BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026689
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E2N|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In The
Apo Form
pdb|2E2N|B Chain B, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In The
Apo Form
pdb|2E2O|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Glucose
pdb|2E2P|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Adp
pdb|2E2P|B Chain B, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Adp
pdb|2E2Q|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Xylose, Mg2+, And Adp
pdb|2E2Q|B Chain B, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Xylose, Mg2+, And Adp
Length = 299
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 20/203 (9%)
Query: 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMA 82
+I+G+D G T T + + ++G N+++VG A E I++ +
Sbjct: 3 IIVGVDAGGTKTKAVAYDCEG---------NFIGEGSSGPGNYHNVGLTRAIENIKEAVK 53
Query: 83 DALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT 142
A + V + V+G++ D + I P ++ + +D + AL + T
Sbjct: 54 IA------AKGEADVVGMGVAGLDSKFDWENFTPLASLIAP---KVIIQHDGVIALFAET 104
Query: 143 MGKLHGCVLIAGTGTIAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQALTAVIRAYDGR 202
+G+ G V+IAGTG++ G+ +L D GS Y + +AL V++ DG
Sbjct: 105 LGE-PGVVVIAGTGSVVEGYN-GKEFLRVGGRGWLLSDDGSAYWVGRKALRKVLKMMDGL 162
Query: 203 GPDTMLTSNILSTLELSSPDELI 225
T+L + +L T+ + DEL+
Sbjct: 163 ENKTILYNKVLKTINVKDLDELV 185
>pdb|2CH6|A Chain A, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
pdb|2CH6|B Chain B, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
pdb|2CH6|C Chain C, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
pdb|2CH6|D Chain D, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
Length = 344
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 4/149 (2%)
Query: 54 VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSN-RSAVRAVCLAVSGVNHPTDQQ 112
+LA A +NH +G D E I +++ A K+G + +R++ L++SG + +
Sbjct: 26 ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGR 85
Query: 113 RILNWLRDIFPGNVRLY-VHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXX 171
++ LRD FP Y + DA ++A+ T G VLI+GTG+
Sbjct: 86 ILIEELRDRFPYLSESYLITTDAAGSIATATPDG--GVVLISGTGSNCRLINPDGSESGC 143
Query: 172 XXXXPILGDWGSGYGIAAQALTAVIRAYD 200
++GD GS Y IA QA+ V + D
Sbjct: 144 GGWGHMMGDEGSAYWIAHQAVKIVFDSID 172
>pdb|2CH5|A Chain A, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
pdb|2CH5|B Chain B, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
pdb|2CH5|C Chain C, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
pdb|2CH5|D Chain D, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
Length = 347
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 4/149 (2%)
Query: 54 VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNR-SAVRAVCLAVSGVNHPTDQQ 112
+LA A +NH +G D E I +++ A K+G + +R++ L++SG + +
Sbjct: 29 ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGR 88
Query: 113 RILNWLRDIFPGNVRLY-VHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXX 171
++ LRD FP Y + DA ++A+ T G VLI+GTG+
Sbjct: 89 ILIEELRDRFPYLSESYLITTDAAGSIATATPDG--GVVLISGTGSNCRLINPDGSESGC 146
Query: 172 XXXXPILGDWGSGYGIAAQALTAVIRAYD 200
++GD GS Y IA QA+ V + D
Sbjct: 147 GGWGHMMGDEGSAYWIAHQAVKIVFDSID 175
>pdb|2JL4|A Chain A, Holo Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-S-Transferase In Zeta Class
pdb|2JL4|B Chain B, Holo Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-S-Transferase In Zeta Class
Length = 213
