEEecccccc---cCC-------------hHHHHHHHHHhccCCcEEEEE
Q 026688 114 ENFLLVRADISRL--PFASSSIDAVHAGAAIHC---WSS-------------PSTGVAEISRVLRPGGVFVGT 168 (235)
Q Consensus 114 ~~~~~~~~d~~~~--~~~~~~~D~i~~~~~l~~---~~~-------------~~~~l~~~~~~L~pgG~li~~ 168 (235)
....++++|..+. .++.+++|+|++.--+.. ..+ ....+.++.++|+|||.+++.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3456788888773 356788999998532210 000 136889999999999999985
No 353
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=92.15 E-value=2.2 Score=34.72 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=60.0
Q ss_pred cCCCCCCeEEEecC-C-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec-cccc-C-CCCCC
Q 026688 57 LKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISR-L-PFASS 131 (235)
Q Consensus 57 ~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~ 131 (235)
....++.+||-.|+ | .|..+..+++.. .+++++++.++.-.+.+++.+.. ..-+..... +..+ . ....+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa-----~~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGF-----DEAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCC-----CEEEECCCcccHHHHHHHHCCC
Confidence 34556889999988 3 477777777764 35899999888777766533221 000111101 1111 0 01123
Q ss_pred ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
.+|+++-... ...+..+.++++++|.+++..
T Consensus 228 gvD~v~d~vG-------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 228 GIDIYFDNVG-------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CcEEEEECCC-------HHHHHHHHHHhccCCEEEEEC
Confidence 6888884221 135788899999999998754
No 354
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.06 E-value=2.3 Score=33.55 Aligned_cols=75 Identities=23% Similarity=0.238 Sum_probs=55.8
Q ss_pred CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688 62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F 128 (235)
Q Consensus 62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~ 128 (235)
+..||-=|+|.| ..+..+++++. ++...|++++..+...+.+...+ .+....+|+.+.. -
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g-----~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIG-----EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcC-----ceeEEEecCCCHHHHHHHHHHHHH
Confidence 678888888887 45667788876 89999999888888777766532 5778888887632 1
Q ss_pred CCCceeEEEeccccc
Q 026688 129 ASSSIDAVHAGAAIH 143 (235)
Q Consensus 129 ~~~~~D~i~~~~~l~ 143 (235)
.-+..|+++.+..+-
T Consensus 111 e~G~V~ILVNNAGI~ 125 (300)
T KOG1201|consen 111 EVGDVDILVNNAGIV 125 (300)
T ss_pred hcCCceEEEeccccc
Confidence 236899999876653
No 355
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=92.00 E-value=3.1 Score=33.71 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=57.0
Q ss_pred CCCCCCeEEEecCCC-chHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--CCCCCce
Q 026688 58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSI 133 (235)
Q Consensus 58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~ 133 (235)
...++.+||-.|+|. |..+..+++.. .+. +++++.+++-++.+++. ... .-+.....+.... ......+
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~-Ga~-----~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKSL-GAM-----QTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHc-CCc-----eEecCcccCHHHHHHHhcCCCC
Confidence 344578999999865 66666666654 334 78999988877776542 110 0001010010100 0122356
Q ss_pred e-EEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 134 D-AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 134 D-~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
| +|+- .... ...+....+++++||.+++...
T Consensus 230 d~~v~d-----~~G~-~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 230 DQLILE-----TAGV-PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CeEEEE-----CCCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 6 5542 1221 3467888999999999988754
No 356
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.99 E-value=4.2 Score=30.73 Aligned_cols=103 Identities=20% Similarity=0.194 Sum_probs=59.3
Q ss_pred CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC----
Q 026688 62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---- 129 (235)
Q Consensus 62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---- 129 (235)
+++||-.|++.| .....+++.+. .|++++.++..++...+.... ..++.+...|+.+.. +.
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNENKLKRMKKTLSK-----YGNIHYVVGDVSSTESARNVIEKAAK 77 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh-----cCCeEEEECCCCCHHHHHHHHHHHHH
Confidence 568888888643 22333444454 899999988766655444332 225777888887532 00
Q ss_pred -CCceeEEEecccccccC---C--------------hHHHHHHHHHhccCCcEEEEEEec
Q 026688 130 -SSSIDAVHAGAAIHCWS---S--------------PSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 130 -~~~~D~i~~~~~l~~~~---~--------------~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
-+..|.++......... + +...++.+.+.++++|.+++....
T Consensus 78 ~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~ 137 (238)
T PRK05786 78 VLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM 137 (238)
T ss_pred HhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 13468887654322110 0 113356666777788877776543
No 357
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=91.83 E-value=0.82 Score=32.50 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=32.2
Q ss_pred EecCCCc--hHHHHHH--HcCCCceEEEEeCCHHHHHHHHHH--hhhcCCCCCCCeeEEeccc
Q 026688 67 DASCGSG--LFSRIFA--KSGLFSLVVALDYSENMLKQCYEF--VQQESNFPKENFLLVRADI 123 (235)
Q Consensus 67 diG~G~G--~~~~~l~--~~~~~~~v~~~D~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~d~ 123 (235)
|||++.| .....+. ..++...++++|++|...+..+++ +..... ...+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~--~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDK--DGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTT--STTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCC--CceEEEEEeec
Confidence 8999999 6655553 456677999999999999998888 544321 12355554443
No 358
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=91.81 E-value=1.9 Score=34.80 Aligned_cols=94 Identities=20% Similarity=0.288 Sum_probs=57.0
Q ss_pred CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec---ccccCCCCCCceeEE
Q 026688 61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---DISRLPFASSSIDAV 136 (235)
Q Consensus 61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~D~i 136 (235)
++.+||..|+|. |..+..+++......+++++.++...+.+++. . . . .++.. ++.......+.+|++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g------~-~-~vi~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-G------A-D-ETVNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-C------C-C-EEEcCCchhhhhhhccCCCccEE
Confidence 678899988875 66666676654222789999888877765542 1 1 0 11111 111111112458998
Q ss_pred EecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 137 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
+..... ...++.+.+.|+++|.++...
T Consensus 236 ld~~g~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 236 FEASGA------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 853321 235778899999999988654
No 359
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=91.78 E-value=1.3 Score=35.00 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=56.1
Q ss_pred CCeEEEecCCC--chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe-cccccCCCCCCceeEEEe
Q 026688 62 GGNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAVHA 138 (235)
Q Consensus 62 ~~~vLdiG~G~--G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~i~~ 138 (235)
..+|+-+|.|. |.++..+.+.+....+++.|.+...++.+... .+.... .+.... .....|+|+.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----------gv~d~~~~~~~~~--~~~~aD~Viv 70 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----------GVIDELTVAGLAE--AAAEADLVIV 70 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----------Ccccccccchhhh--hcccCCEEEE
Confidence 35788899885 56677778888877889999988877777642 222221 111111 2345799986
Q ss_pred cccccccCChHHHHHHHHHhccCCcEEE
Q 026688 139 GAAIHCWSSPSTGVAEISRVLRPGGVFV 166 (235)
Q Consensus 139 ~~~l~~~~~~~~~l~~~~~~L~pgG~li 166 (235)
.--+.. ...+++++...|+||..+.
T Consensus 71 avPi~~---~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 71 AVPIEA---TEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred eccHHH---HHHHHHHhcccCCCCCEEE
Confidence 433332 2466777777777765554
No 360
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=91.77 E-value=2 Score=34.31 Aligned_cols=90 Identities=20% Similarity=0.217 Sum_probs=51.2
Q ss_pred CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688 62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 139 (235)
Q Consensus 62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~ 139 (235)
..+|.-||+|. | .++..+.+.+....|+++|.+++.++.+++. + .... ...+..+. ....|+|+..
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g----~~~~-~~~~~~~~---~~~aDvViia 73 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----G----LGDR-VTTSAAEA---VKGADLVILC 73 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----C----CCce-ecCCHHHH---hcCCCEEEEC
Confidence 36799999986 3 3444555555334799999999877666531 1 0111 11222111 1357888865
Q ss_pred ccccccCChHHHHHHHHHhccCCcEEE
Q 026688 140 AAIHCWSSPSTGVAEISRVLRPGGVFV 166 (235)
Q Consensus 140 ~~l~~~~~~~~~l~~~~~~L~pgG~li 166 (235)
-.... ...+++.+...+++++.++
T Consensus 74 vp~~~---~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 74 VPVGA---SGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred CCHHH---HHHHHHHHHhhCCCCCEEE
Confidence 43321 1345666767778876554
No 361
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=91.65 E-value=0.79 Score=35.69 Aligned_cols=77 Identities=19% Similarity=0.221 Sum_probs=44.7
Q ss_pred HHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecccccccCChHHHHHHH
Q 026688 76 SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEI 155 (235)
Q Consensus 76 ~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~ 155 (235)
+..+.+.++..+|+|+|.++..++.+.+. .-+.-...+... -..+|+|+..-.+.. ...+++++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~---------g~~~~~~~~~~~----~~~~DlvvlavP~~~---~~~~l~~~ 65 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL---------GIIDEASTDIEA----VEDADLVVLAVPVSA---IEDVLEEI 65 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT---------TSSSEEESHHHH----GGCCSEEEE-S-HHH---HHHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC---------CCeeeccCCHhH----hcCCCEEEEcCCHHH---HHHHHHHh
Confidence 56788888888999999999998888652 112222222111 134699996544332 23566667
Q ss_pred HHhccCCcEEEEE
Q 026688 156 SRVLRPGGVFVGT 168 (235)
Q Consensus 156 ~~~L~pgG~li~~ 168 (235)
...+++|+.+.=.
T Consensus 66 ~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 66 APYLKPGAIVTDV 78 (258)
T ss_dssp HCGS-TTSEEEE-
T ss_pred hhhcCCCcEEEEe
Confidence 7767666555533
No 362
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.55 E-value=3.3 Score=30.51 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=61.5
Q ss_pred HHHhhcCCCCCCeEEEecCC-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCC
Q 026688 52 LMKGYLKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 130 (235)
Q Consensus 52 ~i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 130 (235)
.+........++++|-+|.- +|.+...++.. ..+|+.+|+.|.+-... ..+++|... ..+..
T Consensus 35 ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~l-----------p~~v~Fr~~----~~~~~ 97 (254)
T COG4017 35 AIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGFL-----------PNNVKFRNL----LKFIR 97 (254)
T ss_pred HhhhhhcccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhcC-----------CCCccHhhh----cCCCC
Confidence 34433333447899999985 57777666654 34999999999764332 234555433 23346
Q ss_pred CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688 131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
+.+|+|+-...+.-.. | +..+-+.| +.+++.++..+
T Consensus 98 G~~DlivDlTGlGG~~-P-----e~L~~fnp-~vfiVEdP~gn 133 (254)
T COG4017 98 GEVDLIVDLTGLGGIE-P-----EFLAKFNP-KVFIVEDPKGN 133 (254)
T ss_pred CceeEEEeccccCCCC-H-----HHHhccCC-ceEEEECCCCC
Confidence 8899999877666432 2 34455566 57777777653
No 363
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=91.35 E-value=1 Score=37.16 Aligned_cols=53 Identities=8% Similarity=-0.097 Sum_probs=38.0
Q ss_pred HHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhh
Q 026688 52 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 106 (235)
Q Consensus 52 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~ 106 (235)
.-.+.++..++.+||-|++|....+.. +...| .+|++||++|..+...+=+++
T Consensus 26 vD~~aL~i~~~d~vl~ItSaG~N~L~y-L~~~P-~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 26 VDMEALNIGPDDRVLTITSAGCNALDY-LLAGP-KRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHHHhCCCCCCeEEEEccCCchHHHH-HhcCC-ceEEEEeCCHHHHHHHHHHHH
Confidence 345567777789999998775554444 44555 599999999988877665444
No 364
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=91.34 E-value=4.8 Score=32.59 Aligned_cols=107 Identities=17% Similarity=0.133 Sum_probs=65.7
Q ss_pred HHHhhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec----ccccC
Q 026688 52 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA----DISRL 126 (235)
Q Consensus 52 ~i~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~----d~~~~ 126 (235)
.+.+..+..++.+|.-+|||. |-..+.-++..--..++++|+++.-++.|++.= -.+++.. |+-+.
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fG---------AT~~vn~~~~~~vv~~ 246 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFG---------ATHFVNPKEVDDVVEA 246 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcC---------CceeecchhhhhHHHH
Confidence 344555667788999999976 555555455433458999999999999998732 2223222 12110
Q ss_pred --CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688 127 --PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 127 --~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
.......|..+ +...+. ..++....++.++|..++.-....
T Consensus 247 i~~~T~gG~d~~~-----e~~G~~-~~~~~al~~~~~~G~~v~iGv~~~ 289 (366)
T COG1062 247 IVELTDGGADYAF-----ECVGNV-EVMRQALEATHRGGTSVIIGVAGA 289 (366)
T ss_pred HHHhcCCCCCEEE-----EccCCH-HHHHHHHHHHhcCCeEEEEecCCC
Confidence 12223455554 333333 367888888888998888665443
No 365
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.19 E-value=0.91 Score=37.16 Aligned_cols=124 Identities=10% Similarity=0.030 Sum_probs=79.3
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHH---HHHh----hhcCCCCCCCeeEEe
Q 026688 48 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC---YEFV----QQESNFPKENFLLVR 120 (235)
Q Consensus 48 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a---~~~~----~~~~~~~~~~~~~~~ 120 (235)
+.+..+.+.+...+...-.|+|+|-|.....++..+....-.|+++....-+.+ ++.. ...+.. ...++.+.
T Consensus 179 ~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~-~~~~~~i~ 257 (419)
T KOG3924|consen 179 EQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK-PNKIETIH 257 (419)
T ss_pred HHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC-cCceeecc
Confidence 445556677778888999999999999999888876656677887754322222 2211 122211 23467777
Q ss_pred cccccCC---CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688 121 ADISRLP---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 121 ~d~~~~~---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
+++.... .-....++|+++.+...- +...-+.++..-+++|-+++-..+...
T Consensus 258 gsf~~~~~v~eI~~eatvi~vNN~~Fdp-~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 258 GSFLDPKRVTEIQTEATVIFVNNVAFDP-ELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred cccCCHHHHHHHhhcceEEEEecccCCH-HHHHhhHHHHhhCCCcceEeccccccc
Confidence 7776532 112467888887776632 222335588999999999987666543
No 366
>PLN02827 Alcohol dehydrogenase-like
Probab=91.19 E-value=4.3 Score=33.51 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=57.4
Q ss_pred CCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec-----cccc-C-CCC
Q 026688 58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-----DISR-L-PFA 129 (235)
Q Consensus 58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-----d~~~-~-~~~ 129 (235)
...++.+||-.|+|. |..+..+++..-...++++|.++.-.+.+++. + . . .++.. +... + ...
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----G---a-~-~~i~~~~~~~~~~~~v~~~~ 260 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----G---V-T-DFINPNDLSEPIQQVIKRMT 260 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C---C-c-EEEcccccchHHHHHHHHHh
Confidence 445688999999865 66666666654223588999888877777542 1 1 1 11111 1111 0 011
Q ss_pred CCceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEe
Q 026688 130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 170 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~ 170 (235)
.+.+|+|+-... . ...+....+++++| |.+++...
T Consensus 261 ~~g~d~vid~~G-----~-~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 261 GGGADYSFECVG-----D-TGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CCCCCEEEECCC-----C-hHHHHHHHHhhccCCCEEEEECC
Confidence 225888873221 1 23577888899998 99987543
No 367
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=91.12 E-value=0.73 Score=35.86 Aligned_cols=47 Identities=17% Similarity=0.063 Sum_probs=35.1
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcC-----CCceEEEEeCCH
Q 026688 49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSE 95 (235)
Q Consensus 49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-----~~~~v~~~D~s~ 95 (235)
++..+.+.--..++..++|+|||.|.++..+++.. +...+..||...
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 34444443334557899999999999999998876 456899999854
No 368
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.94 E-value=1.1 Score=35.44 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=56.3
Q ss_pred CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-------CCCC-------CCCeeEEecccccC
Q 026688 63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------SNFP-------KENFLLVRADISRL 126 (235)
Q Consensus 63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~~~~-------~~~~~~~~~d~~~~ 126 (235)
++|.-||+|. | ..+..+++.+. .|+.+|.+++.++.+.++.... +... ..+++ ...+..+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~- 77 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLDLKA- 77 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCcHHH-
Confidence 3688899985 3 45556666665 8999999999998877643211 0000 00122 1222221
Q ss_pred CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688 127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
.....|+|+..-. ....-...++.++.+.++|+..+.....+
T Consensus 78 --~~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 78 --AVADADLVIEAVP-EKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred --hhcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 1245688884321 11111135677788888887665544433
No 369
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.79 E-value=6.1 Score=32.05 Aligned_cols=102 Identities=19% Similarity=0.276 Sum_probs=58.9
Q ss_pred cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-C-CCCCc
Q 026688 57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-P-FASSS 132 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~ 132 (235)
....++.+||-.|+|. |..+..+++......++++|.++...+.+++. +. ..-+.....+... . . .....
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~--~~~v~~~~~~~~~~i~~~~~~~~ 235 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----GA--TDIVDYKNGDVVEQILKLTGGKG 235 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CC--ceEecCCCCCHHHHHHHHhCCCC
Confidence 3445678899988764 66666666664323589999988777766642 10 0001111111100 0 1 12346
Q ss_pred eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 133 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 133 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
+|+++.... . ...+..+.+.|+++|.++....
T Consensus 236 ~d~vld~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 236 VDAVIIAGG-----G-QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CcEEEECCC-----C-HHHHHHHHHHhhcCCEEEEecc
Confidence 898884221 1 2457888999999999886543
No 370
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.72 E-value=0.52 Score=38.86 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=50.5
Q ss_pred CCCeeEEecccccC--CCCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccC
Q 026688 113 KENFLLVRADISRL--PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 113 ~~~~~~~~~d~~~~--~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
..++++.+.++.+. ..+.+++|.++......++++. .+.++++.+.++|||.+++-.....
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 45899999999874 2457899999999999988765 4889999999999999999776543
No 371
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.71 E-value=5.3 Score=30.88 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=43.9
Q ss_pred CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC----
Q 026688 62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---- 129 (235)
Q Consensus 62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---- 129 (235)
++++|-.|++.| .++..+++.+. +|+.++.++..++...+.+ ..++.++.+|+.+.. +.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASL-------GERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCeeEEEEecCCCHHHHHHHHHHHHH
Confidence 567888886543 23344555555 8999999876555444332 235777888887532 00
Q ss_pred -CCceeEEEecccc
Q 026688 130 -SSSIDAVHAGAAI 142 (235)
Q Consensus 130 -~~~~D~i~~~~~l 142 (235)
-+..|+++.+...
T Consensus 77 ~~g~id~lv~~ag~ 90 (261)
T PRK08265 77 RFGRVDILVNLACT 90 (261)
T ss_pred HhCCCCEEEECCCC
Confidence 1467998876543
No 372
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=90.59 E-value=6.5 Score=31.48 Aligned_cols=99 Identities=11% Similarity=0.001 Sum_probs=59.1
Q ss_pred hcCCCCCCeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEec-cccc-C-CCC
Q 026688 56 YLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRA-DISR-L-PFA 129 (235)
Q Consensus 56 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~-d~~~-~-~~~ 129 (235)
.....++.+||-.|+ |.|..+..+++.. .+++++++.+++-.+.+++ +. ... +..... +..+ . ...
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~-lG------a~~vi~~~~~~~~~~~~~~~~ 204 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKK-LG------FDVAFNYKTVKSLEETLKKAS 204 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH-cC------CCEEEeccccccHHHHHHHhC
Confidence 344556789998884 3577777777764 3589999988887777754 21 111 111100 1111 0 111
Q ss_pred CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
.+.+|+++-. ... ..+....++++++|.++...
T Consensus 205 ~~gvdvv~d~-----~G~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 205 PDGYDCYFDN-----VGG--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CCCeEEEEEC-----CCH--HHHHHHHHHhCcCcEEEEec
Confidence 2468888832 221 24578899999999999754
No 373
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.96 E-value=1.5 Score=34.81 Aligned_cols=96 Identities=15% Similarity=0.253 Sum_probs=57.0
Q ss_pred CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-------CCCCC-------CCeeEEecccccC
Q 026688 63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------SNFPK-------ENFLLVRADISRL 126 (235)
Q Consensus 63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~~~~~-------~~~~~~~~d~~~~ 126 (235)
.+|--||+|+ | ..+..++..+. .|+.+|.+++.++.+.+++... +.... .+++ ...|...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH-
Confidence 4788999996 3 45556666665 9999999999998877664321 10000 0111 2233321
Q ss_pred CCCCCceeEEEecccccccCCh----HHHHHHHHHhc-cCCcEEEEEEe
Q 026688 127 PFASSSIDAVHAGAAIHCWSSP----STGVAEISRVL-RPGGVFVGTTY 170 (235)
Q Consensus 127 ~~~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L-~pgG~li~~~~ 170 (235)
-...|+|+ +.+++. ..++..+.+++ +|+..+.-.+.
