Query 026689
Match_columns 235
No_of_seqs 206 out of 1808
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 11:20:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2971 Predicted N-acetylgluc 100.0 6.8E-38 1.5E-42 273.1 23.4 197 20-231 3-200 (301)
2 KOG1794 N-Acetylglucosamine ki 100.0 7.4E-37 1.6E-41 263.2 19.4 204 20-232 1-210 (336)
3 PF01869 BcrAD_BadFG: BadF/Bad 100.0 1.7E-29 3.6E-34 220.9 16.6 167 25-207 1-167 (271)
4 COG1940 NagC Transcriptional r 99.8 3.8E-19 8.2E-24 158.4 19.3 147 20-181 4-172 (314)
5 PRK09698 D-allose kinase; Prov 99.8 8.7E-19 1.9E-23 155.3 17.6 142 19-178 1-166 (302)
6 TIGR00744 ROK_glcA_fam ROK fam 99.8 1.1E-18 2.5E-23 155.3 17.5 139 25-179 1-161 (318)
7 PRK13311 N-acetyl-D-glucosamin 99.8 3.4E-18 7.5E-23 148.5 18.7 137 23-178 1-159 (256)
8 PRK09557 fructokinase; Reviewe 99.8 3.7E-18 8E-23 151.3 18.8 137 23-178 1-159 (301)
9 PRK13310 N-acetyl-D-glucosamin 99.8 2.6E-18 5.7E-23 152.3 15.6 137 24-179 2-160 (303)
10 PF00480 ROK: ROK family; Int 99.7 1.2E-17 2.7E-22 136.7 10.8 135 26-181 1-157 (179)
11 PRK12408 glucokinase; Provisio 99.7 2.6E-17 5.6E-22 148.6 13.8 139 13-178 9-180 (336)
12 PRK05082 N-acetylmannosamine k 99.7 6.6E-17 1.4E-21 142.6 15.7 136 24-180 3-160 (291)
13 PRK00292 glk glucokinase; Prov 99.7 4.9E-16 1.1E-20 138.8 18.9 135 22-179 2-163 (316)
14 PRK14101 bifunctional glucokin 99.6 8E-15 1.7E-19 142.5 12.4 135 22-178 18-177 (638)
15 TIGR00749 glk glucokinase, pro 99.6 4E-14 8.6E-19 126.6 14.2 134 25-178 1-162 (316)
16 smart00732 YqgFc Likely ribonu 99.2 6.8E-11 1.5E-15 87.7 8.7 93 23-139 2-98 (99)
17 PTZ00288 glucokinase 1; Provis 99.0 2.7E-09 5.8E-14 98.6 12.4 145 22-179 26-221 (405)
18 PF02685 Glucokinase: Glucokin 98.9 2.1E-09 4.7E-14 96.4 8.0 135 25-177 1-161 (316)
19 PRK00047 glpK glycerol kinase; 98.8 2.4E-08 5.2E-13 94.6 9.9 75 20-103 3-83 (498)
20 PF00370 FGGY_N: FGGY family o 98.8 3.7E-08 8.1E-13 84.7 9.8 73 23-104 1-79 (245)
21 PRK10939 autoinducer-2 (AI-2) 98.8 3.4E-08 7.3E-13 94.1 10.4 74 20-102 1-82 (520)
22 PRK04123 ribulokinase; Provisi 98.8 3.5E-08 7.5E-13 94.6 10.0 74 20-102 1-87 (548)
23 TIGR02707 butyr_kinase butyrat 98.7 2.6E-07 5.7E-12 84.1 14.4 133 24-170 2-197 (351)
24 COG1070 XylB Sugar (pentulose 98.7 6.8E-08 1.5E-12 91.8 10.2 76 20-106 2-84 (502)
25 COG0554 GlpK Glycerol kinase [ 98.7 4.6E-08 9.9E-13 90.7 7.8 74 21-105 4-83 (499)
26 PRK13318 pantothenate kinase; 98.7 2.1E-06 4.5E-11 74.9 17.6 123 24-168 2-146 (258)
27 TIGR01234 L-ribulokinase L-rib 98.7 1E-07 2.2E-12 91.2 9.5 71 23-102 2-90 (536)
28 PTZ00294 glycerol kinase-like 98.7 1.3E-07 2.7E-12 89.9 10.0 73 22-103 2-82 (504)
29 COG0837 Glk Glucokinase [Carbo 98.6 8.3E-07 1.8E-11 78.2 13.2 137 21-177 5-165 (320)
30 TIGR01311 glycerol_kin glycero 98.6 1.8E-07 4E-12 88.5 9.8 74 22-104 1-80 (493)
31 PLN02295 glycerol kinase 98.6 1.8E-07 3.9E-12 89.1 9.3 72 23-105 1-82 (512)
32 PLN02362 hexokinase 98.6 4.7E-06 1E-10 79.2 18.7 134 22-162 95-260 (509)
33 PLN02914 hexokinase 98.6 4.6E-06 9.9E-11 78.8 18.5 169 22-198 95-333 (490)
34 PLN02405 hexokinase 98.6 7.6E-06 1.6E-10 77.6 19.8 134 22-162 95-260 (497)
35 TIGR01312 XylB D-xylulose kina 98.6 8.4E-08 1.8E-12 90.1 6.3 73 25-106 1-81 (481)
36 TIGR01315 5C_CHO_kinase FGGY-f 98.6 2.6E-07 5.5E-12 88.6 9.5 71 23-102 1-77 (541)
37 PTZ00107 hexokinase; Provision 98.6 1.9E-05 4E-10 74.4 21.1 171 22-201 74-322 (464)
38 PRK13321 pantothenate kinase; 98.5 4.1E-06 8.9E-11 73.0 14.8 147 24-197 2-167 (256)
39 PRK10331 L-fuculokinase; Provi 98.5 5.8E-07 1.3E-11 84.6 10.1 70 22-102 2-79 (470)
40 COG1069 AraB Ribulose kinase [ 98.5 2.8E-07 6.1E-12 86.6 7.6 76 20-103 1-82 (544)
41 TIGR02628 fuculo_kin_coli L-fu 98.5 7.9E-07 1.7E-11 83.6 9.8 69 23-102 2-78 (465)
42 PRK15027 xylulokinase; Provisi 98.4 8.8E-07 1.9E-11 83.7 9.3 68 23-101 1-74 (484)
43 TIGR01314 gntK_FGGY gluconate 98.4 1.1E-06 2.4E-11 83.4 9.8 72 23-104 1-78 (505)
44 PLN02669 xylulokinase 98.3 3E-06 6.5E-11 81.6 9.8 106 21-139 7-146 (556)
45 PLN02596 hexokinase-like 98.3 7.7E-05 1.7E-09 70.6 18.9 134 22-162 96-260 (490)
46 PRK03011 butyrate kinase; Prov 98.2 2E-05 4.2E-10 72.1 12.6 131 23-170 3-199 (358)
47 COG5026 Hexokinase [Carbohydra 98.1 0.00012 2.6E-09 67.5 14.0 135 22-164 75-238 (466)
48 KOG2517 Ribulose kinase and re 97.9 3.9E-05 8.5E-10 72.5 8.7 78 21-106 5-89 (516)
49 PRK15080 ethanolamine utilizat 97.9 0.0016 3.5E-08 57.1 17.9 135 21-171 23-160 (267)
50 TIGR00241 CoA_E_activ CoA-subs 97.8 5.7E-05 1.2E-09 65.4 6.4 65 23-107 1-65 (248)
51 TIGR02529 EutJ ethanolamine ut 97.6 0.0047 1E-07 53.3 15.6 129 26-170 1-132 (239)
52 PF05378 Hydant_A_N: Hydantoin 97.5 0.00025 5.4E-09 58.5 6.7 63 25-102 2-64 (176)
53 PF00349 Hexokinase_1: Hexokin 97.5 0.0011 2.4E-08 56.1 9.7 113 22-141 63-202 (206)
54 KOG1369 Hexokinase [Carbohydra 97.4 0.0026 5.6E-08 59.9 12.9 135 22-163 86-248 (474)
55 TIGR02259 benz_CoA_red_A benzo 97.0 0.0016 3.6E-08 59.9 6.8 36 21-65 1-37 (432)
56 TIGR02627 rhamnulo_kin rhamnul 97.0 0.0015 3.3E-08 61.3 6.3 69 25-105 1-76 (454)
57 PRK13320 pantothenate kinase; 97.0 0.11 2.4E-06 45.1 17.2 140 23-199 3-159 (244)
58 PRK09472 ftsA cell division pr 96.8 0.0093 2E-07 55.6 10.0 76 22-105 8-86 (420)
59 PRK13324 pantothenate kinase; 96.8 0.1 2.2E-06 45.7 15.8 145 24-195 2-165 (258)
60 smart00842 FtsA Cell division 96.8 0.0076 1.6E-07 49.8 8.3 75 24-106 1-78 (187)
61 TIGR03192 benz_CoA_bzdQ benzoy 96.8 0.0098 2.1E-07 52.9 9.3 65 23-106 33-97 (293)
62 PRK13317 pantothenate kinase; 96.7 0.027 5.9E-07 49.8 11.6 115 22-174 2-123 (277)
63 TIGR02261 benz_CoA_red_D benzo 96.5 0.016 3.5E-07 50.8 8.9 67 23-106 2-71 (262)
64 TIGR03286 methan_mark_15 putat 96.5 0.011 2.3E-07 54.8 8.0 65 22-106 144-208 (404)
65 COG1924 Activator of 2-hydroxy 96.3 0.17 3.6E-06 46.5 14.1 65 22-106 135-199 (396)
66 PRK13326 pantothenate kinase; 96.3 0.21 4.4E-06 43.9 14.2 120 22-167 6-147 (262)
67 TIGR00671 baf pantothenate kin 96.2 0.42 9.1E-06 41.4 15.9 141 25-199 2-161 (243)
68 TIGR01174 ftsA cell division p 96.2 0.028 6.2E-07 51.3 9.0 75 23-105 1-78 (371)
69 TIGR00329 gcp_kae1 metallohydr 96.2 0.33 7.1E-06 43.4 15.5 136 25-172 1-152 (305)
70 PRK09604 UGMP family protein; 96.0 0.59 1.3E-05 42.3 16.6 138 23-172 2-154 (332)
71 PRK10854 exopolyphosphatase; P 96.0 0.3 6.4E-06 46.9 15.3 136 22-167 11-158 (513)
72 PF14574 DUF4445: Domain of un 96.0 0.028 6E-07 52.4 7.8 70 23-100 2-89 (412)
73 PRK13322 pantothenate kinase; 95.6 0.25 5.5E-06 42.8 12.0 116 24-167 2-137 (246)
74 TIGR03706 exo_poly_only exopol 95.6 0.45 9.7E-06 42.3 13.8 136 24-169 2-148 (300)
75 PRK13331 pantothenate kinase; 95.5 0.81 1.8E-05 39.9 14.7 138 23-199 8-158 (251)
76 TIGR00555 panK_eukar pantothen 95.5 0.33 7.2E-06 43.0 12.3 119 24-174 2-128 (279)
77 PRK00109 Holliday junction res 95.4 0.19 4E-06 39.8 9.5 93 23-139 5-103 (138)
78 TIGR03123 one_C_unchar_1 proba 95.2 0.1 2.2E-06 47.0 8.2 126 25-171 1-153 (318)
79 PRK11031 guanosine pentaphosph 95.1 0.98 2.1E-05 43.2 15.0 138 22-169 6-155 (496)
80 COG0849 ftsA Cell division ATP 95.0 0.15 3.3E-06 47.6 8.9 73 23-105 7-84 (418)
81 PLN02666 5-oxoprolinase 95.0 0.12 2.6E-06 54.6 9.0 72 22-103 9-85 (1275)
82 PF13941 MutL: MutL protein 94.5 0.17 3.6E-06 47.9 8.1 57 24-90 2-58 (457)
83 COG0816 Predicted endonuclease 94.4 0.4 8.6E-06 38.2 8.8 91 23-137 3-100 (141)
84 PRK09605 bifunctional UGMP fam 94.2 3.7 8.1E-05 39.3 16.8 136 23-171 2-148 (535)
85 PF03652 UPF0081: Uncharacteri 94.2 0.17 3.7E-06 39.9 6.3 91 23-137 2-99 (135)
86 COG0145 HyuA N-methylhydantoin 94.1 0.2 4.4E-06 49.6 8.0 50 22-83 2-51 (674)
87 COG1521 Pantothenate kinase ty 94.0 3.8 8.2E-05 35.8 15.6 142 24-196 2-164 (251)
88 smart00268 ACTIN Actin. ACTIN 93.9 1.4 3E-05 40.0 12.6 92 74-169 74-166 (373)
89 PRK13328 pantothenate kinase; 93.7 1.8 3.9E-05 37.8 12.4 115 24-167 3-139 (255)
90 COG4820 EutJ Ethanolamine util 93.7 0.47 1E-05 40.3 8.3 131 22-170 29-164 (277)
91 TIGR00250 RNAse_H_YqgF RNAse H 93.7 0.53 1.1E-05 36.8 8.2 91 25-139 1-97 (130)
92 PF14450 FtsA: Cell division p 93.5 0.092 2E-06 40.3 3.7 95 24-132 1-98 (120)
93 TIGR03722 arch_KAE1 universal 93.5 3.9 8.5E-05 36.7 14.7 99 25-134 1-106 (322)
94 cd00012 ACTIN Actin; An ubiqui 93.3 2 4.4E-05 38.9 12.7 93 74-170 74-167 (371)
95 PF14639 YqgF: Holliday-juncti 93.2 1.2 2.7E-05 35.7 9.8 99 23-140 6-113 (150)
96 COG1548 Predicted transcriptio 92.8 0.51 1.1E-05 41.4 7.4 86 22-131 3-94 (330)
97 PRK13929 rod-share determining 92.2 8.2 0.00018 34.7 14.9 71 97-169 100-173 (335)
98 PTZ00340 O-sialoglycoprotein e 92.1 7.8 0.00017 35.4 14.6 102 23-136 2-112 (345)
99 PTZ00186 heat shock 70 kDa pre 92.0 9.9 0.00021 37.7 16.3 90 69-163 136-229 (657)
100 TIGR01175 pilM type IV pilus a 92.0 0.71 1.5E-05 41.5 7.8 71 23-106 4-79 (348)
101 TIGR03723 bact_gcp putative gl 91.4 10 0.00022 34.0 15.9 101 24-136 1-112 (314)
102 COG0248 GppA Exopolyphosphatas 91.1 1.9 4.1E-05 41.3 9.9 130 22-162 3-145 (492)
103 PF03309 Pan_kinase: Type III 91.0 5.2 0.00011 33.4 11.6 139 24-196 1-162 (206)
104 TIGR03725 bact_YeaZ universal 90.7 8.9 0.00019 31.9 13.0 96 24-139 1-99 (202)
105 KOG1385 Nucleoside phosphatase 90.1 1.6 3.4E-05 40.7 8.1 64 21-89 66-135 (453)
106 PRK14878 UGMP family protein; 89.6 15 0.00033 33.0 14.4 98 25-134 1-105 (323)
107 PRK13928 rod shape-determining 89.6 15 0.00032 32.9 15.3 73 97-171 97-172 (336)
108 TIGR00904 mreB cell shape dete 88.9 17 0.00036 32.5 18.2 65 97-163 100-167 (333)
109 COG4972 PilM Tfp pilus assembl 88.8 2 4.2E-05 39.0 7.5 71 23-106 11-86 (354)
110 COG0443 DnaK Molecular chapero 88.5 21 0.00046 34.9 15.0 91 68-162 95-188 (579)
111 PF06723 MreB_Mbl: MreB/Mbl pr 88.4 14 0.00031 33.4 12.9 95 69-168 70-167 (326)
112 PF06277 EutA: Ethanolamine ut 88.0 7.8 0.00017 36.8 11.2 98 23-124 4-113 (473)
113 PF00022 Actin: Actin; InterP 87.2 19 0.00042 32.6 13.4 93 74-170 73-166 (393)
114 PRK13410 molecular chaperone D 86.4 36 0.00078 33.9 15.5 89 69-162 111-203 (668)
115 KOG2531 Sugar (pentulose and h 85.8 5.8 0.00013 37.6 9.0 103 22-136 9-145 (545)
116 CHL00094 dnaK heat shock prote 85.7 34 0.00073 33.7 14.9 90 69-163 111-204 (621)
117 PRK00290 dnaK molecular chaper 85.6 27 0.00058 34.3 14.2 89 69-162 109-201 (627)
118 PRK10719 eutA reactivating fac 85.4 16 0.00034 34.9 11.7 142 23-170 7-170 (475)
119 PRK13411 molecular chaperone D 84.7 41 0.0009 33.3 15.0 88 69-161 109-201 (653)
120 PF02075 RuvC: Crossover junct 84.2 3.8 8.2E-05 32.7 6.3 58 24-89 1-58 (149)
121 COG3734 DgoK 2-keto-3-deoxy-ga 83.8 3.8 8.3E-05 36.4 6.6 31 22-61 5-35 (306)
122 PTZ00466 actin-like protein; P 83.2 37 0.00081 31.2 13.7 92 74-169 86-177 (380)
123 COG1214 Inactive homolog of me 83.1 28 0.0006 29.6 12.0 100 23-140 2-104 (220)
124 PRK00039 ruvC Holliday junctio 82.6 9.6 0.00021 31.0 8.1 56 23-89 3-61 (164)
125 PRK01433 hscA chaperone protei 82.2 51 0.0011 32.3 14.4 89 69-162 117-209 (595)
126 COG4020 Uncharacterized protei 82.0 4.8 0.0001 35.3 6.4 22 20-41 1-22 (332)
127 COG5146 PanK Pantothenate kina 81.3 17 0.00037 31.8 9.4 48 126-175 120-174 (342)
128 PRK13930 rod shape-determining 81.2 39 0.00084 30.0 16.5 74 95-170 100-176 (335)
129 PF11104 PilM_2: Type IV pilus 80.4 3.7 8E-05 37.0 5.5 67 26-105 1-72 (340)
130 TIGR02350 prok_dnaK chaperone 79.7 55 0.0012 31.8 13.7 89 69-162 106-199 (595)
131 PF04312 DUF460: Protein of un 79.6 11 0.00024 29.8 7.1 44 21-79 31-74 (138)
132 KOG2707 Predicted metalloprote 79.3 20 0.00043 33.0 9.5 101 24-136 34-145 (405)
133 PTZ00004 actin-2; Provisional 78.4 54 0.0012 29.9 12.6 93 74-170 80-173 (378)
134 cd00529 RuvC_resolvase Hollida 78.1 15 0.00033 29.3 7.8 57 24-88 2-58 (154)
135 COG2183 Tex Transcriptional ac 77.8 21 0.00046 36.0 10.1 104 16-140 323-429 (780)
136 COG3894 Uncharacterized metal- 77.6 9.4 0.0002 36.7 7.2 31 22-60 164-194 (614)
137 PTZ00281 actin; Provisional 76.3 59 0.0013 29.7 12.2 92 74-169 80-172 (376)
138 PRK05183 hscA chaperone protei 76.2 83 0.0018 31.0 14.0 88 70-162 126-217 (616)
139 PTZ00452 actin; Provisional 76.0 64 0.0014 29.5 13.1 92 74-169 79-171 (375)
140 PLN02920 pantothenate kinase 1 75.1 73 0.0016 29.8 13.5 30 146-175 165-194 (398)
141 TIGR00228 ruvC crossover junct 72.5 13 0.00028 30.1 6.0 57 24-89 1-57 (156)
142 PTZ00280 Actin-related protein 72.4 49 0.0011 30.6 10.7 94 74-169 81-183 (414)
143 COG0533 QRI7 Metal-dependent p 72.0 80 0.0017 28.9 14.7 135 23-169 2-150 (342)
144 PF07318 DUF1464: Protein of u 71.6 7.3 0.00016 35.5 4.9 44 26-79 1-44 (343)
145 PLN03184 chloroplast Hsp70; Pr 70.6 1.2E+02 0.0026 30.3 16.0 67 94-162 171-240 (673)
146 PRK13329 pantothenate kinase; 69.7 74 0.0016 27.5 12.0 17 24-40 3-19 (249)
147 PRK13927 rod shape-determining 68.7 85 0.0018 27.8 19.0 65 97-163 98-165 (334)
148 PF07736 CM_1: Chorismate muta 68.3 13 0.00029 28.6 4.9 39 68-106 13-51 (118)
149 COG3426 Butyrate kinase [Energ 68.0 11 0.00023 33.8 4.9 70 20-106 1-79 (358)
150 PF00871 Acetate_kinase: Aceto 66.6 37 0.0008 31.5 8.5 18 24-41 2-19 (388)
151 TIGR01319 glmL_fam conserved h 66.1 22 0.00048 33.8 6.9 51 27-89 1-52 (463)
152 PRK15080 ethanolamine utilizat 63.6 83 0.0018 27.3 9.8 25 24-58 137-161 (267)
153 PRK00976 hypothetical protein; 63.2 16 0.00036 33.1 5.3 19 23-41 2-20 (326)
154 PLN02902 pantothenate kinase 62.3 2E+02 0.0043 29.8 15.6 20 23-42 54-73 (876)
155 PRK13325 bifunctional biotin-- 60.7 24 0.00051 34.7 6.3 19 23-41 339-357 (592)
156 COG4972 PilM Tfp pilus assembl 60.6 77 0.0017 29.0 9.0 96 24-137 195-324 (354)
157 cd02185 AroH Chorismate mutase 60.1 20 0.00042 27.7 4.5 37 68-104 13-49 (117)
158 TIGR01796 CM_mono_aroH monofun 59.2 21 0.00045 27.5 4.5 37 68-104 13-49 (117)
159 PF01548 DEDD_Tnp_IS110: Trans 59.1 28 0.0006 26.8 5.5 29 24-61 1-29 (144)
160 PRK13327 pantothenate kinase; 57.7 1.3E+02 0.0027 26.1 10.8 59 130-197 97-155 (242)
161 PF05035 DGOK: 2-keto-3-deoxy- 56.7 6.9 0.00015 34.8 1.8 127 28-170 1-152 (287)
162 PF02541 Ppx-GppA: Ppx/GppA ph 55.2 98 0.0021 26.9 8.9 94 71-170 34-136 (285)
163 TIGR01175 pilM type IV pilus a 52.4 1.7E+02 0.0037 26.0 11.5 28 24-61 190-217 (348)
164 PF01968 Hydantoinase_A: Hydan 50.2 16 0.00034 32.4 3.0 19 23-41 78-96 (290)
165 PF11104 PilM_2: Type IV pilus 50.1 74 0.0016 28.5 7.4 30 22-61 180-209 (340)
166 TIGR03123 one_C_unchar_1 proba 49.8 19 0.00041 32.6 3.5 20 22-41 128-147 (318)
167 TIGR02529 EutJ ethanolamine ut 44.2 2E+02 0.0044 24.5 9.6 26 24-59 110-135 (239)
168 PF06406 StbA: StbA protein; 44.2 44 0.00096 29.8 5.0 49 22-83 164-212 (318)
169 COG4126 Hydantoin racemase [Am 44.1 54 0.0012 28.2 5.1 49 68-129 153-201 (230)
170 PF00814 Peptidase_M22: Glycop 43.0 82 0.0018 27.4 6.4 83 73-158 29-118 (268)
171 KOG2708 Predicted metalloprote 41.8 2.4E+02 0.0052 24.7 13.4 122 23-156 3-134 (336)
172 COG4012 Uncharacterized protei 41.8 1E+02 0.0023 27.4 6.6 50 23-85 228-277 (342)
173 PF08735 DUF1786: Putative pyr 41.5 99 0.0021 27.1 6.5 46 23-81 168-213 (254)
174 TIGR01865 cas_Csn1 CRISPR-asso 39.5 25 0.00054 35.8 2.9 20 22-41 1-20 (805)
175 PRK11678 putative chaperone; P 37.4 24 0.00053 33.3 2.3 67 94-162 148-225 (450)
176 COG0817 RuvC Holliday junction 37.3 93 0.002 25.3 5.3 57 25-89 1-57 (160)
177 COG2441 Predicted butyrate kin 35.9 83 0.0018 28.3 5.1 64 25-106 1-64 (374)
178 PF00195 Chal_sti_synt_N: Chal 35.5 1.2E+02 0.0025 26.1 6.0 47 71-117 98-145 (226)
179 COG2433 Uncharacterized conser 35.3 88 0.0019 30.8 5.6 42 23-79 245-286 (652)
180 PF01890 CbiG_C: Cobalamin syn 34.8 72 0.0016 24.4 4.2 57 75-138 15-71 (121)
181 PRK02853 hypothetical protein; 34.4 2.5E+02 0.0055 22.7 7.5 94 22-135 54-147 (161)
182 PF02541 Ppx-GppA: Ppx/GppA ph 33.6 1.2E+02 0.0025 26.4 5.9 29 23-61 113-141 (285)
183 COG4401 AroH Chorismate mutase 33.5 1.3E+02 0.0027 23.2 5.1 36 68-103 15-50 (125)
184 TIGR01129 secD protein-export 33.4 1.5E+02 0.0032 27.6 6.8 73 25-110 1-79 (397)
185 COG0145 HyuA N-methylhydantoin 32.2 35 0.00077 34.1 2.6 18 24-41 280-297 (674)
186 PF02801 Ketoacyl-synt_C: Beta 31.2 98 0.0021 23.1 4.4 31 76-108 26-56 (119)
187 PF03727 Hexokinase_2: Hexokin 31.0 1.6E+02 0.0034 25.2 6.1 51 148-199 3-91 (243)
188 PRK07058 acetate kinase; Provi 30.3 84 0.0018 29.4 4.5 22 20-41 2-23 (396)
189 TIGR03281 methan_mark_12 putat 30.0 44 0.00095 30.2 2.5 18 24-41 1-18 (326)
190 PRK13410 molecular chaperone D 29.3 1.5E+02 0.0032 29.6 6.4 47 73-123 307-353 (668)
191 PRK11031 guanosine pentaphosph 29.2 2.4E+02 0.0053 26.9 7.6 28 24-61 134-161 (496)
192 PF01150 GDA1_CD39: GDA1/CD39 27.7 51 0.0011 30.7 2.7 20 22-41 8-27 (434)
193 PF00012 HSP70: Hsp70 protein; 27.1 2E+02 0.0043 27.7 6.7 55 22-87 188-242 (602)
194 COG2901 Fis Factor for inversi 27.0 94 0.002 22.8 3.3 41 187-228 30-70 (98)
195 PRK07157 acetate kinase; Provi 26.9 1.1E+02 0.0024 28.7 4.6 19 23-41 4-22 (400)
196 PLN03184 chloroplast Hsp70; Pr 26.7 1.8E+02 0.0039 29.0 6.5 48 73-124 344-391 (673)
197 COG3763 Uncharacterized protei 26.4 2.3E+02 0.005 19.8 5.3 49 183-234 20-69 (71)
198 PRK00290 dnaK molecular chaper 26.3 3.5E+02 0.0076 26.5 8.4 20 22-41 185-204 (627)
199 PF08392 FAE1_CUT1_RppA: FAE1/ 26.1 2.6E+02 0.0057 25.0 6.7 36 70-105 80-115 (290)
200 COG0332 FabH 3-oxoacyl-[acyl-c 26.0 1.1E+02 0.0024 27.7 4.5 47 75-123 54-100 (323)
201 PTZ00186 heat shock 70 kDa pre 25.7 2E+02 0.0043 28.7 6.5 55 73-132 332-386 (657)
202 TIGR03706 exo_poly_only exopol 25.2 3.2E+02 0.007 24.0 7.3 28 24-61 127-154 (300)
203 PRK05183 hscA chaperone protei 25.0 3.3E+02 0.0071 26.8 7.9 21 21-41 200-220 (616)
204 TIGR03739 PRTRC_D PRTRC system 24.9 1.2E+02 0.0025 27.0 4.4 19 22-40 167-185 (320)
205 PF06723 MreB_Mbl: MreB/Mbl pr 24.6 2.8E+02 0.006 25.1 6.8 29 23-61 146-174 (326)
206 TIGR02350 prok_dnaK chaperone 24.0 3.7E+02 0.008 26.1 8.0 21 21-41 182-202 (595)
207 KOG1386 Nucleoside phosphatase 23.7 6.7E+02 0.014 24.2 9.2 62 22-89 9-79 (501)
208 PF05402 PqqD: Coenzyme PQQ sy 23.6 52 0.0011 21.9 1.5 34 194-228 21-54 (68)