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 78 EKVMADALLKSGSN-RSAVRAVCLAVSGVNHPTDQQRILNWLRDIF 122
E+ ALL + ++ R VRA+ V HP + +RIL +LR F
Sbjct: 75 EQYPTPALLPADADGRQRVRALAAIVGCDIHPINNRRILEYLRKTF 120
>pdb|2V6K|A Chain A, Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-s-transferase In Zeta Class, In Complex With
Substrate Analogue Dicarboxyethyl Glutathione
pdb|2V6K|B Chain B, Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-s-transferase In Zeta Class, In Complex With
Substrate Analogue Dicarboxyethyl Glutathione
Length = 214
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 78 EKVMADALLKSGSN-RSAVRAVCLAVSGVNHPTDQQRILNWLRDIF 122
E+ ALL + ++ R VRA+ V HP + +RIL +LR F
Sbjct: 76 EQYPTPALLPADADGRQRVRALAAIVGCDIHPINNRRILEYLRKTF 121
>pdb|2G0F|A Chain A, Crystal Structure Of P144a Mutant Of E.Coli Ccmg Protein
Length = 168
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 93 SAVRAVCLAVSGVNHPTDQQRILNWLRDI-FPGNVRLYVHNDALAALASGTMGKLHGCVL 151
+ + A + V G+N+ D+Q+ ++WL+++ P + L+ D + L G G L
Sbjct: 74 NQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLF-DGDGMLGLDLGVYGAAE-TFL 131
Query: 152 IAGTGTIAY 160
I G G I Y
Sbjct: 132 IDGNGIIRY 140
>pdb|1Z5Y|E Chain E, Crystal Structure Of The Disulfide-linked Complex Between
The N-terminal Domain Of The Electron Transfer Catalyst
Dsbd And The Cytochrome C Biogenesis Protein Ccmg
Length = 149
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 93 SAVRAVCLAVSGVNHPTDQQRILNWLRDI-FPGNVRLYVHNDALAALASGTMGKLHGCVL 151
+ + A + V G+N+ D+Q+ ++WL+++ P + L+ D + L G G L
Sbjct: 49 NQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLF-DGDGMLGLDLGVYGAPE-TFL 106
Query: 152 IAGTGTIAY 160
I G G I Y
Sbjct: 107 IDGNGIIRY 115
>pdb|2B1K|A Chain A, Crystal Structure Of E. Coli Ccmg Protein
Length = 168
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 93 SAVRAVCLAVSGVNHPTDQQRILNWLRDI-FPGNVRLYVHNDALAALASGTMGKLHGCVL 151
+ + A + V G+N+ D+Q+ ++WL+++ P + L+ D + L G G L
Sbjct: 74 NQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLF-DGDGMLGLDLGVYGAPE-TFL 131
Query: 152 IAGTGTIAY 160
I G G I Y
Sbjct: 132 IDGNGIIRY 140
>pdb|3K8N|A Chain A, Crystal Structure Of E. Coli Ccmg
Length = 185
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 93 SAVRAVCLAVSGVNHPTDQQRILNWLRDI-FPGNVRLYVHNDALAALASGTMGKLHGCVL 151
+ + A + V G+N+ D+Q+ ++WL+++ P + L+ D + L G G L
Sbjct: 91 NQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLF-DGDGMLGLDLGVYGAPE-TFL 148
Query: 152 IAGTGTIAY 160
I G G I Y
Sbjct: 149 IDGNGIIRY 157
>pdb|2B1L|A Chain A, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
pdb|2B1L|B Chain B, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
Length = 129
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 93 SAVRAVCLAVSGVNHPTDQQRILNWLRDI-FPGNVRLYVHNDALAALASGTMGKLHGCVL 151
+ + A + V G+N+ D+Q+ ++WL+++ P + L+ D + L G G L
Sbjct: 35 NQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLF-DGDGMLGLDLGVYGAPE-TFL 92
Query: 152 IAGTGTIAY 160
I G G I Y
Sbjct: 93 IDGNGIIRY 101
>pdb|2FIQ|A Chain A, Crystal Structure Of Putative Tagatose 6-Phosphate Kinase
pdb|2FIQ|B Chain B, Crystal Structure Of Putative Tagatose 6-Phosphate Kinase
pdb|2FIQ|C Chain C, Crystal Structure Of Putative Tagatose 6-Phosphate Kinase
pdb|2FIQ|D Chain D, Crystal Structure Of Putative Tagatose 6-Phosphate Kinase
Length = 420
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 50 DPLP-----VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98
DP+P V RAA C SV D RE + V+ + G SA+++V
Sbjct: 132 DPIPLAPETVAERAAVLCFAAESVATDCQREQLSYVIGTEVPVPGGEASAIQSV 185