T Consensus 82 ---~~~~d~Vi-----Eav~E~~~~K~~l~~~l~~~~~~~~~il~snTS 122 (286)
T PRK07819 82 ---FADRQLVI-----EAVVEDEAVKTEIFAELDKVVTDPDAVLASNTS 122 (286)
T ss_pred ---hCCCCEEE-----EecccCHHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 24568777 333332 46778888888 67665554333
No 374
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=89.90 E-value=8.2 Score=30.88 Aligned_cols=99 Identities=17% Similarity=0.093 Sum_probs=58.1
Q ss_pred cCCCCCCeEEEecCC-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeE
Q 026688 57 LKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA 135 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 135 (235)
....++.+||-.|+| .|..+..+++.. ..++++++.++...+.+++. .. ..-+.....+... . ..+.+|+
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~-g~-----~~~~~~~~~~~~~-~-~~~~~d~ 228 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKL-GA-----DEVVDSGAELDEQ-A-AAGGADV 228 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHh-CC-----cEEeccCCcchHH-h-ccCCCCE
Confidence 344557889999887 466666666653 34899999998887776432 11 0000000001100 0 1245888
Q ss_pred EEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
++.... . ...+..+.+.|+++|.++....
T Consensus 229 vi~~~~-----~-~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 229 ILVTVV-----S-GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred EEECCC-----c-HHHHHHHHHhcccCCEEEEECC
Confidence 874321 1 2357788899999998887643
No 375
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=89.89 E-value=8.5 Score=30.70 Aligned_cols=99 Identities=15% Similarity=0.105 Sum_probs=59.2
Q ss_pred hcCCCCCCeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEeccccc-C-CCCC
Q 026688 56 YLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISR-L-PFAS 130 (235)
Q Consensus 56 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d~~~-~-~~~~ 130 (235)
.....++.+||-.|+ |.|..+..+++.. .+++++++.+++-.+.+++ +. ... +.....+..+ . ....
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~-~G------a~~vi~~~~~~~~~~v~~~~~ 209 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE-LG------FDAVFNYKTVSLEEALKEAAP 209 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH-cC------CCEEEeCCCccHHHHHHHHCC
Confidence 344556789988884 3477777777764 4589999988887777765 21 111 1111111111 0 1112
Q ss_pred CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
..+|+|+-.. . ...+....+.++++|.++...
T Consensus 210 ~gvd~vld~~-----g--~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 210 DGIDCYFDNV-----G--GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred CCcEEEEECC-----C--HHHHHHHHHhhccCCEEEEEc
Confidence 4688888421 1 145788899999999998654
No 376
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=89.69 E-value=7 Score=31.92 Aligned_cols=97 Identities=16% Similarity=0.089 Sum_probs=54.0
Q ss_pred CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEe
Q 026688 60 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 138 (235)
Q Consensus 60 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 138 (235)
.++.+||-.|+|. |..+..+++.. ...+++++.+++..+.+.+.+.. ...+...+...+......+|+++-
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~Ga-------~~~i~~~~~~~~~~~~~~~D~vid 250 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHLGA-------DDYLVSSDAAEMQEAADSLDYIID 250 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhcCC-------cEEecCCChHHHHHhcCCCcEEEE
Confidence 4577888888764 66666666654 34788888877655554433211 101111110111000124787773
Q ss_pred cccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 139 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 139 ~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
. ... ...+..+.+.++++|.++....
T Consensus 251 ~-----~g~-~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 251 T-----VPV-FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred C-----CCc-hHHHHHHHHHhccCCEEEEECC
Confidence 2 211 2457788899999999887654
No 377
>PRK07109 short chain dehydrogenase; Provisional
Probab=89.58 E-value=9.7 Score=30.86 Aligned_cols=75 Identities=23% Similarity=0.241 Sum_probs=47.8
Q ss_pred CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-C---------
Q 026688 62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F--------- 128 (235)
Q Consensus 62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~--------- 128 (235)
+++||-.|++.| .++..+++++. +|+.++.+++.++...+.+... ..++.++..|+.+.. .
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~----g~~~~~v~~Dv~d~~~v~~~~~~~~~ 81 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAA----GGEALAVVADVADAEAVQAAADRAEE 81 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHc----CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 467888887554 22334555554 8999999888777666655443 235777888886532 0
Q ss_pred CCCceeEEEecccc
Q 026688 129 ASSSIDAVHAGAAI 142 (235)
Q Consensus 129 ~~~~~D~i~~~~~l 142 (235)
.-+..|+++.+...
T Consensus 82 ~~g~iD~lInnAg~ 95 (334)
T PRK07109 82 ELGPIDTWVNNAMV 95 (334)
T ss_pred HCCCCCEEEECCCc
Confidence 01468999876544
No 378
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=89.51 E-value=10 Score=31.17 Aligned_cols=102 Identities=13% Similarity=0.069 Sum_probs=59.1
Q ss_pred cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe--ccccc-C-CCCCC
Q 026688 57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR--ADISR-L-PFASS 131 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~--~d~~~-~-~~~~~ 131 (235)
....++.+||-.|+|. |..+..+++..-..+|+++|.++.-++.+++. .. ..-+.... .+..+ . ....+
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~-Ga-----~~~i~~~~~~~~~~~~v~~~~~~ 254 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL-GA-----TDCVNPNDYDKPIQEVIVEITDG 254 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC-----CeEEcccccchhHHHHHHHHhCC
Confidence 3455688999999875 66666677664222799999999888887552 11 00011110 01100 0 01113
Q ss_pred ceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEe
Q 026688 132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 170 (235)
Q Consensus 132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~ 170 (235)
.+|+++-. ... ...+....+.++++ |.+++...
T Consensus 255 g~d~vid~-----~G~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 255 GVDYSFEC-----IGN-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCCEEEEC-----CCC-HHHHHHHHHHhhcCCCeEEEEec
Confidence 57888732 222 24577788899886 98887654
No 379
>PLN02494 adenosylhomocysteinase
Probab=89.49 E-value=3.3 Score=35.21 Aligned_cols=104 Identities=9% Similarity=0.014 Sum_probs=62.8
Q ss_pred CHHHHHHHHhhcCC-CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688 46 PEKEFELMKGYLKP-VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 123 (235)
Q Consensus 46 ~~~~~~~i~~~~~~-~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 123 (235)
.+..++.+....+. ..+++|+-+|+|. |......++.. .++|+++|.++.-...+... ...+ .++
T Consensus 237 gqS~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~~----------G~~v--v~l 303 (477)
T PLN02494 237 RHSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQALME----------GYQV--LTL 303 (477)
T ss_pred cccHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHhc----------CCee--ccH
Confidence 35556666666554 4579999999997 65555555433 45899999988644343321 1111 122
Q ss_pred ccCCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 124 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 124 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
.+. -...|+|+....-. ..+.....+.+++||.|+-...
T Consensus 304 eEa---l~~ADVVI~tTGt~-----~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 304 EDV---VSEADIFVTTTGNK-----DIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred HHH---HhhCCEEEECCCCc-----cchHHHHHhcCCCCCEEEEcCC
Confidence 221 13569888632222 2234678889999999887654
No 380
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.37 E-value=1.6 Score=36.06 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=47.4
Q ss_pred CeEEEecCCC-chHHHHH-HHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-C--CCCceeEEE
Q 026688 63 GNIIDASCGS-GLFSRIF-AKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F--ASSSIDAVH 137 (235)
Q Consensus 63 ~~vLdiG~G~-G~~~~~l-~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~--~~~~~D~i~ 137 (235)
.+||-+|||. |...... ++++ +.+|+..|.+.+..+.+.... ..+++....|+.+.+ . --..+|+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~-d~~V~iAdRs~~~~~~i~~~~-------~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNG-DGEVTIADRSKEKCARIAELI-------GGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHhhc-------cccceeEEecccChHHHHHHHhcCCEEE
Confidence 5799999975 5444443 4444 369999999988887776543 236888888987753 0 114569988
Q ss_pred ec
Q 026688 138 AG 139 (235)
Q Consensus 138 ~~ 139 (235)
..
T Consensus 74 n~ 75 (389)
T COG1748 74 NA 75 (389)
T ss_pred Ee
Confidence 64
No 381
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.19 E-value=8.5 Score=31.26 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=58.1
Q ss_pred cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec---cccc-CC--CC
Q 026688 57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---DISR-LP--FA 129 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~~~-~~--~~ 129 (235)
....++.+||-.|+|. |..+..+++.. ...++++|.+++-++.+++. ... .-+..... ++.+ .. ..
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~-Ga~-----~~i~~~~~~~~~~~~~~~~~t~ 234 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGF-GAD-----LTLNPKDKSAREVKKLIKAFAK 234 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh-CCc-----eEecCccccHHHHHHHHHhhcc
Confidence 3445678999999976 66766676664 34899999999888877542 110 00111111 1100 00 01
Q ss_pred CCcee----EEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 130 SSSID----AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 130 ~~~~D----~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
...+| +|+ ..... ...+..+.++|++||.+++...
T Consensus 235 ~~g~d~~~d~v~-----d~~g~-~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 235 ARGLRSTGWKIF-----ECSGS-KPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred cCCCCCCcCEEE-----ECCCC-hHHHHHHHHHHhcCCeEEEECc
Confidence 12344 444 22222 2456778889999999987654
No 382
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.16 E-value=8.2 Score=30.88 Aligned_cols=100 Identities=17% Similarity=0.128 Sum_probs=56.0
Q ss_pred CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHH--hhhcCCCCCCCeeEEecccccCCCCCCceeEEEe
Q 026688 63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQESNFPKENFLLVRADISRLPFASSSIDAVHA 138 (235)
Q Consensus 63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 138 (235)
.+|+-+|+|. | .++..|.+.+. .|+.++.+++.++..++. +..... .....+ ..... .+.+.+.+|+|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~--g~~~~~-~~~~~-~~~~~~~~D~viv 76 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQ--GQASLY-AIPAE-TADAAEPIHRLLL 76 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeC--Ccceee-ccCCC-CcccccccCEEEE
Confidence 5799999996 4 56667777665 899999877655555432 111000 001111 11111 1112357898885
Q ss_pred cccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688 139 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 139 ~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
.-=-+ +....++.+...+.++..++.....
T Consensus 77 ~vK~~---~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 77 ACKAY---DAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred ECCHH---hHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 32112 2346788888899998876655443
No 383
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=89.10 E-value=8.8 Score=29.80 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=58.0
Q ss_pred cCCCCCCeEEEecCCC-chHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCcee
Q 026688 57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 134 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 134 (235)
....++.+||-.|+|. |..+..+++.. ... +++++.+++..+.+++.- . ...+ . ...........+|
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g-~-----~~~~--~--~~~~~~~~~~~~d 161 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALG-P-----ADPV--A--ADTADEIGGRGAD 161 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcC-C-----Cccc--c--ccchhhhcCCCCC
Confidence 4455678899998865 66666666654 235 999999888877666531 0 0011 0 0000011234688
Q ss_pred EEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
+++....- ...+....+.++++|.++....
T Consensus 162 ~vl~~~~~------~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 162 VVIEASGS------PSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred EEEEccCC------hHHHHHHHHHhcCCcEEEEEec
Confidence 88843211 2356788889999999886543
No 384
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=89.08 E-value=4.5 Score=26.22 Aligned_cols=75 Identities=13% Similarity=0.050 Sum_probs=46.4
Q ss_pred cccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCC-----ceeecCHHHHHHHHHHc
Q 026688 139 GAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISG-----SYTFLSEREIEDLCRAC 211 (235)
Q Consensus 139 ~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~ 211 (235)
..++-|.+.. .+.+.++....+ |.++++.-. ..++..-++..-..++. .......+++.+.++++
T Consensus 2 mDvLIHYp~~d~~~~l~~La~~t~--~~~ifTfAP------~T~~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~ 73 (97)
T PF07109_consen 2 MDVLIHYPAEDAAQMLAHLASRTR--GSLIFTFAP------RTPLLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAA 73 (97)
T ss_pred cceEeccCHHHHHHHHHHHHHhcc--CcEEEEECC------CCHHHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhC
Confidence 3455666654 477777777655 677776543 23344333332222222 24567889999999999
Q ss_pred CCceeEEEee
Q 026688 212 GLVDFKCTRN 221 (235)
Q Consensus 212 Gf~~~~~~~~ 221 (235)
||++.+....
T Consensus 74 g~~~~r~~ri 83 (97)
T PF07109_consen 74 GWRIGRTERI 83 (97)
T ss_pred CCeeeecccc
Confidence 9998776643
No 385
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.03 E-value=10 Score=30.32 Aligned_cols=99 Identities=15% Similarity=0.112 Sum_probs=59.2
Q ss_pred hcCCCCCCeEEEecCCC-chHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC----CCC
Q 026688 56 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFA 129 (235)
Q Consensus 56 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~ 129 (235)
.....++.+||..|+|. |..+..+++... .+ +++++.+++..+.+++. . . . .++..+-... ...
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~~-g------~-~-~~~~~~~~~~~~~~~~~ 223 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEPNEEKLELAKKL-G------A-T-ETVDPSREDPEAQKEDN 223 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHh-C------C-e-EEecCCCCCHHHHHHhc
Confidence 34445678999998753 666666666642 34 88899888877776442 1 1 1 1111111110 112
Q ss_pred CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
.+.+|+++.... ....+..+.+.|+++|.++....
T Consensus 224 ~~~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 224 PYGFDVVIEATG------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CCCCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence 356899985321 12467788899999999887543
No 386
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=89.01 E-value=1.1 Score=35.20 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=35.3
Q ss_pred CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh
Q 026688 59 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 107 (235)
Q Consensus 59 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 107 (235)
...+.+|.-+|+|.-..+..+.+.- ++|.++|+++..+...+-+++.
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~P--a~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRAP--ARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcCC--ceeEEEeCCHHHHHHHHHHHHH
Confidence 3447899999999776777776653 4999999999888776655543
No 387
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.01 E-value=0.77 Score=36.33 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=54.6
Q ss_pred CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc--------CCCC-------CCCeeEEeccccc
Q 026688 63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------SNFP-------KENFLLVRADISR 125 (235)
Q Consensus 63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--------~~~~-------~~~~~~~~~d~~~ 125 (235)
.+|.-+|+|. | .++..+++.+. .|+.+|.+++.++.+++.+... .... ..++. ...|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHH
Confidence 4788899986 3 34445555555 8999999999888887653211 0000 01222 2233322
Q ss_pred CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEE
Q 026688 126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG 167 (235)
Q Consensus 126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~ 167 (235)
. ....|+|+..-. +...-...+++++...++++..|..
T Consensus 81 a---~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 81 A---VKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred H---hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 1 245688884321 1111124667888888877765533
No 388
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=88.93 E-value=8.1 Score=31.12 Aligned_cols=99 Identities=18% Similarity=0.203 Sum_probs=56.2
Q ss_pred CCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C--CCCCCcee
Q 026688 59 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L--PFASSSID 134 (235)
Q Consensus 59 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~--~~~~~~~D 134 (235)
..++.+||..|+|. |..+..+++......+++++.++...+.+++.- . ..-+.....+..+ + ....+.+|
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g-~-----~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG-A-----TDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC-C-----cEEEcCCcchHHHHHHHHcCCCCCc
Confidence 34577888877653 666666766643236888888877666655421 0 0001111111111 0 01235689
Q ss_pred EEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
+++....- ...+....+.|+++|.++...
T Consensus 239 ~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 239 CVIEAVGF------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred EEEEccCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 88853221 246788889999999988653
No 389
>PRK12939 short chain dehydrogenase; Provisional
Probab=88.89 E-value=5.6 Score=30.25 Aligned_cols=74 Identities=15% Similarity=0.149 Sum_probs=45.5
Q ss_pred CCeEEEecCCCchHHHH----HHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC---
Q 026688 62 GGNIIDASCGSGLFSRI----FAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA--- 129 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~----l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--- 129 (235)
++++|-.|++ |..+.. +++++. ++++++.++..+....+.+... ..++.+...|+.+.. +.
T Consensus 7 ~~~vlItGa~-g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (250)
T PRK12939 7 GKRALVTGAA-RGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAA----GGRAHAIAADLADPASVQRFFDAAA 79 (250)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 5678877764 334433 444554 8888998887666655554432 236788888987532 10
Q ss_pred --CCceeEEEecccc
Q 026688 130 --SSSIDAVHAGAAI 142 (235)
Q Consensus 130 --~~~~D~i~~~~~l 142 (235)
-+..|+++.+...
T Consensus 80 ~~~~~id~vi~~ag~ 94 (250)
T PRK12939 80 AALGGLDGLVNNAGI 94 (250)
T ss_pred HHcCCCCEEEECCCC
Confidence 1468998876543
No 390
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=88.62 E-value=3.1 Score=24.97 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeCcEEEE
Q 026688 148 PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMF 227 (235)
Q Consensus 148 ~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 227 (235)
|--.+++..+-+++|..|.+..-.. -+..++..++++.|++++.....+..+.+
T Consensus 13 Pll~~~~~l~~l~~G~~l~v~~d~~--------------------------~~~~di~~~~~~~g~~~~~~~~~~~~~~i 66 (70)
T PF01206_consen 13 PLLKAKKALKELPPGEVLEVLVDDP--------------------------AAVEDIPRWCEENGYEVVEVEEEGGEYRI 66 (70)
T ss_dssp HHHHHHHHHHTSGTT-EEEEEESST--------------------------THHHHHHHHHHHHTEEEEEEEESSSSEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCc--------------------------cHHHHHHHHHHHCCCEEEEEEEeCCEEEE
Confidence 3344667777778887776655432 24578999999999998888766665555
Q ss_pred EEec
Q 026688 228 TATK 231 (235)
Q Consensus 228 ~~~k 231 (235)
..+|
T Consensus 67 ~I~K 70 (70)
T PF01206_consen 67 LIRK 70 (70)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 5544
No 391
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.56 E-value=4 Score=32.14 Aligned_cols=84 Identities=17% Similarity=0.090 Sum_probs=49.7
Q ss_pred eEEEecCCC--chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688 64 NIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 141 (235)
Q Consensus 64 ~vLdiG~G~--G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~ 141 (235)
+|.-||+|. |.++..+.+.+. +|+++|.++..++.+.+. + .+.....+.. .....|+|+..-.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~----g-----~~~~~~~~~~----~~~~aDlVilavp 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIER----G-----LVDEASTDLS----LLKDCDLVILALP 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHC----C-----CcccccCCHh----HhcCCCEEEEcCC
Confidence 577788885 456666666654 899999999887776542 1 1111111111 1245788886433
Q ss_pred ccccCChHHHHHHHHHhccCCcEE
Q 026688 142 IHCWSSPSTGVAEISRVLRPGGVF 165 (235)
Q Consensus 142 l~~~~~~~~~l~~~~~~L~pgG~l 165 (235)
... ..++++++...++|+..+
T Consensus 67 ~~~---~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 IGL---LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred HHH---HHHHHHHHHHhCCCCcEE
Confidence 221 135677777777776433
No 392
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.50 E-value=11 Score=30.08 Aligned_cols=153 Identities=12% Similarity=0.094 Sum_probs=77.0
Q ss_pred CCCeEEEecCCCchHHHHHHHcC--CCceEEEEeCCHHHHHHHHHHhhhcCC-------C------------CCCCeeEE
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESN-------F------------PKENFLLV 119 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~-------~------------~~~~~~~~ 119 (235)
....|+.+|||.-.+...+...+ ....++=+|..+.....+.. ....++ . ..++....
T Consensus 87 ~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~i-k~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~ 165 (335)
T KOG2918|consen 87 GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISI-KRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLI 165 (335)
T ss_pred CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhh-cccCchhhhhhccccccccccCcceeccCceeee
Confidence 36789999999998888888876 44566667766654444411 111000 0 00112222
Q ss_pred ecccccCC----------CCCCceeEEEecccccccCCh--HHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHH
Q 026688 120 RADISRLP----------FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ 187 (235)
Q Consensus 120 ~~d~~~~~----------~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~ 187 (235)
-+|+.++. ...+-.-++++=.++-++... ...++.+.+.... +.++.-+... ...+|.+-..+
T Consensus 166 g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~-a~fv~YEQi~----~~D~Fg~vM~~ 240 (335)
T KOG2918|consen 166 GCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN-AHFVNYEQIN----PNDRFGKVMLA 240 (335)
T ss_pred ccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc-ccEEEEeccC----CCChHHHHHHH
Confidence 23332210 000111122222233333322 2455666555544 4444444433 22333333333
Q ss_pred hHh----hcCCceeecCHHHHHHHHHHcCCceeEEE
Q 026688 188 NMM----QISGSYTFLSEREIEDLCRACGLVDFKCT 219 (235)
Q Consensus 188 ~~~----~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 219 (235)
.+. ...+-..+-|.+..+..+.++||+.+...