209 PF04848 Pox_A22: Poxvirus A22 23.5 3.8E+02 0.0082 21.3 6.6 19 23-41 2-20 (143)
210 TIGR01991 HscA Fe-S protein as 23.3 2.2E+02 0.0048 27.9 6.3 67 71-142 289-355 (599)
211 PHA02535 P terminase ATPase su 22.3 7.7E+02 0.017 24.4 10.9 93 21-138 402-499 (581)
212 CHL00094 dnaK heat shock prote 22.3 4.6E+02 0.01 25.7 8.3 20 22-41 187-206 (621)
213 COG0282 ackA Acetate kinase [E 22.2 1.9E+02 0.0042 27.0 5.2 19 23-41 2-20 (396)
214 PTZ00009 heat shock 70 kDa pro 22.2 4.6E+02 0.01 25.9 8.4 55 22-87 194-248 (653)
215 PRK12397 propionate kinase; Re 22.1 1.4E+02 0.0031 27.9 4.5 22 20-41 1-22 (404)
216 PF07066 DUF3882: Lactococcus 22.0 4.3E+02 0.0093 21.3 7.7 19 23-41 3-26 (159)
217 PLN02666 5-oxoprolinase 21.8 70 0.0015 34.4 2.6 18 23-40 315-332 (1275)
218 PLN02377 3-ketoacyl-CoA syntha 21.6 2.3E+02 0.005 27.4 5.9 37 69-105 168-204 (502)
219 PLN02192 3-ketoacyl-CoA syntha 21.5 2.2E+02 0.0047 27.6 5.7 35 69-103 172-206 (511)
220 PF11576 DUF3236: Protein of u 21.1 4.4E+02 0.0095 21.1 6.6 48 30-89 105-152 (154)
221 PRK10640 rhaB rhamnulokinase; 21.1 1.1E+02 0.0023 29.0 3.6 31 67-101 32-62 (471)
222 COG0248 GppA Exopolyphosphatas 20.4 2.8E+02 0.0061 26.7 6.2 20 22-41 129-148 (492)
223 COG1940 NagC Transcriptional r 20.4 1.9E+02 0.0042 25.2 4.9 28 162-191 170-197 (314)
224 PRK00768 nadE NAD synthetase; 20.1 1.9E+02 0.0041 25.5 4.6 35 68-107 16-50 (268)
No 1
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.8e-38 Score=273.08 Aligned_cols=197 Identities=31% Similarity=0.494 Sum_probs=175.8
Q ss_pred CCcEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeE
Q 026689 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (235)
Q Consensus 20 m~~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ig 99 (235)
||.|+||||+|||||+++|.|. +|+++.+...++.|+...++++++.++.+++.+++.+++.+|++|..++
T Consensus 3 ~~~~~lGVDGGGTkt~a~l~~~---------~g~vlg~g~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~~~~i~~~~ 73 (301)
T COG2971 3 PMPYFLGVDGGGTKTRAVLADE---------DGNVLGRGKSGPANIQLVGKEEAVRNIKDAIREALDEAGLKPDEIAAIV 73 (301)
T ss_pred CccEEEEEccCCcceEEEEEcC---------CCcEEEEeccCCceecccchHHHHHHHHHHHHHHHHhcCCCHHHhCcee
Confidence 4569999999999999999998 9999999999999998666699999999999999999999999998888
Q ss_pred EeccCCCCccHHHHHHHHHHhhCCCCc-eEEEeCcHHHHHHhhcCCCCCEEEEEeCCCceeEEEecCCcEEEeCCCCccc
Q 026689 100 LAVSGVNHPTDQQRILNWLRDIFPGNV-RLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPIL 178 (235)
Q Consensus 100 igi~G~~~~~~~~~l~~~l~~~~~~~~-~v~v~NDa~~a~~~~~~g~~~gi~li~GTGs~~~g~~~~G~~~~~Gg~G~ll 178 (235)
+|+++.....+ .....++..+|. . .+.|+||+..|+.++. +.++|+++++||||+++++ .+|+..|.|||||++
T Consensus 74 agla~ag~~~~--~~~~~~~~~l~~-a~~v~v~~Dg~iAl~ga~-~~~~Gii~i~GTGSi~~~~-~gg~~~r~GG~Gf~I 148 (301)
T COG2971 74 AGLALAGANVE--EAREELERLLPF-AGKVDVENDGLIALRGAL-GDDDGIIVIAGTGSIGYGR-KGGRRERVGGWGFPI 148 (301)
T ss_pred eeeeccCcchh--HHHHHHHHhcCc-cceEEEecChHHHHhhcc-CCCCCEEEEecCCeEEEEE-eCCeeEEecCcCccc
Confidence 88888765543 222333445664 4 8999999999999765 4469999999999999988 789999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHHHhh
Q 026689 179 GDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGYMIYK 231 (235)
Q Consensus 179 gd~gSg~~ig~~al~~~~~~~dg~~~~t~l~~~~~~~~~~~~~~~l~~~~y~~ 231 (235)
||+|||+|||+++++..++++||+.+.|+|.+.++++|+. |+++|++|+|..
T Consensus 149 gDegSga~ig~~~L~~~lra~DG~~~~t~L~d~v~~~f~~-d~edlv~~~y~a 200 (301)
T COG2971 149 GDEGSGAWIGREALQEALRAFDGRREATPLTDAVMAEFNL-DPEDLVAFIYKA 200 (301)
T ss_pred cccchHHHHHHHHHHHHHHHhcCCccCChHHHHHHHHhCC-CHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999997 999999999975
No 2
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.4e-37 Score=263.22 Aligned_cols=204 Identities=29% Similarity=0.445 Sum_probs=192.6
Q ss_pred CCcEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccc-ceee
Q 026689 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSA-VRAV 98 (235)
Q Consensus 20 m~~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~-i~~i 98 (235)
|+.++.||++|.|.++++++|+ +++++.+....++|+...+.+.+.++|.+++++++.+++.+++. ++++
T Consensus 1 ~~~~y~GvEGgaT~s~~Vivd~---------~~~~~~~a~~~~Tnh~~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~l 71 (336)
T KOG1794|consen 1 LKDFYGGVEGGATCSRLVIVDE---------DGTILGRAVGGGTNHWLIGSTTCASRIEDMIREAKEKAGWDKKGPLRSL 71 (336)
T ss_pred CCceeEeecCCcceeEEEEECC---------CCCEeeEeeccccccccCCchHHHHHHHHHHHHHHhhcCCCccCcccee
Confidence 4568999999999999999999 99999999999999988999999999999999999999999887 8999
Q ss_pred EEeccCCCCccHHHHHHHHHHhhCCCCc-eEEEeCcHHHHHHhhcCCCCCEEEEEeCCCceeEEEecCCcEEEeCCCCcc
Q 026689 99 CLAVSGVNHPTDQQRILNWLRDIFPGNV-RLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPI 177 (235)
Q Consensus 99 gigi~G~~~~~~~~~l~~~l~~~~~~~~-~v~v~NDa~~a~~~~~~g~~~gi~li~GTGs~~~g~~~~G~~~~~Gg~G~l 177 (235)
|++++|.+++.....|..+|++.||... .++|.||+..+++++..+...|+||++|||++|..+++||...+||||||+
T Consensus 72 gL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVLiaGTgs~crl~~~DGs~~~~ggwg~~ 151 (336)
T KOG1794|consen 72 GLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVLIAGTGSNCRLVNPDGSEKGAGGWGHM 151 (336)
T ss_pred eeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEEEecCCceeEEECCCCCccCCCCCCCc
Confidence 9999999999999999999999999533 599999999999888888889999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHhcCCCCC----chhHHHHHHHcCCCChhhHHHHHHhhc
Q 026689 178 LGDWGSGYGIAAQALTAVIRAYDGRGPD----TMLTSNILSTLELSSPDELIGYMIYKL 232 (235)
Q Consensus 178 lgd~gSg~~ig~~al~~~~~~~dg~~~~----t~l~~~~~~~~~~~~~~~l~~~~y~~~ 232 (235)
+||+||+|||+++|++..++..||+++. +.+.+.++++|+++|+.++++|+|++-
T Consensus 152 iGd~GSaywia~~Avq~vfda~dg~e~~~~~i~~v~~tif~~~~l~d~l~ml~~~Ys~f 210 (336)
T KOG1794|consen 152 IGDGGSAYWIARQAVQMVFDAEDGFENMMDKIKDVKQTIFKHFNLRDRLQMLEHLYSDF 210 (336)
T ss_pred cCCCcchhhhhhhhhhheeehhcCcccccchHHHHHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 9999999999999999999999999986 899999999999999999999999874
No 3
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=99.97 E-value=1.7e-29 Score=220.87 Aligned_cols=167 Identities=40% Similarity=0.576 Sum_probs=147.5
Q ss_pred EEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEeccC
Q 026689 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (235)
Q Consensus 25 LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G 104 (235)
||||+|||||+++++|. +|+++.+....++|+...+.++++++|.+++++++++.+.++.++..+++|++|
T Consensus 1 lGIDgGgTkt~~vl~d~---------~g~il~~~~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g~aG 71 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDE---------NGNILGRGKGGGANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIGAAG 71 (271)
T ss_dssp EEEEECSSEEEEEEEET---------TSEEEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEEEEE
T ss_pred CEEeeChheeeeEEEeC---------CCCEEEEEEeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeeeEee
Confidence 79999999999999999 899999999999888767889999999999999999999988889999999999
Q ss_pred CCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCEEEEEeCCCceeEEEecCCcEEEeCCCCccccccchH
Q 026689 105 VNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSG 184 (235)
Q Consensus 105 ~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~g~~~gi~li~GTGs~~~g~~~~G~~~~~Gg~G~llgd~gSg 184 (235)
...+.....+.+.+.. .++.+.||+..++++... ++++++++||||++++++.+|+..|+|||||+++|+|||
T Consensus 72 ~~~~~~~~~~~~~~~~-----~~v~~~~Da~~al~~~~~--~~giv~I~GTGS~~~~~~~~g~~~r~gG~G~~~gD~GSg 144 (271)
T PF01869_consen 72 YGRAGDEQEFQEEIVR-----SEVIVVNDAAIALYGATA--EDGIVVIAGTGSIAYGRDRDGRVIRFGGWGHCLGDEGSG 144 (271)
T ss_dssp EEETTTTTHHHHHHHH-----HEEEEEEHHHHHHHHHST--SSEEEEEESSSEEEEEEETTSEEEEEEESCTTTTTTTSH
T ss_pred ecCcccccchhhcceE-----EEEEEEHHHHHHhCCCCC--CcEEEEEcCCCceEEEEEcCCcEEEeCCCCCCcCCCCcH
Confidence 9766553334433322 279999999999987654 589999999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCch
Q 026689 185 YGIAAQALTAVIRAYDGRGPDTM 207 (235)
Q Consensus 185 ~~ig~~al~~~~~~~dg~~~~t~ 207 (235)
|||++++|+..++++|++.+.++
T Consensus 145 ~~ig~~~L~~~~~~~d~~~~~~~ 167 (271)
T PF01869_consen 145 YWIGRRALRAVLRELDGRAEPTP 167 (271)
T ss_dssp HHHHHHHHHHHHHHHTTSSTTSH
T ss_pred HHHHHHHHhHHHHHhcCccccCc
Confidence 99999999999999999988777
No 4
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=99.83 E-value=3.8e-19 Score=158.35 Aligned_cols=147 Identities=22% Similarity=0.213 Sum_probs=114.8
Q ss_pred CCcEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeE
Q 026689 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (235)
Q Consensus 20 m~~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ig 99 (235)
++.+++|||+|+|+++++++|. +|+++.+.+.++... ...+++.+.|.+.+++++.+.+ ...++.+|+
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~---------~g~~l~~~~~~~~~~--~~~~~~~~~i~~~i~~~~~~~~-~~~~~iGIg 71 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDL---------DGEILLRERIPTPTP--DPEEAILEAILALVAELLKQAQ-GRVAIIGIG 71 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECC---------CCcEEEEEEEecCCC--CchhHHHHHHHHHHHHHHHhcC-CcCceEEEE
Confidence 3458999999999999999999 999988888765433 3446889999999999998765 323345554
Q ss_pred EeccCCCCccH------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCEEEEEeCCCceeEEE
Q 026689 100 LAVSGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGF 162 (235)
Q Consensus 100 igi~G~~~~~~------------~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~-----~g~~~gi~li~GTGs~~~g~ 162 (235)
++.||..+... ..+|++.|++.++ .||+|+||+++++++|. .+.++.+++++|||++ +++
T Consensus 72 i~~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~Pv~veNDan~aalaE~~~g~~~~~~~~~~i~~gtGIG-~gi 148 (314)
T COG1940 72 IPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLG--LPVFVENDANAAALAEAWFGAGRGIDDVVYITLGTGIG-GGI 148 (314)
T ss_pred eccceeccCCcEEeecCCCCccccccHHHHHHHHHC--CCEEEecHHHHHHHHHHHhCCCCCCCCEEEEEEcccee-EEE
Confidence 54444433221 2569999999998 89999999999999874 3457899999999995 678
Q ss_pred ecCCcEEE-----eCCCCcccccc
Q 026689 163 TEDGRDAR-----AAGAGPILGDW 181 (235)
Q Consensus 163 ~~~G~~~~-----~Gg~G~llgd~ 181 (235)
+.||++++ +|++||+.-+.
T Consensus 149 v~~g~l~~G~~g~age~Gh~~v~~ 172 (314)
T COG1940 149 IVNGKLLRGANGNAGEIGHMVVDP 172 (314)
T ss_pred EECCEEeecCCCccccccceEECC
Confidence 89999987 79999986543
No 5
>PRK09698 D-allose kinase; Provisional
Probab=99.81 E-value=8.7e-19 Score=155.25 Aligned_cols=142 Identities=13% Similarity=0.152 Sum_probs=114.7
Q ss_pred CCCcEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceee
Q 026689 19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (235)
Q Consensus 19 ~m~~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~i 98 (235)
+|..+++|||+|+|+++++++|. +|+++.+.+.+.... ..++. ++.+.+.+++++++.+ .++.+|
T Consensus 1 ~~~~~~lgidig~t~i~~~l~d~---------~g~i~~~~~~~~~~~--~~~~~-~~~l~~~i~~~~~~~~---~~i~gi 65 (302)
T PRK09698 1 KQKNVVLGIDMGGTHIRFCLVDA---------EGEILHCEKKRTAEV--IAPDL-VSGLGEMIDEYLRRFN---ARCHGI 65 (302)
T ss_pred CCccEEEEEEcCCcEEEEEEEcC---------CCCEEEEEEeCCccc--cchHH-HHHHHHHHHHHHHHcC---CCeeEE
Confidence 36679999999999999999999 899999887765422 34444 8888999999888754 478999
Q ss_pred EEeccCCCCcc-------------H--HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc----CCCCCEEEEEeCCCcee
Q 026689 99 CLAVSGVNHPT-------------D--QQRILNWLRDIFPGNVRLYVHNDALAALASGT----MGKLHGCVLIAGTGTIA 159 (235)
Q Consensus 99 gigi~G~~~~~-------------~--~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~----~g~~~gi~li~GTGs~~ 159 (235)
+|++||+.+.+ . ..++.+.|++.++ .||.++||++++++++. .+.++.+++.+|||++
T Consensus 66 gia~pG~vd~~~g~i~~~~~~~~~~~~~~~l~~~l~~~~~--~pv~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtGIG- 142 (302)
T PRK09698 66 VMGFPALVSKDRRTVISTPNLPLTALDLYDLADKLENTLN--CPVFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTGMG- 142 (302)
T ss_pred EEeCCcceeCCCCEEEecCCCCccccccCCHHHHHHHHhC--CCEEEcchHhHHHHHHHHhcCCCCceEEEEEecCceE-
Confidence 99999986432 1 2468899999997 89999999999888764 2345789999999995
Q ss_pred EEEecCCcEEE-----eCCCCccc
Q 026689 160 YGFTEDGRDAR-----AAGAGPIL 178 (235)
Q Consensus 160 ~g~~~~G~~~~-----~Gg~G~ll 178 (235)
++++.||++++ +|++||+.
T Consensus 143 ~giv~~G~~~~G~~g~agEiGh~~ 166 (302)
T PRK09698 143 FAVWMNGAPWTGAHGVAGELGHIP 166 (302)
T ss_pred EEEEECCEEeeCCCCCccccCceE
Confidence 67889999875 89999985
No 6
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=99.81 E-value=1.1e-18 Score=155.34 Aligned_cols=139 Identities=17% Similarity=0.155 Sum_probs=118.0
Q ss_pred EEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEeccC
Q 026689 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (235)
Q Consensus 25 LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G 104 (235)
||||+|+|+++++++|. +|+++.+.+.+.. .+++++++.+.+.+++++++.+....++.+|++++||
T Consensus 1 lgidig~t~~~~~l~d~---------~g~i~~~~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG 67 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDE---------EGNILSKWKVPTD----TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPG 67 (318)
T ss_pred CEEEeCCCEEEEEEECC---------CCCEEEEEEeCCC----CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccc
Confidence 58999999999999999 8999988776432 3678899999999999999887777789999999999
Q ss_pred CCCccH------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCEEEEEeCCCceeEEEecCCc
Q 026689 105 VNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTEDGR 167 (235)
Q Consensus 105 ~~~~~~------------~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~-----~g~~~gi~li~GTGs~~~g~~~~G~ 167 (235)
+.++.. ..++.+.|++.|+ .||+++||++++++++. .+.++.+++.+|||+ +++++.||+
T Consensus 68 ~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~--~pv~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~ 144 (318)
T TIGR00744 68 PVNRQRGTVYFAVNLDWKQEPLKEKVEARVG--LPVVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGE 144 (318)
T ss_pred cccCCCCEEEecCCCCCCCCCHHHHHHHHHC--CCEEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCE
Confidence 875421 3478999999998 89999999999988764 345789999999999 567889999
Q ss_pred EEE-----eCCCCcccc
Q 026689 168 DAR-----AAGAGPILG 179 (235)
Q Consensus 168 ~~~-----~Gg~G~llg 179 (235)
+++ +|++||++-
T Consensus 145 ~~~G~~g~agEiGh~~v 161 (318)
T TIGR00744 145 IRHGHNGVGAEIGHIRM 161 (318)
T ss_pred EeecCCCCCcccCceEe
Confidence 876 899999874
No 7
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.80 E-value=3.4e-18 Score=148.47 Aligned_cols=137 Identities=16% Similarity=0.097 Sum_probs=109.7
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEec
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi 102 (235)
++++||+|+|+++++++|. +++++.+.+.+.. . .+++++++.+.+.++++.... ..+.+|+|++
T Consensus 1 ~~lgidiggt~i~~~l~d~---------~g~i~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~~~----~~~~gIgv~~ 64 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDE---------NLQRIWHKRVPTP-R--EDYPQLLQILRDLTEEADTYC----GVQGSVGIGI 64 (256)
T ss_pred CEEEEEECCCcEEEEEECC---------CCCEEEEEEecCC-C--cCHHHHHHHHHHHHHHHHhhc----CCCceEEEEe
Confidence 3699999999999999999 8999988887543 2 467788888887777664322 2346899999
Q ss_pred cCCCCcc------------HHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCEEEEEeCCCceeEEEecC
Q 026689 103 SGVNHPT------------DQQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTED 165 (235)
Q Consensus 103 ~G~~~~~------------~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~-----~g~~~gi~li~GTGs~~~g~~~~ 165 (235)
||+.+.. ...++.+.|+++|+ .||.++||++++++++. ++.++.+++.+|||++ ++++.|
T Consensus 65 pG~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~--~pV~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtGiG-~giv~~ 141 (256)
T PRK13311 65 PGLPNADDGTVFTANVPSAMGQPLQADLSRLIQ--REVRIDNDANCFALSEAWDPEFRTYPTVLGLILGTGVG-GGLIVN 141 (256)
T ss_pred cCcEECCCCEEEccCCCcccCCChHHHHHHHHC--CCEEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcCeE-EEEEEC
Confidence 9985422 12578999999997 89999999999998874 2457899999999995 678899
Q ss_pred CcEEE-----eCCCCccc
Q 026689 166 GRDAR-----AAGAGPIL 178 (235)
Q Consensus 166 G~~~~-----~Gg~G~ll 178 (235)
|++++ +|++||+.
T Consensus 142 G~l~~G~~g~AGEiGh~~ 159 (256)
T PRK13311 142 GSIVSGRNHITGEFGHFR 159 (256)
T ss_pred CEEecCCCCCCccceeEE
Confidence 99875 89999975
No 8
>PRK09557 fructokinase; Reviewed
Probab=99.80 E-value=3.7e-18 Score=151.34 Aligned_cols=137 Identities=23% Similarity=0.179 Sum_probs=111.8
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEec
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi 102 (235)
++||||+|+|+++++++|. +|+++.+.+.++. . .+++++++.+.+.++++..+.+ .+.+|++++
T Consensus 1 ~~lgidig~t~~~~~l~d~---------~g~i~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~~~~----~~~gIgi~~ 64 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDD---------AGEELFRKRLPTP-R--DDYQQTIEAIATLVDMAEQATG----QRGTVGVGI 64 (301)
T ss_pred CEEEEEECCCcEEEEEECC---------CCCEEEEEEecCC-C--CCHHHHHHHHHHHHHHHHhhcC----CceEEEecC
Confidence 3799999999999999999 8999988876543 2 4678888888888888765432 457899999
Q ss_pred cCCCCcc------------HHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCEEEEEeCCCceeEEEecC
Q 026689 103 SGVNHPT------------DQQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTED 165 (235)
Q Consensus 103 ~G~~~~~------------~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~-----~g~~~gi~li~GTGs~~~g~~~~ 165 (235)
||+.+++ +..++++.|+++|+ .||.++||++++++++. .+.++.+++.+|||++ ++++.|
T Consensus 65 pG~vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~--~pv~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtGiG-~giv~~ 141 (301)
T PRK09557 65 PGSISPYTGLVKNANSTWLNGQPLDKDLSARLN--REVRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTGCG-AGVAIN 141 (301)
T ss_pred cccCcCCCCeEEecCCccccCCCHHHHHHHHHC--CCEEEccchhHHHHHHHHhcccCCCCcEEEEEEccceE-EEEEEC
Confidence 9997532 12578899999998 89999999999988873 3457889999999995 678899
Q ss_pred CcEEE-----eCCCCccc
Q 026689 166 GRDAR-----AAGAGPIL 178 (235)
Q Consensus 166 G~~~~-----~Gg~G~ll 178 (235)
|++++ +|++||+.
