BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026689
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54PM7|NAGK_DICDI N-acetyl-D-glucosamine kinase OS=Dictyostelium discoideum GN=nagk
PE=3 SV=2
Length = 319
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 120/214 (56%), Gaps = 16/214 (7%)
Query: 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIE-- 78
+E+ +G+DGG T T + + LAR + CSN++SVGED A+ I
Sbjct: 3 KEIFIGIDGGGTKTSTVAVDSNGQE---------LARHTSPCSNYHSVGEDLAKAAINEG 53
Query: 79 -----KVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHND 133
+ + + + + V ++CL +SGV+ D+ + +W+ ++ ++ +HND
Sbjct: 54 IKYVIRKVKETITDDDNKEVTVGSICLGMSGVDREKDKLLVKSWVTELLGESINYSIHND 113
Query: 134 ALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALT 193
A+ AL+SGT GKL G V+I GTG I+ GF +G R+ G GP+LGD+GSGY I L
Sbjct: 114 AIVALSSGTQGKLFGVVIICGTGCISLGFNREGVSGRSGGWGPLLGDYGSGYQIGYDILR 173
Query: 194 AVIRAYDGRGPDTMLTSNILSTLELSSPDELIGY 227
V++A D GP T LT +L L+L+ ++LI +
Sbjct: 174 HVLKAKDQVGPKTSLTQVLLEKLQLTKEEDLISW 207
>sp|Q3SZM9|NAGK_BOVIN N-acetyl-D-glucosamine kinase OS=Bos taurus GN=NAGK PE=2 SV=1
Length = 344
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 14/174 (8%)
Query: 29 GGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKS 88
GGT S V + L + +LA A +NH +G D E I +++ A K+
Sbjct: 11 GGTRSKVLL----------LSEDGQILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKA 60
Query: 89 GSN-RSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLY-VHNDALAALASGTMGKL 146
G + +R + L++SG + + ++ LRD FP Y + DA ++A+ T
Sbjct: 61 GVDPLVPLRGLGLSLSGGDQEDAVRMLMEELRDRFPYLSESYLITTDAAGSIATATPDG- 119
Query: 147 HGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYD 200
G VLI+GTG+ DG ++ G G ++GD GS Y IA QA+ V + D
Sbjct: 120 -GVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSID 172
>sp|Q9UJ70|NAGK_HUMAN N-acetyl-D-glucosamine kinase OS=Homo sapiens GN=NAGK PE=1 SV=4
Length = 344
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
Query: 54 VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSN-RSAVRAVCLAVSGVNHPTDQQ 112
+LA A +NH +G D E I +++ A K+G + +R++ L++SG + +
Sbjct: 26 ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGR 85
Query: 113 RILNWLRDIFPGNVRLY-VHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARA 171
++ LRD FP Y + DA ++A+ T G VLI+GTG+ DG ++
Sbjct: 86 ILIEELRDRFPYLSESYLITTDAAGSIATATPDG--GVVLISGTGSNCRLINPDGSESGC 143
Query: 172 AGAGPILGDWGSGYGIAAQALTAVIRAYD 200
G G ++GD GS Y IA QA+ V + D
Sbjct: 144 GGWGHMMGDEGSAYWIAHQAVKIVFDSID 172
>sp|Q9QZ08|NAGK_MOUSE N-acetyl-D-glucosamine kinase OS=Mus musculus GN=Nagk PE=2 SV=3
Length = 343
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 29 GGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKS 88
GGT S V + L + +LA A +NH +G D E I +++ A K+
Sbjct: 11 GGTRSKVLL----------LSEDGQILAEADGLSTNHWLIGTDQCVERINEMVDRAKQKA 60
Query: 89 GSN-RSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLY-VHNDALAALASGTMGKL 146
G + +R++ L++SG + ++ LR FP Y + DA ++A+ T
Sbjct: 61 GVDPLVPLRSLGLSLSGGEQEDAVRLLIEELRHRFPNLSENYLITTDAAGSIATATPDG- 119
Query: 147 HGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYD 200
G VLI+GTG+ DG ++ G G ++GD GS Y IA QA+ V + D