T Consensus 241 nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~ 276 (335)
T KOG2918|consen 241 NLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAV 276 (335)
T ss_pred HHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehh
Confidence 322 23344667889999999999999876654
No 393
>PRK08324 short chain dehydrogenase; Validated
Probab=88.37 E-value=8.5 Score=34.65 Aligned_cols=103 Identities=20% Similarity=0.214 Sum_probs=60.0
Q ss_pred CCCeEEEecCCCc--h-HHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC---
Q 026688 61 LGGNIIDASCGSG--L-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA--- 129 (235)
Q Consensus 61 ~~~~vLdiG~G~G--~-~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--- 129 (235)
.++++|-.|++.| . ++..+++.+. .|+.+|.++..++.+.+.+.. ..++.++..|+.+.. +.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~-----~~~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGG-----PDRALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhc-----cCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3578888886433 2 2334444554 899999998777666554432 125777888876531 10
Q ss_pred --CCceeEEEecccccccCC-------------------hHHHHHHHHHhccC---CcEEEEEEe
Q 026688 130 --SSSIDAVHAGAAIHCWSS-------------------PSTGVAEISRVLRP---GGVFVGTTY 170 (235)
Q Consensus 130 --~~~~D~i~~~~~l~~~~~-------------------~~~~l~~~~~~L~p---gG~li~~~~ 170 (235)
.+.+|+|+.+........ ...+++.+.+.+++ +|.+++...
T Consensus 494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 136899997765322110 12345566666665 577776544
No 394
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=88.27 E-value=5.7 Score=32.03 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=60.0
Q ss_pred cCCCCCCeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec-cccc-C-CCCCC
Q 026688 57 LKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISR-L-PFASS 131 (235)
Q Consensus 57 ~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~ 131 (235)
....++.+||-.|+ |.|..+..+++.. .+++++++.+++-.+.+++.+... .-+..... +..+ . .....
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa~-----~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGFD-----DAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCc-----eeEEcCCcccHHHHHHHhCCC
Confidence 44566889999886 3477777777764 358999998887777776533210 00111111 1111 0 11124
Q ss_pred ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
.+|+|+-. .. ...+..+.++|+++|.++...
T Consensus 221 gvd~v~d~-----~g--~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 221 GIDIYFDN-----VG--GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CcEEEEEC-----CC--HHHHHHHHHHhccCcEEEEec
Confidence 68888842 21 145778899999999998654
No 395
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=88.25 E-value=11 Score=29.88 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=56.2
Q ss_pred cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeE
Q 026688 57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA 135 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 135 (235)
....++.+||-.|+|. |..+..+++.. ..++++++.+++..+.+++ +.. ... .+.... .....+|+
T Consensus 151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~-~g~-------~~~---~~~~~~-~~~~~~d~ 217 (319)
T cd08242 151 VPITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARR-LGV-------ETV---LPDEAE-SEGGGFDV 217 (319)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH-cCC-------cEE---eCcccc-ccCCCCCE
Confidence 3445678899887653 44444455443 3479999998888877765 211 110 111111 22356898
Q ss_pred EEecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688 136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 168 (235)
Q Consensus 136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~ 168 (235)
++.... ....+..+.+.|+++|.++..
T Consensus 218 vid~~g------~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 218 VVEATG------SPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred EEECCC------ChHHHHHHHHHhhcCCEEEEE
Confidence 885321 123577888899999999873
No 396
>PRK06181 short chain dehydrogenase; Provisional
Probab=88.21 E-value=8.1 Score=29.77 Aligned_cols=73 Identities=21% Similarity=0.207 Sum_probs=44.0
Q ss_pred CeEEEecCCCchHHH----HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688 63 GNIIDASCGSGLFSR----IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----- 128 (235)
Q Consensus 63 ~~vLdiG~G~G~~~~----~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----- 128 (235)
+++|-.|+.. .++. .+++.+. +|++++.++...+...+.+... ..++.+...|+.+.. +
T Consensus 2 ~~vlVtGasg-~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (263)
T PRK06181 2 KVVIITGASE-GIGRALAVRLARAGA--QLVLAARNETRLASLAQELADH----GGEALVVPTDVSDAEACERLIEAAVA 74 (263)
T ss_pred CEEEEecCCc-HHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4677666543 3333 3444444 8999999887666555554432 236778888886632 0
Q ss_pred CCCceeEEEecccc
Q 026688 129 ASSSIDAVHAGAAI 142 (235)
Q Consensus 129 ~~~~~D~i~~~~~l 142 (235)
..+..|.|+.+...
T Consensus 75 ~~~~id~vi~~ag~ 88 (263)
T PRK06181 75 RFGGIDILVNNAGI 88 (263)
T ss_pred HcCCCCEEEECCCc
Confidence 01357999876543
No 397
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=88.09 E-value=12 Score=30.66 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=58.7
Q ss_pred cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec--cccc-C-CCCCC
Q 026688 57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA--DISR-L-PFASS 131 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~~ 131 (235)
....++.+||-.|+|. |..+..+++......|+++|.+++-++.+++. .. ..-+..... ++.+ + ....+
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~-Ga-----~~~i~~~~~~~~~~~~v~~~~~~ 256 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF-GV-----TEFVNPKDHDKPVQEVIAEMTGG 256 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC-----ceEEcccccchhHHHHHHHHhCC
Confidence 4455688999998864 66666666664323799999999888877542 11 000111100 0100 0 01123
Q ss_pred ceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEec
Q 026688 132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTYI 171 (235)
Q Consensus 132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~~ 171 (235)
.+|+++-. ... ...+....+.+++| |.+++....
T Consensus 257 ~~d~vid~-----~G~-~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 257 GVDYSFEC-----TGN-IDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred CCCEEEEC-----CCC-hHHHHHHHHHhhcCCCEEEEECcC
Confidence 57888732 211 24567778889996 888876543
No 398
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=88.07 E-value=11 Score=30.90 Aligned_cols=102 Identities=20% Similarity=0.206 Sum_probs=58.0
Q ss_pred cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc--ccc-C-CCCCC
Q 026688 57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD--ISR-L-PFASS 131 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d--~~~-~-~~~~~ 131 (235)
....++.+||-.|+|. |..+..+++......|+++|.++.-++.+++. ... .-+.....+ +.+ . .....
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-ga~-----~~i~~~~~~~~~~~~~~~~~~~ 253 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-GAT-----DFINPKDSDKPVSEVIREMTGG 253 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCC-----cEeccccccchHHHHHHHHhCC
Confidence 3445678999998864 56666666664322699999998887777542 110 001111100 000 0 01124
Q ss_pred ceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEe
Q 026688 132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 170 (235)
Q Consensus 132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~ 170 (235)
.+|+|+-.. .. ...+....+.++++ |.++....
T Consensus 254 g~d~vid~~-----g~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 254 GVDYSFECT-----GN-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCEEEECC-----CC-hHHHHHHHHhcccCCCEEEEEcC
Confidence 688888322 11 24577788889885 88887654
No 399
>PRK07576 short chain dehydrogenase; Provisional
Probab=88.03 E-value=9.9 Score=29.45 Aligned_cols=73 Identities=29% Similarity=0.378 Sum_probs=43.7
Q ss_pred CCeEEEecCCCc--h-HHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688 62 GGNIIDASCGSG--L-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----- 128 (235)
Q Consensus 62 ~~~vLdiG~G~G--~-~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----- 128 (235)
++++|-.|++.| . +...+++.+. .|++++.+++.++...+.+... ..++.++..|+.+.. +
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQA----GPEGLGVSADVRDYAAVEAAFAQIAD 82 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh----CCceEEEECCCCCHHHHHHHHHHHHH
Confidence 568888876432 2 3334454544 8999999887666554444432 224567788886521 0
Q ss_pred CCCceeEEEecc
Q 026688 129 ASSSIDAVHAGA 140 (235)
Q Consensus 129 ~~~~~D~i~~~~ 140 (235)
..+..|+++.+.
T Consensus 83 ~~~~iD~vi~~a 94 (264)
T PRK07576 83 EFGPIDVLVSGA 94 (264)
T ss_pred HcCCCCEEEECC
Confidence 013579998764
No 400
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=88.03 E-value=5.1 Score=33.67 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=27.9
Q ss_pred CeEEEecCCCc--hHHHHHHHcCCCceEEEEeCCHHHHHHH
Q 026688 63 GNIIDASCGSG--LFSRIFAKSGLFSLVVALDYSENMLKQC 101 (235)
Q Consensus 63 ~~vLdiG~G~G--~~~~~l~~~~~~~~v~~~D~s~~~~~~a 101 (235)
.+|.-+|.|.- .++..+++.+. +|+++|.++..++..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~--~V~~~D~~~~~v~~l 42 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK--QVIGVDINQHAVDTI 42 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC--EEEEEeCCHHHHHHH
Confidence 57888899863 44455667766 899999999887764
No 401
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=88.03 E-value=13 Score=30.37 Aligned_cols=98 Identities=18% Similarity=0.259 Sum_probs=57.9
Q ss_pred CCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec---cccc-C-CCCCC
Q 026688 58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---DISR-L-PFASS 131 (235)
Q Consensus 58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~~~-~-~~~~~ 131 (235)
...++.+||-.|+|. |..+..+++......++++|.++.-.+.+++. . . ..++.. ++.+ + .....
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~-g------~--~~~i~~~~~~~~~~v~~~~~~ 253 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL-G------A--THVINPKEEDLVAAIREITGG 253 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-C------C--cEEecCCCcCHHHHHHHHhCC
Confidence 345578899888765 66666666664322699999998777766542 1 1 111111 1100 0 01134
Q ss_pred ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
.+|+|+-... . ...+..+.+.++++|.++....
T Consensus 254 ~~d~vld~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 254 GVDYALDTTG-----V-PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred CCcEEEECCC-----C-cHHHHHHHHHhccCCEEEEeCc
Confidence 6888884321 1 2357788999999999887543
No 402
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=87.94 E-value=8.1 Score=27.78 Aligned_cols=95 Identities=18% Similarity=0.089 Sum_probs=57.5
Q ss_pred CCCeEEEecCCCchHHHHHHH-cCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-CCC---CCceeE
Q 026688 61 LGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFA---SSSIDA 135 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~---~~~~D~ 135 (235)
...+|+-|||=+-.. .+.+ ..+..++...|++...-. . ..+ .|..-|..+. .++ .++||+
T Consensus 25 ~~~~iaclstPsl~~--~l~~~~~~~~~~~Lle~D~RF~~--------~----~~~-~F~fyD~~~p~~~~~~l~~~~d~ 89 (162)
T PF10237_consen 25 DDTRIACLSTPSLYE--ALKKESKPRIQSFLLEYDRRFEQ--------F----GGD-EFVFYDYNEPEELPEELKGKFDV 89 (162)
T ss_pred CCCEEEEEeCcHHHH--HHHhhcCCCccEEEEeecchHHh--------c----CCc-ceEECCCCChhhhhhhcCCCceE
Confidence 368999999976433 3333 345568999999874322 1 122 4566666542 111 478999
Q ss_pred EEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
|++.--+-.-.-..+....+.-++++++.+++.+.
T Consensus 90 vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 90 VVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 99765552111113555666777788888887654
No 403
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=87.92 E-value=9.8 Score=31.57 Aligned_cols=99 Identities=15% Similarity=0.190 Sum_probs=55.9
Q ss_pred CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc--------------
Q 026688 62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-------------- 125 (235)
Q Consensus 62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-------------- 125 (235)
..+|--+|-|. | -++..+++++. .|+|+|+++..++...+- ...+...+...
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G----------~~~i~e~~~~~~v~~~v~~g~lraT 76 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRG----------ESYIEEPDLDEVVKEAVESGKLRAT 76 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCC----------cceeecCcHHHHHHHHHhcCCceEe
Confidence 36788888886 4 34445666655 999999999887765531 11111111111
Q ss_pred -CCCCCCceeEEEec--cccc--ccCCh---HHHHHHHHHhccCCcEEEEEEecc
Q 026688 126 -LPFASSSIDAVHAG--AAIH--CWSSP---STGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 126 -~~~~~~~~D~i~~~--~~l~--~~~~~---~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
.+..-...|+++.. .-+. +-+|. ....+.+.+.|++|-.+++.....
T Consensus 77 td~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~ 131 (436)
T COG0677 77 TDPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTP 131 (436)
T ss_pred cChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 00001245665532 2222 22232 477889999999977776655543
No 404
>PRK08267 short chain dehydrogenase; Provisional
Probab=87.86 E-value=9.5 Score=29.35 Aligned_cols=72 Identities=25% Similarity=0.249 Sum_probs=45.7
Q ss_pred CeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------C-C-
Q 026688 63 GNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------F-A- 129 (235)
Q Consensus 63 ~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~-~- 129 (235)
+++|-.|++.| .++..+++++. +|..++.++..++.....+. ..++.++.+|+.+.. . .
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~~~~~~ 73 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELG------AGNAWTGALDVTDRAAWDAALADFAAA 73 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 46777777543 23344555554 89999998877666554432 236778888987632 1 0
Q ss_pred -CCceeEEEecccc
Q 026688 130 -SSSIDAVHAGAAI 142 (235)
Q Consensus 130 -~~~~D~i~~~~~l 142 (235)
.+++|+++.+...
T Consensus 74 ~~~~id~vi~~ag~ 87 (260)
T PRK08267 74 TGGRLDVLFNNAGI 87 (260)
T ss_pred cCCCCCEEEECCCC
Confidence 3467999976554
No 405
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=87.77 E-value=16 Score=30.87 Aligned_cols=41 Identities=7% Similarity=0.071 Sum_probs=27.0
Q ss_pred CCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHH
Q 026688 59 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLK 99 (235)
Q Consensus 59 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~ 99 (235)
..++.+|+-+|+|. |......+.......++.++.++.-..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~ 220 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAE 220 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHH
Confidence 34578999999986 555444443322247899999876544
No 406
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=87.75 E-value=14 Score=30.85 Aligned_cols=104 Identities=24% Similarity=0.275 Sum_probs=58.1
Q ss_pred CCCCCeEEEec-CC-CchHHHHHHHcC-C-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec----cccc-C-C-
Q 026688 59 PVLGGNIIDAS-CG-SGLFSRIFAKSG-L-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA----DISR-L-P- 127 (235)
Q Consensus 59 ~~~~~~vLdiG-~G-~G~~~~~l~~~~-~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~----d~~~-~-~- 127 (235)
..++.+||-+| +| .|..+..+++.. . ..+|+++|.++.-++.+++..............++.. +..+ . .
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHH
Confidence 44567899887 45 477777777753 1 1379999999999888877432100000001111111 1111 0 0
Q ss_pred CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688 128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 168 (235)
Q Consensus 128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~ 168 (235)
.....+|+++.... . ...+....++++++|.+++.
T Consensus 253 t~g~g~D~vid~~g-----~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 253 TGGQGFDDVFVFVP-----V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred hCCCCCCEEEEcCC-----C-HHHHHHHHHHhccCCeEEEE
Confidence 12246888884221 1 24577888999988876654
No 407
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=87.74 E-value=6.2 Score=30.00 Aligned_cols=66 Identities=14% Similarity=0.258 Sum_probs=41.8
Q ss_pred CCeEEEecCCCchH--HHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688 62 GGNIIDASCGSGLF--SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 139 (235)
Q Consensus 62 ~~~vLdiG~G~G~~--~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~ 139 (235)
+.+||-+|+|.-.. ...|++.+....|++-++++++.+.+. ..++++...++....+ ..+++|++.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~----------~~~i~~~~r~~~~~dl--~g~~LViaA 92 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKK----------YGNLKLIKGNYDKEFI--KDKHLIVIA 92 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHh----------CCCEEEEeCCCChHHh--CCCcEEEEC
Confidence 67999999998544 335666666555555577777655433 3367777776654332 346777753
No 408
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.74 E-value=3.6 Score=33.02 Aligned_cols=105 Identities=12% Similarity=0.049 Sum_probs=60.6
Q ss_pred CCCCCCeEEEecCC-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEE
Q 026688 58 KPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 136 (235)
Q Consensus 58 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 136 (235)
...|++.|--+|.| -|.++..+++.. ..+|+++|-+..--+.+-+.+... ..-....|-....-..+..|.+
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd------~fv~~~~d~d~~~~~~~~~dg~ 250 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGAD------VFVDSTEDPDIMKAIMKTTDGG 250 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcc------eeEEecCCHHHHHHHHHhhcCc
Confidence 34467787777764 699999888874 359999999886666666654321 1111110111111011334444
Q ss_pred EecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688 137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 137 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
+-.-+ . + ....+..+.++||++|.+++......
T Consensus 251 ~~~v~-~-~--a~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 251 IDTVS-N-L--AEHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred ceeee-e-c--cccchHHHHHHhhcCCEEEEEeCcCC
Confidence 41111 0 0 12346778999999999998876553
No 409
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=87.65 E-value=4.7 Score=33.30 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=53.2
Q ss_pred CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHH-HHHHHHHhhhcCCCCCCCeeEEe-cccccCCCCCCceeEE
Q 026688 60 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENM-LKQCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAV 136 (235)
Q Consensus 60 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~-~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~i 136 (235)
.++.+||-.|+|. |..+..+++.. .+++++++.+++. .+.+++ + + . . .++. .+........+.+|++
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~-l---G---a-~-~~i~~~~~~~v~~~~~~~D~v 246 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDR-L---G---A-D-SFLVTTDSQKMKEAVGTMDFI 246 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHh-C---C---C-c-EEEcCcCHHHHHHhhCCCcEE
Confidence 3578899888865 66666666654 3578899887543 334432 1 1 1 1 1111 1101110001247888
Q ss_pred EecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 137 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
+-.. .. ...+..+.+.++++|.++....
T Consensus 247 id~~-----G~-~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 247 IDTV-----SA-EHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred EECC-----Cc-HHHHHHHHHhhcCCCEEEEEcc
Confidence 7321 11 2357788899999999987653
No 410
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=87.57 E-value=1.5 Score=34.66 Aligned_cols=67 Identities=16% Similarity=0.314 Sum_probs=43.2
Q ss_pred CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHH
Q 026688 130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 209 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 209 (235)
.+.||+|+.....-|+-.|. +.++++|+|.|++.+... ..++...-... -.+.+.++++
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKf-----mvdLrKEq~~~-----------F~~kv~eLA~ 278 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKF-----MVDLRKEQLQE-----------FVKKVKELAK 278 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchh-----heeCCHHHHHH-----------HHHHHHHHHH
Confidence 36799999877666655554 777899999999876421 11211111111 1356889999
Q ss_pred HcCCceeE
Q 026688 210 ACGLVDFK 217 (235)
Q Consensus 210 ~~Gf~~~~ 217 (235)
.+||+.+.
T Consensus 279 ~aG~~p~~ 286 (289)
T PF14740_consen 279 AAGFKPVT 286 (289)
T ss_pred HCCCcccc
Confidence 99998643
No 411
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=87.51 E-value=11 Score=31.61 Aligned_cols=103 Identities=10% Similarity=0.055 Sum_probs=60.7
Q ss_pred CHHHHHHHHhhcC-CCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc
Q 026688 46 PEKEFELMKGYLK-PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 123 (235)
Q Consensus 46 ~~~~~~~i~~~~~-~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 123 (235)
.+...+.+....+ ...+++|+-+|+|. |......++.. .++|+++|.++.-...+.. . ...+ .++
T Consensus 178 g~s~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~----~------G~~v--~~l 244 (406)
T TIGR00936 178 GQSTIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAM----D------GFRV--MTM 244 (406)
T ss_pred chhHHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHh----c------CCEe--CCH
Confidence 4455565655543 24588999999997 65555555543 4689999998854333332 1 1122 122
Q ss_pred ccCCCCCCceeEEEecccccccCChHHHHH-HHHHhccCCcEEEEEEe
Q 026688 124 SRLPFASSSIDAVHAGAAIHCWSSPSTGVA-EISRVLRPGGVFVGTTY 170 (235)
Q Consensus 124 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~-~~~~~L~pgG~li~~~~ 170 (235)
.+. -...|+++... .....+. +....+++|+.++....