T Consensus 142 G~l~~G~~g~aGEiGH~~ 159 (301)
T PRK09557 142 GRVHIGGNGIAGEWGHNP 159 (301)
T ss_pred CEEEecCCCCCcccCcee
Confidence 99876 89999975
No 9
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.79 E-value=2.6e-18 Score=152.34 Aligned_cols=137 Identities=19% Similarity=0.130 Sum_probs=111.6
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEecc
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~ 103 (235)
++|||+|+|+++++++|. +|+++.+.+.+.. . .+++++++.+.+.++++..+.+ .+.+|+|++|
T Consensus 2 ~lgidig~t~i~~~l~d~---------~g~i~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~~~~----~~~~igia~p 65 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNE---------KLELQWEERVPTP-R--DSYDAFLDAVCELVAEADQRFG----CKGSVGIGIP 65 (303)
T ss_pred eEEEEeCCCcEEEEEECC---------CCcEEEEEEecCC-C--cCHHHHHHHHHHHHHHHHhhcC----CcceEEEeCC
Confidence 699999999999999999 8999988876543 2 4688888999888888765432 2458999999
Q ss_pred CCCCccH------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCEEEEEeCCCceeEEEecCC
Q 026689 104 GVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTEDG 166 (235)
Q Consensus 104 G~~~~~~------------~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~-----~g~~~gi~li~GTGs~~~g~~~~G 166 (235)
|+.+++. ..++++.|+++|+ .||+++||++++++++. .+.++.++|.+|||++ ++++.||
T Consensus 66 G~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~--~pV~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGiG-~giv~~G 142 (303)
T PRK13310 66 GMPETEDGTLYAANVPAASGKPLRADLSARLG--RDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVG-GGLVFNG 142 (303)
T ss_pred CcccCCCCEEeccCcccccCCcHHHHHHHHHC--CCeEEeccHhHHHHHHhhhccccCCCcEEEEEecCceE-EEEEECC
Confidence 9975421 2478999999998 89999999999988773 3457899999999995 6788999
Q ss_pred cEEE-----eCCCCcccc
Q 026689 167 RDAR-----AAGAGPILG 179 (235)
Q Consensus 167 ~~~~-----~Gg~G~llg 179 (235)
++++ +|++||+.-
T Consensus 143 ~l~~G~~g~aGEiGH~~v 160 (303)
T PRK13310 143 KPISGRSYITGEFGHMRL 160 (303)
T ss_pred EEeeCCCCccccccceee
Confidence 9875 899999853
No 10
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=99.74 E-value=1.2e-17 Score=136.71 Aligned_cols=135 Identities=20% Similarity=0.222 Sum_probs=114.0
Q ss_pred EEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEeccCC
Q 026689 26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGV 105 (235)
Q Consensus 26 giD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G~ 105 (235)
|||+|+|+++++++|. +|+++.+.+.+.. .+++++++.+.+.+++++.+.+.. +|+|++||+
T Consensus 1 gidig~~~i~~~l~d~---------~g~ii~~~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~~-----gIgi~~pG~ 62 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDL---------DGEIIYSESIPTP----TSPEELLDALAELIERLLADYGRS-----GIGISVPGI 62 (179)
T ss_dssp EEEEESSEEEEEEEET---------TSCEEEEEEEEHH----SSHHHHHHHHHHHHHHHHHHHTCE-----EEEEEESSE
T ss_pred CEEECCCEEEEEEECC---------CCCEEEEEEEECC----CCHHHHHHHHHHHHHHHHhhcccc-----cEEEecccc
Confidence 7999999999999999 9999999887643 478999999999999999886542 999999999
Q ss_pred CCccH------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCEEEEEeCCCceeEEEecCCcE
Q 026689 106 NHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTEDGRD 168 (235)
Q Consensus 106 ~~~~~------------~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~-----~g~~~gi~li~GTGs~~~g~~~~G~~ 168 (235)
.+... ..++.+.|++.|+ .||.++||++++++++. ...++.+++..|||+ +++++.||++
T Consensus 63 v~~~~g~i~~~~~~~~~~~~l~~~l~~~~~--~pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~Gi-G~~ii~~g~i 139 (179)
T PF00480_consen 63 VDSEKGRIISSPNPGWENIPLKEELEERFG--VPVIIENDANAAALAEYWFGAAKDCDNFLYLYIGTGI-GAGIIINGKI 139 (179)
T ss_dssp EETTTTEEEECSSGTGTTCEHHHHHHHHHT--SEEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSSE-EEEEEETTEE
T ss_pred CcCCCCeEEecCCCCcccCCHHHHhhcccc--eEEEEecCCCcceeehhhcCccCCcceEEEEEeecCC-Ccceeccccc
Confidence 64432 2578999999997 89999999999988764 245789999999998 5678889998
Q ss_pred EE-----eCCCCcccccc
Q 026689 169 AR-----AAGAGPILGDW 181 (235)
Q Consensus 169 ~~-----~Gg~G~llgd~ 181 (235)
++ +|++||+.-++
T Consensus 140 ~~G~~~~aGeigh~~~~~ 157 (179)
T PF00480_consen 140 YRGSNGFAGEIGHMPVDP 157 (179)
T ss_dssp ETTTTS-TTGGGGSBSST
T ss_pred ccCCCccccceeeeeccC
Confidence 85 79999988664
No 11
>PRK12408 glucokinase; Provisional
Probab=99.74 E-value=2.6e-17 Score=148.56 Aligned_cols=139 Identities=19% Similarity=0.132 Sum_probs=96.2
Q ss_pred ccccccCCCcEEEEEEcCccceEEEEEeCccCCCCCCCCCC------EEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHH
Q 026689 13 ETAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLP------VLARAAAGCSNHNSVGEDAARETIEKVMADALL 86 (235)
Q Consensus 13 ~~~~~~~m~~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~------il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~ 86 (235)
++.|+.+ .++|++|+|||++|++++|. +++ ++...+.++..+ +.+.++++++++
T Consensus 9 ~~~~~~~--~~~L~~DIGGT~i~~al~d~---------~g~~~~~~~~~~~~~~~t~~~---------~~~~~~i~~~~~ 68 (336)
T PRK12408 9 AVAVPRP--ESFVAADVGGTHVRVALVCA---------SPDAAKPVELLDYRTYRCADY---------PSLAAILADFLA 68 (336)
T ss_pred cccCccc--ccEEEEEcChhhhheeEEec---------cCCccccccccceeEecCCCc---------cCHHHHHHHHHh
Confidence 3445443 24799999999999999997 565 344444333222 234455556655
Q ss_pred HcCCCcccceeeEEeccCC-CCcc-------HHHHHHHHHHhhCCCCc-eEEEeCcHHHHHHhhc-C-------------
Q 026689 87 KSGSNRSAVRAVCLAVSGV-NHPT-------DQQRILNWLRDIFPGNV-RLYVHNDALAALASGT-M------------- 143 (235)
Q Consensus 87 ~~~~~~~~i~~igigi~G~-~~~~-------~~~~l~~~l~~~~~~~~-~v~v~NDa~~a~~~~~-~------------- 143 (235)
+ . .++.+|+||+||+ .+.. .|..+.+.|++.++ . ||.++||++++++++. .
T Consensus 69 ~-~---~~~~~igIg~pG~~~~~g~v~~~nl~w~~~~~~l~~~~~--~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~ 142 (336)
T PRK12408 69 E-C---APVRRGVIASAGYALDDGRVITANLPWTLSPEQIRAQLG--LQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQ 142 (336)
T ss_pred c-C---CCcCEEEEEecCCceECCEEEecCCCCccCHHHHHHHcC--CCeEEEeecHHHHHcccccCCHhHeeeecCCCC
Confidence 4 1 2578999999998 2110 13456788998887 6 5999999999998873 2
Q ss_pred CC-CCEEEEEeCCCceeEEEecCCc---EEEeCCCCccc
Q 026689 144 GK-LHGCVLIAGTGTIAYGFTEDGR---DARAAGAGPIL 178 (235)
Q Consensus 144 g~-~~gi~li~GTGs~~~g~~~~G~---~~~~Gg~G~ll 178 (235)
+. .+.+++.+|||+++ +++.||+ ...+||+||+.
T Consensus 143 ~~~~~~~~i~~GTGiGg-givi~g~~g~~~~agE~GH~~ 180 (336)
T PRK12408 143 AAAGPALVLGPGTGLGA-ALWIPNGGRPVVLPTEAGQAA 180 (336)
T ss_pred CCCCcEEEEECCCcceE-EEEEcCCCceeeecCcccccc
Confidence 22 47899999999965 5667764 55699999975
No 12
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=99.74 E-value=6.6e-17 Score=142.59 Aligned_cols=136 Identities=18% Similarity=0.155 Sum_probs=108.3
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEecc
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~ 103 (235)
++|||+|+|+++++++|. +|+++.+.+.+.. . ..+++++.+.+.+.++++.. ++.+|+|++|
T Consensus 3 ~lgvdig~~~i~~~l~dl---------~g~i~~~~~~~~~-~-~~~~~~~~~~i~~~i~~~~~-------~~~~igi~~p 64 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGE---------DGQIRQRRQIPTP-A-SQTPEALRQALSALVSPLQA-------QADRVAVAST 64 (291)
T ss_pred EEEEEECCCEEEEEEEcC---------CCcEEEEEEecCC-C-CCCHHHHHHHHHHHHHHhhh-------cCcEEEEeCc
Confidence 799999999999999999 8999987776543 2 13577778888777776542 3568999999
Q ss_pred CCCCcc-----------H--HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc----CCCCCEEEEEeCCCceeEEEecCC
Q 026689 104 GVNHPT-----------D--QQRILNWLRDIFPGNVRLYVHNDALAALASGT----MGKLHGCVLIAGTGTIAYGFTEDG 166 (235)
Q Consensus 104 G~~~~~-----------~--~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~----~g~~~gi~li~GTGs~~~g~~~~G 166 (235)
|+.+.. . ..++++.|+++|+ .||+++||++++++++. .+.++.+++.+|||++ .|++.||
T Consensus 65 G~vd~~~~~~~~~~~~~~w~~~~l~~~l~~~~~--~pv~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~GiG-~giv~~G 141 (291)
T PRK05082 65 GIINDGILTALNPHNLGGLLHFPLVQTLEQLTD--LPTIALNDAQAAAWAEYQALPDDIRNMVFITVSTGVG-GGIVLNG 141 (291)
T ss_pred ccccCCeeEEecCCCCccccCCChHHHHHHHhC--CCEEEECcHHHHHHHHHHhcCCCCCCEEEEEECCCcc-eEEEECC
Confidence 986421 1 2468899999998 89999999999988774 2456899999999995 6788999
Q ss_pred cEEE-----eCCCCccccc
Q 026689 167 RDAR-----AAGAGPILGD 180 (235)
Q Consensus 167 ~~~~-----~Gg~G~llgd 180 (235)
++++ +|++||+.-+
T Consensus 142 ~~~~G~~g~AGEiGh~~v~ 160 (291)
T PRK05082 142 KLLTGPGGLAGHIGHTLAD 160 (291)
T ss_pred EEeeCCCCccccccceEec
Confidence 8865 8999998744
No 13
>PRK00292 glk glucokinase; Provisional
Probab=99.72 E-value=4.9e-16 Score=138.81 Aligned_cols=135 Identities=16% Similarity=0.065 Sum_probs=95.8
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHH-cCCCcccceeeEE
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLK-SGSNRSAVRAVCL 100 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~-~~~~~~~i~~igi 100 (235)
+++|++|+|||++|++++|.. ++.++.+.+.++... +.+.+.+.+++++ .+ .++.+|+|
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~--------~~~~~~~~~~~~~~~---------~~~~~~l~~~l~~~~~---~~~~gigI 61 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWA--------NGEIEQIKTYATADY---------PSLEDAIRAYLADEHG---VQVRSACF 61 (316)
T ss_pred ceEEEEEcCccceEEEEEecC--------CCceeeeEEEecCCC---------CCHHHHHHHHHHhccC---CCCceEEE
Confidence 478999999999999999951 455676666543211 2355555556554 22 25789999
Q ss_pred eccCCCCccH-------HHHHHHHHHhhCCCCce-EEEeCcHHHHHHhhcC-----------C----CCCEEEEEeCCCc
Q 026689 101 AVSGVNHPTD-------QQRILNWLRDIFPGNVR-LYVHNDALAALASGTM-----------G----KLHGCVLIAGTGT 157 (235)
Q Consensus 101 gi~G~~~~~~-------~~~l~~~l~~~~~~~~~-v~v~NDa~~a~~~~~~-----------g----~~~gi~li~GTGs 157 (235)
|+||+.+... |....+.|++.|+ .| |.++||++++++++.. + .++.++|.+|||+
T Consensus 62 g~pG~vd~~~i~~~n~~w~~~~~~l~~~~~--~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGi 139 (316)
T PRK00292 62 AIAGPVDGDEVRMTNHHWAFSIAAMKQELG--LDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGL 139 (316)
T ss_pred EEeCcccCCEEEecCCCcccCHHHHHHHhC--CCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcc
Confidence 9999975321 2223578888887 75 9999999999998742 1 2578999999999
Q ss_pred eeEEEecCC---cEEEeCCCCcccc
Q 026689 158 IAYGFTEDG---RDARAAGAGPILG 179 (235)
Q Consensus 158 ~~~g~~~~G---~~~~~Gg~G~llg 179 (235)
+ .+++.|| ....+||+||+.-
T Consensus 140 G-~giv~~g~~g~~g~agE~GH~~~ 163 (316)
T PRK00292 140 G-VAGLVPVDGRWIVLPGEGGHVDF 163 (316)
T ss_pred e-EEEEEecCCceEEccCCcccccC
Confidence 6 5666664 3445899999753
No 14
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=99.59 E-value=8e-15 Score=142.54 Aligned_cols=135 Identities=17% Similarity=0.056 Sum_probs=97.4
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEe
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igig 101 (235)
.++|++|+|||++|++++|. +|+++.+.+.++..+ +.+.+++++++++.+. .++.+||||
T Consensus 18 ~~~L~iDIGGT~ir~al~~~---------~g~i~~~~~~~t~~~---------~~~~~~i~~~l~~~~~--~~~~~igig 77 (638)
T PRK14101 18 GPRLLADVGGTNARFALETG---------PGEITQIRVYPGADY---------PTLTDAIRKYLKDVKI--GRVNHAAIA 77 (638)
T ss_pred CCEEEEEcCchhheeeeecC---------CCcccceeEEecCCC---------CCHHHHHHHHHHhcCC--CCcceEEEE
Confidence 45899999999999999988 888888877765322 3456666677665543 258899999
Q ss_pred ccCCCCcc--------HHHHHHHHHHhhCCCCceEEEeCcHHHHHHhh---------c----CCCCCEEEEEeCC--Cce
Q 026689 102 VSGVNHPT--------DQQRILNWLRDIFPGNVRLYVHNDALAALASG---------T----MGKLHGCVLIAGT--GTI 158 (235)
Q Consensus 102 i~G~~~~~--------~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~---------~----~g~~~gi~li~GT--Gs~ 158 (235)
+||+.+.. +..++ +.|++.|+. .||.++||++++++++ . ++.++++++++|| |.+
T Consensus 78 ~pGpVd~~~~~~~nl~w~~~~-~~l~~~~g~-~~v~l~ND~~aaA~ge~~l~~~e~~~~G~g~~~~~~~~~~lGtGTGlG 155 (638)
T PRK14101 78 IANPVDGDQVRMTNHDWSFSI-EATRRALGF-DTLLVVNDFTALAMALPGLTDAQRVQVGGGTRRQNSVIGLLGPGTGLG 155 (638)
T ss_pred EecCccCCeeeecCCCcEecH-HHHHHHcCC-CeEEEEchHHHHHcCCccCCHHHeEEeCCCCCCCCCcEEEEECCccce
Confidence 99997542 12344 778888872 3589999999999983 1 2345778888655 565
Q ss_pred eEEEe-cCCc-EEEeCCCCccc
Q 026689 159 AYGFT-EDGR-DARAAGAGPIL 178 (235)
Q Consensus 159 ~~g~~-~~G~-~~~~Gg~G~ll 178 (235)
+++++ .+|+ ++..+++||+.
T Consensus 156 ~a~lv~~~g~~~~~g~E~GH~~ 177 (638)
T PRK14101 156 VSGLIPADDRWIALGSEGGHAS 177 (638)
T ss_pred eeEEEecCCeeEECCCCccccC
Confidence 33453 6666 77788999974
No 15
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=99.57 E-value=4e-14 Score=126.65 Aligned_cols=134 Identities=18% Similarity=0.068 Sum_probs=89.2
Q ss_pred EEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCC-cccceeeEEecc
Q 026689 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSN-RSAVRAVCLAVS 103 (235)
Q Consensus 25 LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~igigi~ 103 (235)
|.+|+|||++|++++|. ++.++.+.++.++ .. ++.+.+.+++++++.+.. ...+.+++||++
T Consensus 1 l~~DIGGT~i~~glvd~---------~g~~l~~~~~~~~----~~----~~~l~~~i~~~l~~~~~~~~~~~~~~~Igi~ 63 (316)
T TIGR00749 1 LVGDIGGTNARLALCEI---------APGEISQAKTYSG----LD----FPSLEAVVRVYLEEHKVELKDPIAKGCFAIA 63 (316)
T ss_pred CeEecCcceeeEEEEec---------CCCceeeeEEEec----CC----CCCHHHHHHHHHHhcccccCCCcCeEEEEEe
Confidence 57999999999999997 6665555433211 11 234666666666544321 123567888999
Q ss_pred CCCCcc--------HHHHHHHHHHhhCCCCc-eEEEeCcHHHHHHhh--------c-----CCCCCEEEEEeCCCceeE-
Q 026689 104 GVNHPT--------DQQRILNWLRDIFPGNV-RLYVHNDALAALASG--------T-----MGKLHGCVLIAGTGTIAY- 160 (235)
Q Consensus 104 G~~~~~--------~~~~l~~~l~~~~~~~~-~v~v~NDa~~a~~~~--------~-----~g~~~gi~li~GTGs~~~- 160 (235)
|+.+.. +..++. .|++.++ . ||.++||++++++++ . ++.++++++++|||++++
T Consensus 64 Gpv~~~~v~~~nl~w~~~~~-~l~~~~g--~~~V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~~~~~v~lGtGtG~G~ 140 (316)
T TIGR00749 64 CPITGDWVAMTNHTWAFSIA-ELKQNLG--FSHLEIINDFTAVSYAIPGLKKEDLIQFGGAEPVEGKPIAILGAGTGLGV 140 (316)
T ss_pred CcccCCEEEecCCCCeeCHH-HHHHhcC--CCeEEEEecHHHHHcCCCCCCHHHeEEeCCCCCCCCCcEEEEecCCCcee
Confidence 986432 125664 7888887 5 799999999999986 2 344667888885555332
Q ss_pred EEec---CCcEEE-eCCCCccc
Q 026689 161 GFTE---DGRDAR-AAGAGPIL 178 (235)
Q Consensus 161 g~~~---~G~~~~-~Gg~G~ll 178 (235)
+++. ||+++. +||+||+.
T Consensus 141 ~~vi~~~~g~l~~~agE~GH~~ 162 (316)
T TIGR00749 141 AHLIHQVDGRWVVLPGEGGHVD 162 (316)
T ss_pred eEEEEcCCCCEEECCCCccccc
Confidence 2344 788764 89999984
No 16
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=99.22 E-value=6.8e-11 Score=87.67 Aligned_cols=93 Identities=13% Similarity=0.172 Sum_probs=69.4
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEec
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi 102 (235)
.+||||+|+|+++++++|. +|+++...+.++. .+.+++++.+.+.+++ . ++.+|++|+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~---------~g~~~~~~~~~~~----~~~~~~~~~l~~~i~~----~-----~~~~i~Ig~ 59 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE---------TGKLADPLEVIPR----TNKEADAARLKKLIKK----Y-----QPDLIVIGL 59 (99)
T ss_pred cEEEEccCCCeEEEEEECC---------CCCEecCEEEEEe----cCcchHHHHHHHHHHH----h-----CCCEEEEeC
Confidence 3799999999999999998 8898876665432 1334555555555444 2 367899999
Q ss_pred cCCCCcc----HHHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 026689 103 SGVNHPT----DQQRILNWLRDIFPGNVRLYVHNDALAALA 139 (235)
Q Consensus 103 ~G~~~~~----~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~ 139 (235)
||+.+.. ...++.+.|++.++ .||.++||+++..+
T Consensus 60 pg~v~g~~~~~~~~~l~~~l~~~~~--~pv~~~nDa~st~~ 98 (99)
T smart00732 60 PLNMNGTASRETEEAFAELLKERFN--LPVVLVDERLATVY 98 (99)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHhhC--CcEEEEeCCccccc
Confidence 9996432 23788899999887 89999999997653
No 17
>PTZ00288 glucokinase 1; Provisional
Probab=99.03 E-value=2.7e-09 Score=98.59 Aligned_cols=145 Identities=17% Similarity=0.038 Sum_probs=90.6
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEe
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igig 101 (235)
+|+|++|+|||++|+++++..+. ++......... .+....+..+.++.+.++++.+.+... ..+.+...+++
T Consensus 26 ~~~~~~DiGgt~~R~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~iA 97 (405)
T PTZ00288 26 PIFVGCDVGGTNARVGFAREVQH------DDSGVHIIYVR-FNVTKTDIRELLEFFDEVLQKLKKNLS-FIQRVAAGAIS 97 (405)
T ss_pred CeEEEEEecCCceEEEEEeccCC------CCCceeEEEEe-cccccccHHHHHHHHHHHHHHHHhcCc-cccCcCeEEEE
Confidence 48999999999999999986211 11122222221 211124566777777777777665432 11456667899
Q ss_pred ccCCCCccHH-------------HHHHHHHHhhCCCCceEEEeCcHHHHHHhhc--------------------------
Q 026689 102 VSGVNHPTDQ-------------QRILNWLRDIFPGNVRLYVHNDALAALASGT-------------------------- 142 (235)
Q Consensus 102 i~G~~~~~~~-------------~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~-------------------------- 142 (235)
+||++..... .++... .|+. .++.+.||-.+.+++-.
T Consensus 98 vAGPV~~~~~~~~~~~~~~~~~lTNlpw~---i~~~-~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~l~~ 173 (405)
T PTZ00288 98 VPGPVTGGQLAGPFNNLKGIARLTDYPVE---LFPP-GRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSE 173 (405)
T ss_pred EeCceeCCEeeccccccccccccCCCCch---hcCC-CeEEEEEhHHHHhCcccccChhhcccccccccccccceeeecC
Confidence 9999642211 111111 2674 68999999998877521
Q ss_pred -------CCCCCEEEEEeCCCceeEEEecCCc-----EEEeCCCCcccc
Q 026689 143 -------MGKLHGCVLIAGTGTIAYGFTEDGR-----DARAAGAGPILG 179 (235)
Q Consensus 143 -------~g~~~gi~li~GTGs~~~g~~~~G~-----~~~~Gg~G~llg 179 (235)
.+..+.++|.+|||.+++ ++.+++ ...+||.||+.-
T Consensus 174 ~~~~g~~~~~~~~~Vlg~GTGLG~a-lli~~~l~~G~~~~agEgGHv~~ 221 (405)
T PTZ00288 174 GKPAGSVIGRGRCMVLAPGTGLGSS-LIHYVGVSDQYIVIPLECGHLSI 221 (405)
T ss_pred CCCCcccCCCCCEEEEEeccceeEE-EEECCeecCCcccccccccceee
Confidence 122345899999999765 555555 456899999743
No 18
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=98.95 E-value=2.1e-09 Score=96.36 Aligned_cols=135 Identities=19% Similarity=0.089 Sum_probs=87.7
Q ss_pred EEEEcCccceEEEEEeCccCCCCCCCCCC--EEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEec
Q 026689 25 LGLDGGTTSTVCICMPVISMSDSLPDPLP--VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (235)
Q Consensus 25 LgiD~GgT~t~~~l~d~~~~~~~~~~~g~--il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi 102 (235)
|.-|+|||++|+++++.. ... ++...+.++.++. ++.+++++++++......++..+++++
T Consensus 1 Lv~DIGGTn~Rlal~~~~--------~~~~~~~~~~~~~~~~~~---------s~~~~l~~~l~~~~~~~~~p~~~~iav 63 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPD--------GGPLQLIDIRRYPSADFP---------SFEDALADYLAELDAGGPEPDSACIAV 63 (316)
T ss_dssp EEEEEETTEEEEEEEECT--------CGG-EEEEEEEEEGCCCC---------HHHHHHHHHHHHTCHHHTCEEEEEEEE
T ss_pred CeEEeCcccEEEEEEEcC--------CCCccccccEEEecCCcC---------CHHHHHHHHHHhcccCCCccceEEEEE
Confidence 678999999999999972 333 4666666655552 345555555554322223567788999
Q ss_pred cCCCCcc-------HHHHHHHHHHhhCCCCceEEEeCcHHHHHHhh---------------cCCCCCEEEEEeCCCceeE
Q 026689 103 SGVNHPT-------DQQRILNWLRDIFPGNVRLYVHNDALAALASG---------------TMGKLHGCVLIAGTGTIAY 160 (235)
Q Consensus 103 ~G~~~~~-------~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~---------------~~g~~~gi~li~GTGs~~~ 160 (235)
+|+++.. .|..-.+.|++.|+. .+|.+.||-.+.+++- ......-+|+-+|||.+.+
T Consensus 64 AGPV~~~~~~lTN~~W~i~~~~l~~~lg~-~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~a 142 (316)
T PF02685_consen 64 AGPVRDGKVRLTNLPWTIDADELAQRLGI-PRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGVA 142 (316)
T ss_dssp SS-EETTCEE-SSSCCEEEHHHCHCCCT--TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSSEEEE
T ss_pred ecCccCCEEEecCCCccccHHHHHHHhCC-ceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEEE
Confidence 9996432 132235667777874 5799999999887752 0123457899999999887
Q ss_pred EEecCCc--EEEeCCCCcc
Q 026689 161 GFTEDGR--DARAAGAGPI 177 (235)
Q Consensus 161 g~~~~G~--~~~~Gg~G~l 177 (235)
.++.++. .....|.||.