>pdb|4HJY|A Chain A, 2.4 A Crystal Structure Of E. Coli Mlte-E64q With Bound
Chitopentaose
pdb|4HJY|B Chain B, 2.4 A Crystal Structure Of E. Coli Mlte-E64q With Bound
Chitopentaose
pdb|4HJZ|A Chain A, 1.9 A Crystal Structure Of E. Coli Mlte-E64q With Bound
Chitopentaose
pdb|4HJZ|B Chain B, 1.9 A Crystal Structure Of E. Coli Mlte-E64q With Bound
Chitopentaose
Length = 206
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 176 PILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSS 220
PI G+ +G+ Q +TA+I G P+ + SN + ++L +
Sbjct: 44 PISQKAGAAWGVDPQLITAIIAIQSGGNPNAVSKSNAIGLMQLKA 88
>pdb|3T36|A Chain A, Crystal Structure Of Lytic Transglycosylase Mlte From
Eschericha Coli
pdb|3T36|B Chain B, Crystal Structure Of Lytic Transglycosylase Mlte From
Eschericha Coli
pdb|3T36|C Chain C, Crystal Structure Of Lytic Transglycosylase Mlte From
Eschericha Coli
pdb|3T36|D Chain D, Crystal Structure Of Lytic Transglycosylase Mlte From
Eschericha Coli
pdb|3T36|E Chain E, Crystal Structure Of Lytic Transglycosylase Mlte From
Eschericha Coli
pdb|4HJV|A Chain A, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
Murodipeptide
pdb|4HJV|B Chain B, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
Murodipeptide
pdb|4HJV|C Chain C, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
Murodipeptide
pdb|4HJV|D Chain D, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
Murodipeptide
pdb|4HJV|E Chain E, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
Murodipeptide
Length = 203
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 176 PILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSS 220
PI G+ +G+ Q +TA+I G P+ + SN + ++L +
Sbjct: 41 PISQKAGAAWGVDPQLITAIIAIESGGNPNAVSKSNAIGLMQLKA 85
>pdb|2Y8P|A Chain A, Crystal Structure Of An Outer Membrane-Anchored Endolytic
Peptidoglycan Lytic Transglycosylase (Mlte) From
Escherichia Coli
pdb|2Y8P|B Chain B, Crystal Structure Of An Outer Membrane-Anchored Endolytic
Peptidoglycan Lytic Transglycosylase (Mlte) From
Escherichia Coli
Length = 194
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 176 PILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSS 220
PI G+ +G+ Q +TA+I G P+ + SN + ++L +
Sbjct: 24 PISQKAGAAWGVDPQLITAIIAIESGGNPNAVSKSNAIGLMQLKA 68
>pdb|3OQP|A Chain A, Crystal Structure Of A Putative Isochorismatase
(Bxe_a0706) From Burkholderia Xenovorans Lb400 At 1.22
A Resolution
pdb|3OQP|B Chain B, Crystal Structure Of A Putative Isochorismatase
(Bxe_a0706) From Burkholderia Xenovorans Lb400 At 1.22
A Resolution
Length = 211
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 39 MPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADAL 85
+PV+ + + P P+ AR + G H V E A +EK + A
Sbjct: 49 VPVVIVQNFAPAGSPLFARGSNGAELHPVVSERARDHYVEKSLPSAF 95
>pdb|1XD5|A Chain A, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|B Chain B, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|C Chain C, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|D Chain D, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
Length = 112
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 121 IFPGNVRLYVHNDALAALASGTMGKLHGCVL 151
I + L ++++ A ASGT GK GCVL
Sbjct: 24 IIQNDCNLVLYDNNRAVWASGTNGKASGCVL 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,759,416
Number of Sequences: 62578
Number of extensions: 252241
Number of successful extensions: 577
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 18
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)