T Consensus 245 eea---l~~aDVVItaT------G~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 245 EEA---AKIGDIFITAT------GNKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred HHH---HhcCCEEEECC------CCHHHHHHHHHhcCCCCcEEEEECC
Confidence 221 13468887632 1233444 48888999998876544
No 412
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=87.51 E-value=14 Score=30.20 Aligned_cols=101 Identities=14% Similarity=0.095 Sum_probs=58.8
Q ss_pred cCCCCCCeEEEecCCC-chHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec--cccc-C-CCCC
Q 026688 57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA--DISR-L-PFAS 130 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~ 130 (235)
....++.+||-.|+|. |..+..+++.. .+ .|+++|.++.-++.+++ +.. ..-+..... +..+ . ....
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~-lGa-----~~~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKK-FGA-----TDCVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH-cCC-----CEEEcccccchHHHHHHHHHhC
Confidence 3445688999998864 66666666654 34 69999999988877754 211 000111110 1111 0 0112
Q ss_pred CceeEEEecccccccCChHHHHHHHHHhccCC-cEEEEEEe
Q 026688 131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 170 (235)
Q Consensus 131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pg-G~li~~~~ 170 (235)
+.+|+|+-. ... ...+....+.++++ |.++....
T Consensus 255 ~g~d~vid~-----~g~-~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 255 GGVDYTFEC-----IGN-VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CCCcEEEEC-----CCC-hHHHHHHHHhhccCCCeEEEEcc
Confidence 368888842 211 24577788899887 88887654
No 413
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.28 E-value=14 Score=29.82 Aligned_cols=100 Identities=21% Similarity=0.221 Sum_probs=59.3
Q ss_pred hcCCCCCCeEEEecCCC-chHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEecc-------ccc
Q 026688 56 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRAD-------ISR 125 (235)
Q Consensus 56 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d-------~~~ 125 (235)
.....++.+||-.|+|. |..+..+++.. ..+ +++++.++...+.+++. . ... +.....+ +..
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~~-g------~~~vi~~~~~~~~~~~~~~~~ 228 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKEL-G------ATHTVNVRTEDTPESAEKIAE 228 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHc-C------CcEEeccccccchhHHHHHHH
Confidence 34455678888888765 66666777764 335 88888888777666442 1 111 1111111 111
Q ss_pred CCCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 126 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
. .....+|+|+-.... ...+....+.++++|.++....
T Consensus 229 ~-~~~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 229 L-LGGKGPDVVIECTGA------ESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred H-hCCCCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 223458999853221 2357888999999999886543
No 414
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=86.89 E-value=1.7 Score=33.70 Aligned_cols=57 Identities=11% Similarity=0.110 Sum_probs=39.2
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHh
Q 026688 47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV 105 (235)
Q Consensus 47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~ 105 (235)
.+++..|.+.++.....+++|+=||+|..+..+.+... .++.-|+++..+...+..+
T Consensus 6 ~~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~--~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 6 RKLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGK--RVIINDINPDLINFWKAVL 62 (260)
T ss_dssp GGGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SS--EEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCEEEEEecchhHHHHHhccccc--ceeeeechHHHHHHHHHHH
Confidence 35667888888754578999999999999988876443 8999999998777666433
No 415
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.85 E-value=11 Score=29.84 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=51.8
Q ss_pred eEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCC-CCCeeEEecccccCCCCCCceeEEEecc
Q 026688 64 NIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRLPFASSSIDAVHAGA 140 (235)
Q Consensus 64 ~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~D~i~~~~ 140 (235)
+|+-+|+|. | .++..|.+.+. +|+.++.+++.++..++. +... ...... .......+.....+|+|+..-
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~-~~~~~~~~~~~~~~d~vila~ 74 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH--DVTLVARRGAHLDALNEN----GLRLEDGEITV-PVLAADDPAELGPQDLVILAV 74 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC--eEEEEECChHHHHHHHHc----CCcccCCceee-cccCCCChhHcCCCCEEEEec
Confidence 588899986 3 34555666655 899999877666555432 1100 000100 000011011125789888643
Q ss_pred cccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 141 AIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
--. +...+++.+...+.++..++...
T Consensus 75 k~~---~~~~~~~~l~~~l~~~~~iv~~~ 100 (304)
T PRK06522 75 KAY---QLPAALPSLAPLLGPDTPVLFLQ 100 (304)
T ss_pred ccc---cHHHHHHHHhhhcCCCCEEEEec
Confidence 322 23567778888887776665543
No 416
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=86.71 E-value=2.9 Score=29.32 Aligned_cols=89 Identities=18% Similarity=0.178 Sum_probs=50.8
Q ss_pred EEEecCCC-chHHH-HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc--------c-ccC-CCCCCc
Q 026688 65 IIDASCGS-GLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD--------I-SRL-PFASSS 132 (235)
Q Consensus 65 vLdiG~G~-G~~~~-~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d--------~-~~~-~~~~~~ 132 (235)
|+-+|+|. |.+.. .|.+.+. .|+.++.++ .++..++.- +.+...+ . ... +.....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQG----------LTITGPDGDETVQPPIVISAPSADAGP 67 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHC----------EEEEETTEEEEEEEEEEESSHGHHHST
T ss_pred CEEECcCHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhhee----------EEEEecccceecccccccCcchhccCC
Confidence 56678886 54443 4445454 899999877 555543321 2221111 0 000 113468
Q ss_pred eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 133 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 133 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
+|+|+..-=-. +....++.+.+.+.|+..+++..
T Consensus 68 ~D~viv~vKa~---~~~~~l~~l~~~~~~~t~iv~~q 101 (151)
T PF02558_consen 68 YDLVIVAVKAY---QLEQALQSLKPYLDPNTTIVSLQ 101 (151)
T ss_dssp ESEEEE-SSGG---GHHHHHHHHCTGEETTEEEEEES
T ss_pred CcEEEEEeccc---chHHHHHHHhhccCCCcEEEEEe
Confidence 99999643222 23567889999999997666543
No 417
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=86.62 E-value=3.9 Score=29.81 Aligned_cols=89 Identities=19% Similarity=0.082 Sum_probs=49.0
Q ss_pred CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688 61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 139 (235)
Q Consensus 61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~ 139 (235)
.+++|.-+|+|. |......++.. ..+|+++|.+......... .. +...++.++- ...|+|++.
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~~~~~----------~~--~~~~~l~ell---~~aDiv~~~ 98 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRSPKPEEGADE----------FG--VEYVSLDELL---AQADIVSLH 98 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-T-EEEEEESSCHHHHHHHH----------TT--EEESSHHHHH---HH-SEEEE-
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-CceeEEecccCChhhhccc----------cc--ceeeehhhhc---chhhhhhhh
Confidence 478999999986 55555555543 4699999999865542211 11 2333544431 356888865
Q ss_pred ccccccCChHHHHHHHHHhccCCcEEE
Q 026688 140 AAIHCWSSPSTGVAEISRVLRPGGVFV 166 (235)
Q Consensus 140 ~~l~~~~~~~~~l~~~~~~L~pgG~li 166 (235)
..+.-- ...-+=++....+|+|..|+
T Consensus 99 ~plt~~-T~~li~~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 99 LPLTPE-TRGLINAEFLAKMKPGAVLV 124 (178)
T ss_dssp SSSSTT-TTTSBSHHHHHTSTTTEEEE
T ss_pred hccccc-cceeeeeeeeeccccceEEE
Confidence 443210 11122245677788876554
No 418
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=86.51 E-value=2.9 Score=31.54 Aligned_cols=74 Identities=7% Similarity=0.124 Sum_probs=49.8
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 47 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 47 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
.++.+.|..........-|.+||.|.|..+..+...+. .....++.++..+.-.+...... ..+..+...|+..
T Consensus 36 ~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~-~RL~vVE~D~RFip~LQ~L~EAa----~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 36 LRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADV-ARLLVVEKDTRFIPGLQMLSEAA----PGKLRIHHGDVLR 109 (326)
T ss_pred hHHHHHHHHhccccccceeEEecCCCCchhHHHHhcch-hheeeeeeccccChHHHHHhhcC----CcceEEeccccce
Confidence 34455666666655578899999999999999988763 47788888876655544333322 3356666666643
No 419
>PLN00203 glutamyl-tRNA reductase
Probab=86.42 E-value=15 Score=31.94 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=49.9
Q ss_pred HHHHHHhhcCC--CCCCeEEEecCCC-chHHH-HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccc
Q 026688 49 EFELMKGYLKP--VLGGNIIDASCGS-GLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 124 (235)
Q Consensus 49 ~~~~i~~~~~~--~~~~~vLdiG~G~-G~~~~-~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 124 (235)
..+.....+.. ..+.+|+-||+|. |.... .+...+ ...++.++.+++-.+.....+. ...+.+ .++.
T Consensus 251 Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G-~~~V~V~nRs~era~~La~~~~------g~~i~~--~~~~ 321 (519)
T PLN00203 251 AVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKG-CTKMVVVNRSEERVAALREEFP------DVEIIY--KPLD 321 (519)
T ss_pred HHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhC------CCceEe--ecHh
Confidence 33444444442 3468999999975 43333 333333 2479999998766655544321 111222 2222
Q ss_pred cCCCCCCceeEEEecccccccCChHHHHHHHH
Q 026688 125 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEIS 156 (235)
Q Consensus 125 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~ 156 (235)
+........|+|++.....+.--....++.+.
T Consensus 322 dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 322 EMLACAAEADVVFTSTSSETPLFLKEHVEALP 353 (519)
T ss_pred hHHHHHhcCCEEEEccCCCCCeeCHHHHHHhh
Confidence 22111256899997654433222233444443
No 420
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=86.35 E-value=16 Score=29.67 Aligned_cols=94 Identities=21% Similarity=0.261 Sum_probs=54.8
Q ss_pred CCCeEEEecCCC-chHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEeccc-------ccCCCCC
Q 026688 61 LGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADI-------SRLPFAS 130 (235)
Q Consensus 61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d~-------~~~~~~~ 130 (235)
++.+||-.|+|. |..+..+++.. .. ++++++.++.-.+.+++ + + ... +.....+. ... ...
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~-~---g---~~~vi~~~~~~~~~~~~~i~~~-~~~ 247 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELARE-F---G---ADATIDIDELPDPQRRAIVRDI-TGG 247 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH-c---C---CCeEEcCcccccHHHHHHHHHH-hCC
Confidence 577888888754 55666666664 34 79999988876665543 1 1 111 01111111 111 123
Q ss_pred CceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 131 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 131 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
..+|+++-... ....+....+.++++|.++...
T Consensus 248 ~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 248 RGADVVIEASG------HPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCcEEEECCC------ChHHHHHHHHHhccCCEEEEEc
Confidence 46898884321 1235678889999999998654
No 421
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=86.30 E-value=2.7 Score=33.62 Aligned_cols=98 Identities=10% Similarity=0.072 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHhhcCCCC--CCe---EEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCee
Q 026688 43 FPGPEKEFELMKGYLKPVL--GGN---IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL 117 (235)
Q Consensus 43 ~~~~~~~~~~i~~~~~~~~--~~~---vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~ 117 (235)
.|.....+.+|-+++.... ..+ -+|||.|...+-..+..+-.+-...++|++.-.+..|+.+..++++ ...+.
T Consensus 79 VPnR~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~l--ss~ik 156 (419)
T KOG2912|consen 79 VPNRLNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNL--SSLIK 156 (419)
T ss_pred CccchhhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhcccccccc--cccee
Confidence 3555566677766664322 222 4788887754444443332234789999999999999999988776 44555
Q ss_pred EEecccccC-------CCCCCceeEEEecccc
Q 026688 118 LVRADISRL-------PFASSSIDAVHAGAAI 142 (235)
Q Consensus 118 ~~~~d~~~~-------~~~~~~~D~i~~~~~l 142 (235)
++.....+. ..++..||.++|+--+
T Consensus 157 vV~~~~~ktll~d~~~~~~e~~ydFcMcNPPF 188 (419)
T KOG2912|consen 157 VVKVEPQKTLLMDALKEESEIIYDFCMCNPPF 188 (419)
T ss_pred eEEecchhhcchhhhccCccceeeEEecCCch
Confidence 555433211 1224569999998644
No 422
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=86.21 E-value=6.7 Score=31.64 Aligned_cols=93 Identities=6% Similarity=0.036 Sum_probs=55.5
Q ss_pred CeEEEecC--CCchHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEeccccc-C-CCCCCceeEE
Q 026688 63 GNIIDASC--GSGLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISR-L-PFASSSIDAV 136 (235)
Q Consensus 63 ~~vLdiG~--G~G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d~~~-~-~~~~~~~D~i 136 (235)
.+||-.|+ |.|..+..+++.. .+ +|++++.+++-.+.+++.+.. .. +.....++.+ + ....+.+|+|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~lGa------~~vi~~~~~~~~~~i~~~~~~gvd~v 228 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSELGF------DAAINYKTDNVAERLRELCPEGVDVY 228 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhcCC------cEEEECCCCCHHHHHHHHCCCCceEE
Confidence 78988886 4577777777764 34 799999888777766653321 11 1111111111 0 0112468988
Q ss_pred EecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 137 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 137 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
+.... . ..+..+.++|+++|.++...
T Consensus 229 id~~g-----~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 229 FDNVG-----G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred EECCC-----c--HHHHHHHHHhccCCEEEEEe
Confidence 84221 2 13577889999999998754
No 423
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=86.20 E-value=7.8 Score=30.04 Aligned_cols=140 Identities=12% Similarity=-0.011 Sum_probs=80.1
Q ss_pred CCCeEEEecCCCchHHHHHHHcCC------------CceEEEEeCCHHHHHHHH-------------HHhhhcC------
Q 026688 61 LGGNIIDASCGSGLFSRIFAKSGL------------FSLVVALDYSENMLKQCY-------------EFVQQES------ 109 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~~~l~~~~~------------~~~v~~~D~s~~~~~~a~-------------~~~~~~~------ 109 (235)
..-.|+|+|-|+|.....+.+..+ ...++.++.+|.....+. .....+.
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~ 137 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC 137 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence 356899999999988776655321 224666665542221111 1111111
Q ss_pred ----CCCCCCeeEEecccccC-CCCCC---ceeEEEecccccccCCh----HHHHHHHHHhccCCcEEEEEEeccCCCcc
Q 026688 110 ----NFPKENFLLVRADISRL-PFASS---SIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFN 177 (235)
Q Consensus 110 ----~~~~~~~~~~~~d~~~~-~~~~~---~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~~~~~~~~~ 177 (235)
...........+|+... |.... .+|+++....- -..+| +.++..+++..+|||.+.--
T Consensus 138 ~r~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFs-P~kNP~mW~~e~l~~~a~~~~~~~~l~t~--------- 207 (252)
T COG4121 138 AAAVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFR-PVKNPEMWEDELLNLMARIPYRDPTLATF--------- 207 (252)
T ss_pred HHhhhcchheeeeeeeehhhcCCcccccccCccEEecCCcc-ccCChhhccHHHHHHHHhhcCCCCceech---------
Confidence 00123456677777542 32222 67888754433 23455 47899999999999987521
Q ss_pred cchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeC-cEEEEEEec
Q 026688 178 LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNR-GFVMFTATK 231 (235)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~-~~~~~~~~k 231 (235)
-+..-+++-|+++||++.+....+ ...+..+.|
T Consensus 208 ---------------------ssA~~vRr~L~~aGF~v~~r~g~grKRem~~a~~ 241 (252)
T COG4121 208 ---------------------AAAIAVRRRLEQAGFTVEKRTGRGKKRELLRGVK 241 (252)
T ss_pred ---------------------HHHHHHHHHHHHcCceeeecCCccccccchhhhc
Confidence 123456788899999988765333 344555544
No 424
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=85.88 E-value=17 Score=29.26 Aligned_cols=100 Identities=18% Similarity=0.205 Sum_probs=58.9
Q ss_pred cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C--CCCCCc
Q 026688 57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L--PFASSS 132 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~--~~~~~~ 132 (235)
....++.+||..|+|. |..+..+++.. ..+++++..+++..+.+++.- . ..-+.....++.+ + ..+...
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g-~-----~~v~~~~~~~~~~~l~~~~~~~~ 227 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELG-A-----DDTINVGDEDVAARLRELTDGEG 227 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhC-C-----CEEecCcccCHHHHHHHHhCCCC
Confidence 3445678999998764 66666777663 458888888887777664421 1 0001111111111 0 112345
Q ss_pred eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 133 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 133 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
+|+++.... ....+..+.+.|+++|.++...
T Consensus 228 vd~vld~~g------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 228 ADVVIDATG------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCEEEECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence 899985321 1245788899999999988654
No 425
>PRK06701 short chain dehydrogenase; Provisional
Probab=85.45 E-value=16 Score=28.80 Aligned_cols=103 Identities=19% Similarity=0.206 Sum_probs=56.9
Q ss_pred CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCH-HHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC---
Q 026688 62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSE-NMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA--- 129 (235)
Q Consensus 62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~-~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--- 129 (235)
++++|-.|++.| .++..+++++. +|+.++.++ ..++.....+... ..++.++.+|+.+.. +.
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~i~ 119 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE----GVKCLLIPGDVSDEAFCKDAVEETV 119 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHHHHHH
Confidence 567888887554 33445555554 788887764 2333333333322 235778888886532 10
Q ss_pred --CCceeEEEecccccc----cCC----------------hHHHHHHHHHhccCCcEEEEEEe
Q 026688 130 --SSSIDAVHAGAAIHC----WSS----------------PSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 130 --~~~~D~i~~~~~l~~----~~~----------------~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
.+..|+++.+..... +.+ +..+++.+.+.++++|.+++...
T Consensus 120 ~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 120 RELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred HHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 136798886644321 111 11345566666677777776553
No 426
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=85.41 E-value=8.4 Score=25.47 Aligned_cols=86 Identities=19% Similarity=0.098 Sum_probs=51.3
Q ss_pred CCCchHHHHHHHcC--CCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCceeEEEeccccc
Q 026688 70 CGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAVHAGAAIH 143 (235)
Q Consensus 70 ~G~G~~~~~l~~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~i~~~~~l~ 143 (235)
||.|..+..+++.. ....|+.+|.+++.++.+++. .+.++.+|..+.. ..-...|.+++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----------GVEVIYGDATDPEVLERAGIEKADAVVILTD-- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----------TSEEEES-TTSHHHHHHTTGGCESEEEEESS--
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----------ccccccccchhhhHHhhcCccccCEEEEccC--
Confidence 34455555554431 123799999999998887753 3678889987642 22357787775322
Q ss_pred ccCChH--HHHHHHHHhccCCcEEEEEEe
Q 026688 144 CWSSPS--TGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 144 ~~~~~~--~~l~~~~~~L~pgG~li~~~~ 170 (235)
+.. ..+-...+-+.|...++....
T Consensus 72 ---~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 72 ---DDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp ---SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred ---CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 332 234445566677777776543
No 427
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=85.35 E-value=15 Score=28.17 Aligned_cols=101 Identities=14% Similarity=0.071 Sum_probs=63.9
Q ss_pred HHHHHHhhcCCCCCCeEEEecCC-CchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC
Q 026688 49 EFELMKGYLKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 127 (235)
Q Consensus 49 ~~~~i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 127 (235)
-...+..++....-.++|-+|+- +|.+....+.... +|+.+|+.|.+.+.. ..++.|...- .
T Consensus 29 Ka~ai~~~le~~~~k~~lI~G~YltG~~iA~~L~~~~--eV~lvDI~p~lk~ll-----------~~~i~F~~~~----~ 91 (252)
T PF06690_consen 29 KANAIKYWLEGEEFKQALIFGAYLTGNFIASALSKKC--EVTLVDIHPHLKELL-----------NENIKFMEFR----N 91 (252)
T ss_pred HHHHHHHHhcccccceEEEEEEEeehHHHHHHhccCc--eEEEEeCcHHHHHHh-----------cCCCceeecc----C
Confidence 34566777776656699999985 4666655555433 999999999876655 2356665211 1
Q ss_pred CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccC
Q 026688 128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
-....+|+|+-...+.-+. + +..+-+.| ..+++.+|...