T Consensus 143 ~l~~~~~~~~v~~sEgGH~ 161 (316)
T PF02685_consen 143 LLVPDGDGYYVLPSEGGHV 161 (316)
T ss_dssp EEEEETTEEEEEEE-GGGS
T ss_pred EEEecCCceEeCCCccccc
Confidence 7766553 3457899996
No 19
>PRK00047 glpK glycerol kinase; Provisional
Probab=98.80 E-value=2.4e-08 Score=94.59 Aligned_cols=75 Identities=23% Similarity=0.237 Sum_probs=62.3
Q ss_pred CCcEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC------CCCCccCCHHHHHHHHHHHHHHHHHHcCCCcc
Q 026689 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRS 93 (235)
Q Consensus 20 m~~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~------~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~ 93 (235)
|++|+||||+|+|++|++++|. +|+++...+.+ ...+.+++++++|+.+++++++++++++..++
T Consensus 3 m~~~~lgiD~GTts~Ka~l~d~---------~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~ 73 (498)
T PRK00047 3 MKKYILALDQGTTSSRAIIFDH---------DGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGISPD 73 (498)
T ss_pred ccCEEEEEecCCCceEEEEECC---------CCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCChh
Confidence 4468999999999999999998 99999987643 22344789999999999999999999888777
Q ss_pred cceeeEEecc
Q 026689 94 AVRAVCLAVS 103 (235)
Q Consensus 94 ~i~~igigi~ 103 (235)
+|.+|++..-
T Consensus 74 ~I~~Igis~~ 83 (498)
T PRK00047 74 QIAAIGITNQ 83 (498)
T ss_pred HeeEEEEecC
Confidence 8988755433
No 20
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=98.79 E-value=3.7e-08 Score=84.66 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=60.7
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCC------CCccCCHHHHHHHHHHHHHHHHHHcCCCcccce
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 96 (235)
|+||||+|+|++|++++|. +|+++...+.+.. ...+++++++|+.+++++++++++++..+.+|.
T Consensus 1 y~lgiDiGTts~K~~l~d~---------~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~ 71 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDE---------DGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDPEQIK 71 (245)
T ss_dssp EEEEEEECSSEEEEEEEET---------TSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCGGGEE
T ss_pred CEEEEEEcccceEEEEEeC---------CCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCcccceeE
Confidence 7899999999999999998 9999998876422 334689999999999999999999988888999
Q ss_pred eeEEeccC
Q 026689 97 AVCLAVSG 104 (235)
Q Consensus 97 ~igigi~G 104 (235)
+|++..-+
T Consensus 72 aI~is~~~ 79 (245)
T PF00370_consen 72 AIGISGQG 79 (245)
T ss_dssp EEEEEE-S
T ss_pred EEEecccc
Confidence 97664433
No 21
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=98.78 E-value=3.4e-08 Score=94.13 Aligned_cols=74 Identities=19% Similarity=0.185 Sum_probs=62.1
Q ss_pred CCcEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCC--------CCCccCCHHHHHHHHHHHHHHHHHHcCCC
Q 026689 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC--------SNHNSVGEDAARETIEKVMADALLKSGSN 91 (235)
Q Consensus 20 m~~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~--------~~~~~~~~~~~~~~i~~~i~~~l~~~~~~ 91 (235)
||+|+||||+|+|++|++++|. +|++++..+.+. ..+.+++++++|+.+++++++++++++.+
T Consensus 1 ~m~~~lgID~GTts~Ka~l~d~---------~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~ 71 (520)
T PRK10939 1 SMSYLMALDAGTGSIRAVIFDL---------NGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIP 71 (520)
T ss_pred CCcEEEEEecCCCceEEEEECC---------CCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCC
Confidence 4569999999999999999999 999999875431 23457899999999999999999888877
Q ss_pred cccceeeEEec
Q 026689 92 RSAVRAVCLAV 102 (235)
Q Consensus 92 ~~~i~~igigi 102 (235)
+.+|.+|++..
T Consensus 72 ~~~I~aI~~s~ 82 (520)
T PRK10939 72 ASDIAAVSATS 82 (520)
T ss_pred ccceEEEEEEC
Confidence 77898876543
No 22
>PRK04123 ribulokinase; Provisional
Probab=98.77 E-value=3.5e-08 Score=94.59 Aligned_cols=74 Identities=22% Similarity=0.210 Sum_probs=62.2
Q ss_pred CCcEEEEEEcCccceEEEEEe-CccCCCCCCCCCCEEEEEEeCCC------------CCccCCHHHHHHHHHHHHHHHHH
Q 026689 20 GREVILGLDGGTTSTVCICMP-VISMSDSLPDPLPVLARAAAGCS------------NHNSVGEDAARETIEKVMADALL 86 (235)
Q Consensus 20 m~~~~LgiD~GgT~t~~~l~d-~~~~~~~~~~~g~il~~~~~~~~------------~~~~~~~~~~~~~i~~~i~~~l~ 86 (235)
||+|+||||+|+|++|++|+| . +|++++..+.+.. .+.+++|+++|+.++++++++++
T Consensus 1 ~~~~~lgiD~GTts~Ka~l~d~~---------~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~ 71 (548)
T PRK04123 1 MMAYVIGLDFGTDSVRALLVDCA---------TGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLK 71 (548)
T ss_pred CCcEEEEEecCCCceEEEEEECC---------CCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHH
Confidence 667999999999999999999 6 8999988765432 23578999999999999999999
Q ss_pred HcCCCcccceeeEEec
Q 026689 87 KSGSNRSAVRAVCLAV 102 (235)
Q Consensus 87 ~~~~~~~~i~~igigi 102 (235)
+++.++.+|.+|++.-
T Consensus 72 ~~~~~~~~I~aIgis~ 87 (548)
T PRK04123 72 EAGVDPAAVVGIGVDF 87 (548)
T ss_pred HcCCChhhEEEEEEec
Confidence 8888777898876543
No 23
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=98.74 E-value=2.6e-07 Score=84.06 Aligned_cols=133 Identities=20% Similarity=0.165 Sum_probs=90.4
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHH---HHHHHHHHHcCCCcccceeeEE
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIE---KVMADALLKSGSNRSAVRAVCL 100 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~---~~i~~~l~~~~~~~~~i~~igi 100 (235)
+|.|..|+|+||++|++. +++++.+...++.... .+++.+++++. +.+.+++.+.++..++|.+| .
T Consensus 2 il~in~Gsts~k~alf~~---------~~~~~~~~~~~~~~~~-~~~~~~~~q~~~r~~~i~~~l~~~~~~~~~i~av-~ 70 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFED---------ERPLFEETLRHSVEEL-GRFKNVIDQFEFRKQVILQFLEEHGISISKLDAV-V 70 (351)
T ss_pred EEEEecCchhheEEEEeC---------CCceeeeeecCCHHHh-cccccHHHHHHHHHHHHHHHHHHcCCCcccccEE-E
Confidence 799999999999999998 8887776655442221 24446667777 78888888887766778888 6
Q ss_pred eccCCCCccH--------------------------HHHHHHHHHhhCCCCceEEEeCc---------HHHHHHhhc---
Q 026689 101 AVSGVNHPTD--------------------------QQRILNWLRDIFPGNVRLYVHND---------ALAALASGT--- 142 (235)
Q Consensus 101 gi~G~~~~~~--------------------------~~~l~~~l~~~~~~~~~v~v~ND---------a~~a~~~~~--- 142 (235)
+-+|+..+-. ...+...+.+.++ .|..+.|| +++..+.++
T Consensus 71 ~RgG~~~~v~Gg~~~v~~~~~~~l~~~~~~~~~hn~~~~~~~~~~~~~~--~p~~vfDt~fh~~~~~~a~~~alpe~~Rr 148 (351)
T TIGR02707 71 GRGGLLKPIPGGTYLVNEAMLEDLKSGKRGEHASNLGAIIANELADELN--IPAYIVDPVVVDEMEDVARISGLPEIERK 148 (351)
T ss_pred ECCCCCceecceeEEECHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHcC--CCEEEcCChhhhcChHHHHHhccchhhhh
Confidence 7777754211 1233444444554 77789999 555433211
Q ss_pred --------------------CCCC--CEEEEEeCCCceeEEEecCCcEEE
Q 026689 143 --------------------MGKL--HGCVLIAGTGTIAYGFTEDGRDAR 170 (235)
Q Consensus 143 --------------------~g~~--~gi~li~GTGs~~~g~~~~G~~~~ 170 (235)
++.+ +.+++.+|||+++ +++.||+...
T Consensus 149 ygfHgls~~~v~~~~~~~~g~~~~~~~~I~~hLGtGig~-~ai~~Gk~vd 197 (351)
T TIGR02707 149 SIFHALNQKAVARRIAKELGKRYEEMNLIVAHMGGGISV-AAHRKGRVID 197 (351)
T ss_pred hchhhhhHHHHHHHHHHHcCCCcccCCEEEEEeCCCcee-eeEECCEEEE
Confidence 2223 7999999999965 5668998864
No 24
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=98.72 E-value=6.8e-08 Score=91.76 Aligned_cols=76 Identities=24% Similarity=0.232 Sum_probs=63.4
Q ss_pred CCcEEEEEEcCccceEEEEEeCccCCCCCCCC-CCEEEEEEeCCC------CCccCCHHHHHHHHHHHHHHHHHHcCCCc
Q 026689 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDP-LPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNR 92 (235)
Q Consensus 20 m~~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~-g~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~ 92 (235)
|+.|+||||+|+|++|++++|. + +++++..+.... .+.+++++++|+.++++++++++++.+++
T Consensus 2 ~~~~~lgIDiGTt~~Kavl~d~---------~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~~~~ 72 (502)
T COG1070 2 MMKYVLGIDIGTTSVKAVLFDE---------DGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESKIDP 72 (502)
T ss_pred CccEEEEEEcCCCcEEEEEEeC---------CCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcccCh
Confidence 5679999999999999999999 7 888888766422 23478999999999999999999988888
Q ss_pred ccceeeEEeccCCC
Q 026689 93 SAVRAVCLAVSGVN 106 (235)
Q Consensus 93 ~~i~~igigi~G~~ 106 (235)
.+|.+|++ +|..
T Consensus 73 ~~I~aI~i--s~~~ 84 (502)
T COG1070 73 DAIAAIGI--SGQG 84 (502)
T ss_pred hhceEEEE--eccc
Confidence 88998754 5553
No 25
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=98.69 E-value=4.6e-08 Score=90.72 Aligned_cols=74 Identities=22% Similarity=0.264 Sum_probs=64.8
Q ss_pred CcEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC------CCCCccCCHHHHHHHHHHHHHHHHHHcCCCccc
Q 026689 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (235)
Q Consensus 21 ~~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~------~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 94 (235)
++|+++||.|+|++|++++|. +|++++..+.+ .+.+.|+||.++|++...++++++.++++.+.+
T Consensus 4 ~~yIlAiDqGTTssRaivfd~---------~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~ 74 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE---------DGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGE 74 (499)
T ss_pred ccEEEEEecCCcceeEEEECC---------CCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 459999999999999999999 99999987654 345669999999999999999999999999999
Q ss_pred ceeeEEeccCC
Q 026689 95 VRAVCLAVSGV 105 (235)
Q Consensus 95 i~~igigi~G~ 105 (235)
|.+| |++..
T Consensus 75 iaaI--GITNQ 83 (499)
T COG0554 75 IAAI--GITNQ 83 (499)
T ss_pred eEEE--Eeecc
Confidence 9986 44554
No 26
>PRK13318 pantothenate kinase; Reviewed
Probab=98.68 E-value=2.1e-06 Score=74.86 Aligned_cols=123 Identities=20% Similarity=0.132 Sum_probs=75.3
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEec-
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV- 102 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi- 102 (235)
+|+||+|+|++|++++|. ++++.+.+.++... .+++++. +.+.++++..+.+..++.+|+++.
T Consensus 2 iL~IDIGnT~iK~al~d~----------g~i~~~~~~~t~~~--~~~~~~~----~~l~~l~~~~~~~~~~i~~I~issV 65 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG----------GKLVAHWRISTDSR--RTADEYG----VWLKQLLGLSGLDPEDITGIIISSV 65 (258)
T ss_pred EEEEEECCCcEEEEEEEC----------CEEEEEEEEeCCCC--CCHHHHH----HHHHHHHHHcCCCcccCceEEEEEe
Confidence 799999999999999984 56777666654322 3455544 444555555555445688888877
Q ss_pred -cCCCCccHHHHHHHHHHhhCC------------CCceEEEeCc--------HHHHHHhhcCCCCCEEEEEeCCCceeEE
Q 026689 103 -SGVNHPTDQQRILNWLRDIFP------------GNVRLYVHND--------ALAALASGTMGKLHGCVLIAGTGTIAYG 161 (235)
Q Consensus 103 -~G~~~~~~~~~l~~~l~~~~~------------~~~~v~v~ND--------a~~a~~~~~~g~~~gi~li~GTGs~~~g 161 (235)
|+.. ..+...+++.+. ...|+.++|| +++.++.+... .+.+++-+||++..-.
T Consensus 66 vp~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~y~np~~lG~DR~a~~~aa~~~~~-~~~ivid~GTA~t~d~ 139 (258)
T PRK13318 66 VPSVM-----HSLERMCRKYFNIEPLVVVGPGVKTGINIKVDNPKEVGADRIVNAVAAYELYG-GPLIVVDFGTATTFDV 139 (258)
T ss_pred cCchH-----HHHHHHHHHHhCCCCeEEECCCcCCCCceecCChhhcchHHHHHHHHHHHHcC-CCEEEEEcCCceEEEE
Confidence 3332 122222222111 1267888898 44444333333 3799999999986544
Q ss_pred EecCCcE
Q 026689 162 FTEDGRD 168 (235)
Q Consensus 162 ~~~~G~~ 168 (235)
++.+|++
T Consensus 140 v~~~g~~ 146 (258)
T PRK13318 140 VSAKGEY 146 (258)
T ss_pred EcCCCcE
Confidence 4466654
No 27
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=98.66 E-value=1e-07 Score=91.24 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=60.5
Q ss_pred EEEEEEcCccceEEEEEe-CccCCCCCCCCCCEEEEEEeCC-----------------CCCccCCHHHHHHHHHHHHHHH
Q 026689 23 VILGLDGGTTSTVCICMP-VISMSDSLPDPLPVLARAAAGC-----------------SNHNSVGEDAARETIEKVMADA 84 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d-~~~~~~~~~~~g~il~~~~~~~-----------------~~~~~~~~~~~~~~i~~~i~~~ 84 (235)
|+||||+|+|++|++|+| . +|++++..+.+. ..+.|++|+++|+.++++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~---------~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~ 72 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVA---------TGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTV 72 (536)
T ss_pred eEEEEecCCCceEEEEEECC---------CCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHH
Confidence 799999999999999999 8 899998876532 2345899999999999999999
Q ss_pred HHHcCCCcccceeeEEec
Q 026689 85 LLKSGSNRSAVRAVCLAV 102 (235)
Q Consensus 85 l~~~~~~~~~i~~igigi 102 (235)
+++++.++++|.+|++.-
T Consensus 73 ~~~~~~~~~~I~aI~~s~ 90 (536)
T TIGR01234 73 LAELGVDPADVVGIGVDF 90 (536)
T ss_pred HHHcCCCHHHEEEEEEec
Confidence 999887777898876543
No 28
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=98.66 E-value=1.3e-07 Score=89.89 Aligned_cols=73 Identities=19% Similarity=0.171 Sum_probs=60.2
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCC------CCCccCCHHHHHHHHHHHHHHHHHHcCCCcc--
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC------SNHNSVGEDAARETIEKVMADALLKSGSNRS-- 93 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~------~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~-- 93 (235)
.|+||||+|+|++|++|+|. +|++++..+.+. .++.+++++++|+.+++++++++++.+..+.
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~---------~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~~ 72 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDE---------KGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLREKGPSF 72 (504)
T ss_pred cEEEEEecCCCceEEEEECC---------CCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 38999999999999999998 999998876642 2344799999999999999999998876665
Q ss_pred cceeeEEecc
Q 026689 94 AVRAVCLAVS 103 (235)
Q Consensus 94 ~i~~igigi~ 103 (235)
+|.+|++..-
T Consensus 73 ~I~aIgis~q 82 (504)
T PTZ00294 73 KIKAIGITNQ 82 (504)
T ss_pred ceEEEEeecC
Confidence 6888755443
No 29
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=98.62 E-value=8.3e-07 Score=78.16 Aligned_cols=137 Identities=21% Similarity=0.194 Sum_probs=87.3
Q ss_pred CcEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEE
Q 026689 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (235)
Q Consensus 21 ~~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igi 100 (235)
+...|.-|+|||+.|++++... +.++.......+.++. ++.+++++.+.+. ....++..++
T Consensus 5 ~~p~LvgDIGGTnaRfaLv~~a--------~~~~~~~~~~~~~dyp---------sle~av~~yl~~~--~~~~~~~a~~ 65 (320)
T COG0837 5 GYPRLVGDIGGTNARFALVEIA--------PAEPLQAETYACADYP---------SLEEAVQDYLSEH--TAVAPRSACF 65 (320)
T ss_pred CCceEEEecCCcceEEEEeccC--------CCCccccceecccCcC---------CHHHHHHHHHHHh--hccCccceEE
Confidence 3345666999999999997752 3444433333344332 3455555555544 1224556779
Q ss_pred eccCCCCcc-------HHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc---------------CCCCCEEEEEeCCCce
Q 026689 101 AVSGVNHPT-------DQQRILNWLRDIFPGNVRLYVHNDALAALASGT---------------MGKLHGCVLIAGTGTI 158 (235)
Q Consensus 101 gi~G~~~~~-------~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~---------------~g~~~gi~li~GTGs~ 158 (235)
+++|+.... +|..=.+.+++.++. ..+.+.||-.+.+++.. ....+-+++-.|||.+
T Consensus 66 AiAgPv~gd~v~lTN~~W~~s~~~~r~~Lgl-~~v~liNDF~A~A~Ai~~l~~~dl~qigg~~~~~~a~~avlGPGTGLG 144 (320)
T COG0837 66 AIAGPIDGDEVRLTNHDWVFSIARMRAELGL-DHLSLINDFAAQALAIPRLGAEDLEQIGGGKPEPNAPRAVLGPGTGLG 144 (320)
T ss_pred EEecCccCCEEeeecCcccccHHHHHHhcCC-CcEEEechHHHHHhhccccCHHHHHHhcCCCCCCCCceEEEcCCCCcc
Confidence 999996543 244345566666775 67999999998766521 1123457888999999
Q ss_pred eEEEecCCcEE--EeCCCCcc
Q 026689 159 AYGFTEDGRDA--RAAGAGPI 177 (235)
Q Consensus 159 ~~g~~~~G~~~--~~Gg~G~l 177 (235)
.++++..+.-. -.||=||.
T Consensus 145 Va~Lv~~~~~w~~lp~EGGHv 165 (320)
T COG0837 145 VAGLVPNGGGWIPLPGEGGHV 165 (320)
T ss_pred eEEEEecCCeeEeccCCCccc
Confidence 88888765433 36888885
No 30
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=98.62 E-value=1.8e-07 Score=88.49 Aligned_cols=74 Identities=22% Similarity=0.234 Sum_probs=61.8
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCC------CCccCCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAV 95 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i 95 (235)
+|+||||+|+|++|++++|. +|++++..+.+.. .+.+++++++|+.++++++++++++++++++|
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~---------~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i 71 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDK---------DGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGIKPDDI 71 (493)
T ss_pred CeEEEEecCCCceEEEEECC---------CCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCChhhe
Confidence 48999999999999999998 9999998876422 23367999999999999999999988877789
Q ss_pred eeeEEeccC
Q 026689 96 RAVCLAVSG 104 (235)
Q Consensus 96 ~~igigi~G 104 (235)
.+|+++.-+
T Consensus 72 ~aIgis~~~ 80 (493)
T TIGR01311 72 AAIGITNQR 80 (493)
T ss_pred eEEEEecCc
Confidence 887664443
No 31
>PLN02295 glycerol kinase
Probab=98.60 E-value=1.8e-07 Score=89.06 Aligned_cols=72 Identities=19% Similarity=0.190 Sum_probs=59.9
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCC------CCccCCHHHHHHHHHHHHHHHHHHcCCCccc--
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSA-- 94 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~-- 94 (235)
|+||||+|+|++|++|+|. +|++++..+.+.. .+.|++|+++|+.+++++++++++++..+++
T Consensus 1 ~vlgID~GTts~Ka~l~d~---------~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~ 71 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDR---------DARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVD 71 (512)
T ss_pred CEEEEecCCCceEEEEECC---------CCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 5899999999999999998 9999988765422 3458999999999999999999998877766
Q ss_pred --ceeeEEeccCC
Q 026689 95 --VRAVCLAVSGV 105 (235)
Q Consensus 95 --i~~igigi~G~ 105 (235)
|.+| |++|.
T Consensus 72 ~~i~aI--g~s~q 82 (512)
T PLN02295 72 SGLKAI--GITNQ 82 (512)
T ss_pred cceEEE--EEecC
Confidence 5776 44554
No 32
>PLN02362 hexokinase
Probab=98.60 E-value=4.7e-06 Score=79.17 Aligned_cols=134 Identities=14% Similarity=0.056 Sum_probs=83.5
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEE--EEeC-CCCCccCCHHHHHHHHHHHHHHHHHHcCCCc------
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLAR--AAAG-CSNHNSVGEDAARETIEKVMADALLKSGSNR------ 92 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~--~~~~-~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~------ 92 (235)
..||++|.|||+.|++++...++ ....+.+ .+.+ +........+++++-|.+.+.+++.+.....
T Consensus 95 G~fLAlDlGGTNfRV~~V~L~g~------~~~~~~~~~~~~~Ip~~l~~~~~~eLFd~IA~~i~~fl~~~~~~~~~~~~~ 168 (509)
T PLN02362 95 GTYYALDLGGTNFRVLRVQLGGQ------RSSILSQDVERHPIPQHLMNSTSEVLFDFIASSLKQFVEKEENGSEFSQVR 168 (509)
T ss_pred eeEEEEecCCceEEEEEEEecCC------CcceeeceeEEEecChhhccCCHHHHHHHHHHHHHHHHHhcCccccccccc
Confidence 47899999999999999998321 1122222 1111 2222234678899999999999998764321
Q ss_pred ccceeeEEeccCCCCcc-------H--------------HHHHHHHHHhh-CCCCceEEEeCcHHHHHHhhc-CCCCCEE
Q 026689 93 SAVRAVCLAVSGVNHPT-------D--------------QQRILNWLRDI-FPGNVRLYVHNDALAALASGT-MGKLHGC 149 (235)
Q Consensus 93 ~~i~~igigi~G~~~~~-------~--------------~~~l~~~l~~~-~~~~~~v~v~NDa~~a~~~~~-~g~~~gi 149 (235)
.-..++.+++|=-...- + ...|.+.|.++ ++. ..+.|.||....+++.+ ......+
T Consensus 169 ~l~LGfTFSFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al~r~~l~v-~v~AlvNDTVgTL~a~aY~~~~~~i 247 (509)
T PLN02362 169 RRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGALNRRGLDM-RVAALVNDTVGTLALGHYHDPDTVA 247 (509)
T ss_pred cccceeEEeeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHHHHcCCCc-EEEEEEEcCHHHHHhhhcCCCCceE
Confidence 12245555555443211 0 13455555443 332 46789999998887654 3333457
Q ss_pred EEEeCCCceeEEE
Q 026689 150 VLIAGTGTIAYGF 162 (235)
Q Consensus 150 ~li~GTGs~~~g~ 162 (235)
-+|+|||++++.+
T Consensus 248 G~IlGTGtNacY~ 260 (509)
T PLN02362 248 AVIIGTGTNACYL 260 (509)
T ss_pred EEEEECCccceEe
Confidence 8999999997643
No 33
>PLN02914 hexokinase
Probab=98.60 E-value=4.6e-06 Score=78.85 Aligned_cols=169 Identities=16% Similarity=0.089 Sum_probs=103.2
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEe--C-CCCCccCCHHHHHHHHHHHHHHHHHHcCC----Cccc
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAA--G-CSNHNSVGEDAARETIEKVMADALLKSGS----NRSA 94 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~--~-~~~~~~~~~~~~~~~i~~~i~~~l~~~~~----~~~~ 94 (235)
..||++|.|||+.|+.++...++ .+.+....+. + +.....-..+++++-|.+.+.+++++... +..+
T Consensus 95 G~fLAlDlGGTNfRV~~V~L~g~------~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~~~~~ 168 (490)
T PLN02914 95 GLFYALDLGGTNFRVLRVQLGGK------DERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKFHLPEGR 168 (490)
T ss_pred eEEEEEecCCceEEEEEEEecCC------CCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhccccccCCccc
Confidence 37999999999999999998321 2223332221 1 22222235688999999999999987541 1111
Q ss_pred --ceeeEEeccCCCCcc--------------------H-HHHHHHHHHhh-CCCCceEEEeCcHHHHHHhhc-CCCCCEE
Q 026689 95 --VRAVCLAVSGVNHPT--------------------D-QQRILNWLRDI-FPGNVRLYVHNDALAALASGT-MGKLHGC 149 (235)
Q Consensus 95 --i~~igigi~G~~~~~--------------------~-~~~l~~~l~~~-~~~~~~v~v~NDa~~a~~~~~-~g~~~gi 149 (235)
..++.+++|=-...- + ...|.+.|+++ ++. ..+.|.||....+++.+ .....-+
T Consensus 169 ~l~LGfTFSFP~~Q~si~~g~Li~WTKGF~~~gv~G~DVv~lL~~Al~r~~l~v-~v~AivNDTVGTL~a~aY~~~~~~i 247 (490)
T PLN02914 169 KREIGFTFSFPVKQTSIDSGILMKWTKGFAVSGTAGKDVVACLNEAMERQGLDM-RVSALVNDTVGTLAGARYWDDDVMV 247 (490)
T ss_pred cccceeeEeeeeecCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCc-eEEEEEEcCHHHHHhhhcCCCCceE
Confidence 234445544432110 0 23566666554 342 56789999998887654 3334578
Q ss_pred EEEeCCCceeEEEec-------------CCcEEEeCCCCccccc-------------------------cchHHHHHHHH
Q 026689 150 VLIAGTGTIAYGFTE-------------DGRDARAAGAGPILGD-------------------------WGSGYGIAAQA 191 (235)
Q Consensus 150 ~li~GTGs~~~g~~~-------------~G~~~~~Gg~G~llgd-------------------------~gSg~~ig~~a 191 (235)
-+|+|||++++.+-. +++...--|||.+ ++ .-||.|+|.-.