Sbjct: 120 -GIVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSID 172
>sp|P81799|NAGK_RAT N-acetyl-D-glucosamine kinase OS=Rattus norvegicus GN=Nagk PE=1
SV=4
Length = 343
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 14/174 (8%)
Query: 29 GGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKS 88
GGT S V + L + +LA A +NH +G E I +++ A K+
Sbjct: 11 GGTRSKVLL----------LSEDGQILAEADGLSTNHWLIGTGTCVERINEMVDRAKRKA 60
Query: 89 GSN-RSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPG-NVRLYVHNDALAALASGTMGKL 146
G + +R++ L++SG + ++ LRD FP + ++ DA ++A+ T
Sbjct: 61 GVDPLVPLRSLGLSLSGGEQEDAVRLLMEELRDRFPYLSESYFITTDAAGSIATATPDG- 119
Query: 147 HGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYD 200
G VLI+GTG+ DG ++ G G ++GD GS Y IA QA+ V + D
Sbjct: 120 -GIVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSID 172
>sp|A5GS43|RLMH_SYNR3 Ribosomal RNA large subunit methyltransferase H OS=Synechococcus
sp. (strain RCC307) GN=rlmH PE=3 SV=1
Length = 147
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 162 FTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTL-ELSS 220
+E+GR + G +LG W A++ L VI DG P +++L +L EL+
Sbjct: 66 LSEEGRQLSSVGLAELLGGW------ASERLALVIGGADGHDPTLKQQADVLLSLSELTF 119
Query: 221 PDELIGYMI 229
P EL M+
Sbjct: 120 PHELARLML 128
>sp|P32521|PAN1_YEAST Actin cytoskeleton-regulatory complex protein PAN1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PAN1 PE=1 SV=2
Length = 1480
Score = 31.2 bits (69), Expect = 7.1, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 8 EIWDFETAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNS 67
E W+F E G RE + L + +V P + S P PV R+++ +
Sbjct: 955 ERWEFGIGLEDGVREFLDDLKSNSNKSVTESSPFVPSS----TPTPVDDRSSSPSYSQFK 1010
Query: 68 VGEDAA---RETIEKVMADALLKSGSNRSAV 95
E+ A +E +K M + L K NR V
Sbjct: 1011 TAEERAAYLKEQAKKRMKEKLAKFDKNRRNV 1041
>sp|A6ZVS5|PAN1_YEAS7 Actin cytoskeleton-regulatory complex protein PAN1 OS=Saccharomyces
cerevisiae (strain YJM789) GN=PAN1 PE=3 SV=2
Length = 1460
Score = 31.2 bits (69), Expect = 7.1, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 8 EIWDFETAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNS 67
E W+F E G RE + L + +V P + S P PV R+++ +
Sbjct: 947 ERWEFGIGLEDGVREFLDDLKSNSNKSVTESSPFVPSS----TPTPVDDRSSSPSYSQFK 1002
Query: 68 VGEDAA---RETIEKVMADALLKSGSNRSAV 95
E+ A +E +K M + L K NR V
Sbjct: 1003 TAEERAAYLKEQAKKRMKEKLAKFDKNRRNV 1033
>sp|A6TQC4|NADE_ALKMQ NH(3)-dependent NAD(+) synthetase OS=Alkaliphilus metalliredigens
(strain QYMF) GN=nadE PE=3 SV=1
Length = 247
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 10 WDFETAEESGGREVILGLDGGTTSTVC--------------ICMPVISMSDSLPDPLPVL 55
W E EESG +++G+ GG S V + +P+ S D + D L V
Sbjct: 13 WLREQVEESGTTGLVVGISGGIDSAVVANLIYRAFPNQSLGVILPIRSHQDDIDDGLAV- 71
Query: 56 ARAAAGCSNHNSVGEDAARETIEKVMADALLK 87
A A H +V D E + +AL K
Sbjct: 72 --AIACGIKHTTVNLDNEHENVLSKAINALQK 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,328,042
Number of Sequences: 539616
Number of extensions: 3782752
Number of successful extensions: 10437
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 10428
Number of HSP's gapped (non-prelim): 18
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)