T Consensus 92 ~~~~~~DlIID~TGlGGv~-~-----~~Ls~~~p-~v~IVEdP~~~ 130 (252)
T PF06690_consen 92 GLEGNPDLIIDTTGLGGVD-P-----DFLSKFNP-KVFIVEDPKGD 130 (252)
T ss_pred CCCCCCCEEEECCCCCCCC-H-----HHHhccCC-CEEEEECCCcc
Confidence 1235799999877776552 2 22334444 57777777654
No 428
>PRK05854 short chain dehydrogenase; Provisional
Probab=85.28 E-value=10 Score=30.40 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=49.1
Q ss_pred CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----------C
Q 026688 62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F 128 (235)
Q Consensus 62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~ 128 (235)
++++|-.|++.| ..+..|++.+. +|+.+..+++-.+.+.+.+..... ..++.++..|+.+.. -
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~--~~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVP--DAKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCC--CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 578888887665 23444555554 899999888776666665543211 235788888987632 0
Q ss_pred CCCceeEEEecccc
Q 026688 129 ASSSIDAVHAGAAI 142 (235)
Q Consensus 129 ~~~~~D~i~~~~~l 142 (235)
..+..|+++.+...
T Consensus 90 ~~~~iD~li~nAG~ 103 (313)
T PRK05854 90 EGRPIHLLINNAGV 103 (313)
T ss_pred hCCCccEEEECCcc
Confidence 12468999987554
No 429
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.08 E-value=4 Score=32.97 Aligned_cols=93 Identities=19% Similarity=0.161 Sum_probs=55.6
Q ss_pred CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh-------cCCCC---CCCeeEEecccccCCCC
Q 026688 62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-------ESNFP---KENFLLVRADISRLPFA 129 (235)
Q Consensus 62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~-------~~~~~---~~~~~~~~~d~~~~~~~ 129 (235)
-++|--||+|+ | ..+..++..+. .|+..|.+++.++.++.++.. .+... ..++.+. .++.+ .
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~---a 80 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA---C 80 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH---H
Confidence 36799999995 4 45556666665 999999999888776654431 11100 0112211 12211 1
Q ss_pred CCceeEEEecccccccCCh----HHHHHHHHHhccCCcEE
Q 026688 130 SSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVF 165 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~l 165 (235)
-...|+|+ +.+++. ..+++++.+.++|+..|
T Consensus 81 v~~aDlVi-----EavpE~l~vK~~lf~~l~~~~~~~aIl 115 (321)
T PRK07066 81 VADADFIQ-----ESAPEREALKLELHERISRAAKPDAII 115 (321)
T ss_pred hcCCCEEE-----ECCcCCHHHHHHHHHHHHHhCCCCeEE
Confidence 14567777 444432 47888999999998733
No 430
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=85.05 E-value=7.7 Score=31.42 Aligned_cols=104 Identities=19% Similarity=0.132 Sum_probs=62.6
Q ss_pred HhhcCCCCCCeEEEecC--CCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC--C-C
Q 026688 54 KGYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--P-F 128 (235)
Q Consensus 54 ~~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~-~ 128 (235)
.......++.+||-.|+ |-|.++..|++..- ..++++--+++-.+.+++.-. ..-+.+...|+.+. . .
T Consensus 135 ~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G-~~~v~~~~s~~k~~~~~~lGA------d~vi~y~~~~~~~~v~~~t 207 (326)
T COG0604 135 FDRAGLKPGETVLVHGAAGGVGSAAIQLAKALG-ATVVAVVSSSEKLELLKELGA------DHVINYREEDFVEQVRELT 207 (326)
T ss_pred HHhcCCCCCCEEEEecCCchHHHHHHHHHHHcC-CcEEEEecCHHHHHHHHhcCC------CEEEcCCcccHHHHHHHHc
Confidence 33445566899999985 44778888888752 266666666655555554322 11233333333321 1 1
Q ss_pred CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688 129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
....+|+|+..-. ...+.+..+.|+++|.++.....
T Consensus 208 ~g~gvDvv~D~vG-------~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 208 GGKGVDVVLDTVG-------GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred CCCCceEEEECCC-------HHHHHHHHHHhccCCEEEEEecC
Confidence 2346999994222 24567789999999999886654
No 431
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=84.85 E-value=17 Score=30.24 Aligned_cols=39 Identities=23% Similarity=0.208 Sum_probs=27.1
Q ss_pred eEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q 026688 64 NIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 104 (235)
Q Consensus 64 ~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~ 104 (235)
+|--+|.|. |.-+..+...+. .|+++|++++.++..++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G~--~VigvD~d~~kv~~l~~g 41 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQNH--EVVALDILPSRVAMLNDR 41 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhCC--cEEEEECCHHHHHHHHcC
Confidence 466678884 543334434454 899999999998888763
No 432
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=84.73 E-value=6.5 Score=23.59 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeCcEEEE
Q 026688 148 PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMF 227 (235)
Q Consensus 148 ~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 227 (235)
|--.+++..+-+++|+.|.+..-.. -+..++..++++.|++.+.....+..+.+
T Consensus 12 Pvl~~kkal~~l~~G~~l~V~~d~~--------------------------~a~~di~~~~~~~G~~~~~~~~~~~~~~~ 65 (69)
T cd03420 12 PILKLKKEIDKLQDGEQLEVKASDP--------------------------GFARDAQAWCKSTGNTLISLETEKGKVKA 65 (69)
T ss_pred HHHHHHHHHHcCCCCCEEEEEECCc--------------------------cHHHHHHHHHHHcCCEEEEEEecCCEEEE
Confidence 3344677777888998776655432 35678999999999999877665655555
Q ss_pred EEec
Q 026688 228 TATK 231 (235)
Q Consensus 228 ~~~k 231 (235)
+.+|
T Consensus 66 ~I~k 69 (69)
T cd03420 66 VIEK 69 (69)
T ss_pred EEEC
Confidence 5554
No 433
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.69 E-value=15 Score=29.14 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=55.3
Q ss_pred CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-------CCCCC-------CCeeEEecccccC
Q 026688 63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------SNFPK-------ENFLLVRADISRL 126 (235)
Q Consensus 63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~~~~~-------~~~~~~~~d~~~~ 126 (235)
.+|.-||+|. | ..+..++..+. .|+.+|.+++.++.+.+++... +..+. .++.+ ..|...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH-
Confidence 5788899986 3 44556666665 8999999999888765433211 10000 11222 223321
Q ss_pred CCCCCceeEEEecccccccCCh----HHHHHHHHHhccCCcEEEEE
Q 026688 127 PFASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGT 168 (235)
Q Consensus 127 ~~~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~ 168 (235)
....|+|+. .+++. ..+++.+...++|+..++..
T Consensus 81 ---~~~aD~Vie-----avpe~~~~k~~~~~~l~~~~~~~~ii~s~ 118 (292)
T PRK07530 81 ---LADCDLVIE-----AATEDETVKRKIFAQLCPVLKPEAILATN 118 (292)
T ss_pred ---hcCCCEEEE-----cCcCCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 235688884 33332 36678888889998765533
No 434
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=84.62 E-value=4.2 Score=28.61 Aligned_cols=111 Identities=15% Similarity=0.100 Sum_probs=53.5
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-C
Q 026688 49 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P 127 (235)
Q Consensus 49 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~ 127 (235)
.+.++...+... +.-|||+|-|.|..=-++.+..|+..++++|-.-..-..+. .+.-.++.+|+.+. +
T Consensus 17 ~L~~a~~~v~~~-~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~----------P~~~~~ilGdi~~tl~ 85 (160)
T PF12692_consen 17 CLNWAAAQVAGL-PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSST----------PPEEDLILGDIRETLP 85 (160)
T ss_dssp HHHHHHHHTTT---S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG-------------GGGEEES-HHHHHH
T ss_pred HHHHHHHHhcCC-CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCC----------CchHheeeccHHHHhH
Confidence 344555555543 57899999999999999999999999999997321111110 12345677777552 2
Q ss_pred C---CCCceeEEEecccccccCChH----HHHHHHHHhccCCcEEEEEEe
Q 026688 128 F---ASSSIDAVHAGAAIHCWSSPS----TGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 128 ~---~~~~~D~i~~~~~l~~~~~~~----~~l~~~~~~L~pgG~li~~~~ 170 (235)
. -....-++-.....++-.... .+-.-+..+|.|||.++-..+
T Consensus 86 ~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~p 135 (160)
T PF12692_consen 86 ALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQP 135 (160)
T ss_dssp HHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS-
T ss_pred HHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 1 112222333222222211111 223356778999998875443
No 435
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=84.43 E-value=5.8 Score=28.29 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=46.1
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 141 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~ 141 (235)
+++||-+|.=...+...+..... ++.+...+-.. ...... ..++.+... . +.+ ....||.|+.
T Consensus 13 ~k~vL~~g~~~D~~~~~L~~~~~--~v~~~~~~~~~--~~~~~~-------~~~~~~~f~-~-~~~-~~~~~D~vvl--- 75 (155)
T PF08468_consen 13 GKSVLFAGDPQDDLPAQLPAIAV--SVHVFSYHHWY--ALQKQA-------QSNVQFHFG-A-ELP-ADQDFDTVVL--- 75 (155)
T ss_dssp T-EEEEEE---SSHHHHS--SEE--EEEESBHHHHH--HHHHHH-------GGGEEE-SS----HH-HHTT-SEEEE---
T ss_pred CCeEEEEcCCchhhHHHhhhcCC--EEEEEEchHHH--HHhHhc-------ccCceEeee-c-cCC-cccCCCEEEE---
Confidence 67799998777677777765432 55554422221 111111 123444311 1 112 1356999993
Q ss_pred ccccCCh----HHHHHHHHHhccCCcEEEEEEeccC
Q 026688 142 IHCWSSP----STGVAEISRVLRPGGVFVGTTYIVD 173 (235)
Q Consensus 142 l~~~~~~----~~~l~~~~~~L~pgG~li~~~~~~~ 173 (235)
++|.. .-.|..+...|++||.|+++.-+..
T Consensus 76 --y~PKaK~e~~~lL~~l~~~L~~g~~i~vVGEnk~ 109 (155)
T PF08468_consen 76 --YWPKAKAEAQYLLANLLSHLPPGTEIFVVGENKG 109 (155)
T ss_dssp --E--SSHHHHHHHHHHHHTTS-TT-EEEEEEEGGG
T ss_pred --EccCcHHHHHHHHHHHHHhCCCCCEEEEEecCcc
Confidence 34433 3568899999999999999988764
No 436
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=84.35 E-value=20 Score=29.61 Aligned_cols=99 Identities=17% Similarity=0.158 Sum_probs=56.3
Q ss_pred CCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCC-eeEEec---cc----ccCCC
Q 026688 58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRA---DI----SRLPF 128 (235)
Q Consensus 58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~---d~----~~~~~ 128 (235)
...++.+||-.|+|. |..+..+++......+++++.++.-.+.+++. + ... +..... +. ... .
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~----g---~~~~v~~~~~~~~~~~~~v~~~-~ 271 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEM----G---ADYVFNPTKMRDCLSGEKVMEV-T 271 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----C---CCEEEcccccccccHHHHHHHh-c
Confidence 344577888888764 55555566654322689999888755555542 1 101 111100 11 111 1
Q ss_pred CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 129 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 129 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
....+|+|+.. ...+...+..+.+.|+++|.++...
T Consensus 272 ~g~gvDvvld~-----~g~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 272 KGWGADIQVEA-----AGAPPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCCCCEEEEC-----CCCcHHHHHHHHHHHHcCCEEEEEC
Confidence 23468988843 2233345778889999999998754
No 437
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=84.14 E-value=10 Score=30.43 Aligned_cols=100 Identities=19% Similarity=0.136 Sum_probs=50.3
Q ss_pred CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688 62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 139 (235)
Q Consensus 62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~ 139 (235)
..+|+-+|+|. | .++..|++.+. .|+.+..++. +..++.-...... .....+........+.....+|+|+..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~--~V~~~~r~~~--~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~vila 79 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF--DVHFLLRSDY--EAVRENGLQVDSV-HGDFHLPPVQAYRSAEDMPPCDWVLVG 79 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC--eEEEEEeCCH--HHHHhCCeEEEeC-CCCeeecCceEEcchhhcCCCCEEEEE
Confidence 46899999996 4 56666777665 6777766542 2221110000000 011111100111111113568998864
Q ss_pred ccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
-=.++ ....++.+...+++++.++...
T Consensus 80 vK~~~---~~~~~~~l~~~~~~~~~iv~lq 106 (313)
T PRK06249 80 LKTTA---NALLAPLIPQVAAPDAKVLLLQ 106 (313)
T ss_pred ecCCC---hHhHHHHHhhhcCCCCEEEEec
Confidence 32222 2456777888888888766543
No 438
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=84.11 E-value=9.6 Score=31.37 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=70.9
Q ss_pred CCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCC-------------
Q 026688 62 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF------------- 128 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~------------- 128 (235)
..+.||.+|+.+.....+++..+..+--|+++..+.+..+........ .......+..+|....+.
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~-~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSE-HVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcc-cccccCceeccccccceeccccHHHHHhhcc
Confidence 478999999999999999988776677788888877777665433210 002234444444433220
Q ss_pred ----------------CCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCc
Q 026688 129 ----------------ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF 176 (235)
Q Consensus 129 ----------------~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~ 176 (235)
+...+|. ..+..|+.+...+.......++|+|.+++.+.....+.
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~~p~ 320 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRGLPE 320 (364)
T ss_pred chhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCcCCc
Confidence 0112222 23445555556778889999999999999887664433
No 439
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=84.08 E-value=0.7 Score=33.36 Aligned_cols=99 Identities=23% Similarity=0.205 Sum_probs=54.6
Q ss_pred CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEe-----------cccccCC
Q 026688 60 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-----------ADISRLP 127 (235)
Q Consensus 60 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-----------~d~~~~~ 127 (235)
.++.+|+-+|.|. |..+..++... .++++..|..+..++..+..... .+.+.. .+..+.+
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~~~~~~~~~~~~ 89 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLESLGAY-------FIEVDYEDHLERKDFDKADYYEHP 89 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHHHTTTE-------ESEETTTTTTTSB-CCHHHCHHHC
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhhcccCc-------eEEEcccccccccccchhhhhHHH
Confidence 3478999999997 66677776665 46999999998877766543221 122210 0000001
Q ss_pred ------CC--CCceeEEEecccccccCChHHHHHHHHHhccCCcEEE
Q 026688 128 ------FA--SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 166 (235)
Q Consensus 128 ------~~--~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li 166 (235)
+. -..+|+|+.......-..|.-+-++..+.++||..++
T Consensus 90 ~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIv 136 (168)
T PF01262_consen 90 ESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIV 136 (168)
T ss_dssp CHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEE
T ss_pred HHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEE
Confidence 10 1367988876555444445445566777788765554
No 440
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=84.07 E-value=13 Score=28.03 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=23.2
Q ss_pred CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCC
Q 026688 62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYS 94 (235)
Q Consensus 62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s 94 (235)
..+|+-+|||. | ..+..|++.+. .+++.+|.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gv-g~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGV-GNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 57899999985 5 45556666653 578888876
No 441
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=84.05 E-value=11 Score=25.72 Aligned_cols=72 Identities=15% Similarity=0.050 Sum_probs=51.6
Q ss_pred CCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHH
Q 026688 130 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 209 (235)
Q Consensus 130 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 209 (235)
.+..|+|++.+--..- +....|-.+.+.|..+|.+.+.+|... .....++.++.+...
T Consensus 43 ddvvD~vllWwR~~Dg-DL~D~LvDa~~~L~d~G~IWvltPK~g---------------------r~g~V~~~~I~eaA~ 100 (127)
T PF11253_consen 43 DDVVDVVLLWWRDDDG-DLVDALVDARTNLADDGVIWVLTPKAG---------------------RPGHVEPSDIREAAP 100 (127)
T ss_pred cccccEEEEEEECCcc-hHHHHHHHHHhhhcCCCEEEEEccCCC---------------------CCCCCCHHHHHHHHh
Confidence 3567888854332211 334667778889999999999887642 233578899999999
Q ss_pred HcCCceeEEEeeCc
Q 026688 210 ACGLVDFKCTRNRG 223 (235)
Q Consensus 210 ~~Gf~~~~~~~~~~ 223 (235)
.+|+...+....+.
T Consensus 101 taGL~~t~~~~v~~ 114 (127)
T PF11253_consen 101 TAGLVQTKSCAVGD 114 (127)
T ss_pred hcCCeeeeeeccCC
Confidence 99999888876554
No 442
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=84.00 E-value=10 Score=30.54 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=57.5
Q ss_pred cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeE
Q 026688 57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA 135 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 135 (235)
+...++.+||-.|+|. |..+..+++.. ..+++.++.+++-++.+++ +.. ..-+.....+....-.....+|+
T Consensus 159 ~~~~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~-~g~-----~~~i~~~~~~~~~~~~~~~~~d~ 231 (333)
T cd08296 159 SGAKPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLARK-LGA-----HHYIDTSKEDVAEALQELGGAKL 231 (333)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH-cCC-----cEEecCCCccHHHHHHhcCCCCE
Confidence 3455678999999764 66666666653 3479999998877777744 211 00011111111110000134788
Q ss_pred EEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
++.. .. ....+..+.+.++++|.++....
T Consensus 232 vi~~-----~g-~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 232 ILAT-----AP-NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred EEEC-----CC-chHHHHHHHHHcccCCEEEEEec
Confidence 8742 11 12457788999999999887543
No 443
>PRK06128 oxidoreductase; Provisional
Probab=83.85 E-value=20 Score=28.43 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=55.7
Q ss_pred CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCH--HHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C---
Q 026688 62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSE--NMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F--- 128 (235)
Q Consensus 62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~--~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 128 (235)
++++|-.|++.| .++..+++.+. .|+.+..+. ...+...+.+... ..++.++.+|+.+.. +
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~ 128 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAE----GRKAVALPGDLKDEAFCRQLVERA 128 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHc----CCeEEEEecCCCCHHHHHHHHHHH
Confidence 568888886544 23334555554 676665543 2233333333322 235677888886531 0
Q ss_pred --CCCceeEEEecccccc----cCC--h--------------HHHHHHHHHhccCCcEEEEEEe
Q 026688 129 --ASSSIDAVHAGAAIHC----WSS--P--------------STGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 129 --~~~~~D~i~~~~~l~~----~~~--~--------------~~~l~~~~~~L~pgG~li~~~~ 170 (235)
.-+..|+++.+..... +.+ . -.+++.+.+.++++|.++....
T Consensus 129 ~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 129 VKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 0146899997765421 111 1 1345666777778887776543
No 444
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=83.51 E-value=23 Score=28.94 Aligned_cols=94 Identities=20% Similarity=0.169 Sum_probs=54.8
Q ss_pred CCCCeEEEecCC-CchHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC------CCCCC
Q 026688 60 VLGGNIIDASCG-SGLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------PFASS 131 (235)
Q Consensus 60 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~ 131 (235)
.++.+||-.|+| .|..+..+++... .. +++++.++...+.+++ +.. ..+...+-... .....
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~s~~~~~~~~~-~g~--------~~v~~~~~~~~~~~l~~~~~~~ 255 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDVRDEKLAKAKE-LGA--------THTVNAAKEDAVAAIREITGGR 255 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH-hCC--------ceEecCCcccHHHHHHHHhCCC
Confidence 456788877765 3566666666543 35 8899888877766643 211 11111111110 11235
Q ss_pred ceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 132 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
.+|+|+.. .... ..+..+.+.|+++|.++...
T Consensus 256 ~~d~vld~-----vg~~-~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 256 GVDVVVEA-----LGKP-ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCCEEEEe-----CCCH-HHHHHHHHHHhcCCEEEEEc
Confidence 68988842 2222 25778889999999988764
No 445
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=83.51 E-value=12 Score=26.82 Aligned_cols=90 Identities=14% Similarity=0.048 Sum_probs=41.2
Q ss_pred CCeEEEecCCCchH-HHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688 62 GGNIIDASCGSGLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 140 (235)
Q Consensus 62 ~~~vLdiG~G~G~~-~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~ 140 (235)
+++|.=.|+|.... ...++...++.-...+|.++.-. .. ..+...+.++.-+.. .....|.|+...