T Consensus 248 GlIlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F-~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEiv 326 (490)
T PLN02914 248 AVILGTGTNACYVERTDAIPKLQGQKSSSGRTIINTEWGAF-SDGLPLTEFDREMDAASINPGEQIFEKTISGMYLGEIV 326 (490)
T ss_pred EEEEECCeeeEEEeecccccccccCCCCCceEEEecccccc-CCCCCCChHHHHHhhCCCCCCcchhhhHHhhhhHHHHH
Confidence 999999999764421 1223344577764 32 25799999766
Q ss_pred HHHHHHH
Q 026689 192 LTAVIRA 198 (235)
Q Consensus 192 l~~~~~~ 198 (235)
+..+++.
T Consensus 327 RlvLl~l 333 (490)
T PLN02914 327 RRVLLKM 333 (490)
T ss_pred HHHHHHH
Confidence 6655543
No 34
>PLN02405 hexokinase
Probab=98.59 E-value=7.6e-06 Score=77.55 Aligned_cols=134 Identities=16% Similarity=0.085 Sum_probs=84.5
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEe--C-CCCCccCCHHHHHHHHHHHHHHHHHHcCCC----c--
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAA--G-CSNHNSVGEDAARETIEKVMADALLKSGSN----R-- 92 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~--~-~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~----~-- 92 (235)
..||++|.|||+.|+..+...++ ++..+.+.+. + +........+++++-|.+.+.+++.+.+.. +
T Consensus 95 G~flAlDlGGTNfRV~~V~L~g~------~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~~fl~~~~~~~~~~~~~ 168 (497)
T PLN02405 95 GLFYALDLGGTNFRVLRVLLGGK------DGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALAKFVATEGEDFHLPPGR 168 (497)
T ss_pred eeEEEEecCCceEEEEEEEEcCC------CCceeEEEEEEeecChhhccCCHHHHHHHHHHHHHHHHHhcccccccCccc
Confidence 37899999999999999998321 1223332211 1 222223467889999999999999776421 1
Q ss_pred ccceeeEEeccCCCCcc-------H--------------HHHHHHHHHhh-CCCCceEEEeCcHHHHHHhhc-CCCCCEE
Q 026689 93 SAVRAVCLAVSGVNHPT-------D--------------QQRILNWLRDI-FPGNVRLYVHNDALAALASGT-MGKLHGC 149 (235)
Q Consensus 93 ~~i~~igigi~G~~~~~-------~--------------~~~l~~~l~~~-~~~~~~v~v~NDa~~a~~~~~-~g~~~gi 149 (235)
.-..++.+++|=-...- + ...|.+.|+++ ++. ..+.+.||....+++.+ ...+.-+
T Consensus 169 ~l~LGfTFSFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al~r~~l~v-~v~AlvNDTVGTL~a~aY~~~~~~i 247 (497)
T PLN02405 169 QRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAMERVGLDM-RVSALVNDTIGTLAGGRYYNPDVVA 247 (497)
T ss_pred ccccceeEeeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCc-eEEEEEecCHHHHHHhhcCCCCceE
Confidence 12234555555432211 0 13455666543 342 56899999998887654 3334568
Q ss_pred EEEeCCCceeEEE
Q 026689 150 VLIAGTGTIAYGF 162 (235)
Q Consensus 150 ~li~GTGs~~~g~ 162 (235)
-+|+|||++++.+
T Consensus 248 G~IlGTGtNacY~ 260 (497)
T PLN02405 248 AVILGTGTNAAYV 260 (497)
T ss_pred EEEEeCCeeeEEE
Confidence 9999999997654
No 35
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=98.58 E-value=8.4e-08 Score=90.13 Aligned_cols=73 Identities=15% Similarity=0.262 Sum_probs=63.5
Q ss_pred EEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCC------CCccCCHHHHHHHHHHHHHHHHHHcCCCcccceee
Q 026689 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (235)
Q Consensus 25 LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~i 98 (235)
||||+|+|++|++|+|. +|+++.+.+.+.. ++.+++++++|+.+.+++++++++++..+.+|.+|
T Consensus 1 lgIDiGtt~ik~~l~d~---------~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gI 71 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE---------QGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMGQDIKGI 71 (481)
T ss_pred CceeecCcceEEEEECC---------CCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEE
Confidence 58999999999999999 9999988876532 22368899999999999999999988888889999
Q ss_pred EEe--ccCCC
Q 026689 99 CLA--VSGVN 106 (235)
Q Consensus 99 gig--i~G~~ 106 (235)
+++ .+|+.
T Consensus 72 gvs~~~~g~v 81 (481)
T TIGR01312 72 GISGQMHGLV 81 (481)
T ss_pred EEecCCceeE
Confidence 998 88876
No 36
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=98.57 E-value=2.6e-07 Score=88.60 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=60.1
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC------CCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccce
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~------~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 96 (235)
++||||+|||++|++|+|. +|+++++.+.+ ...+.+++|+++|+.+++++++++++.+..+++|.
T Consensus 1 ~~lgID~GTts~Ka~l~d~---------~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~ 71 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDS---------TGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDPNSVK 71 (541)
T ss_pred CEEEEEecCcCEEEEEEcC---------CCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCChhheE
Confidence 3799999999999999998 99999987633 22345899999999999999999998887777899
Q ss_pred eeEEec
Q 026689 97 AVCLAV 102 (235)
Q Consensus 97 ~igigi 102 (235)
+|+++.
T Consensus 72 ~Igis~ 77 (541)
T TIGR01315 72 GIGFDA 77 (541)
T ss_pred EEEecc
Confidence 877654
No 37
>PTZ00107 hexokinase; Provisional
Probab=98.55 E-value=1.9e-05 Score=74.43 Aligned_cols=171 Identities=13% Similarity=0.088 Sum_probs=102.6
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCE-EEEEEeC-CCCC---------ccCCHHHHHHHHHHHHHHHHHHcCC
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPV-LARAAAG-CSNH---------NSVGEDAARETIEKVMADALLKSGS 90 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~i-l~~~~~~-~~~~---------~~~~~~~~~~~i~~~i~~~l~~~~~ 90 (235)
..||++|.|||+.|++++...+ ++.. +.+.... +... .....+++++.|.+.+.+++.+...
T Consensus 74 G~fLAlDlGGTN~RV~~V~L~g-------~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~~~ 146 (464)
T PTZ00107 74 GVYYAIDFGGTNFRAVRVSLRG-------GGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEENGD 146 (464)
T ss_pred ceEEEEecCCceEEEEEEEeCC-------CCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhccc
Confidence 4689999999999999999832 2222 1111111 1000 0125778999999999999987641
Q ss_pred --Cc-c-cceeeEEeccCCCCc--------------------------cHHHHHHHHHHhh-CCCCceEEEeCcHHHHHH
Q 026689 91 --NR-S-AVRAVCLAVSGVNHP--------------------------TDQQRILNWLRDI-FPGNVRLYVHNDALAALA 139 (235)
Q Consensus 91 --~~-~-~i~~igigi~G~~~~--------------------------~~~~~l~~~l~~~-~~~~~~v~v~NDa~~a~~ 139 (235)
.. . -..++.+++|=-... .-...|.+.|+++ ++. ..+.|.||....++
T Consensus 147 ~~~~~~~l~lGfTFSFP~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~v-~v~AivNDTVgTL~ 225 (464)
T PTZ00107 147 PEDLNKPVPVGFTFSFPCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVPA-NVVAVLNDTVGTLI 225 (464)
T ss_pred cccccccccceeEEeeeeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCCc-eEEEEEEcCHHHHH
Confidence 11 1 123444544433211 1123455566543 342 57899999998887
Q ss_pred hhc-CC----CCCEEEEEeCCCceeEEEec------CCcEEEeCCCCccccc-------------------------cch
Q 026689 140 SGT-MG----KLHGCVLIAGTGTIAYGFTE------DGRDARAAGAGPILGD-------------------------WGS 183 (235)
Q Consensus 140 ~~~-~g----~~~gi~li~GTGs~~~g~~~------~G~~~~~Gg~G~llgd-------------------------~gS 183 (235)
+.+ .. ...-+-+|+|||++++.+-. ......--|||.+ +. .-|
T Consensus 226 a~ay~~~~~~~~~~iGlIlGTG~NacY~E~~~~~~~~~~~iINtEwG~F-~~~lp~T~~D~~lD~~S~npg~Q~fEKmiS 304 (464)
T PTZ00107 226 SCAYQKPKNTPPCQVGVIIGTGSNACYFEPEVSAYGYAGTPINMECGNF-DSKLPITPYDLEMDWYTPNRGRQQFEKMIS 304 (464)
T ss_pred HHHhcCcCCCCCceEEEEEeccccceeeehhhccCCCCcEEEEeecccc-CCCCCCChHHHHHhhcCCCCCcCchhhHHh
Confidence 654 22 33578899999999765432 1223344566653 21 258
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 026689 184 GYGIAAQALTAVIRAYDG 201 (235)
Q Consensus 184 g~~ig~~al~~~~~~~dg 201 (235)
|.|||.-++..+++.++.
T Consensus 305 G~YLGEi~Rlvl~~l~~~ 322 (464)
T PTZ00107 305 GAYLGEISRRLIVHLLQL 322 (464)
T ss_pred hhhHHHHHHHHHHHHHhc
Confidence 999998777766665543
No 38
>PRK13321 pantothenate kinase; Reviewed
Probab=98.52 E-value=4.1e-06 Score=72.98 Aligned_cols=147 Identities=18% Similarity=0.112 Sum_probs=84.2
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEecc
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~ 103 (235)
+|+||+|+|++|+++++. + +++.+.+.++... .+++++...+.+. +.+.+..++++.+++++.
T Consensus 2 iL~IDIGnT~ik~gl~~~---------~-~i~~~~~~~T~~~--~~~~~~~~~l~~l----~~~~~~~~~~i~~i~vss- 64 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDG---------D-RLLRSFRLPTDKS--RTSDELGILLLSL----FRHAGLDPEDIRAVVISS- 64 (256)
T ss_pred EEEEEECCCeEEEEEEEC---------C-EEEEEEEEecCCC--CCHHHHHHHHHHH----HHHcCCChhhCCeEEEEe-
Confidence 699999999999999996 5 6776666544322 4566665555554 444455555788877665
Q ss_pred CCCCccHHHHHHHHHHhhCC---------------C--CceEEEeCcHHHHHHhh--cCCCCCEEEEEeCCCceeEEEec
Q 026689 104 GVNHPTDQQRILNWLRDIFP---------------G--NVRLYVHNDALAALASG--TMGKLHGCVLIAGTGTIAYGFTE 164 (235)
Q Consensus 104 G~~~~~~~~~l~~~l~~~~~---------------~--~~~v~v~NDa~~a~~~~--~~g~~~gi~li~GTGs~~~g~~~ 164 (235)
+. +.....+.+.+.+.++ + ..|..+.+|-.++++++ ....++.+++-+||-+-.-.+..
T Consensus 65 -Vv-p~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~y~~P~~lG~DR~a~~~aa~~~~~~~~~lvid~GTA~T~d~v~~ 142 (256)
T PRK13321 65 -VV-PPLNYSLESACKRYFGIKPLFVGPGIKTGLKIRYDNPREVGADRIVNAVAARRLYPDRNLIVVDFGTATTFDCVSG 142 (256)
T ss_pred -ec-ccHHHHHHHHHHHHhCCCeEEECCCCCCCcccccCChhhccHHHHHHHHHHHHHcCCCCEEEEECCCceEEEEEcC
Confidence 43 3322233333333221 0 14667889955544433 23324899999999774333333
Q ss_pred CCcEEEeCCCCccccccchHHHHHHHHHHHHHH
Q 026689 165 DGRDARAAGAGPILGDWGSGYGIAAQALTAVIR 197 (235)
Q Consensus 165 ~G~~~~~Gg~G~llgd~gSg~~ig~~al~~~~~ 197 (235)
+|+.. ||+ -.-|..+.+++|.....
T Consensus 143 ~g~~~--GG~------I~PG~~l~~~aL~~~ta 167 (256)
T PRK13321 143 KGEYL--GGA------ICPGILISMEALSQKTA 167 (256)
T ss_pred CCcEE--EEE------ECccHHHHHHHHHhhhh
Confidence 44332 221 23345666666655443
No 39
>PRK10331 L-fuculokinase; Provisional
Probab=98.51 E-value=5.8e-07 Score=84.63 Aligned_cols=70 Identities=20% Similarity=0.238 Sum_probs=57.0
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCC--------CCccCCHHHHHHHHHHHHHHHHHHcCCCcc
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS--------NHNSVGEDAARETIEKVMADALLKSGSNRS 93 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~--------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~ 93 (235)
+|+||||+|+|++|++++|. +|++++..+.+.. ++.+++++++|+.+++++++++++. .+.
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~---------~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~--~~~ 70 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDR---------QGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL--TEC 70 (470)
T ss_pred ceEEEEecCCCceEEEEEcC---------CCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC--Ccc
Confidence 38999999999999999999 9999998876521 2447999999999999999999865 234
Q ss_pred cceeeEEec
Q 026689 94 AVRAVCLAV 102 (235)
Q Consensus 94 ~i~~igigi 102 (235)
+|.+|++..
T Consensus 71 ~I~~I~is~ 79 (470)
T PRK10331 71 HIRGITVTT 79 (470)
T ss_pred ceEEEEEec
Confidence 688875533
No 40
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=98.51 E-value=2.8e-07 Score=86.56 Aligned_cols=76 Identities=21% Similarity=0.202 Sum_probs=66.8
Q ss_pred CCcEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC------CCCCccCCHHHHHHHHHHHHHHHHHHcCCCcc
Q 026689 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRS 93 (235)
Q Consensus 20 m~~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~------~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~ 93 (235)
|+.|++|||.|+.+.|+.++|.. +|+.|++...+ ..+..+|+++++|+.++++++++++++++++.
T Consensus 1 ~~~~~iGvDvGTgSaRA~v~D~~--------~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~ 72 (544)
T COG1069 1 MMAYVIGVDVGTGSARAGVFDCQ--------TGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPA 72 (544)
T ss_pred CccEEEEEeecCCceeEEEEEcC--------CCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCChh
Confidence 57799999999999999999982 49999988765 33555799999999999999999999999999
Q ss_pred cceeeEEecc
Q 026689 94 AVRAVCLAVS 103 (235)
Q Consensus 94 ~i~~igigi~ 103 (235)
+|.+|||-.+
T Consensus 73 ~V~gIGvDaT 82 (544)
T COG1069 73 DVVGIGVDAT 82 (544)
T ss_pred HeeEEEEcce
Confidence 9999987665
No 41
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=98.47 E-value=7.9e-07 Score=83.63 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=56.6
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCC--------CCCccCCHHHHHHHHHHHHHHHHHHcCCCccc
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC--------SNHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~--------~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 94 (235)
++||||+|+|++|++++|. +|++++..+.+. ..+.+++++++|+.+++++++++.+ .++.+
T Consensus 2 ~ilgiD~GTss~K~~l~d~---------~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~--~~~~~ 70 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR---------QGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE--LTEKH 70 (465)
T ss_pred eEEEEecCCCcEEEEEEcC---------CCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh--cChhc
Confidence 7899999999999999998 999998877541 2344789999999999999999864 34557
Q ss_pred ceeeEEec
Q 026689 95 VRAVCLAV 102 (235)
Q Consensus 95 i~~igigi 102 (235)
|.+|++..
T Consensus 71 I~aI~~s~ 78 (465)
T TIGR02628 71 IRGIAVTT 78 (465)
T ss_pred eEEEEEec
Confidence 88876633
No 42
>PRK15027 xylulokinase; Provisional
Probab=98.44 E-value=8.8e-07 Score=83.71 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=56.3
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCC------CCCccCCHHHHHHHHHHHHHHHHHHcCCCcccce
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC------SNHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~------~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 96 (235)
++||||+|+|++|++++|. +|++++..+.+. ..+.+++++++|+.+++++++++++. +.++|.
T Consensus 1 ~~lgID~GTts~Ka~l~d~---------~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~--~~~~I~ 69 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNE---------QGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH--SLQDVK 69 (484)
T ss_pred CEEEEEecccceEEEEEcC---------CCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC--Ccccee
Confidence 4799999999999999998 999999885542 24457999999999999999999875 345788
Q ss_pred eeEEe
Q 026689 97 AVCLA 101 (235)
Q Consensus 97 ~igig 101 (235)
+|++.
T Consensus 70 aI~is 74 (484)
T PRK15027 70 ALGIA 74 (484)
T ss_pred EEEEe
Confidence 87663
No 43
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=98.43 E-value=1.1e-06 Score=83.41 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=58.9
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCC------CCccCCHHHHHHHHHHHHHHHHHHcCCCcccce
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 96 (235)
|+||||+|+|++|++++|. +|+++.+.+.+.. .+.+++++++|+.+.+.+++++++.+.. .+|.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~---------~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~-~~I~ 70 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE---------NGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLEDE-DEIL 70 (505)
T ss_pred CEEEEeccccceEEEEEcC---------CCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCCCc-CceE
Confidence 5899999999999999998 9999998876322 2347899999999999999999876654 5688
Q ss_pred eeEEeccC
Q 026689 97 AVCLAVSG 104 (235)
Q Consensus 97 ~igigi~G 104 (235)
+|+++.-+
T Consensus 71 ~Igis~~~ 78 (505)
T TIGR01314 71 FVSFSTQM 78 (505)
T ss_pred EEEEeccc
Confidence 87665443
No 44
>PLN02669 xylulokinase
Probab=98.32 E-value=3e-06 Score=81.63 Aligned_cols=106 Identities=17% Similarity=0.179 Sum_probs=75.3
Q ss_pred CcEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCC---------CCccCCHH----------HHHHHHHHHH
Q 026689 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS---------NHNSVGED----------AARETIEKVM 81 (235)
Q Consensus 21 ~~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~---------~~~~~~~~----------~~~~~i~~~i 81 (235)
..|+||||+|+|++|++|+|. +|++++..+.... +..+++|+ .||+.+..++
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~---------~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l 77 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDS---------NLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLL 77 (556)
T ss_pred CCeEEEEecccCCeEEEEEcC---------CCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHH
Confidence 458999999999999999999 9999998876521 12356776 6779999999
Q ss_pred HHHHHHcCCCcccceeeEEeccCCCCcc------H---------HHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 026689 82 ADALLKSGSNRSAVRAVCLAVSGVNHPT------D---------QQRILNWLRDIFPGNVRLYVHNDALAALA 139 (235)
Q Consensus 82 ~~~l~~~~~~~~~i~~igigi~G~~~~~------~---------~~~l~~~l~~~~~~~~~v~v~NDa~~a~~ 139 (235)
+++. +.+.+.++|.+| +++|+.+.. . ..++.+.|.+.|.. .+..+..|.+++-.
T Consensus 78 ~~l~-~~~~~~~~I~aI--s~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~-~~~i~W~D~Ra~~e 146 (556)
T PLN02669 78 QKLA-KEKFPFHKVVAI--SGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFST-KDSPIWMDSSTTKQ 146 (556)
T ss_pred HHHH-HcCCChhhEEEE--EecCCcceEEEecCCCCccccccccccchhhhhhhhhcC-CCCcccCCccHHHH
Confidence 9987 566667788886 556653211 0 12344556656642 45667889887644
No 45
>PLN02596 hexokinase-like
Probab=98.31 E-value=7.7e-05 Score=70.62 Aligned_cols=134 Identities=14% Similarity=0.039 Sum_probs=80.7
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEe--C-CCCCccCCHHHHHHHHHHHHHHHHHHcCCCcc-----
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAA--G-CSNHNSVGEDAARETIEKVMADALLKSGSNRS----- 93 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~--~-~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~----- 93 (235)
..||++|.|||+.|+..++..++ +..+....+. + +........+++++-|.+.+.+++++.+....
T Consensus 96 G~yLAlDlGGTNfRV~~V~L~g~------~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~~~~~~~~~~~~ 169 (490)
T PLN02596 96 GLYYGLNLRGSNFLLLRARLGGK------NEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAEHPGDEADTPER 169 (490)
T ss_pred eEEEEEeeCCceEEEEEEEEcCC------CCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 46899999999999999998321 1112222111 1 11122235678999999999999977543211
Q ss_pred -cceeeEEeccCCCCc----------------cHHHH----HHHHHHhh-CCCCceEEEeCcHHHHHHhhc-CCCCCEEE
Q 026689 94 -AVRAVCLAVSGVNHP----------------TDQQR----ILNWLRDI-FPGNVRLYVHNDALAALASGT-MGKLHGCV 150 (235)
Q Consensus 94 -~i~~igigi~G~~~~----------------~~~~~----l~~~l~~~-~~~~~~v~v~NDa~~a~~~~~-~g~~~gi~ 150 (235)
-..++.+++|=-... ..+.. |.+.++++ ++. ..+.|.||....+++.+ ...+.-+-
T Consensus 170 ~l~lGfTFSFP~~Q~si~~G~Li~WKgF~~~~~vG~Dvv~lL~~Al~r~~l~v-~v~AivNDTVgTL~a~aY~~~~~~iG 248 (490)
T PLN02596 170 VKKLGFTVSYPVDQAAASSGSAIKWKSFSADDTVGKALVNDINRALEKHGLKI-RVFALVDDTIGNLAGGRYYNKDTVAA 248 (490)
T ss_pred ccccceEEeeeeeecCCCCEEEEEeccccCCCccCcHHHHHHHHHHHhcCCCc-eEEEEEEcCHHHHHhhhcCCCCeEEE
Confidence 123444555422110 01123 45555443 332 57899999998887654 33334667
Q ss_pred EEeCCCceeEEE
Q 026689 151 LIAGTGTIAYGF 162 (235)
Q Consensus 151 li~GTGs~~~g~ 162 (235)
+|+|||.+++.+
T Consensus 249 ~I~GTGtNacY~ 260 (490)
T PLN02596 249 VTLGMGTNAAYV 260 (490)
T ss_pred EEEecccceEEE
Confidence 999999997654
No 46
>PRK03011 butyrate kinase; Provisional
Probab=98.23 E-value=2e-05 Score=72.05 Aligned_cols=131 Identities=18% Similarity=0.171 Sum_probs=80.3
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCC-----CCc-cCCHHHHHHHHHHHHHHHHHHcCCCcccce
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-----NHN-SVGEDAARETIEKVMADALLKSGSNRSAVR 96 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~-----~~~-~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 96 (235)
.+|.|.-|.|+||+++|+. .+.+.......+ ++. -.+..++ + .+.+.+++.+.++..+++.