T Consensus 68 gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~-------G~--~~PGt~ipI~~p~~l----~~~~pd~vivla 134 (160)
T PF08484_consen 68 GKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQ-------GK--YLPGTHIPIVSPEEL----KERKPDYVIVLA 134 (160)
T ss_dssp T--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGT-------TE--E-TTT--EEEEGGG------SS--SEEEES-
T ss_pred CCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhc-------Cc--ccCCCCCeECCHHHH----hhCCCCEEEEcC
Confidence 68899999988544 44555444433566889877311 00 111234444444432 234568877533
Q ss_pred cccccCChHHHHHHHHHhccCCcEEEEE
Q 026688 141 AIHCWSSPSTGVAEISRVLRPGGVFVGT 168 (235)
Q Consensus 141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~ 168 (235)
..+ .+.+.+++...++.||.+++-
T Consensus 135 w~y----~~EI~~~~~~~~~~gg~fi~p 158 (160)
T PF08484_consen 135 WNY----KDEIIEKLREYLERGGKFIVP 158 (160)
T ss_dssp GGG----HHHHHHHTHHHHHTT-EEEE-
T ss_pred hhh----HHHHHHHHHHHHhcCCEEEEe
Confidence 222 357788888899999999874
No 446
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=83.36 E-value=14 Score=26.38 Aligned_cols=110 Identities=23% Similarity=0.255 Sum_probs=59.0
Q ss_pred eEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688 64 NIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 141 (235)
Q Consensus 64 ~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~ 141 (235)
+|--||+|. | ..+..|++.+. .|++.|.+++..+...+. ... .+.+..+. ....|+|++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~--~v~~~d~~~~~~~~~~~~----------g~~-~~~s~~e~---~~~~dvvi~--- 63 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY--EVTVYDRSPEKAEALAEA----------GAE-VADSPAEA---AEQADVVIL--- 63 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT--EEEEEESSHHHHHHHHHT----------TEE-EESSHHHH---HHHBSEEEE---
T ss_pred EEEEEchHHHHHHHHHHHHhcCC--eEEeeccchhhhhhhHHh----------hhh-hhhhhhhH---hhcccceEe---
Confidence 566778875 2 44556666665 899999999777666542 122 22333332 134588884
Q ss_pred ccccCCh---HHHHHH--HHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCcee
Q 026688 142 IHCWSSP---STGVAE--ISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF 216 (235)
Q Consensus 142 l~~~~~~---~~~l~~--~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 216 (235)
.+++. +.++.. +...|++|..++ ...+.. | -+..++.+.++..|...+
T Consensus 64 --~v~~~~~v~~v~~~~~i~~~l~~g~iii-d~sT~~------p------------------~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 64 --CVPDDDAVEAVLFGENILAGLRPGKIII-DMSTIS------P------------------ETSRELAERLAAKGVRYV 116 (163)
T ss_dssp ---SSSHHHHHHHHHCTTHGGGS-TTEEEE-E-SS--------H------------------HHHHHHHHHHHHTTEEEE
T ss_pred --ecccchhhhhhhhhhHHhhccccceEEE-ecCCcc------h------------------hhhhhhhhhhhhccceee
Confidence 23443 345555 667777755444 332221 1 123566677777887666
Q ss_pred EEE
Q 026688 217 KCT 219 (235)
Q Consensus 217 ~~~ 219 (235)
+..
T Consensus 117 dap 119 (163)
T PF03446_consen 117 DAP 119 (163)
T ss_dssp EEE
T ss_pred eee
Confidence 555
No 447
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=83.34 E-value=5.9 Score=27.38 Aligned_cols=77 Identities=13% Similarity=0.067 Sum_probs=45.2
Q ss_pred CCCCeEEEecCCC-chH-HHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEE
Q 026688 60 VLGGNIIDASCGS-GLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 137 (235)
Q Consensus 60 ~~~~~vLdiG~G~-G~~-~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 137 (235)
..++++|-+|+|. |.. ...+...+. .+++.+..+.+-.+...+.+. ...+.+. ++.+..-....+|+|+
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~------~~~~~~~--~~~~~~~~~~~~DivI 80 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFG------GVNIEAI--PLEDLEEALQEADIVI 80 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHT------GCSEEEE--EGGGHCHHHHTESEEE
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcC------cccccee--eHHHHHHHHhhCCeEE
Confidence 3478999999975 333 334555543 469999998765555444431 2234443 3333321135799999
Q ss_pred eccccccc
Q 026688 138 AGAAIHCW 145 (235)
Q Consensus 138 ~~~~l~~~ 145 (235)
......+.
T Consensus 81 ~aT~~~~~ 88 (135)
T PF01488_consen 81 NATPSGMP 88 (135)
T ss_dssp E-SSTTST
T ss_pred EecCCCCc
Confidence 87766544
No 448
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=82.99 E-value=7.4 Score=29.03 Aligned_cols=32 Identities=16% Similarity=0.369 Sum_probs=22.9
Q ss_pred CCeEEEecCCC-ch-HHHHHHHcCCCceEEEEeCC
Q 026688 62 GGNIIDASCGS-GL-FSRIFAKSGLFSLVVALDYS 94 (235)
Q Consensus 62 ~~~vLdiG~G~-G~-~~~~l~~~~~~~~v~~~D~s 94 (235)
..+|+-+|||. |. .+..+++.+ ..+++.+|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~G-vg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAG-IGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC-CCEEEEECCC
Confidence 57899999985 53 455566655 3478888877
No 449
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=82.95 E-value=16 Score=29.08 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=51.8
Q ss_pred CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688 61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 139 (235)
Q Consensus 61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~ 139 (235)
.+.+++-+|+|. |......++.. .++|+++|.++...+.++. . ..++. ++.++...-..+|+|+..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~~~----~------G~~~~--~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKSAHLARITE----M------GLSPF--HLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH----c------CCeee--cHHHHHHHhCCCCEEEEC
Confidence 478999999986 44444444433 3599999999876555443 1 12221 111211112468999964
Q ss_pred ccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 140 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
- +. ..+-+...+.++||+.++-..
T Consensus 218 ~-----p~-~~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 218 I-----PA-LVLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred C-----Ch-hhhhHHHHHcCCCCcEEEEEc
Confidence 2 11 123456677789987766443
No 450
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=82.45 E-value=23 Score=28.24 Aligned_cols=94 Identities=18% Similarity=0.076 Sum_probs=55.9
Q ss_pred hcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCcee
Q 026688 56 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 134 (235)
Q Consensus 56 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 134 (235)
.....++.+||-.|+|. |..+..+++.. ..++++++.++...+.+++ + + +... .+.... +.+.+|
T Consensus 162 ~~~~~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~~-~---g------~~~~-~~~~~~--~~~~vD 227 (329)
T cd08298 162 LAGLKPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELARE-L---G------ADWA-GDSDDL--PPEPLD 227 (329)
T ss_pred hhCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHHH-h---C------CcEE-eccCcc--CCCccc
Confidence 34445577888888764 44545555543 3589999888876666633 1 1 1111 111111 234578
Q ss_pred EEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 135 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 135 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
+++.... ....+..+.+.++++|.++...
T Consensus 228 ~vi~~~~------~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 228 AAIIFAP------VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EEEEcCC------cHHHHHHHHHHhhcCCEEEEEc
Confidence 8774311 1245888999999999999754
No 451
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=82.23 E-value=24 Score=28.35 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=55.1
Q ss_pred CCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccC-CCCCCceeE
Q 026688 58 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDA 135 (235)
Q Consensus 58 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~ 135 (235)
...++.+||-.|+|. |..+..+++.. ..++++++.++...+.+++ +. . . .++...-... ....+.+|+
T Consensus 166 ~~~~g~~vlV~g~g~vG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~-~g------~-~-~vi~~~~~~~~~~~~~~~d~ 235 (337)
T cd05283 166 GVGPGKRVGVVGIGGLGHLAVKFAKAL-GAEVTAFSRSPSKKEDALK-LG------A-D-EFIATKDPEAMKKAAGSLDL 235 (337)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH-cC------C-c-EEecCcchhhhhhccCCceE
Confidence 345567787788754 55555566653 4589999998877777643 11 1 1 1111000000 001356888
Q ss_pred EEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
++.... .. ..+..+.+.|+++|.++....
T Consensus 236 v~~~~g-----~~-~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 236 IIDTVS-----AS-HDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred EEECCC-----Cc-chHHHHHHHhcCCCEEEEEec
Confidence 883221 11 236778899999998887643
No 452
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=82.18 E-value=14 Score=29.28 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=49.1
Q ss_pred eEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHH-hhhcCCCCCCCeeEEeccc-ccCCCCCCceeEEEec
Q 026688 64 NIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEF-VQQESNFPKENFLLVRADI-SRLPFASSSIDAVHAG 139 (235)
Q Consensus 64 ~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~i~~~ 139 (235)
+|+-+|+|. | .++..|++.+. .|+.++. ++.++..++. +..... .....+ .... .+.......+|+|+..
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~--~V~~~~r-~~~~~~~~~~g~~~~~~--~~~~~~-~~~~~~~~~~~~~~~d~vila 75 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR--DVTFLVR-PKRAKALRERGLVIRSD--HGDAVV-PGPVITDPEELTGPFDLVILA 75 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC--ceEEEec-HHHHHHHHhCCeEEEeC--CCeEEe-cceeecCHHHccCCCCEEEEE
Confidence 688899987 3 34556666665 7888888 6555554431 000000 001100 0000 1111112568988754
Q ss_pred ccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688 140 AAIHCWSSPSTGVAEISRVLRPGGVFVGT 168 (235)
Q Consensus 140 ~~l~~~~~~~~~l~~~~~~L~pgG~li~~ 168 (235)
---. +.+.+++.+...+.++..++..
T Consensus 76 vk~~---~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 76 VKAY---QLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred eccc---CHHHHHHHHHhhcCCCCEEEEe
Confidence 3222 2356778888888877655543
No 453
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=81.99 E-value=5.3 Score=29.80 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=23.5
Q ss_pred CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCC
Q 026688 62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYS 94 (235)
Q Consensus 62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s 94 (235)
..+||-+|||. | ..+..|++.+ ..+++.+|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCC
Confidence 57999999985 5 4455666655 3589999976
No 454
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=81.84 E-value=8.8 Score=34.78 Aligned_cols=101 Identities=14% Similarity=0.115 Sum_probs=60.6
Q ss_pred CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhc-------CCCC-------CCCeeEEecccccC
Q 026688 63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------SNFP-------KENFLLVRADISRL 126 (235)
Q Consensus 63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~~~~-------~~~~~~~~~d~~~~ 126 (235)
.+|.-||+|+ | ..+..++..+. .|+.+|.+++.++.+.+++... +... ..++++ ..|+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP-TLDYAG- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-eCCHHH-
Confidence 5799999998 4 44555566665 9999999999998877654321 1000 012222 122221
Q ss_pred CCCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688 127 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 127 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
-...|+|+=. +.+.+.-..++++++.+.++|+..|.-.+..
T Consensus 390 ---~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSs 430 (715)
T PRK11730 390 ---FERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILASNTST 430 (715)
T ss_pred ---hcCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 2456777721 2222222358899999999998776654443
No 455
>PRK08339 short chain dehydrogenase; Provisional
Probab=81.82 E-value=13 Score=28.80 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=48.4
Q ss_pred CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C----C
Q 026688 62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----A 129 (235)
Q Consensus 62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----~ 129 (235)
++++|-.|++.| ..+..+++.+. +|+.++.++..++...+.+.... ..++.++..|+.+.. + .
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES---NVDVSYIVADLTKREDLERTVKELKN 82 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc---CCceEEEEecCCCHHHHHHHHHHHHh
Confidence 567888887655 33445555665 89999998877776665554321 235778888887632 0 1
Q ss_pred CCceeEEEecccc
Q 026688 130 SSSIDAVHAGAAI 142 (235)
Q Consensus 130 ~~~~D~i~~~~~l 142 (235)
-+..|+++.+...
T Consensus 83 ~g~iD~lv~nag~ 95 (263)
T PRK08339 83 IGEPDIFFFSTGG 95 (263)
T ss_pred hCCCcEEEECCCC
Confidence 1468988876543
No 456
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=81.76 E-value=30 Score=29.11 Aligned_cols=46 Identities=7% Similarity=0.034 Sum_probs=28.8
Q ss_pred HhhcCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHH
Q 026688 54 KGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLK 99 (235)
Q Consensus 54 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~ 99 (235)
...+...++.+|+-+|+|. |......+.......++.++.++.-.+
T Consensus 172 ~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~ 218 (417)
T TIGR01035 172 ERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAE 218 (417)
T ss_pred HHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence 3344445578999999986 544443333322248999999876443
No 457
>PRK08177 short chain dehydrogenase; Provisional
Probab=81.76 E-value=20 Score=26.91 Aligned_cols=68 Identities=10% Similarity=0.065 Sum_probs=39.0
Q ss_pred CeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------CCCC
Q 026688 63 GNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FASS 131 (235)
Q Consensus 63 ~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~ 131 (235)
+++|-.|+..| .++..+++.+. +|++++.++.-.+.+++ ..++.+...|+.+.. +...
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~~~~ 70 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGPQQDTALQA---------LPGVHIEKLDMNDPASLDQLLQRLQGQ 70 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCCcchHHHHh---------ccccceEEcCCCCHHHHHHHHHHhhcC
Confidence 35676676433 23445555554 89999988755443322 124556667775531 2224
Q ss_pred ceeEEEeccc
Q 026688 132 SIDAVHAGAA 141 (235)
Q Consensus 132 ~~D~i~~~~~ 141 (235)
.+|+|+.+..
T Consensus 71 ~id~vi~~ag 80 (225)
T PRK08177 71 RFDLLFVNAG 80 (225)
T ss_pred CCCEEEEcCc
Confidence 6899887643
No 458
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=81.67 E-value=9.1 Score=30.39 Aligned_cols=92 Identities=13% Similarity=0.246 Sum_probs=52.9
Q ss_pred CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhh-------hcCCCCC-------CCeeEEecccccC
Q 026688 63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-------QESNFPK-------ENFLLVRADISRL 126 (235)
Q Consensus 63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~-------~~~~~~~-------~~~~~~~~d~~~~ 126 (235)
++|--||+|. | ..+..++..+. .|+++|.+++.++.+++++. ..+.... .++. ...+...
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~- 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLEE- 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHHH-
Confidence 5688899985 4 44555666654 89999999988887665432 1110000 0111 1122211
Q ss_pred CCCCCceeEEEecccccccCCh----HHHHHHHHHhccCCcEEE
Q 026688 127 PFASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFV 166 (235)
Q Consensus 127 ~~~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li 166 (235)
....|+|+. .+++. ..++.++.+.++|+..++
T Consensus 81 ---~~~aD~Vie-----av~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 81 ---LRDADFIIE-----AIVESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred ---hCCCCEEEE-----cCccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 245688884 33322 366778888888876554
No 459
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=81.56 E-value=27 Score=28.31 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=58.6
Q ss_pred cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-C-C-CCCCc
Q 026688 57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-P-FASSS 132 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~ 132 (235)
....++.+||-.|+|. |..+..+++......+++++.++...+.+++. .. ..-+.....++.+ + . .....
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga-----~~~i~~~~~~~~~~l~~~~~~~~ 241 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GA-----TIVLDPTEVDVVAEVRKLTGGGG 241 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC-----CEEECCCccCHHHHHHHHhCCCC
Confidence 3445578888888753 55666666654222788999888877777542 11 0001111111110 0 0 12235
Q ss_pred eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEec
Q 026688 133 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 171 (235)
Q Consensus 133 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 171 (235)
+|+++-.... ...++.+.+.|+++|.++.....
T Consensus 242 ~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~~ 274 (351)
T cd08233 242 VDVSFDCAGV------QATLDTAIDALRPRGTAVNVAIW 274 (351)
T ss_pred CCEEEECCCC------HHHHHHHHHhccCCCEEEEEccC
Confidence 8998843221 23577888999999998876543
No 460
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=81.56 E-value=9.1 Score=22.93 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeCcEEEE
Q 026688 148 PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMF 227 (235)
Q Consensus 148 ~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 227 (235)
|--.+++..+-+++|..+.+..-.. -+..++..++++.|++++.....+..+.+
T Consensus 12 P~i~~k~~l~~l~~G~~l~V~~dd~--------------------------~s~~di~~~~~~~g~~~~~~~~~~~~~~~ 65 (69)
T cd03423 12 PVMMLHKKVRKMKPGDTLLVLATDP--------------------------STTRDIPKFCTFLGHELLAQETEDEPYRY 65 (69)
T ss_pred HHHHHHHHHHcCCCCCEEEEEeCCC--------------------------chHHHHHHHHHHcCCEEEEEEEcCCEEEE
Confidence 3344667777788888776654332 35678999999999999887766655555
Q ss_pred EEec
Q 026688 228 TATK 231 (235)
Q Consensus 228 ~~~k 231 (235)
+.+|
T Consensus 66 ~I~k 69 (69)
T cd03423 66 LIRK 69 (69)
T ss_pred EEEC
Confidence 5443
No 461
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=81.54 E-value=16 Score=32.02 Aligned_cols=91 Identities=11% Similarity=0.080 Sum_probs=55.6
Q ss_pred CCeEEEecCCC-chHHH-HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCceeE
Q 026688 62 GGNIIDASCGS-GLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA 135 (235)
Q Consensus 62 ~~~vLdiG~G~-G~~~~-~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~ 135 (235)
...++-+|||. |.... .+.+++. .++.+|.+++.++.+++. ....+.+|..+.. ..-+..|.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~--~vvvId~d~~~~~~~~~~----------g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI--PLVVIETSRTRVDELRER----------GIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHC----------CCeEEEcCCCCHHHHHhcCccccCE
Confidence 36788888876 43333 3333444 899999999988888642 4668889987632 22357786
Q ss_pred EEecccccccCChH--HHHHHHHHhccCCcEEEEEE
Q 026688 136 VHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 136 i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~ 169 (235)
+++. .++.. ..+-.+.+...|...++...
T Consensus 485 viv~-----~~~~~~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 485 LLLT-----IPNGYEAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred EEEE-----cCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 6632 22222 22333445567777776543
No 462
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=81.29 E-value=9 Score=22.70 Aligned_cols=54 Identities=11% Similarity=0.043 Sum_probs=36.0
Q ss_pred HHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeCcEEEEEEe
Q 026688 151 GVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTAT 230 (235)
Q Consensus 151 ~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~ 230 (235)
.+++..+-+++|..+.+..-.. -+..++..++++.|++.......+..+.++.+
T Consensus 15 ~~~~~l~~l~~g~~l~v~~d~~--------------------------~~~~~i~~~~~~~g~~~~~~~~~~~~~~i~i~ 68 (69)
T cd00291 15 KTKKALEKLKSGEVLEVLLDDP--------------------------GAVEDIPAWAKETGHEVLEVEEEGGVYRILIR 68 (69)
T ss_pred HHHHHHhcCCCCCEEEEEecCC--------------------------cHHHHHHHHHHHcCCEEEEEEEeCCEEEEEEE
Confidence 3445555678888777654432 25678999999999998777655544444444
No 463
>PRK08507 prephenate dehydrogenase; Validated
Probab=81.17 E-value=12 Score=29.30 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=47.8
Q ss_pred eEEEecCCC--chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEeccc
Q 026688 64 NIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 141 (235)
Q Consensus 64 ~vLdiG~G~--G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~ 141 (235)
+|.-||+|. |.++..+.+.+....|+++|.+++.++.+.+ .+ -+. ...+..+. . + .|+|+..-.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g-----~~~-~~~~~~~~--~-~-aD~Vilavp 67 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LG-----LVD-EIVSFEEL--K-K-CDVIFLAIP 67 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CC-----CCc-ccCCHHHH--h-c-CCEEEEeCc
Confidence 577788876 3456666666644579999999887776643 11 111 11122221 1 2 688885432
Q ss_pred ccccCChHHHHHHHHHhccCCcEEE
Q 026688 142 IHCWSSPSTGVAEISRVLRPGGVFV 166 (235)
Q Consensus 142 l~~~~~~~~~l~~~~~~L~pgG~li 166 (235)
... ....+.++.. ++++..++
T Consensus 68 ~~~---~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 68 VDA---IIEILPKLLD-IKENTTII 88 (275)
T ss_pred HHH---HHHHHHHHhc-cCCCCEEE
Confidence 221 1355666766 77765443
No 464
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=81.00 E-value=19 Score=32.14 Aligned_cols=92 Identities=15% Similarity=0.236 Sum_probs=57.3
Q ss_pred CCeEEEecCCC-chHHHH-HHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCceeE
Q 026688 62 GGNIIDASCGS-GLFSRI-FAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA 135 (235)
Q Consensus 62 ~~~vLdiG~G~-G~~~~~-l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~ 135 (235)
..+|+-+|||. |..... +.+.+. .++.+|.|++.++.+++. ...++.+|..+.. ..-+..|+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~--~vvvID~d~~~v~~~~~~----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV--KMTVLDHDPDHIETLRKF----------GMKVFYGDATRMDLLESAGAAKAEV 467 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC--CEEEEECCHHHHHHHHhc----------CCeEEEEeCCCHHHHHhcCCCcCCE
Confidence 46899999986 654443 333343 899999999998888652 3567889987642 22356787
Q ss_pred EEecccccccCChH--HHHHHHHHhccCCcEEEEEEe
Q 026688 136 VHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 136 i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~li~~~~ 170 (235)
+++. .+|.+ ..+-...+.+.|+-.++.-..