T Consensus 3 ~il~inpgststk~a~~~~----------~~~~~~~~~~h~~~~~~~~~~~~~q~~~--r-~~~i~~~l~~~g~~~~~l~ 69 (358)
T PRK03011 3 RILVINPGSTSTKIAVFED----------EKPIFEETLRHSAEELEKFKTIIDQYEF--R-KQAILDFLKEHGIDLSELD 69 (358)
T ss_pred EEEEEcCCCchheEEEEcC----------CceeeeeccccCHHHHhcCCCccchHHH--H-HHHHHHHHHHcCCChhcce
Confidence 5899999999999999985 344444433211 110 0111111 1 3445566777887777888
Q ss_pred eeEEeccCCCCcc--------H------------------HHHHHHHHHhhCCCCceEEEeCc-----------------
Q 026689 97 AVCLAVSGVNHPT--------D------------------QQRILNWLRDIFPGNVRLYVHND----------------- 133 (235)
Q Consensus 97 ~igigi~G~~~~~--------~------------------~~~l~~~l~~~~~~~~~v~v~ND----------------- 133 (235)
+| ++-+|+..+- + ...+...+.+.++ +|++|.|+
T Consensus 70 av-~~RgG~~~~v~gG~~~v~~~~~~~l~~~~~~~~~~nl~~~~a~~~~~~~~--~p~~v~D~~~~~~~~~~a~~~~lp~ 146 (358)
T PRK03011 70 AV-VGRGGLLKPIPGGTYRVNEAMLEDLKNGKYGEHASNLGAIIAYEIAKELG--IPAFIVDPVVVDEMEPVARISGLPE 146 (358)
T ss_pred EE-EEcCCCCcccCCCCEEcCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC--CCEEEECCcccccCCHHHHHcCCCC
Confidence 87 7777765421 0 1234444445555 78999999
Q ss_pred ---------HHHHHHhh----c--C--CCCCEEEEEeCCCceeEEEecCCcEEE
Q 026689 134 ---------ALAALASG----T--M--GKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (235)
Q Consensus 134 ---------a~~a~~~~----~--~--g~~~gi~li~GTGs~~~g~~~~G~~~~ 170 (235)
.+..+.+. . + ...+.+++.+|||+++ +++.||++..
T Consensus 147 i~R~~gfHgln~~~va~~~a~~~g~~~~~~n~I~~hLGtGig~-gai~~Gk~id 199 (358)
T PRK03011 147 IERKSIFHALNQKAVARRVAKELGKKYEELNLIVAHLGGGISV-GAHRKGRVID 199 (358)
T ss_pred cceeecchHHhHHHHHHHHHHHhCCCcccCcEEEEEeCCCcee-eEEECCEEEe
Confidence 33332221 1 1 2348999999999965 5668999875
No 47
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=98.06 E-value=0.00012 Score=67.53 Aligned_cols=135 Identities=14% Similarity=0.019 Sum_probs=85.2
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC--CCCCc-cCCHHHHHHHHHHHHHHHHHHcCCC-cc-cc-
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG--CSNHN-SVGEDAARETIEKVMADALLKSGSN-RS-AV- 95 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~--~~~~~-~~~~~~~~~~i~~~i~~~l~~~~~~-~~-~i- 95 (235)
.-+|+||.|||+.|++++...+ +|+.--+.... +.+.. ...+++++..|+.-++.++.+.... .. .+
T Consensus 75 g~~LaiD~GGTnlRvc~V~l~g-------~gt~~~~~sks~lp~e~~~~~~~~~l~~~iadrl~~fi~~~~~~~~~~~l~ 147 (466)
T COG5026 75 GSVLAIDLGGTNLRVCLVVLGG-------DGTFDIEQSKSFLPVECRDSESRDELFGFIADRLAAFIKEQHPSGYGSKLP 147 (466)
T ss_pred CCEEEEecCCceEEEEEEEeCC-------CCCcccccCcccCchhhccCCChHHHHHHHHHHHHHHHHHhCchhccCcce
Confidence 4799999999999999998732 55544433221 11111 1368899999999999987664321 11 11
Q ss_pred eeeEEeccCCCCcc-H--------------------HHHHHHHHHhhC-CCCceEEEeCcHHHHHHhh-cCCCCCEEEEE
Q 026689 96 RAVCLAVSGVNHPT-D--------------------QQRILNWLRDIF-PGNVRLYVHNDALAALASG-TMGKLHGCVLI 152 (235)
Q Consensus 96 ~~igigi~G~~~~~-~--------------------~~~l~~~l~~~~-~~~~~v~v~NDa~~a~~~~-~~g~~~gi~li 152 (235)
.+..++.|-...+- + ..-+.+.|+++. |. +-+.|.||+..++++. +.+.++.+-+|
T Consensus 148 ~gfTFSYP~~q~sin~g~l~rwTKgf~i~e~ig~dvv~~l~e~l~~r~~pi-~v~aviNDttgtlla~~yt~~~~~iG~I 226 (466)
T COG5026 148 IGFTFSYPLNQTSINEGQLIRWTKGFDIPEVIGTDVVRLLQEALSARNLPI-RVVAVINDTTGTLLASVYTSSETIIGII 226 (466)
T ss_pred eeEEEeccccccccCceeeEeecccCcchhhhhhhHHHHHHHHHHhcCCce-EEEEEecccHHHHHHHhhcCCCCeEEEE
Confidence 23444444332110 0 134566665553 32 4578999999888765 34567899999
Q ss_pred eCCCceeEEEec
Q 026689 153 AGTGTIAYGFTE 164 (235)
Q Consensus 153 ~GTGs~~~g~~~ 164 (235)
.|||.+++.+.+
T Consensus 227 fGTGtN~~y~e~ 238 (466)
T COG5026 227 FGTGTNGCYCEP 238 (466)
T ss_pred EecCccceEEee
Confidence 999999876544
No 48
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=97.93 E-value=3.9e-05 Score=72.55 Aligned_cols=78 Identities=21% Similarity=0.228 Sum_probs=61.6
Q ss_pred CcEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC------CCCCccCCHHHHHHHHHHHHHHHHHHcCCCccc
Q 026689 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (235)
Q Consensus 21 ~~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~------~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 94 (235)
+++++|||+|+|++|++|+|.. +++++..++.+ ...+.+++|.++|++++++++.+.++.+..+.+
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~--------~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~ 76 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAK--------NGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIK 76 (516)
T ss_pred cceEEEEEcCCCceEEEEEecC--------CCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhcccccc
Confidence 4689999999999999999942 78888877654 234558999999999999999998887765555
Q ss_pred cee-eEEeccCCC
Q 026689 95 VRA-VCLAVSGVN 106 (235)
Q Consensus 95 i~~-igigi~G~~ 106 (235)
+.+ +++|+++.-
T Consensus 77 ~~~~~~igv~~qr 89 (516)
T KOG2517|consen 77 VVGATCIGVVNQR 89 (516)
T ss_pred ccccEEEEEEecC
Confidence 543 567777764
No 49
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=97.91 E-value=0.0016 Score=57.07 Aligned_cols=135 Identities=21% Similarity=0.143 Sum_probs=91.0
Q ss_pred CcEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCc---cCCHHHHHHHHHHHHHHHHHHcCCCccccee
Q 026689 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN---SVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (235)
Q Consensus 21 ~~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 97 (235)
.+++++||+|+||+++++.+. .++++.....+..... -.+.+...+.|.++++.+-...+. ++..
T Consensus 23 ~~~~~~iDiGSssi~~vv~~~---------~~~~~~~~~~~~~~vr~G~i~di~~a~~~i~~~~~~ae~~~g~---~i~~ 90 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVLDE---------DGQPVAGALEWADVVRDGIVVDFIGAVTIVRRLKATLEEKLGR---ELTH 90 (267)
T ss_pred CCEEEEEEccCceEEEEEEcC---------CCCEEEEEeccccccCCCEEeeHHHHHHHHHHHHHHHHHHhCC---CcCe
Confidence 458999999999999999876 5666666655432111 246777777777777666555555 3666
Q ss_pred eEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCEEEEEeCCCceeEEEecCCcEEEe
Q 026689 98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARA 171 (235)
Q Consensus 98 igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~g~~~gi~li~GTGs~~~g~~~~G~~~~~ 171 (235)
+.+++|.-.+......+.+.+++ .+. .+..+.++..+++.+- ..++.+++=+|.|+--..+..+|++...
T Consensus 91 v~~~vp~~~~~~~~~~~~~~~~~-aGl-~~~~ii~e~~A~a~~~--~~~~~~vvDIGggtt~i~v~~~g~~~~~ 160 (267)
T PRK15080 91 AATAIPPGTSEGDPRAIINVVES-AGL-EVTHVLDEPTAAAAVL--GIDNGAVVDIGGGTTGISILKDGKVVYS 160 (267)
T ss_pred EEEEeCCCCCchhHHHHHHHHHH-cCC-ceEEEechHHHHHHHh--CCCCcEEEEeCCCcEEEEEEECCeEEEE
Confidence 67788887655455556655554 342 3556888888776542 2235788999999866667778876654
No 50
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.77 E-value=5.7e-05 Score=65.39 Aligned_cols=65 Identities=20% Similarity=0.321 Sum_probs=49.9
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEec
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi 102 (235)
|+||||+|+|++|++++| ++++++..+..+ +.+|+.+.+.+++++++.+.++.++.+| ++
T Consensus 1 ~~lGIDiGtts~K~vl~d----------~g~il~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~i~~i--~~ 60 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME----------DGKVIGYKWLDT--------TPVIEETARAILEALKEAGIGLEPIDKI--VA 60 (248)
T ss_pred CEEEEEcChhheEEEEEc----------CCEEEEEEEecC--------CCCHHHHHHHHHHHHHHcCCChhheeEE--EE
Confidence 479999999999999997 368888877532 2346667788888888888777778775 55
Q ss_pred cCCCC
Q 026689 103 SGVNH 107 (235)
Q Consensus 103 ~G~~~ 107 (235)
+|...
T Consensus 61 Tg~~~ 65 (248)
T TIGR00241 61 TGYGR 65 (248)
T ss_pred ECCCc
Confidence 77753
No 51
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=97.59 E-value=0.0047 Score=53.31 Aligned_cols=129 Identities=20% Similarity=0.124 Sum_probs=86.5
Q ss_pred EEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCC---ccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEec
Q 026689 26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH---NSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (235)
Q Consensus 26 giD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~---~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi 102 (235)
|+|+|++++|+++.+. +++.++....+.... .-.|.+.....+.++.+.+-...+. ++..+.+++
T Consensus 1 g~dig~~~ik~v~~~~---------~~~~~~~~~~~~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~---~~~~vvisV 68 (239)
T TIGR02529 1 GVDLGTANIVIVVLDE---------DGQPVAGVMQFADVVRDGIVVDFLGAVEIVRRLKDTLEQKLGI---ELTHAATAI 68 (239)
T ss_pred CCCcccceEEEEEEec---------CCCEEEEEecccccccCCeEEEhHHHHHHHHHHHHHHHHHhCC---CcCcEEEEE
Confidence 6899999999999887 555666665543211 1256777666666666555444443 456677899
Q ss_pred cCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCEEEEEeCCCceeEEEecCCcEEE
Q 026689 103 SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (235)
Q Consensus 103 ~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~g~~~gi~li~GTGs~~~g~~~~G~~~~ 170 (235)
|...+...+..+.+.++.. +. .++.+.++..+++++- +....+++-.|.|..-..+..+|++..
T Consensus 69 P~~~~~~~r~a~~~a~~~a-Gl-~~~~li~ep~Aaa~~~--~~~~~~vvDiGggtt~i~i~~~G~i~~ 132 (239)
T TIGR02529 69 PPGTIEGDPKVIVNVIESA-GI-EVLHVLDEPTAAAAVL--QIKNGAVVDVGGGTTGISILKKGKVIY 132 (239)
T ss_pred CCCCCcccHHHHHHHHHHc-CC-ceEEEeehHHHHHHHh--cCCCcEEEEeCCCcEEEEEEECCeEEE
Confidence 9987666555566665543 43 5789999999887642 223468899998876566667776553
No 52
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=97.54 E-value=0.00025 Score=58.52 Aligned_cols=63 Identities=25% Similarity=0.267 Sum_probs=49.7
Q ss_pred EEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEec
Q 026689 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (235)
Q Consensus 25 LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi 102 (235)
+|||+|||.|.++++|. +..++...+.+++ ++.....+.+++++++.+.+.++++|..|.+|.
T Consensus 2 igIDvGGT~TD~v~~d~---------~~~~~~~~K~~Tt------~~d~~~gi~~al~~l~~~~~~~~~~i~~v~~gT 64 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDE---------DTGVVATAKVPTT------PDDPAEGILEALDALLEESGIDPSDIDRVRHGT 64 (176)
T ss_pred eeEecCCCcEEEEEEeC---------CCCEEEEEEeCCC------CcCHHHHHHHHHHhhhcccCCChhhCcEEEecc
Confidence 79999999999999998 6578888887654 233455778888888888777777888876654
No 53
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=97.46 E-value=0.0011 Score=56.09 Aligned_cols=113 Identities=16% Similarity=0.064 Sum_probs=68.0
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEE-EEEeC-CCCCccCCHHHHHHHHHHHHHHHHHHcCC-Ccccceee
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLA-RAAAG-CSNHNSVGEDAARETIEKVMADALLKSGS-NRSAVRAV 98 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~-~~~~~-~~~~~~~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~i 98 (235)
..+|+||.|||+.|++++...+ ++.+.. +.... +........+++++-|.+.+.+++.+... +..+...+
T Consensus 63 G~~LalDlGGTnlRv~~V~L~g-------~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~~~l~l 135 (206)
T PF00349_consen 63 GDFLALDLGGTNLRVALVELSG-------NGKVEIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLESRDEKLPL 135 (206)
T ss_dssp EEEEEEEESSSSEEEEEEEEES-------SSEEEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTTSTTSEEEE
T ss_pred ceEEEEeecCcEEEEEEEEEcC-------CCCceeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhcccccccccce
Confidence 4789999999999999999832 222221 11111 11111234588999999999999988765 22233344
Q ss_pred EEeccCCCCcc---------H--------------HHHHHHHHHhhC-CCCceEEEeCcHHHHHHhh
Q 026689 99 CLAVSGVNHPT---------D--------------QQRILNWLRDIF-PGNVRLYVHNDALAALASG 141 (235)
Q Consensus 99 gigi~G~~~~~---------~--------------~~~l~~~l~~~~-~~~~~v~v~NDa~~a~~~~ 141 (235)
|+.++=|...+ + ...|.+.|.++- +....+.|.||..+.+++.
T Consensus 136 GfTFSFP~~q~~~~~g~li~wtKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~ 202 (206)
T PF00349_consen 136 GFTFSFPVEQTSLNSGTLIRWTKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAG 202 (206)
T ss_dssp EEEEESSEEESSTTEEEE----TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHH
T ss_pred EEEEEEEEEeccCCCeEEEEeeccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhh
Confidence 55444442211 0 245667776553 2114689999999988764
No 54
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=97.45 E-value=0.0026 Score=59.90 Aligned_cols=135 Identities=16% Similarity=0.014 Sum_probs=83.2
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEE--EeC-CCCCccCCHHHHHHHHHHHHHHHHHHcCCC-cc-cce
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARA--AAG-CSNHNSVGEDAARETIEKVMADALLKSGSN-RS-AVR 96 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~--~~~-~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~-~~-~i~ 96 (235)
..++++|.|||+.|+.++...+ ++....+. ... +.....-..+++++.|...+..++++.+.. .+ ...
T Consensus 86 G~~lalDLGGTn~Rv~~v~L~g-------~~~~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~~~~~l~l 158 (474)
T KOG1369|consen 86 GKFLALDLGGTNFRVLLVKLGG-------GRTSVRMYNKIYAIPEEIMQGTGEELFDFIARCLADFLDKMGLKGASKLPL 158 (474)
T ss_pred CCEEEEecCCCceEEEEEEecC-------CcccceeeeeeEecCHHHHcCchHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 4689999999999999999821 12112221 111 211112356788999999999998876542 11 123
Q ss_pred eeEEeccCCCCcc-------H--------------HHHHHHHHHhhC-CCCceEEEeCcHHHHHHhh-cCCCCCEEEEEe
Q 026689 97 AVCLAVSGVNHPT-------D--------------QQRILNWLRDIF-PGNVRLYVHNDALAALASG-TMGKLHGCVLIA 153 (235)
Q Consensus 97 ~igigi~G~~~~~-------~--------------~~~l~~~l~~~~-~~~~~v~v~NDa~~a~~~~-~~g~~~gi~li~ 153 (235)
+.-++.|--...- + ...+.+.|+++. +...-+.+.||....+.+. +...+..+-|+.
T Consensus 159 gFTFSfP~~Q~si~~g~L~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~igvI~ 238 (474)
T KOG1369|consen 159 GFTFSFPCRQTSIDKGTLIRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEIGVIF 238 (474)
T ss_pred ceEEeeeeeecccccceEEEecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCCCcEEEEEE
Confidence 4445555432110 0 134666666653 2113578999999877654 345567889999
Q ss_pred CCCceeEEEe
Q 026689 154 GTGTIAYGFT 163 (235)
Q Consensus 154 GTGs~~~g~~ 163 (235)
|||.+++.+.
T Consensus 239 GTGtNacY~e 248 (474)
T KOG1369|consen 239 GTGTNACYME 248 (474)
T ss_pred CCCccceeee
Confidence 9999977543
No 55
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.04 E-value=0.0016 Score=59.94 Aligned_cols=36 Identities=31% Similarity=0.377 Sum_probs=30.3
Q ss_pred CcEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCC-CCC
Q 026689 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC-SNH 65 (235)
Q Consensus 21 ~~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~-~~~ 65 (235)
|+|++|||+|+|+||++|+|. +++++.+...++ .++
T Consensus 1 m~y~lGIDIGSTsTKaVVmd~---------~g~Il~~~i~pTG~np 37 (432)
T TIGR02259 1 MECFVGIDLGSTTTKAVLMDD---------KGEVIGRGITNSRSNY 37 (432)
T ss_pred CceEEEEEcCchhEEEEEEcC---------CCcEEEEEecCCCCCh
Confidence 359999999999999999998 778998888765 444
No 56
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=96.98 E-value=0.0015 Score=61.25 Aligned_cols=69 Identities=12% Similarity=0.011 Sum_probs=47.2
Q ss_pred EEEEcCccceEEEEEeCccCCCCCCCCCCEE-EEEEeCCC------CCccCCHHHHHHHHHHHHHHHHHHcCCCccccee
Q 026689 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVL-ARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (235)
Q Consensus 25 LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il-~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 97 (235)
|+||+|+|++|+++++..+. .++++ ........ ++.+++++.+|+.+.++++++... ..+|.+
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~----~~~i~~ 70 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENE------CQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE----GIAPDS 70 (454)
T ss_pred CcEeccCCchheEEEEEcCC------CceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc----CCCceE
Confidence 58999999999999998210 15665 33333222 233688999999999999998653 235777
Q ss_pred eEEeccCC
Q 026689 98 VCLAVSGV 105 (235)
Q Consensus 98 igigi~G~ 105 (235)
|++ ++.
T Consensus 71 Igi--s~q 76 (454)
T TIGR02627 71 IGI--DTW 76 (454)
T ss_pred EEE--ecc
Confidence 654 554
No 57
>PRK13320 pantothenate kinase; Reviewed
Probab=96.96 E-value=0.11 Score=45.06 Aligned_cols=140 Identities=19% Similarity=0.151 Sum_probs=76.8
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEec
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi 102 (235)
++|.||+|-|++|+++++. ++++...+.+ .+++...+. +++++.+ ++..+.++.
T Consensus 3 M~L~iDiGNT~ik~~~~~~----------~~~~~~~~~~--------~~~~~~~l~----~~~~~~~----~i~~i~vsS 56 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEG----------DELLEVFVVS--------TEGVEESLE----KLLAKYP----AIRDAIVSS 56 (244)
T ss_pred eEEEEEeCCCcEEEEEEEC----------CEEEEEEEEc--------cHHHHHHHH----HHHHHCC----CCCEEEEEe
Confidence 5899999999999999985 4555544432 223322333 3444332 356665554
Q ss_pred cCCCCccHHHHHHHHHHhhCC-------CCceE--------EEeCcHHHHHHhhc--CCCCCEEEEEeCCCceeEEEecC
Q 026689 103 SGVNHPTDQQRILNWLRDIFP-------GNVRL--------YVHNDALAALASGT--MGKLHGCVLIAGTGTIAYGFTED 165 (235)
Q Consensus 103 ~G~~~~~~~~~l~~~l~~~~~-------~~~~v--------~v~NDa~~a~~~~~--~g~~~gi~li~GTGs~~~g~~~~ 165 (235)
-.+.. ...+.+.+++.++ ...++ .+--|-.++++++. ...++.+++-+||-+-.-.+..+
T Consensus 57 Vvp~~---~~~~~~~~~~~~~~~~v~~~~~~gi~~~Y~~p~~lG~DR~~~~~aa~~~~~~~~~lVID~GTA~Tid~v~~~ 133 (244)
T PRK13320 57 VVPLA---EEAFSALLKLLFAVLELDSETPLPFRNDYDTPETLGADRLALCAGARYLFPGKNVLAIDAGTAITYDVLDSE 133 (244)
T ss_pred cccch---HHHHHHHHHHhCCcEEECCCCCCCCceeccChhhcchhHHHHHHHHHHhcCCCCEEEEEcCCceEEEEEcCC
Confidence 44432 2355555555432 00122 22234445555543 22357999999998754444455
Q ss_pred CcEEEeCCCCccccccchHHHHHHHHHHHHHHHh
Q 026689 166 GRDARAAGAGPILGDWGSGYGIAAQALTAVIRAY 199 (235)
Q Consensus 166 G~~~~~Gg~G~llgd~gSg~~ig~~al~~~~~~~ 199 (235)
|+.. || --.-|..+.+++|......+
T Consensus 134 g~~~--GG------~I~PG~~l~~~aL~~~Ta~L 159 (244)
T PRK13320 134 GVYL--GG------LISPGLEMRFKALHEFTARL 159 (244)
T ss_pred CcEE--EE------EEchhHHHHHHHHHHhhccC
Confidence 5432 22 22446777777777654443
No 58
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=96.82 E-value=0.0093 Score=55.62 Aligned_cols=76 Identities=16% Similarity=0.306 Sum_probs=55.9
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCc---cCCHHHHHHHHHHHHHHHHHHcCCCcccceee
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN---SVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~i 98 (235)
++++|+|+|+|++++++..... ++.-++++..+.++.... -.+.+++.+.|.++++++-..++. ++..+
T Consensus 8 ~~i~~lDIGsskv~~vv~~~~~-----~~~~~i~g~~~~~s~gi~~G~I~d~~~~~~aI~~av~~ae~~~g~---~i~~v 79 (420)
T PRK09472 8 KLVVGLEIGTAKVAALVGEVLP-----DGMVNIIGVGSCPSRGMDKGGVNDLESVVKCVQRAIDQAELMADC---QISSV 79 (420)
T ss_pred CEEEEEEcccceEEEEEEEEcC-----CCCEEEEEEEEccCCCccCCEEEcHHHHHHHHHHHHHHHHHHhCC---cccEE
Confidence 4789999999999999876310 113567777776543221 257889999999999998877776 47778
Q ss_pred EEeccCC
Q 026689 99 CLAVSGV 105 (235)
Q Consensus 99 gigi~G~ 105 (235)
.+++||.
T Consensus 80 ~v~i~g~ 86 (420)
T PRK09472 80 YLALSGK 86 (420)
T ss_pred EEEecCc
Confidence 8899987
No 59
>PRK13324 pantothenate kinase; Reviewed
Probab=96.81 E-value=0.1 Score=45.65 Aligned_cols=145 Identities=16% Similarity=0.122 Sum_probs=80.0
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEecc
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~ 103 (235)
+|.||+|=|++++++++. .+++...+..+.... ...+++. ..+..++...+....++..+.+ +
T Consensus 2 iL~iDiGNT~ik~gl~~~----------~~~~~~~r~~t~~~~-~t~de~~----~~l~~~~~~~~~~~~~i~~vii--s 64 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG----------DRIVSQIRYATSSVD-STSDQMG----VFLRQALRENSVDLGKIDGCGI--S 64 (258)
T ss_pred EEEEEeCCCceEEEEEEC----------CEEEEEEEEecCccc-cchHHHH----HHHHHHHHhcCCCccCCCeEEE--E
Confidence 799999999999999985 345555554432221 2344443 4444455555555446777644 4
Q ss_pred CCCCccHHHHHHHHHHhhCCCCceEEEe-----------------CcHHHHHHhhc--CCCCCEEEEEeCCCceeEEEec
Q 026689 104 GVNHPTDQQRILNWLRDIFPGNVRLYVH-----------------NDALAALASGT--MGKLHGCVLIAGTGTIAYGFTE 164 (235)
Q Consensus 104 G~~~~~~~~~l~~~l~~~~~~~~~v~v~-----------------NDa~~a~~~~~--~g~~~gi~li~GTGs~~~g~~~ 164 (235)
... |.-...+.+.+.+.|+. .|+++. -|-.++++++. ....+.+|+-+||-.-.-.+..
T Consensus 65 SVv-P~l~~~l~~~~~~~~~~-~~~~v~~~~~~l~~~y~~p~~lG~DR~~~~vaA~~~~~~~~~iViD~GTA~T~d~v~~ 142 (258)
T PRK13324 65 SVV-PHLNYSLGSAVIKYFNI-KPFFISMDTTDLDMSAVEAHQVGADRIASCISAIADHPNKDLLIIDLGTATTFDLVTK 142 (258)
T ss_pred eCc-chhHHHHHHHHHHHhCC-CeEEEecCCccceeecCChhhccHHHHHHHHHHHHhcCCCCEEEEEcCCceEEEEEcC
Confidence 444 55445665666666652 344442 23334444442 2234789999999764333445
Q ss_pred CCcEEEeCCCCccccccchHHHHHHHHHHHH
Q 026689 165 DGRDARAAGAGPILGDWGSGYGIAAQALTAV 195 (235)
Q Consensus 165 ~G~~~~~Gg~G~llgd~gSg~~ig~~al~~~ 195 (235)
+|+.. || --.-|..+.+++|...