T Consensus 468 vvv~-----~~d~~~n~~i~~~ar~~~p~~~iiaRa~ 499 (621)
T PRK03562 468 LINA-----IDDPQTSLQLVELVKEHFPHLQIIARAR 499 (621)
T ss_pred EEEE-----eCCHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 7742 23333 223334445567666665443
No 465
>PRK07890 short chain dehydrogenase; Provisional
Probab=80.97 E-value=14 Score=28.18 Aligned_cols=75 Identities=20% Similarity=0.193 Sum_probs=47.9
Q ss_pred CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-C---------
Q 026688 62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F--------- 128 (235)
Q Consensus 62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~--------- 128 (235)
++++|-.|++.| .++..+++++. .|++++.++..++.....+... ..++.++..|+.+.. .
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDL----GRRALAVPTDITDEDQCANLVALALE 78 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHh----CCceEEEecCCCCHHHHHHHHHHHHH
Confidence 568888887554 23344555665 8999999887766665555432 235778888886531 0
Q ss_pred CCCceeEEEecccc
Q 026688 129 ASSSIDAVHAGAAI 142 (235)
Q Consensus 129 ~~~~~D~i~~~~~l 142 (235)
.-+..|+++.+...
T Consensus 79 ~~g~~d~vi~~ag~ 92 (258)
T PRK07890 79 RFGRVDALVNNAFR 92 (258)
T ss_pred HcCCccEEEECCcc
Confidence 01468999877643
No 466
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=80.79 E-value=11 Score=28.79 Aligned_cols=66 Identities=24% Similarity=0.228 Sum_probs=44.1
Q ss_pred CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCceeEE
Q 026688 63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAV 136 (235)
Q Consensus 63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~i 136 (235)
++++-+|||. | ..+..|.+.+. .|+.+|.+++.++..... ......+++|..+.. ..-..+|++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~~~~--------~~~~~~v~gd~t~~~~L~~agi~~aD~v 70 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH--NVVLIDRDEERVEEFLAD--------ELDTHVVIGDATDEDVLEEAGIDDADAV 70 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC--ceEEEEcCHHHHHHHhhh--------hcceEEEEecCCCHHHHHhcCCCcCCEE
Confidence 3678889986 3 44455666655 899999999887773331 124667788886632 234678988
Q ss_pred Ee
Q 026688 137 HA 138 (235)
Q Consensus 137 ~~ 138 (235)
++
T Consensus 71 va 72 (225)
T COG0569 71 VA 72 (225)
T ss_pred EE
Confidence 86
No 467
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=80.63 E-value=14 Score=24.50 Aligned_cols=92 Identities=20% Similarity=0.101 Sum_probs=54.7
Q ss_pred eEEEecCCCc-h-HHHHHHHcCCCceEE-EEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEecc
Q 026688 64 NIIDASCGSG-L-FSRIFAKSGLFSLVV-ALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 140 (235)
Q Consensus 64 ~vLdiG~G~G-~-~~~~l~~~~~~~~v~-~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~ 140 (235)
+|.-||+|.. . ....+.+..+..++. .+|.++...+.+.+.. .+. ...|..++. .....|+|+...
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~---------~~~-~~~~~~~ll-~~~~~D~V~I~t 70 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY---------GIP-VYTDLEELL-ADEDVDAVIIAT 70 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT---------TSE-EESSHHHHH-HHTTESEEEEES
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh---------ccc-chhHHHHHH-HhhcCCEEEEec
Confidence 5778899763 2 233555554555655 6899988777765443 222 445555432 234789998533
Q ss_pred cccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688 141 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 141 ~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
.- ..-...+..+++-|-.+++.-|..
T Consensus 71 p~------~~h~~~~~~~l~~g~~v~~EKP~~ 96 (120)
T PF01408_consen 71 PP------SSHAEIAKKALEAGKHVLVEKPLA 96 (120)
T ss_dssp SG------GGHHHHHHHHHHTTSEEEEESSSS
T ss_pred CC------cchHHHHHHHHHcCCEEEEEcCCc
Confidence 22 223556777777777777765543
No 468
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=80.51 E-value=17 Score=34.40 Aligned_cols=71 Identities=21% Similarity=0.071 Sum_probs=42.4
Q ss_pred CCeEEEecCCC-chHHHHHHHcCCCce-------------EEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc--
Q 026688 62 GGNIIDASCGS-GLFSRIFAKSGLFSL-------------VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-- 125 (235)
Q Consensus 62 ~~~vLdiG~G~-G~~~~~l~~~~~~~~-------------v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-- 125 (235)
.++|+-+|||. |......+...++.. |+.+|+++...+.+.+.. +++..+..|+.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~--------~~~~~v~lDv~D~e 640 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI--------ENAEAVQLDVSDSE 640 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc--------CCCceEEeecCCHH
Confidence 57999999985 665555544444434 888999876655444332 244455555543
Q ss_pred -CCCCCCceeEEEecc
Q 026688 126 -LPFASSSIDAVHAGA 140 (235)
Q Consensus 126 -~~~~~~~~D~i~~~~ 140 (235)
+.-.-...|+|++..
T Consensus 641 ~L~~~v~~~DaVIsal 656 (1042)
T PLN02819 641 SLLKYVSQVDVVISLL 656 (1042)
T ss_pred HHHHhhcCCCEEEECC
Confidence 211113589999653
No 469
>PRK07102 short chain dehydrogenase; Provisional
Probab=80.50 E-value=13 Score=28.32 Aligned_cols=73 Identities=14% Similarity=0.063 Sum_probs=43.8
Q ss_pred CeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-C------CCCc
Q 026688 63 GNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F------ASSS 132 (235)
Q Consensus 63 ~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~------~~~~ 132 (235)
++++-.|+..| .++..+++.+. +|++++.++.-.+...+.+.... ..++.++.+|+.+.. . ....
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG---AVAVSTHELDILDTASHAAFLDSLPAL 76 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc---CCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 46777775443 23334455554 89999998876655444443321 346888889987632 0 0134
Q ss_pred eeEEEecc
Q 026688 133 IDAVHAGA 140 (235)
Q Consensus 133 ~D~i~~~~ 140 (235)
+|+++.+.
T Consensus 77 ~d~vv~~a 84 (243)
T PRK07102 77 PDIVLIAV 84 (243)
T ss_pred CCEEEECC
Confidence 78888654
No 470
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=80.34 E-value=29 Score=27.93 Aligned_cols=97 Identities=21% Similarity=0.261 Sum_probs=57.5
Q ss_pred hcCCCCCCeEEEecCCC-chHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecc------cccCC
Q 026688 56 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD------ISRLP 127 (235)
Q Consensus 56 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d------~~~~~ 127 (235)
.....++.+||..|+|. |..+..+++.. ... +++++.++...+.+++. + . ..+...+ +...
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~----g---~--~~~~~~~~~~~~~~~~~- 222 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVAREL----G---A--DDTINPKEEDVEKVREL- 222 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHc----C---C--CEEecCccccHHHHHHH-
Confidence 33445677899988765 66666666654 344 89998888766665431 1 1 1111111 1111
Q ss_pred CCCCceeEEEecccccccCChHHHHHHHHHhccCCcEEEEEE
Q 026688 128 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 128 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~ 169 (235)
.....+|+++... .....+..+.+.|+++|.++...
T Consensus 223 ~~~~~~d~vld~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 223 TEGRGADLVIEAA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred hCCCCCCEEEECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 1234589988431 12345778899999999988765
No 471
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=80.34 E-value=17 Score=30.69 Aligned_cols=101 Identities=11% Similarity=0.060 Sum_probs=57.5
Q ss_pred HHHHHHHhhcCC-CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc
Q 026688 48 KEFELMKGYLKP-VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 125 (235)
Q Consensus 48 ~~~~~i~~~~~~-~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 125 (235)
..++.+...... ..+++|+-+|+|. |......++.. .++|+.+|.++.-...+... ...+ .++.+
T Consensus 197 s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~~----------G~~v--~~l~e 263 (425)
T PRK05476 197 SLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQAAMD----------GFRV--MTMEE 263 (425)
T ss_pred hhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHHhc----------CCEe--cCHHH
Confidence 334444443222 2578999999987 55444444432 45899999998654333221 1111 22222
Q ss_pred CCCCCCceeEEEecccccccCChHHHHH-HHHHhccCCcEEEEEEe
Q 026688 126 LPFASSSIDAVHAGAAIHCWSSPSTGVA-EISRVLRPGGVFVGTTY 170 (235)
Q Consensus 126 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~-~~~~~L~pgG~li~~~~ 170 (235)
. ....|+|+... .+ ...+. .....+|+|+.++....
T Consensus 264 a---l~~aDVVI~aT-----G~-~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 264 A---AELGDIFVTAT-----GN-KDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred H---HhCCCEEEECC-----CC-HHHHHHHHHhcCCCCCEEEEcCC
Confidence 1 13579988643 12 23444 68888999988776543
No 472
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=80.34 E-value=15 Score=32.60 Aligned_cols=94 Identities=11% Similarity=0.170 Sum_probs=58.0
Q ss_pred CCeEEEecCCC-chHHH-HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC----CCCCceeE
Q 026688 62 GGNIIDASCGS-GLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA 135 (235)
Q Consensus 62 ~~~vLdiG~G~-G~~~~-~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~ 135 (235)
...|+-+|+|. |.... .+.+.+. .++.+|.+++.++.+++. ...++.+|..+.. ..-++.|+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~--~vvvID~d~~~v~~~~~~----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM--RITVLERDISAVNLMRKY----------GYKVYYGDATQLELLRAAGAEKAEA 467 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC--CEEEEECCHHHHHHHHhC----------CCeEEEeeCCCHHHHHhcCCccCCE
Confidence 35788877775 44333 3333343 899999999998888652 3567889987642 22356777
Q ss_pred EEecccccccCChHH--HHHHHHHhccCCcEEEEEEecc
Q 026688 136 VHAGAAIHCWSSPST--GVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 136 i~~~~~l~~~~~~~~--~l~~~~~~L~pgG~li~~~~~~ 172 (235)
+++. .+|.+. .+-...+.+.|...++....+.
T Consensus 468 vv~~-----~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 468 IVIT-----CNEPEDTMKIVELCQQHFPHLHILARARGR 501 (601)
T ss_pred EEEE-----eCCHHHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 7742 333332 2333455567888887755543
No 473
>PRK05867 short chain dehydrogenase; Provisional
Probab=80.30 E-value=14 Score=28.34 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=48.9
Q ss_pred CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688 62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----- 128 (235)
Q Consensus 62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----- 128 (235)
++++|-.|++.| ..+..+++.+. +|..++.+++.++...+.+... ..++.++..|+.+.. +
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTS----GGKVVPVCCDVSQHQQVTSMLDQVTA 82 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 578888888655 33445555555 8999999887777666655443 235677788886532 0
Q ss_pred CCCceeEEEecccc
Q 026688 129 ASSSIDAVHAGAAI 142 (235)
Q Consensus 129 ~~~~~D~i~~~~~l 142 (235)
.-+..|+++.+...
T Consensus 83 ~~g~id~lv~~ag~ 96 (253)
T PRK05867 83 ELGGIDIAVCNAGI 96 (253)
T ss_pred HhCCCCEEEECCCC
Confidence 01478999976554
No 474
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=80.29 E-value=6.1 Score=28.91 Aligned_cols=97 Identities=16% Similarity=0.274 Sum_probs=56.7
Q ss_pred eEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhh-------cCCCC-------CCCeeEEecccccCC
Q 026688 64 NIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-------ESNFP-------KENFLLVRADISRLP 127 (235)
Q Consensus 64 ~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~-------~~~~~-------~~~~~~~~~d~~~~~ 127 (235)
+|.-+|+|+ | ..+..++..+. +|+.+|.+++.++.+++++.. .+... ..++. ...|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH-
Confidence 466789986 5 44445555555 999999999999988876654 11000 01222 33444332
Q ss_pred CCCCceeEEEecccccccCCh----HHHHHHHHHhccCCcEEEEEEecc
Q 026688 128 FASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 128 ~~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
...|+|+ +..+.. ..+++++.+.+.|+..|.-.+...
T Consensus 77 ---~~adlVi-----Eai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 77 ---VDADLVI-----EAIPEDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp ---CTESEEE-----E-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred ---hhhheeh-----hhccccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 2578877 444332 578999999999988877655443
No 475
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.23 E-value=13 Score=29.80 Aligned_cols=41 Identities=29% Similarity=0.416 Sum_probs=30.5
Q ss_pred CCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q 026688 62 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEF 104 (235)
Q Consensus 62 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~ 104 (235)
-.+|.-||+|. | .++..+++.+. +|+++|.+++.++.+++.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~ 46 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGL--QVVLIDVMEGALERARGV 46 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHH
Confidence 35788899986 3 44555666554 899999999988887764
No 476
>PRK06172 short chain dehydrogenase; Provisional
Probab=80.15 E-value=16 Score=27.97 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=47.9
Q ss_pred CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688 62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----- 128 (235)
Q Consensus 62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----- 128 (235)
++++|-.|++.| .++..+++.+. +|+.++.++..++...+.+... ..++.++..|+.+.. +
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~i~~~~~~~~~ 80 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIREA----GGEALFVACDVTRDAEVKALVEQTIA 80 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 578888887554 23334555554 8999999887766665555433 336788888887531 0
Q ss_pred CCCceeEEEecccc
Q 026688 129 ASSSIDAVHAGAAI 142 (235)
Q Consensus 129 ~~~~~D~i~~~~~l 142 (235)
..+..|+++.+...
T Consensus 81 ~~g~id~li~~ag~ 94 (253)
T PRK06172 81 AYGRLDYAFNNAGI 94 (253)
T ss_pred HhCCCCEEEECCCC
Confidence 01367999977554
No 477
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=79.88 E-value=11 Score=23.26 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=21.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCCchHHH-HHHHc-CCCceEEEEeCC
Q 026688 51 ELMKGYLKPVLGGNIIDASCGSGLFSR-IFAKS-GLFSLVVALDYS 94 (235)
Q Consensus 51 ~~i~~~~~~~~~~~vLdiG~G~G~~~~-~l~~~-~~~~~v~~~D~s 94 (235)
+.+...-....+++||-+||.+|.-+. .++.. +..+..+++-..
T Consensus 28 ~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 28 EYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp HHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred HHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 333333333446899999999985443 23222 455677777653
No 478
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=79.73 E-value=12 Score=23.28 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeCcEE
Q 026688 146 SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFV 225 (235)
Q Consensus 146 ~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 225 (235)
|-|--.+++..+-+++|+.|.+..-.. -+..++..++++.|.+++.....+..+
T Consensus 20 P~Pll~~kk~l~~l~~G~~l~V~~dd~--------------------------~~~~di~~~~~~~G~~~~~~~~~~g~~ 73 (81)
T PRK00299 20 PEPVMMVRKTVRNMQPGETLLIIADDP--------------------------ATTRDIPSFCRFMDHELLAQETEQLPY 73 (81)
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEeCCc--------------------------cHHHHHHHHHHHcCCEEEEEEecCCEE
Confidence 445455778888889999777654332 256788999999999998776656555
Q ss_pred EEEEec
Q 026688 226 MFTATK 231 (235)
Q Consensus 226 ~~~~~k 231 (235)
.+..+|
T Consensus 74 ~~~I~k 79 (81)
T PRK00299 74 RYLIRK 79 (81)
T ss_pred EEEEEE
Confidence 555554
No 479
>PRK07677 short chain dehydrogenase; Provisional
Probab=79.54 E-value=16 Score=27.99 Aligned_cols=73 Identities=25% Similarity=0.251 Sum_probs=45.6
Q ss_pred CeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-C---------C
Q 026688 63 GNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F---------A 129 (235)
Q Consensus 63 ~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~---------~ 129 (235)
+++|-.|++.| .++..+++++. .|++++.++..++...+.+... ..++.++..|+.+.. . .
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQF----PGQVLTVQMDVRNPEDVQKMVEQIDEK 75 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 56787787654 23344555554 8999999887666665555432 235778888886521 0 0
Q ss_pred CCceeEEEeccc
Q 026688 130 SSSIDAVHAGAA 141 (235)
Q Consensus 130 ~~~~D~i~~~~~ 141 (235)
-+..|.++.+..
T Consensus 76 ~~~id~lI~~ag 87 (252)
T PRK07677 76 FGRIDALINNAA 87 (252)
T ss_pred hCCccEEEECCC
Confidence 146799887653
No 480
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=79.52 E-value=11 Score=32.27 Aligned_cols=41 Identities=17% Similarity=-0.065 Sum_probs=30.0
Q ss_pred CeEEEecCCCchHHH--HHHHcCCCceEEEEeCCHHHHHHHHH
Q 026688 63 GNIIDASCGSGLFSR--IFAKSGLFSLVVALDYSENMLKQCYE 103 (235)
Q Consensus 63 ~~vLdiG~G~G~~~~--~l~~~~~~~~v~~~D~s~~~~~~a~~ 103 (235)
.+|.-+|+|...+.. .+++.+...+|+++|+++.-++..++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~ 44 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNS 44 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHc
Confidence 468888999854443 45555555589999999988887664
No 481
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=79.41 E-value=7.9 Score=33.01 Aligned_cols=87 Identities=11% Similarity=0.117 Sum_probs=51.7
Q ss_pred CCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEec
Q 026688 61 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 139 (235)
Q Consensus 61 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~ 139 (235)
.+++|+-+|+|. |......++. ..++|+++|.++.....+.. . ...+ .++.+. -...|+|++.
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a-~Ga~ViV~e~dp~~a~~A~~----~------G~~~--~~leel---l~~ADIVI~a 316 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRG-FGARVVVTEIDPICALQAAM----E------GYQV--VTLEDV---VETADIFVTA 316 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCchhHHHHHh----c------Ccee--ccHHHH---HhcCCEEEEC
Confidence 578999999997 5444444433 24589999988764433322 1 1222 233322 2457999875
Q ss_pred ccccccCChHHHH-HHHHHhccCCcEEEEEE
Q 026688 140 AAIHCWSSPSTGV-AEISRVLRPGGVFVGTT 169 (235)
Q Consensus 140 ~~l~~~~~~~~~l-~~~~~~L~pgG~li~~~ 169 (235)
.. .. .++ .+....+|||+.|+-..
T Consensus 317 tG-----t~-~iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 317 TG-----NK-DIITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred CC-----cc-cccCHHHHhccCCCcEEEEcC
Confidence 32 22 233 47788899998887543
No 482
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=79.33 E-value=30 Score=27.49 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=40.9
Q ss_pred CCCeEEEecCCCchHH---HHHHHcCCCceEEEEeCCHH---HHHHHHHHhhhcCCCCCCCeeEEecccccC---CCCCC
Q 026688 61 LGGNIIDASCGSGLFS---RIFAKSGLFSLVVALDYSEN---MLKQCYEFVQQESNFPKENFLLVRADISRL---PFASS 131 (235)
Q Consensus 61 ~~~~vLdiG~G~G~~~---~~l~~~~~~~~v~~~D~s~~---~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~ 131 (235)
.++++|-+|+| |.-. ..+++.+. .+|+.++.++. -.+...+.+... ...+.+...|..+. .-.-.
T Consensus 125 ~~k~vlI~GAG-GagrAia~~La~~G~-~~V~I~~R~~~~~~~a~~l~~~l~~~----~~~~~~~~~d~~~~~~~~~~~~ 198 (289)
T PRK12548 125 KGKKLTVIGAG-GAATAIQVQCALDGA-KEITIFNIKDDFYERAEQTAEKIKQE----VPECIVNVYDLNDTEKLKAEIA 198 (289)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHCCC-CEEEEEeCCchHHHHHHHHHHHHhhc----CCCceeEEechhhhhHHHhhhc
Confidence 35789999996 4221 12334443 25889998863 233322323221 12333444455432 11113
Q ss_pred ceeEEEecccccccC
Q 026688 132 SIDAVHAGAAIHCWS 146 (235)
Q Consensus 132 ~~D~i~~~~~l~~~~ 146 (235)
.+|+|+.+..+...+
T Consensus 199 ~~DilINaTp~Gm~~ 213 (289)
T PRK12548 199 SSDILVNATLVGMKP 213 (289)
T ss_pred cCCEEEEeCCCCCCC
Confidence 579999877766443
No 483
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=79.31 E-value=33 Score=28.04 Aligned_cols=102 Identities=17% Similarity=0.141 Sum_probs=57.7
Q ss_pred cCCCCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEec--cccc-C-CCCCC
Q 026688 57 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA--DISR-L-PFASS 131 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~~ 131 (235)
....++.+||-.|+|. |..+..+++......+++++.++.-.+.+++ +.... -+..... +..+ + ....+
T Consensus 179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~~~-----~v~~~~~~~~~~~~l~~~~~~ 252 (365)
T cd05279 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ-LGATE-----CINPRDQDKPIVEVLTEMTDG 252 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCCCe-----ecccccccchHHHHHHHHhCC
Confidence 3445678888888764 5566666665432358888988887777744 22110 0111111 1100 0 01124
Q ss_pred ceeEEEecccccccCChHHHHHHHHHhcc-CCcEEEEEEe
Q 026688 132 SIDAVHAGAAIHCWSSPSTGVAEISRVLR-PGGVFVGTTY 170 (235)
Q Consensus 132 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~-pgG~li~~~~ 170 (235)
.+|+++-.. .. ...+....+.++ ++|.++....