T Consensus 143 ~g~~~--GG------~I~PG~~l~~~aL~~~ 165 (258)
T PRK13324 143 DKKYL--SG------SIMPGVKLSLNALCQG 165 (258)
T ss_pred CCeEE--EE------EECccHHHHHHHHHHH
Confidence 55332 11 1233455555555544
No 60
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=96.79 E-value=0.0076 Score=49.80 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=54.7
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCc---cCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEE
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN---SVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igi 100 (235)
++++|+|++++++++....+ +++-++++....++.... -.+.+.+.+.|.++++++.++++. ++..+.+
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~-----~~~~~i~g~~~~~s~gi~~G~I~d~~~~~~~I~~ai~~ae~~~~~---~i~~V~v 72 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDE-----DGEINVIGVGEVPSRGIRKGVIVDIEAAARAIREAVEEAERMAGV---KIDSVYV 72 (187)
T ss_pred CEEEEeccceEEEEEEEEcC-----CCCEEEEEEEEecCCCccCcEEECHHHHHHHHHHHHHHHHHHhCC---cccEEEE
Confidence 47999999999999987521 013467777766532211 257889999999999998887776 4667788
Q ss_pred eccCCC
Q 026689 101 AVSGVN 106 (235)
Q Consensus 101 gi~G~~ 106 (235)
++||..
T Consensus 73 ~i~g~~ 78 (187)
T smart00842 73 GISGRH 78 (187)
T ss_pred EEcCCc
Confidence 999985
No 61
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.78 E-value=0.0098 Score=52.91 Aligned_cols=65 Identities=12% Similarity=0.166 Sum_probs=46.4
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEec
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi 102 (235)
+++|||+|.|.+|++|+|. + +++.....++. .++.+ ...+++++++++.+...+++..+ +.
T Consensus 33 ~~~GIDiGStt~K~Vlld~---------~-~i~~~~~~~tg----~~~~~---~a~~~l~~~l~~~g~~~~~v~~~--~~ 93 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVCD---------G-ELYGYNSMRTG----NNSPD---SAKNALQGIMDKIGMKLEDINYV--VG 93 (293)
T ss_pred EEEEEEeCchhEEEEEEeC---------C-EEEEEEeecCC----CCHHH---HHHHHHHHHHHHcCCcccceEEE--EE
Confidence 7999999999999999985 3 66666554332 13333 46677778888888766677765 44
Q ss_pred cCCC
Q 026689 103 SGVN 106 (235)
Q Consensus 103 ~G~~ 106 (235)
+|..
T Consensus 94 TGyG 97 (293)
T TIGR03192 94 TGYG 97 (293)
T ss_pred ECcc
Confidence 7765
No 62
>PRK13317 pantothenate kinase; Provisional
Probab=96.70 E-value=0.027 Score=49.76 Aligned_cols=115 Identities=16% Similarity=0.153 Sum_probs=61.2
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEe
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igig 101 (235)
++.+|||+|+|.+|++++|. +++++.+. +..... +.+. +.+.. ..++..+ .
T Consensus 2 ~~~iGIDiGstt~K~v~~~~---------~~~~~~~~------~~~~~~----~~~~----~~l~~----~~~~~~i--~ 52 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEE---------KKQRTFKT------EYSAEG----KKVI----DWLIN----LQDIEKI--C 52 (277)
T ss_pred CceEEEEeCcccEEEEEEcC---------CCeEEEEe------eccHHH----HHHH----HHhhc----cCCceEE--E
Confidence 47899999999999999997 66665433 111111 1222 22221 1234444 4
Q ss_pred ccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhh--c-----CCCCCEEEEEeCCCceeEEEecCCcEEEeCCC
Q 026689 102 VSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG--T-----MGKLHGCVLIAGTGTIAYGFTEDGRDARAAGA 174 (235)
Q Consensus 102 i~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~--~-----~g~~~gi~li~GTGs~~~g~~~~G~~~~~Gg~ 174 (235)
++|-... .+.+.+ .++ .|+.=..-..+...+. . .+..+.+++..|||.. .-++.+++..|.+|-
T Consensus 53 ~TG~g~~----~~~~~~--~~~--~~~~~v~E~~a~~~g~~~l~~~~~~~~~~~~i~~iG~g~s-i~~~~g~~~~r~~Gt 123 (277)
T PRK13317 53 LTGGKAG----YLQQLL--NYG--YPIAEFVEFEATGLGVRYLLKEEGHDLNDYIFTNIGTGTS-IHYVDGNSQRRVGGT 123 (277)
T ss_pred EECcchh----hhhHHH--hcC--CCeeeeHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCceE-EEEEeCCceEEEccc
Confidence 4665432 222222 133 4441122222222221 1 2556889999999985 445566677776654
No 63
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.53 E-value=0.016 Score=50.76 Aligned_cols=67 Identities=21% Similarity=0.204 Sum_probs=45.2
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCC---EEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeE
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLP---VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~---il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ig 99 (235)
+++|||+|.|.+|++|+|. +++ ++.....++.. .+|. +...+++++++++.+++..++..+
T Consensus 2 ~~~GIDiGStttK~Vlid~---------~~~~~~~~~~~~~~~~~---~~~~---~~~~~~l~~~~~~~g~~~~~i~~i- 65 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEV---------DGDKEECLAKRNDRIRQ---RDPF---KLAEDAYDDLLEEAGLAAADVAYC- 65 (262)
T ss_pred eEEEEEcCcccEEEEEEec---------CCCeeEEEEEEEecCCC---CCHH---HHHHHHHHHHHHHcCCChhheEEE-
Confidence 6899999999999999996 443 33333332211 2332 346677888888888876677775
Q ss_pred EeccCCC
Q 026689 100 LAVSGVN 106 (235)
Q Consensus 100 igi~G~~ 106 (235)
+.+|..
T Consensus 66 -~~TGYG 71 (262)
T TIGR02261 66 -ATTGEG 71 (262)
T ss_pred -EEECCc
Confidence 457875
No 64
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.53 E-value=0.011 Score=54.78 Aligned_cols=65 Identities=25% Similarity=0.351 Sum_probs=48.5
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEe
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igig 101 (235)
.+++|||+|+|.||+++++. ++++.....++. .+ .+...+++++++++.++..+++..+ +
T Consensus 144 g~~lGIDiGSTttK~Vl~dd----------~~Ii~~~~~~t~-----~~---~~~a~~~l~~~l~~~Gl~~~di~~i--~ 203 (404)
T TIGR03286 144 GLTLGIDSGSTTTKAVVMED----------NEVIGTGWVPTT-----KV---IESAEEAVERALEEAGVSLEDVEAI--G 203 (404)
T ss_pred CEEEEEEcChhheeeEEEcC----------CeEEEEEEeecc-----cH---HHHHHHHHHHHHHHcCCCccceeEE--E
Confidence 38999999999999999874 478877665432 12 4467788888888888877777775 5
Q ss_pred ccCCC
Q 026689 102 VSGVN 106 (235)
Q Consensus 102 i~G~~ 106 (235)
++|..
T Consensus 204 ~TGyG 208 (404)
T TIGR03286 204 TTGYG 208 (404)
T ss_pred eeeec
Confidence 57765
No 65
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.29 E-value=0.17 Score=46.48 Aligned_cols=65 Identities=26% Similarity=0.315 Sum_probs=43.1
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEe
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igig 101 (235)
.++||||.|.|.||+++++. +..++..... ++.. .|. . .+++++++++.+.+..+|.+ ++
T Consensus 135 ~~~LGID~GSTtTK~VLm~d---------~~~I~~~~~~-~t~g---~p~-~----~~~l~~~le~l~~~~~~I~~--~~ 194 (396)
T COG1924 135 MYTLGIDSGSTTTKAVLMED---------GKEILYGFYV-STKG---RPI-A----EKALKEALEELGEKLEEILG--LG 194 (396)
T ss_pred cEEEEEecCCcceeEEEEeC---------CCeEEEEEEE-cCCC---Chh-H----HHHHHHHHHHcccChheeee--ee
Confidence 38999999999999999997 5545544443 3322 222 2 45566666666666556776 46
Q ss_pred ccCCC
Q 026689 102 VSGVN 106 (235)
Q Consensus 102 i~G~~ 106 (235)
++|..
T Consensus 195 ~TGYG 199 (396)
T COG1924 195 VTGYG 199 (396)
T ss_pred eeccc
Confidence 68875
No 66
>PRK13326 pantothenate kinase; Reviewed
Probab=96.26 E-value=0.21 Score=43.87 Aligned_cols=120 Identities=16% Similarity=0.129 Sum_probs=68.0
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEe
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igig 101 (235)
.++|.||+|=|++++++++. ++++...+.++. . ....+++...+.. +.+. ++..+.+
T Consensus 6 ~~~L~IDiGNT~ik~glf~~----------~~l~~~~r~~t~-~-~~t~de~~~~l~~---------~~~~-~i~~vii- 62 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYKD----------NKMQIFCKLKTK-L-DLSFDELYSFLKE---------KFDF-KVNQVFV- 62 (262)
T ss_pred cEEEEEEeCCCeEEEEEEEC----------CEEEEEEEeccC-C-CCCHHHHHHHHhc---------CCCC-CCCEEEE-
Confidence 36899999999999999985 356654444332 2 1345554433333 2232 4666544
Q ss_pred ccCCCCccHHHHHHHHHHhhCCCCceEE--------------------EeCcHHHHHHhhcC--CCCCEEEEEeCCCcee
Q 026689 102 VSGVNHPTDQQRILNWLRDIFPGNVRLY--------------------VHNDALAALASGTM--GKLHGCVLIAGTGTIA 159 (235)
Q Consensus 102 i~G~~~~~~~~~l~~~l~~~~~~~~~v~--------------------v~NDa~~a~~~~~~--g~~~gi~li~GTGs~~ 159 (235)
+... |.-...+.+.+++.++. .|++ +-.|-.++++++.. +.++.+++-+||-+--
T Consensus 63 -sSVv-p~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~y~~~~~~LGaDR~a~~vaA~~~~~~~~~iVID~GTA~T~ 139 (262)
T PRK13326 63 -SSVV-PVIDKVLINVIFSLYKV-KPLFIGFDLNYDLSFNPYNSNKFLLGSDVFANLVGAIEYYNINDALVVDLGTACTI 139 (262)
T ss_pred -EeCc-ccHHHHHHHHHHHHhCC-CcEEEecCCccCceeecCCCCcccccHHHHHHHHHHHHhcCCCCEEEEECCCceEE
Confidence 3343 44445566666665542 2222 33454555655432 3247899999998643
Q ss_pred EEEecCCc
Q 026689 160 YGFTEDGR 167 (235)
Q Consensus 160 ~g~~~~G~ 167 (235)
-.++.+|+
T Consensus 140 D~V~~~g~ 147 (262)
T PRK13326 140 FAVSRQDG 147 (262)
T ss_pred EEEcCCCc
Confidence 33434553
No 67
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=96.22 E-value=0.42 Score=41.37 Aligned_cols=141 Identities=19% Similarity=0.120 Sum_probs=77.1
Q ss_pred EEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEeccC
Q 026689 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (235)
Q Consensus 25 LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G 104 (235)
|.||+|=|++++++++. ++++...+.++... ...++....+...+.+ .+..+.+ +.
T Consensus 2 L~iDiGNT~i~~g~~~~----------~~~~~~~r~~t~~~--~t~de~~~~l~~~~~~----------~i~~v~v--sS 57 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSG----------NKVYQFWRLATNLM--KTYDEHSEFLKELFGK----------SLNKAFI--SS 57 (243)
T ss_pred EEEEECCCcEEEEEEEC----------CEEEEEEEecCCCc--cChHHHHHHHHHHHHh----------hCCEEEE--EE
Confidence 78999999999999985 35555444443322 3555554444443322 2444433 33
Q ss_pred CCCccHHHHHHHHHHhhCCCCceE------------------EEeCcHHHHHHhhcC-CCCCEEEEEeCCCceeEEEecC
Q 026689 105 VNHPTDQQRILNWLRDIFPGNVRL------------------YVHNDALAALASGTM-GKLHGCVLIAGTGTIAYGFTED 165 (235)
Q Consensus 105 ~~~~~~~~~l~~~l~~~~~~~~~v------------------~v~NDa~~a~~~~~~-g~~~gi~li~GTGs~~~g~~~~ 165 (235)
.. |.-...+.+.+++.++. .|. .+--|-.++++++.. -..+.+++-+||-+-.-.+..+
T Consensus 58 Vv-p~~~~~l~~~~~~~~~~-~~~~~~~~~~~gl~~~y~~p~~LG~DR~a~~~aA~~~~~~~~lViD~GTA~Tid~v~~~ 135 (243)
T TIGR00671 58 VV-PELTEAVRNMIPKIKNI-KPEIFFPLVYDGLPNLYKSPKELGIDRVANALAAIKFYGFNVVVVDAGTALTIDLVDQE 135 (243)
T ss_pred cc-CChHHHHHHHHHHHhCC-CcEEECCCccCCcccccCChhhccHHHHHHHHHHHHHcCCCEEEEEcCCceEEEEEcCC
Confidence 33 33334566666666542 222 244455566665531 1247899999997743333335
Q ss_pred CcEEEeCCCCccccccchHHHHHHHHHHHHHHHh
Q 026689 166 GRDARAAGAGPILGDWGSGYGIAAQALTAVIRAY 199 (235)
Q Consensus 166 G~~~~~Gg~G~llgd~gSg~~ig~~al~~~~~~~ 199 (235)
|+.. || --.-|..+.+++|......+
T Consensus 136 g~~~--GG------~I~PG~~l~~~aL~~~Ta~L 161 (243)
T TIGR00671 136 GKFL--GG------AIAPGLGISLHALKDRAAAL 161 (243)
T ss_pred CeEE--EE------EECccHHHHHHHHHhhHhcC
Confidence 5332 21 22345677777776654433
No 68
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=96.20 E-value=0.028 Score=51.28 Aligned_cols=75 Identities=25% Similarity=0.376 Sum_probs=52.3
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCC---ccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeE
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH---NSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~---~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ig 99 (235)
+++|+|+|++++|+++....++ ++-++++....++... .-.+.+.+.+.|.++++++.++++.+ +..+.
T Consensus 1 ~~~~lDIGs~~ik~vv~~~~~~-----~~~~i~~~~~~~~~gi~~G~I~d~~~~~~~i~~al~~~e~~~~~~---i~~v~ 72 (371)
T TIGR01174 1 LIVGLDIGTSKICAIVAEVLED-----GELNIIGVGTHPSRGIKKGVINDIEAAVGSIQRAIEAAELMAGCE---IRSVI 72 (371)
T ss_pred CEEEEEeccceEEEEEEEEcCC-----CCEEEEEEEEecCCCccCcEEEcHHHHHHHHHHHHHHHHHHhCCc---ccEEE
Confidence 3689999999999998865110 0236666666553321 12578888999999999888777764 55677
Q ss_pred EeccCC
Q 026689 100 LAVSGV 105 (235)
Q Consensus 100 igi~G~ 105 (235)
+++||.
T Consensus 73 ~~v~g~ 78 (371)
T TIGR01174 73 VSISGA 78 (371)
T ss_pred EEEccc
Confidence 788875
No 69
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=96.19 E-value=0.33 Score=43.35 Aligned_cols=136 Identities=15% Similarity=0.087 Sum_probs=83.5
Q ss_pred EEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCC--------ccCCHHHHHHHHHHHHHHHHHHcCCCcccce
Q 026689 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH--------NSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (235)
Q Consensus 25 LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~--------~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 96 (235)
|+||--...+-++|++. +++++...+...... .+.....=.+.|..+++++++++++++++|.
T Consensus 1 LaidTs~~~~sval~~~---------~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did 71 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDE---------EGNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIESNVDKSEID 71 (305)
T ss_pred CEEecCccceEEEEEEC---------CCcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 58888888899999985 578888665321100 0123344567888899999999999999999
Q ss_pred eeEEec-cCCCCcc-HHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc--CC---CCCEEEEEeCCCceeEEEecCC-cE
Q 026689 97 AVCLAV-SGVNHPT-DQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MG---KLHGCVLIAGTGTIAYGFTEDG-RD 168 (235)
Q Consensus 97 ~igigi-~G~~~~~-~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~--~g---~~~gi~li~GTGs~~~g~~~~G-~~ 168 (235)
+|+++. ||....- -.....+-|...++ .|+.-.|.-.+-++... .+ .+..++++.| |.--..+..++ +.
T Consensus 72 ~iav~~GPG~~tglrvg~~~Ak~la~~~~--~p~~~v~hl~~ha~~a~~~s~~~~~~~l~l~vsG-G~t~l~~~~~~~~~ 148 (305)
T TIGR00329 72 LIAYTQGPGLGGSLRVGATFARSLALSLD--KPLIGVNHLLGHIYAPRLDTNILQFPFVSLLVSG-GHTQIIAVKGIGDY 148 (305)
T ss_pred EEEEecCCCchhhHHHHHHHHHHHHHHhC--CCEeecccHHHHHHHhhhhcCCCCCCcEEEEEcC-CceEEEEEeCCCcE
Confidence 987754 4433221 13455666666676 78877777765433322 12 3334455666 65433343433 44
Q ss_pred EEeC
Q 026689 169 ARAA 172 (235)
Q Consensus 169 ~~~G 172 (235)
...|
T Consensus 149 ~~l~ 152 (305)
T TIGR00329 149 EVLG 152 (305)
T ss_pred EEee
Confidence 4433
No 70
>PRK09604 UGMP family protein; Validated
Probab=96.05 E-value=0.59 Score=42.31 Aligned_cols=138 Identities=16% Similarity=0.126 Sum_probs=81.1
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCC----Cc----cCCHHHHHHHHHHHHHHHHHHcCCCccc
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN----HN----SVGEDAARETIEKVMADALLKSGSNRSA 94 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~----~~----~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 94 (235)
++|+||--+..+-++|++. +++++......... +- +.....=.+.|..+++++++++++++++
T Consensus 2 ~iLgIdTS~~~~sval~~~---------~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~~~~d 72 (332)
T PRK09604 2 LILGIETSCDETSVAVVDD---------GRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLED 72 (332)
T ss_pred eEEEEEccccceEEEEEEC---------CCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 6899999777788999986 66788765432110 00 1122334678889999999999999999
Q ss_pred ceeeEEec-cCCCCcc-HHHHHHHHHHhhCCCCceEEEeCcHHHHHHhh--cCCCC--CEEEEEeCCCcee-EEEecCCc
Q 026689 95 VRAVCLAV-SGVNHPT-DQQRILNWLRDIFPGNVRLYVHNDALAALASG--TMGKL--HGCVLIAGTGTIA-YGFTEDGR 167 (235)
Q Consensus 95 i~~igigi-~G~~~~~-~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~--~~g~~--~gi~li~GTGs~~-~g~~~~G~ 167 (235)
|.+|+++. ||....- -.....+-|...++ .|+.-.|=-.+-+++. ..+.+ ..++++.| |.-. ..+..+++
T Consensus 73 id~iavt~GPG~~tglrvg~~~Ak~La~~~~--ipl~~v~h~~~ha~~a~~~s~~~~~~lvl~vsG-G~s~~~~~~~~~~ 149 (332)
T PRK09604 73 IDAIAVTAGPGLVGALLVGVSFAKALALALN--KPLIGVNHLEGHLLAPFLEEEPEFPFLALLVSG-GHTQLVLVKGIGD 149 (332)
T ss_pred CCEEEEecCCCcHHhHHHHHHHHHHHHHHhC--CCEEeecCHHHHHHhhhhccCCCCCEEEEEecC-CccEEEEEcCCCc
Confidence 99987765 4443221 13455666766676 6765554433222221 12333 24556667 5422 22223455
Q ss_pred EEEeC
Q 026689 168 DARAA 172 (235)
Q Consensus 168 ~~~~G 172 (235)
+...+
T Consensus 150 ~~~l~ 154 (332)
T PRK09604 150 YELLG 154 (332)
T ss_pred EEEcc
Confidence 55444
No 71
>PRK10854 exopolyphosphatase; Provisional
Probab=96.02 E-value=0.3 Score=46.85 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=84.3
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC---CCCCccCCH--HHHHHHHHHHHHHHHHHcC-CCcccc
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG---CSNHNSVGE--DAARETIEKVMADALLKSG-SNRSAV 95 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~---~~~~~~~~~--~~~~~~i~~~i~~~l~~~~-~~~~~i 95 (235)
..+.+||+|+.++|..|++..++ .-+++.+.+.. .......+. ++.+++.+++++.+.+... ...+++
T Consensus 11 ~~~A~IDIGSNSirL~I~e~~~~------~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~~~~~~v~~v 84 (513)
T PRK10854 11 QEFAAVDLGSNSFHMVIARVVDG------AMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAERLQGFSPANV 84 (513)
T ss_pred CEEEEEEeccchheEEEEEecCC------cEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 37899999999999999996211 22444433322 111111121 4556677777776544331 222345
Q ss_pred eeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHH---hhc--C-CCCCEEEEEeCCCceeEEEecCCc
Q 026689 96 RAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SGT--M-GKLHGCVLIAGTGTIAYGFTEDGR 167 (235)
Q Consensus 96 ~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~---~~~--~-g~~~gi~li~GTGs~~~g~~~~G~ 167 (235)
.+ ++.+.+=+..+...+.+.+++.++ .++.|.+..+=|.+ |.. . ...+++++=+|.||-=..+..+++
T Consensus 85 ~~--vATsAlReA~N~~~fl~~i~~~tG--l~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~ 158 (513)
T PRK10854 85 CI--VGTHTLRQALNATDFLKRAEKVIP--YPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFE 158 (513)
T ss_pred EE--EehHHHHcCcCHHHHHHHHHHHHC--CCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCC
Confidence 44 577777666677788888888888 78988888774433 221 1 123588999999996665555664
No 72
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=95.98 E-value=0.028 Score=52.42 Aligned_cols=70 Identities=23% Similarity=0.251 Sum_probs=46.8
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCc------------c--CCHH----HHHHHHHHHHHHH
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN------------S--VGED----AARETIEKVMADA 84 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~------------~--~~~~----~~~~~i~~~i~~~ 84 (235)
|=++||+|+|++.+.++|.. .|++++..+...++.. . .+.+ .+++.|.++++++
T Consensus 2 ~GiAvDiGTTti~~~L~dl~--------~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l 73 (412)
T PF14574_consen 2 YGIAVDIGTTTIAAYLVDLE--------TGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEEL 73 (412)
T ss_dssp EEEEEEE-SSEEEEEEEETT--------T--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcchhheeeEEEECC--------CCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999984 7999998876422110 1 1122 3567777788888
Q ss_pred HHHcCCCcccceeeEE
Q 026689 85 LLKSGSNRSAVRAVCL 100 (235)
Q Consensus 85 l~~~~~~~~~i~~igi 100 (235)
+.++++++++|..+++
T Consensus 74 ~~~~gi~~~~I~~i~i 89 (412)
T PF14574_consen 74 LEKAGISPEDIYEIVI 89 (412)
T ss_dssp HHHHT--GGGEEEEEE
T ss_pred HHHcCCCHHHeEEEEE
Confidence 8888999999987654
No 73
>PRK13322 pantothenate kinase; Reviewed
Probab=95.63 E-value=0.25 Score=42.84 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=61.0
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEecc
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~ 103 (235)
+|.||+|=|++|+++++. +++++.+.+ . ....+++...+. .+ +...+..+.+ +
T Consensus 2 ~L~IDiGNT~iK~~l~~~---------~~~~~~~~~---~---~~t~~~~~~~l~----~~------~~~~i~~v~v--s 54 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN---------GGQIIEHGA---H---LDSPAELLLGLA----NL------ASLAPTRCRI--V 54 (246)
T ss_pred EEEEEeCCCcEEEEEEcC---------CCchhhhcc---c---cCCHHHHHHHHH----hC------CccCCCEEEE--E
Confidence 799999999999999985 345443222 1 123344333332 11 1124666544 3
Q ss_pred CCCCccHHHHHHHHHHhhCCCCceEEEeCc-------------------HHHHHHhhcC-CCCCEEEEEeCCCceeEEEe
Q 026689 104 GVNHPTDQQRILNWLRDIFPGNVRLYVHND-------------------ALAALASGTM-GKLHGCVLIAGTGTIAYGFT 163 (235)
Q Consensus 104 G~~~~~~~~~l~~~l~~~~~~~~~v~v~ND-------------------a~~a~~~~~~-g~~~gi~li~GTGs~~~g~~ 163 (235)
....+.-...+.+.+++.++. .+.++..+ -.++++++.. -..+.+++-+||-+-.-.+.