T Consensus 253 ~~d~vid~~-----g~-~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 253 GVDYAFEVI-----GS-ADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred CCcEEEECC-----CC-HHHHHHHHHHhccCCCEEEEEec
Confidence 688888422 11 245777888899 9999887654
No 484
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=79.27 E-value=20 Score=28.75 Aligned_cols=94 Identities=18% Similarity=0.113 Sum_probs=54.7
Q ss_pred CeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc--------ccCCCCCCc
Q 026688 63 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--------SRLPFASSS 132 (235)
Q Consensus 63 ~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~--------~~~~~~~~~ 132 (235)
.+|+-+|+|. | .++..|++.+. .|+.+-.++. ++..++. + +.+...+- ...+.....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~--~V~~~~R~~~-~~~l~~~----G------L~i~~~~~~~~~~~~~~~~~~~~~~ 67 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGH--DVTLLVRSRR-LEALKKK----G------LRIEDEGGNFTTPVVAATDAEALGP 67 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC--eEEEEecHHH-HHHHHhC----C------eEEecCCCccccccccccChhhcCC
Confidence 3788999996 4 55666666663 6666666554 5555543 1 11111111 011112357
Q ss_pred eeEEEecccccccCChHHHHHHHHHhccCCcEEEEEEecc
Q 026688 133 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 172 (235)
Q Consensus 133 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 172 (235)
+|+|+..-=-+ +.+.+++.+...++|...+++.-...
T Consensus 68 ~Dlviv~vKa~---q~~~al~~l~~~~~~~t~vl~lqNG~ 104 (307)
T COG1893 68 ADLVIVTVKAY---QLEEALPSLAPLLGPNTVVLFLQNGL 104 (307)
T ss_pred CCEEEEEeccc---cHHHHHHHhhhcCCCCcEEEEEeCCC
Confidence 89999532222 34578899999999988777655443
No 485
>PRK07063 short chain dehydrogenase; Provisional
Probab=79.22 E-value=18 Score=27.83 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=49.1
Q ss_pred CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688 62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----- 128 (235)
Q Consensus 62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----- 128 (235)
++++|-.|++.| ..+..+++++. +|+.++.+++.++...+.+..... ..++.++..|+.+.. +
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVA--GARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccC--CceEEEEEccCCCHHHHHHHHHHHHH
Confidence 578888887654 23445555554 899999988777776666543211 345778888886532 0
Q ss_pred CCCceeEEEecccc
Q 026688 129 ASSSIDAVHAGAAI 142 (235)
Q Consensus 129 ~~~~~D~i~~~~~l 142 (235)
.-+..|.++.+...
T Consensus 83 ~~g~id~li~~ag~ 96 (260)
T PRK07063 83 AFGPLDVLVNNAGI 96 (260)
T ss_pred HhCCCcEEEECCCc
Confidence 01468999876554
No 486
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=79.09 E-value=11 Score=22.54 Aligned_cols=58 Identities=17% Similarity=0.160 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhccCCcEEEEEEeccCCCcccchhHHHHHHhHhhcCCceeecCHHHHHHHHHHcCCceeEEEeeCcEEEE
Q 026688 148 PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMF 227 (235)
Q Consensus 148 ~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 227 (235)
|--..++..+-+++|..|.+..-.. -+..++..++++.|++++.....+..+.+
T Consensus 12 Pvi~~kkal~~l~~G~~l~V~~d~~--------------------------~s~~ni~~~~~~~g~~v~~~~~~~~~~~~ 65 (69)
T cd03422 12 PAIATLEALPSLKPGEILEVISDCP--------------------------QSINNIPIDARNHGYKVLAIEQSGPTIRY 65 (69)
T ss_pred HHHHHHHHHHcCCCCCEEEEEecCc--------------------------hHHHHHHHHHHHcCCEEEEEEecCCEEEE
Confidence 3344667777788888766644332 35678999999999999876655555555
Q ss_pred EEec
Q 026688 228 TATK 231 (235)
Q Consensus 228 ~~~k 231 (235)
+.+|
T Consensus 66 ~i~k 69 (69)
T cd03422 66 LIQK 69 (69)
T ss_pred EEEC
Confidence 5443
No 487
>PRK07806 short chain dehydrogenase; Provisional
Probab=79.06 E-value=26 Score=26.62 Aligned_cols=102 Identities=17% Similarity=0.105 Sum_probs=54.9
Q ss_pred CCeEEEecCCCc--h-HHHHHHHcCCCceEEEEeCCH-HHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC---
Q 026688 62 GGNIIDASCGSG--L-FSRIFAKSGLFSLVVALDYSE-NMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA--- 129 (235)
Q Consensus 62 ~~~vLdiG~G~G--~-~~~~l~~~~~~~~v~~~D~s~-~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--- 129 (235)
++++|-.|+..| . +...+++.+. +|++++.+. ...+.....+... ..++.++..|+.+.. +.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAA----GGRASAVGADLTDEESVAALMDTAR 79 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 568888886443 2 2333444454 788877653 3334333333322 235677888887532 00
Q ss_pred --CCceeEEEecccccccC--C-----------hHHHHHHHHHhccCCcEEEEEE
Q 026688 130 --SSSIDAVHAGAAIHCWS--S-----------PSTGVAEISRVLRPGGVFVGTT 169 (235)
Q Consensus 130 --~~~~D~i~~~~~l~~~~--~-----------~~~~l~~~~~~L~pgG~li~~~ 169 (235)
.+..|+++.+....... + +..+++.+.+.++.+|.+++..
T Consensus 80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 80 EEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred HhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 13578888654321110 0 1256677777766667766654
No 488
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=78.87 E-value=18 Score=27.61 Aligned_cols=75 Identities=15% Similarity=0.168 Sum_probs=46.5
Q ss_pred CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----C-----
Q 026688 62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----- 128 (235)
Q Consensus 62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----- 128 (235)
++++|-.|++.| .++..+++++. .|+.++.+++.++...+.+... ..++.+..+|+.+.. +
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAA----GGAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhc----CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 678888886543 22334444554 8999999887666655555432 235778888886531 0
Q ss_pred CCCceeEEEecccc
Q 026688 129 ASSSIDAVHAGAAI 142 (235)
Q Consensus 129 ~~~~~D~i~~~~~l 142 (235)
.-+..|.++.+...
T Consensus 85 ~~~~id~vi~~ag~ 98 (256)
T PRK06124 85 EHGRLDILVNNVGA 98 (256)
T ss_pred hcCCCCEEEECCCC
Confidence 01457888876543
No 489
>PRK10083 putative oxidoreductase; Provisional
Probab=78.73 E-value=25 Score=28.21 Aligned_cols=102 Identities=14% Similarity=0.032 Sum_probs=55.8
Q ss_pred cCCCCCCeEEEecCCC-chHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccccc-CCCCCCce
Q 026688 57 LKPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASSSI 133 (235)
Q Consensus 57 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~ 133 (235)
....++.+||-.|+|. |..+..+++. .....++++|.+++-.+.+++.-... -+.....++.+ ..-....+
T Consensus 156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~------~i~~~~~~~~~~~~~~g~~~ 229 (339)
T PRK10083 156 TGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADW------VINNAQEPLGEALEEKGIKP 229 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcE------EecCccccHHHHHhcCCCCC
Confidence 3455678999999764 5555666663 12235888999888777776521100 01111111111 11011224
Q ss_pred eEEEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 134 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 134 D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
|+++... .. ...+....+.|+++|.++....
T Consensus 230 d~vid~~-----g~-~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 230 TLIIDAA-----CH-PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred CEEEECC-----CC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 5666322 11 2357888899999999987654
No 490
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=78.69 E-value=21 Score=27.81 Aligned_cols=95 Identities=12% Similarity=0.012 Sum_probs=48.2
Q ss_pred CCCCeEEEecCCCc----hHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCcee
Q 026688 60 VLGGNIIDASCGSG----LFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 134 (235)
Q Consensus 60 ~~~~~vLdiG~G~G----~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 134 (235)
+...+||-+|+|+- --+.-|.+..| ++.++-.|+.+-. ...-..+.+|...... +.++|
T Consensus 60 P~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v---------------SDa~~~~~~Dc~t~~~-~~k~D 123 (299)
T PF06460_consen 60 PHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV---------------SDADQSIVGDCRTYMP-PDKFD 123 (299)
T ss_dssp -TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B----------------SSSEEEES-GGGEEE-SS-EE
T ss_pred ccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc---------------cccCCceeccccccCC-CCccc
Confidence 34789999999863 33455666665 3456677774411 1223456788776543 58899
Q ss_pred EEEeccc---ccccC----ChH----HHHHHHHHhccCCcEEEEEEe
Q 026688 135 AVHAGAA---IHCWS----SPS----TGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 135 ~i~~~~~---l~~~~----~~~----~~l~~~~~~L~pgG~li~~~~ 170 (235)
+|++... ..+.. ..+ -+..-+...|+-||.+.+-..
T Consensus 124 lIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiT 170 (299)
T PF06460_consen 124 LIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKIT 170 (299)
T ss_dssp EEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred EEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEee
Confidence 9998644 11111 112 345556778888999987543
No 491
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=78.67 E-value=17 Score=28.51 Aligned_cols=86 Identities=20% Similarity=0.183 Sum_probs=57.9
Q ss_pred CCCCCeEEEecCCCchHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCCCCCCceeEEEe
Q 026688 59 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 138 (235)
Q Consensus 59 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 138 (235)
..++....|+|+-.|..+..+.+++- .|+++|.-+ |.+.... ...++-...|-.+........|-.+|
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m--~V~aVDng~-ma~sL~d---------tg~v~h~r~DGfk~~P~r~~idWmVC 276 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNM--RVYAVDNGP-MAQSLMD---------TGQVTHLREDGFKFRPTRSNIDWMVC 276 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcce--EEEEeccch-hhhhhhc---------ccceeeeeccCcccccCCCCCceEEe
Confidence 34588999999999999999999875 999999754 3222211 34677777777766434567888887
Q ss_pred cccccccCChHHHHHHHHHhcc
Q 026688 139 GAAIHCWSSPSTGVAEISRVLR 160 (235)
Q Consensus 139 ~~~l~~~~~~~~~l~~~~~~L~ 160 (235)
..+ ..|.++-..+..-|.
T Consensus 277 DmV----EkP~rv~~li~~Wl~ 294 (358)
T COG2933 277 DMV----EKPARVAALIAKWLV 294 (358)
T ss_pred ehh----cCcHHHHHHHHHHHH
Confidence 443 345444444444443
No 492
>PLN02256 arogenate dehydrogenase
Probab=78.58 E-value=22 Score=28.57 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=27.7
Q ss_pred HHHhhcCCCCCCeEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCH
Q 026688 52 LMKGYLKPVLGGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSE 95 (235)
Q Consensus 52 ~i~~~~~~~~~~~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~ 95 (235)
.+.+.++.....+|.-||+|. | .++..+.+.+ .+|+++|.++
T Consensus 26 ~~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G--~~V~~~d~~~ 69 (304)
T PLN02256 26 RLQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQG--HTVLATSRSD 69 (304)
T ss_pred HHhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECcc
Confidence 334445545567899999885 3 3555555544 3899999886
No 493
>PRK07454 short chain dehydrogenase; Provisional
Probab=78.51 E-value=23 Score=26.80 Aligned_cols=74 Identities=16% Similarity=0.116 Sum_probs=46.1
Q ss_pred CCeEEEecCCCchHHH----HHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC-----CC---
Q 026688 62 GGNIIDASCGSGLFSR----IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA--- 129 (235)
Q Consensus 62 ~~~vLdiG~G~G~~~~----~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--- 129 (235)
.+++|-.|+ +|.++. .+++++. .|++++.++...+...+.+... ..++.++.+|+.+.. +.
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGW--DLALVARSQDALEALAAELRST----GVKAAAYSIDLSNPEAIAPGIAELL 78 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhC----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 467888875 444433 4444554 8999999887666555544332 246778888987632 10
Q ss_pred --CCceeEEEecccc
Q 026688 130 --SSSIDAVHAGAAI 142 (235)
Q Consensus 130 --~~~~D~i~~~~~l 142 (235)
.+..|+++.+...
T Consensus 79 ~~~~~id~lv~~ag~ 93 (241)
T PRK07454 79 EQFGCPDVLINNAGM 93 (241)
T ss_pred HHcCCCCEEEECCCc
Confidence 1357999976554
No 494
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=78.36 E-value=34 Score=27.58 Aligned_cols=98 Identities=21% Similarity=0.277 Sum_probs=53.9
Q ss_pred CCCCeEEEecCCC-chHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEeccc---ccCCCCCCceeE
Q 026688 60 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI---SRLPFASSSIDA 135 (235)
Q Consensus 60 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~ 135 (235)
.++.+||-.|+|. |..+..+++......+++++-++.-...+++. ... .-+.....+. .+. ...+.+|+
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~~-----~~~~~~~~~~~~~~~~-~~~~~vd~ 234 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM-GAD-----VVINPREEDVVEVKSV-TDGTGVDV 234 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-Ccc-----eeeCcccccHHHHHHH-cCCCCCCE
Confidence 3567788777754 66666677664322688887777655555432 100 0001111111 111 12356899
Q ss_pred EEecccccccCChHHHHHHHHHhccCCcEEEEEEe
Q 026688 136 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 170 (235)
Q Consensus 136 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~~~ 170 (235)
++.... ....+..+.+.|+++|.++....
T Consensus 235 vld~~g------~~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 235 VLEMSG------NPKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred EEECCC------CHHHHHHHHHHhccCCEEEEEcc
Confidence 884321 12346778899999999886543
No 495
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.33 E-value=20 Score=26.06 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=21.1
Q ss_pred eEEEecCCC-ch-HHHHHHHcCCCceEEEEeCCH
Q 026688 64 NIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSE 95 (235)
Q Consensus 64 ~vLdiG~G~-G~-~~~~l~~~~~~~~v~~~D~s~ 95 (235)
+|+-+|||. |. .+..+++.+. .+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 478899984 54 4556666553 4788888764
No 496
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=78.15 E-value=7.5 Score=30.89 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=42.1
Q ss_pred cCCCchHHHHHHHc----CCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeE----EecccccCC-----CCCCceeE
Q 026688 69 SCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL----VRADISRLP-----FASSSIDA 135 (235)
Q Consensus 69 G~G~G~~~~~l~~~----~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~----~~~d~~~~~-----~~~~~~D~ 135 (235)
-.|.|..+..+.++ .| .+++.+|.++..+-..++.+..... ..++.+ +.+|+.+.. +....+|+
T Consensus 4 TGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~--~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 4 TGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFP--DPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp ETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC----TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred EccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhccc--ccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 34566666666554 43 5899999999999999888754321 234544 477886532 44568999
Q ss_pred EEecccccccC
Q 026688 136 VHAGAAIHCWS 146 (235)
Q Consensus 136 i~~~~~l~~~~ 146 (235)
|+-...+-|++
T Consensus 81 VfHaAA~KhVp 91 (293)
T PF02719_consen 81 VFHAAALKHVP 91 (293)
T ss_dssp EEE------HH
T ss_pred EEEChhcCCCC
Confidence 99988888764
No 497
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=78.14 E-value=48 Score=29.28 Aligned_cols=80 Identities=19% Similarity=0.105 Sum_probs=45.2
Q ss_pred CCCCeEEEecCCCchHHHH----HHHcCCCceEEEEeCCHHHHHHHHHHhhhc-----CCCCCCCeeEEecccccCC-C-
Q 026688 60 VLGGNIIDASCGSGLFSRI----FAKSGLFSLVVALDYSENMLKQCYEFVQQE-----SNFPKENFLLVRADISRLP-F- 128 (235)
Q Consensus 60 ~~~~~vLdiG~G~G~~~~~----l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~~d~~~~~-~- 128 (235)
..+++||-.|+ +|.++.. |++.+. .|++++.+...++...+.+... +.....++.++.+|+.+.. +
T Consensus 78 ~~gKvVLVTGA-TGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 78 KDEDLAFVAGA-TGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 34567777666 3444444 444444 8999998877665544333211 1000135788889997632 1
Q ss_pred -CCCceeEEEecccc
Q 026688 129 -ASSSIDAVHAGAAI 142 (235)
Q Consensus 129 -~~~~~D~i~~~~~l 142 (235)
.-+..|+||++...
T Consensus 155 ~aLggiDiVVn~AG~ 169 (576)
T PLN03209 155 PALGNASVVICCIGA 169 (576)
T ss_pred HHhcCCCEEEEcccc
Confidence 12468998876543
No 498
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=78.10 E-value=13 Score=29.86 Aligned_cols=96 Identities=15% Similarity=0.198 Sum_probs=52.3
Q ss_pred eEEEecCCC-c-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCC----CCeeEEecccccCCCCCCceeEEE
Q 026688 64 NIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK----ENFLLVRADISRLPFASSSIDAVH 137 (235)
Q Consensus 64 ~vLdiG~G~-G-~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~D~i~ 137 (235)
+|.-+|+|. | .++..+++.+. .|+.+|.++..++..++.-........ .++.. ..|..+. ....|+|+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~D~vi 76 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEA---LADADLIL 76 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHH---HhCCCEEE
Confidence 688888885 3 45556666655 799999998877766553110000000 01111 1222111 13568888
Q ss_pred ecccccccCChHHHHHHHHHhccCCcEEEEE
Q 026688 138 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 168 (235)
Q Consensus 138 ~~~~l~~~~~~~~~l~~~~~~L~pgG~li~~ 168 (235)
..---. ....++..+...++++..++..
T Consensus 77 ~~v~~~---~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 77 VAVPSQ---ALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred EeCCHH---HHHHHHHHHHhhcCCCCEEEEE
Confidence 644332 2346677788888887655544
No 499
>PRK06500 short chain dehydrogenase; Provisional
Probab=78.08 E-value=27 Score=26.41 Aligned_cols=72 Identities=25% Similarity=0.289 Sum_probs=42.0
Q ss_pred CCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------C--
Q 026688 62 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------F-- 128 (235)
Q Consensus 62 ~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~-- 128 (235)
++++|-.|++.| .++..+++++. .|++++.++..++...+.+ ..++.+...|+.+.. .
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAEL-------GESALVIRADAGDVAAQKALAQALAE 76 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHh-------CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 467777776543 23334555554 8999998876555444332 224666777775421 0
Q ss_pred CCCceeEEEecccc
Q 026688 129 ASSSIDAVHAGAAI 142 (235)
Q Consensus 129 ~~~~~D~i~~~~~l 142 (235)
..+..|+++.+...
T Consensus 77 ~~~~id~vi~~ag~ 90 (249)
T PRK06500 77 AFGRLDAVFINAGV 90 (249)
T ss_pred HhCCCCEEEECCCC
Confidence 01467998866543
No 500
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=78.05 E-value=31 Score=27.05 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=58.5
Q ss_pred CCCeEEEecCCCc---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHhhhcCCCCCCCeeEEecccccCC--------CC
Q 026688 61 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FA 129 (235)
Q Consensus 61 ~~~~vLdiG~G~G---~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~ 129 (235)
..+++|--|+-+| .++..+++++. .++.+--+.+-++...+.+.... ...+.++..|+.+.. ..
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~---~v~v~vi~~DLs~~~~~~~l~~~l~ 79 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT---GVEVEVIPADLSDPEALERLEDELK 79 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh---CceEEEEECcCCChhHHHHHHHHHH
Confidence 3578888888666 45666777766 89999999998888888776543 346888999987643 11
Q ss_pred C--CceeEEEecccccccC
Q 026688 130 S--SSIDAVHAGAAIHCWS 146 (235)
Q Consensus 130 ~--~~~D~i~~~~~l~~~~ 146 (235)
. ...|+.+.+..+.+..
T Consensus 80 ~~~~~IdvLVNNAG~g~~g 98 (265)
T COG0300 80 ERGGPIDVLVNNAGFGTFG 98 (265)
T ss_pred hcCCcccEEEECCCcCCcc
Confidence 1 3799999887765543
Done!