T Consensus 55 SV~p~~~~~~l~~~l~~~~~~-~~~~v~~~~~~~gv~~~y~~p~~LG~DR~~~~~aA~~~~~~~~lViD~GTA~TiD~v~ 133 (246)
T PRK13322 55 SVLSEEETARLVAILEKRLGI-PVVFAKVAAELAGVRNGYEDPEQLGIDRWLALLGAFHLAKNACLVIDCGTAVTIDLVD 133 (246)
T ss_pred eCCCHHHHHHHHHHHHHHhCC-CeEEEecCCcCCCceecCCChhhccHHHHHHHHHHHHHcCCCEEEEEcCCeeEEEEEc
Confidence 343333345677777776652 23333333 2344444431 12357788889876433333
Q ss_pred cCCc
Q 026689 164 EDGR 167 (235)
Q Consensus 164 ~~G~ 167 (235)
.+|+
T Consensus 134 ~~g~ 137 (246)
T PRK13322 134 ADGQ 137 (246)
T ss_pred CCCc
Confidence 3554
No 74
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=95.62 E-value=0.45 Score=42.31 Aligned_cols=136 Identities=17% Similarity=0.124 Sum_probs=81.3
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCC---CCCccCC--HHHHHHHHHHHHHHHHHHcC-CCccccee
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC---SNHNSVG--EDAARETIEKVMADALLKSG-SNRSAVRA 97 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~---~~~~~~~--~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ 97 (235)
+.+||+|+.++|+.+++..++ ..+++.+.+... ......+ .++.++++.++++++.+... ....++.
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~------~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~~~~~v~~i~- 74 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEG------SLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELLRGFPVDEVR- 74 (300)
T ss_pred eEEEEecCCeeeEEEEEecCC------cEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCeEE-
Confidence 578999999999999996211 224444333221 1111111 24556666677766654432 1222344
Q ss_pred eEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHH---hhc--CCCCCEEEEEeCCCceeEEEecCCcEE
Q 026689 98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SGT--MGKLHGCVLIAGTGTIAYGFTEDGRDA 169 (235)
Q Consensus 98 igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~---~~~--~g~~~gi~li~GTGs~~~g~~~~G~~~ 169 (235)
+++.+.+-...+...+.+.+++.++ .++.|.+..+=|.+ +.. ....+++++=+|.||.-..+..++++.
T Consensus 75 -~vaTsa~R~A~N~~~~~~~i~~~tg--i~i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~ 148 (300)
T TIGR03706 75 -AVATAALRDAKNGPEFLREAEAILG--LPIEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG 148 (300)
T ss_pred -EEEcHHHHcCCCHHHHHHHHHHHHC--CCeEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe
Confidence 3677777555666778888888887 67777777664433 221 222457899999999777666566543
No 75
>PRK13331 pantothenate kinase; Reviewed
Probab=95.54 E-value=0.81 Score=39.93 Aligned_cols=138 Identities=16% Similarity=0.007 Sum_probs=76.0
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEec
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi 102 (235)
.+|.||+|=|++++++++. .+++..-+ ++.. ...+ +..++...++.+++|..+.++
T Consensus 8 ~~L~iDiGNT~~~~g~f~~----------~~~~~~~r---t~~~-~t~d---------~~~~l~~~~~~~~~i~~~iis- 63 (251)
T PRK13331 8 EWLALMIGNSRLHWGYFSG----------ETLVKTWD---TPHL-DESI---------IQLLLPGQTLLIVAPNPLVIA- 63 (251)
T ss_pred cEEEEEeCCCcEEEEEEEC----------CEEEEEEE---cCCc-chHH---------HHHHHHHcCCCccccCEEEEE-
Confidence 5899999999999999985 34554323 2121 1222 555666666666677776443
Q ss_pred cCCCCccHHHHHHHHHHhhCCCCceE------------EEeCcHHHHHHhhcC-CCCCEEEEEeCCCceeEEEecCCcEE
Q 026689 103 SGVNHPTDQQRILNWLRDIFPGNVRL------------YVHNDALAALASGTM-GKLHGCVLIAGTGTIAYGFTEDGRDA 169 (235)
Q Consensus 103 ~G~~~~~~~~~l~~~l~~~~~~~~~v------------~v~NDa~~a~~~~~~-g~~~gi~li~GTGs~~~g~~~~G~~~ 169 (235)
....... ..+ ++.++. .++ .+--|-.++++++.. -..+.+|+-+||-.---.++.+|+..
T Consensus 64 -SVVP~~~-~~~----~~~~~~-~~~~v~~~~l~~~yp~lG~DR~~~~vaA~~~~~~~~iVID~GTA~T~D~V~~~g~~~ 136 (251)
T PRK13331 64 -SVVPQQT-ELW----QTYPNV-RLITLDDIPLNNLYPTLGIDRALALWGAGQTYGFPCLVIDAGTALTFTGVDSDRTLV 136 (251)
T ss_pred -ecCccHH-HHH----HHhcCC-ceEEecCCCCccCCCCccHHHHHHHHHHHHHhCCCEEEEECCCceEEEEEcCCCcEE
Confidence 3332211 122 333321 222 445566666665532 23478999999976433333444332
Q ss_pred EeCCCCccccccchHHHHHHHHHHHHHHHh
Q 026689 170 RAAGAGPILGDWGSGYGIAAQALTAVIRAY 199 (235)
Q Consensus 170 ~~Gg~G~llgd~gSg~~ig~~al~~~~~~~ 199 (235)
|| --.-|..+.++||......+
T Consensus 137 --GG------~I~PG~~l~~~AL~~~Ta~L 158 (251)
T PRK13331 137 --GG------AILPGLGLQLRSLADKTAAL 158 (251)
T ss_pred --EE------EECccHHHHHHHHHHhhhcC
Confidence 22 22345777777777655443
No 76
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=95.50 E-value=0.33 Score=42.98 Aligned_cols=119 Identities=14% Similarity=0.116 Sum_probs=62.9
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEecc
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~ 103 (235)
.+|||+|||-+|.+..+. +++++.... ++ +..+++++-+.+ ..... ..+.. +.++
T Consensus 2 ~iGiDiGgT~~Kiv~~~~---------~~~~~f~~~-~~-----~~~~~~~~~l~~----~~~~~----~~~~~--i~~T 56 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEP---------KGRRKFKTF-ET-----TNIDKFIEWLKN----QIHRH----SRITT--LCAT 56 (279)
T ss_pred eEEEEeCcceEEEEEEcC---------CCcEEEEEe-ec-----ccHHHHHHHHHH----HHHhh----cCceE--EEEE
Confidence 589999999999999987 777765443 22 234444444443 22222 12333 3446
Q ss_pred CCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhh--c------CCCCCEEEEEeCCCceeEEEecCCcEEEeCCC
Q 026689 104 GVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG--T------MGKLHGCVLIAGTGTIAYGFTEDGRDARAAGA 174 (235)
Q Consensus 104 G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~--~------~g~~~gi~li~GTGs~~~g~~~~G~~~~~Gg~ 174 (235)
|-.. ..+.+.+...++ .++.-..-..+...+. . ....+.+++.+|||+--. .+...+..|.||-
T Consensus 57 GgGa----~k~~~~~~~~~~--v~~~k~dE~~a~~~g~~~ll~~~~~~~~~p~llvnIGsGvSi~-~v~~~~~~Rv~Gt 128 (279)
T TIGR00555 57 GGGA----FKFAELIYESAG--IQLHKFDEFDALIQGLNYLLKEEPKDDIYPYLLVNIGTGTSIL-YVDGDNYERVGGT 128 (279)
T ss_pred CCcH----HHHHHHhccccC--CcccchhHHHHHHHHHHHHhhcccCCCCCceEEEEecCCeEEE-EEcCccEEEEcCc
Confidence 6532 345556655553 3332222223322221 1 122356888889997433 3322256676664
No 77
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=95.41 E-value=0.19 Score=39.82 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=57.7
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEec
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi 102 (235)
.+||+|.|.-++=+++.|. .+.+..-...-. . .+....++.|.+.+++ . ++..|.||+
T Consensus 5 ~iLalD~G~kriGvAv~d~---------~~~~a~pl~~i~--~--~~~~~~~~~l~~~i~~----~-----~i~~iVvGl 62 (138)
T PRK00109 5 RILGLDVGTKRIGVAVSDP---------LGGTAQPLETIK--R--NNGTPDWDRLEKLIKE----W-----QPDGLVVGL 62 (138)
T ss_pred cEEEEEeCCCEEEEEEecC---------CCCEEcCEEEEE--c--CCCchHHHHHHHHHHH----h-----CCCEEEEec
Confidence 4899999999999999997 444322111111 1 1112234555554443 2 467888999
Q ss_pred cCCCCccH------HHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 026689 103 SGVNHPTD------QQRILNWLRDIFPGNVRLYVHNDALAALA 139 (235)
Q Consensus 103 ~G~~~~~~------~~~l~~~l~~~~~~~~~v~v~NDa~~a~~ 139 (235)
|=..+.+. ...+.+.|++.++ .||...+-......
T Consensus 63 P~~~~G~~~~~~~~v~~f~~~L~~~~~--~~v~~~DEr~TT~~ 103 (138)
T PRK00109 63 PLNMDGTEGPRTERARKFANRLEGRFG--LPVVLVDERLSTVE 103 (138)
T ss_pred cCCCCCCcCHHHHHHHHHHHHHHHHhC--CCEEEEcCCcCHHH
Confidence 86643332 2467778877776 78988887765543
No 78
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=95.19 E-value=0.1 Score=47.03 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=74.9
Q ss_pred EEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEeccC
Q 026689 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (235)
Q Consensus 25 LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G 104 (235)
||+|+||-++|+++++. +|.+....+.+++-| ++.++ |.+++.+++++.+. ...+++-++|
T Consensus 1 ~G~DiGGA~~K~a~~~~---------~g~~~~v~~~~~plW--~~~~~----L~~~l~~~~~~~~~----~~~~avtMTg 61 (318)
T TIGR03123 1 LGIDIGGANTKAAELDE---------DGRIKEVHQLYCPLW--KGNDK----LAETLKEISQDLSS----ADNVAVTMTG 61 (318)
T ss_pred CccccccceeeeEEecC---------CCceeEEEEecCccc--CCchH----HHHHHHHHHHhcCc----cceEEEEeeh
Confidence 58999999999999987 787776666655544 56655 44455555544321 1345567788
Q ss_pred CC-C----ccH-HHHHHHHHHhhCCCCceE-EEeCcHHHH------------HHhh--------cCCCCCEEEEEeCCCc
Q 026689 105 VN-H----PTD-QQRILNWLRDIFPGNVRL-YVHNDALAA------------LASG--------TMGKLHGCVLIAGTGT 157 (235)
Q Consensus 105 ~~-~----~~~-~~~l~~~l~~~~~~~~~v-~v~NDa~~a------------~~~~--------~~g~~~gi~li~GTGs 157 (235)
=- + ..+ -..+.+.+++.|+ .++ ++.+|.-.. +.++ ....++++.+=+|.=+
T Consensus 62 ELaD~f~~r~~GV~~i~~~~~~~~~--~~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~la~~~~~~I~~DmGGTT 139 (318)
T TIGR03123 62 ELADCFEDKAEGVEFILAAVESAFG--SPVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLIAKRIPECLFVDMGSTT 139 (318)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHhcC--CCeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHHHhcCCCEEEEEcCccc
Confidence 52 1 122 3467788888897 444 556666311 0000 1235677877666323
Q ss_pred eeEEEecCCcEEEe
Q 026689 158 IAYGFTEDGRDARA 171 (235)
Q Consensus 158 ~~~g~~~~G~~~~~ 171 (235)
.=..++.+|+....
T Consensus 140 tDi~~i~~G~p~~~ 153 (318)
T TIGR03123 140 TDIIPIIDGEVAAK 153 (318)
T ss_pred eeeEEecCCEeeee
Confidence 22345678876543
No 79
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.07 E-value=0.98 Score=43.15 Aligned_cols=138 Identities=14% Similarity=0.088 Sum_probs=84.2
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC---CCCCccCC--HHHHHHHHHHHHHHHHHHc-CCCcccc
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG---CSNHNSVG--EDAARETIEKVMADALLKS-GSNRSAV 95 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~---~~~~~~~~--~~~~~~~i~~~i~~~l~~~-~~~~~~i 95 (235)
.++..||+|+.++|..|++..++ .-+++...+.. .......+ .++.+++..++++.+.+.. .....++
T Consensus 6 ~~~A~IDIGSNSirL~I~~~~~~------~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~~~~~~v~~i 79 (496)
T PRK11031 6 SLYAAIDLGSNSFHMLVVREVAG------SIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAERLQDIPPSQI 79 (496)
T ss_pred CEEEEEEccccceeEEEEEecCC------ceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 47899999999999999996211 22333333221 10111112 1455667777777655432 1222345
Q ss_pred eeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHH---hhc---CCCCCEEEEEeCCCceeEEEecCCcEE
Q 026689 96 RAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SGT---MGKLHGCVLIAGTGTIAYGFTEDGRDA 169 (235)
Q Consensus 96 ~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~---~~~---~g~~~gi~li~GTGs~~~g~~~~G~~~ 169 (235)
.+ ++.+.+-+..+...+.+.+++.++ .++.|.+..+=|.+ |.. ...++++++=+|.||--..+..++++.
T Consensus 80 ~~--vATsAvReA~N~~~fl~~i~~~tG--l~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~ 155 (496)
T PRK11031 80 RV--VATATLRLAVNADEFLAKAQEILG--CPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT 155 (496)
T ss_pred EE--EEeHHHHcCcCHHHHHHHHHHHHC--CCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee
Confidence 54 577777666677788888888888 78988888774433 221 122357899999999656555565543
No 80
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=94.96 E-value=0.15 Score=47.61 Aligned_cols=73 Identities=23% Similarity=0.299 Sum_probs=54.1
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCC--CEEEEEEeCCCCC---ccCCHHHHHHHHHHHHHHHHHHcCCCccccee
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNH---NSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g--~il~~~~~~~~~~---~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 97 (235)
++.++|+|++|+++.+..... +| ++++....++... .-.+.+.+.+.|++++.++...++. +++.
T Consensus 7 ~iv~LDIGTskV~~lVge~~~-------~g~i~iig~g~~~SrGik~G~I~di~~~~~sI~~av~~AE~mag~---~i~~ 76 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRP-------DGRLNIIGVGSHPSRGIKKGVIVDLDAAAQSIKKAVEAAERMAGC---EIKS 76 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcC-------CCeEEEEeeecccCcccccceEEcHHHHHHHHHHHHHHHHHhcCC---Ccce
Confidence 799999999999999887621 33 4444433332211 1258899999999999999999887 4677
Q ss_pred eEEeccCC
Q 026689 98 VCLAVSGV 105 (235)
Q Consensus 98 igigi~G~ 105 (235)
+.++++|-
T Consensus 77 v~vs~sG~ 84 (418)
T COG0849 77 VIVSLSGN 84 (418)
T ss_pred EEEEeccc
Confidence 88999994
No 81
>PLN02666 5-oxoprolinase
Probab=94.95 E-value=0.12 Score=54.58 Aligned_cols=72 Identities=13% Similarity=0.066 Sum_probs=45.3
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHH-----HHcCCCcccce
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADAL-----LKSGSNRSAVR 96 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l-----~~~~~~~~~i~ 96 (235)
+|.++||+|||-|.++++|. ++.-+...+.+++.+. ...+.+++-|.+++++++ .+.++++++|.
T Consensus 9 ~~rigIDvGGTFTD~v~~~~---------~~~~~~~~K~~sttp~-d~~~gv~~Gi~~~l~~~~~~~~~~~~~~~~~~i~ 78 (1275)
T PLN02666 9 KFRFCIDRGGTFTDVYAEVP---------GGSDFRVLKLLSVDPA-NYDDAPREGIRRILEEVTGKKIPRSAKIPTERIE 78 (1275)
T ss_pred CEEEEEECCcCCEeEEEEec---------CCCeEEEEEeCCCCCC-ChhHHHHHHHHHHHHHHhcCCcccccCCChHHcc
Confidence 48999999999999999987 5543445555543231 122346677777666654 23355555666
Q ss_pred eeEEecc
Q 026689 97 AVCLAVS 103 (235)
Q Consensus 97 ~igigi~ 103 (235)
.|..|.+
T Consensus 79 ~v~hGTT 85 (1275)
T PLN02666 79 WIRMGTT 85 (1275)
T ss_pred EEEEech
Confidence 6655544
No 82
>PF13941 MutL: MutL protein
Probab=94.53 E-value=0.17 Score=47.87 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=43.3
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCC
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGS 90 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~ 90 (235)
+|.+|+|+|.||+.++|...+ +.+++++.+.+++- .+..+..-+.++++++.++.+.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~------~~~~ig~a~apTTv----~~~Dv~~G~~~A~~~l~~~~~~ 58 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDG------EPRLIGQAEAPTTV----EPGDVTIGLNNALEQLEEQTPA 58 (457)
T ss_pred EEEEEeCCcceEEeEEeccCC------ccEEEEEEeCCCCc----CcccHHHHHHHHHHHHHHhcCC
Confidence 689999999999999993222 88999999987663 1245666777778777776654
No 83
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=94.38 E-value=0.4 Score=38.20 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=58.0
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHH-HHHHHHHHHHHHHHHHcCCCcccceeeEEe
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGED-AARETIEKVMADALLKSGSNRSAVRAVCLA 101 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~-~~~~~i~~~i~~~l~~~~~~~~~i~~igig 101 (235)
.+||+|.|.-++=+++.|. .+ .+++.. .+...+... ..++.+.+.+++- ++..|.+|
T Consensus 3 ~ilalD~G~KrIGvA~sd~---------~~-~~A~pl---~~i~~~~~~~~~~~~l~~li~~~---------~~~~vVVG 60 (141)
T COG0816 3 RILALDVGTKRIGVAVSDI---------LG-SLASPL---ETIKRKNGKPQDFNALLKLVKEY---------QVDTVVVG 60 (141)
T ss_pred eEEEEecCCceEEEEEecC---------CC-ccccch---hhheeccccHhhHHHHHHHHHHh---------CCCEEEEe
Confidence 6899999999999999987 33 222221 112112222 4566666655553 56788899
Q ss_pred ccCCCCccH------HHHHHHHHHhhCCCCceEEEeCcHHHH
Q 026689 102 VSGVNHPTD------QQRILNWLRDIFPGNVRLYVHNDALAA 137 (235)
Q Consensus 102 i~G~~~~~~------~~~l~~~l~~~~~~~~~v~v~NDa~~a 137 (235)
+|=-.+.+. ...+.+.|+++|+ .||.+..--...
T Consensus 61 lP~~m~g~~~~~~~~~~~f~~~L~~r~~--lpv~l~DERltT 100 (141)
T COG0816 61 LPLNMDGTEGPRAELARKFAERLKKRFN--LPVVLWDERLST 100 (141)
T ss_pred cCcCCCCCcchhHHHHHHHHHHHHHhcC--CCEEEEcCccCH
Confidence 997543221 3467888888887 788777655533
No 84
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=94.19 E-value=3.7 Score=39.34 Aligned_cols=136 Identities=19% Similarity=0.170 Sum_probs=82.3
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCC-CCccCCHHH----HHHHHHHHHHHHHHHcCCCccccee
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-NHNSVGEDA----ARETIEKVMADALLKSGSNRSAVRA 97 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~-~~~~~~~~~----~~~~i~~~i~~~l~~~~~~~~~i~~ 97 (235)
++||||--...|-++|++. +|+++........ .+-..-|+. =.+.|-.+++++++++++.+.+|.+
T Consensus 2 ~il~iets~~~~s~a~~~~---------~~~~~~~~~~~~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~ 72 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDS---------DGDVLFNESDPYKPPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDL 72 (535)
T ss_pred EEEEEEccccceEEEEEeC---------CCcEEEEEEeeccCCcCCCChHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCE
Confidence 6999999999999999986 6778877654211 111122333 3667889999999999998889999
Q ss_pred eEEeccCCCCcc---HHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc--CC-CCCEEEEEeCCCceeEEEecCCcEEEe
Q 026689 98 VCLAVSGVNHPT---DQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MG-KLHGCVLIAGTGTIAYGFTEDGRDARA 171 (235)
Q Consensus 98 igigi~G~~~~~---~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~--~g-~~~gi~li~GTGs~~~g~~~~G~~~~~ 171 (235)
|+++ -||.... -.....+-|...++ .|+.-.|=-.+=+++.. .+ ....++++.|-.+ -..+..+++....
T Consensus 73 iav~-~gPg~~~~l~vg~~~ak~la~~~~--~~~~~v~h~~aH~~~a~~~~~~~~~l~l~vsGg~t-~~~~~~~~~~~~l 148 (535)
T PRK09605 73 VAFS-QGPGLGPCLRVVATAARALALSLD--VPLIGVNHCVAHVEIGRLTTGAEDPVTLYVSGGNT-QVLAYLNGRYRVF 148 (535)
T ss_pred EEEC-CCCCcHhhHHHHHHHHHHHHHHhC--CCeecccHHHHHHHHhhhccCCCCCeEEEEecCCe-EEEEEcCCeEEEE
Confidence 8764 3443322 24456677777776 67766654443222221 22 2235555555443 2334444444333
No 85
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=94.16 E-value=0.17 Score=39.89 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=56.3
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCE-EEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEe
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPV-LARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~i-l~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igig 101 (235)
.+||+|.|..++=+++.|. .+.+ .........+ .+..++.|.+.+++ . ++..|.||
T Consensus 2 riL~lD~G~kriGiAvsd~---------~~~~a~pl~~i~~~~-----~~~~~~~l~~li~~----~-----~i~~iVvG 58 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDP---------LGIIASPLETIPRRN-----REKDIEELKKLIEE----Y-----QIDGIVVG 58 (135)
T ss_dssp EEEEEEECSSEEEEEEEET---------TTSSEEEEEEEEECC-----CCCCHHHHHHHHHH----C-----CECEEEEE
T ss_pred eEEEEEeCCCeEEEEEecC---------CCCeEeeeEEEECCC-----CchHHHHHHHHHHH----h-----CCCEEEEe
Confidence 5899999999999999997 4432 1111111111 12344455554444 2 57788899
Q ss_pred ccCCCCcc------HHHHHHHHHHhhCCCCceEEEeCcHHHH
Q 026689 102 VSGVNHPT------DQQRILNWLRDIFPGNVRLYVHNDALAA 137 (235)
Q Consensus 102 i~G~~~~~------~~~~l~~~l~~~~~~~~~v~v~NDa~~a 137 (235)
+|=-.+.+ ....+.+.|++.++. .||...+--...
T Consensus 59 lP~~~~G~~~~~~~~v~~f~~~L~~~~~~-ipV~~~DEr~TT 99 (135)
T PF03652_consen 59 LPLNMDGSESEQARRVRKFAEELKKRFPG-IPVILVDERLTT 99 (135)
T ss_dssp EEBBCTSSC-CCHHHHHHHHHHHHHHH-T-SEEEEEECSCSH
T ss_pred CCcccCCCccHHHHHHHHHHHHHHHhcCC-CcEEEECCChhH
Confidence 98543222 235677888888843 899888766544
No 86
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.10 E-value=0.2 Score=49.56 Aligned_cols=50 Identities=16% Similarity=0.038 Sum_probs=35.3
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHH
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMAD 83 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 83 (235)
++.+|||.|||.|.+++++. ++.++...+..++ + ..+..+...+...+..
T Consensus 2 ~~~iGID~GGTfTDaV~~~~---------~~g~~~~~K~lTt-P--~~~~~~~~~~~~~~~~ 51 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDE---------DGGVLATIKVLTT-P--DLPSGIVNAGIRLALE 51 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeC---------CCCEEEEEEccCC-C--CchhhHHHHHHHHHhh
Confidence 37899999999999999998 5557887777665 4 3455544444444433
No 87
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=94.04 E-value=3.8 Score=35.77 Aligned_cols=142 Identities=20% Similarity=0.127 Sum_probs=78.6
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEecc
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~ 103 (235)
+|.||+|-|++++++++. ++....-+..+... ...+++-.. +.+++..+ ...++.++.+ +
T Consensus 2 ~L~iDiGNT~~~~a~~~~----------~~~~~~~r~~t~~~--~~~del~~~----~~~l~~~~--~~~~~~~~~i--s 61 (251)
T COG1521 2 LLLIDIGNTRIVFALYEG----------GKVVQTWRLATEDL--LTEDELGLQ----LHNLFDGN--SVRDIDGIVI--S 61 (251)
T ss_pred eEEEEeCCCeEEEEEecC----------CeEEEEEeeccccc--ccHHHHHHH----HHHHhccc--ccccccccee--e
Confidence 689999999999999873 55555555443222 334443333 33344333 3346777655 4
Q ss_pred CCCCccHHHHHHHHHHhhCCCCce-------------------EEEeCcHHHHHHhhcC--CCCCEEEEEeCCCceeEEE
Q 026689 104 GVNHPTDQQRILNWLRDIFPGNVR-------------------LYVHNDALAALASGTM--GKLHGCVLIAGTGTIAYGF 162 (235)
Q Consensus 104 G~~~~~~~~~l~~~l~~~~~~~~~-------------------v~v~NDa~~a~~~~~~--g~~~gi~li~GTGs~~~g~ 162 (235)
... |.-...+...+++.|+. .| -.+--|--++++++.+ + ...+||-+||-.---.+
T Consensus 62 svv-p~~~~~~~~~~~~~f~~-~~~~~~~~~~~~g~~~~~~~p~elG~DR~~n~vaA~~~~~-~~~vVVD~GTA~Tid~v 138 (251)
T COG1521 62 SVV-PPLGIFLEAVLKEYFKV-KPLVVISPKQLLGIRVLYDNPEELGADRIANAVAAYHKYG-KAVVVVDFGTATTIDLV 138 (251)
T ss_pred ccC-ccHHHHHHHHHHHHhcc-CceeeechhhccCCcccCCChhhhcHHHHHHHHHHHHHcC-CcEEEEEcCCeEEEEEE
Confidence 444 44444566666666642 22 2333455556665432 4 34889999997643333
Q ss_pred ecCCcEEEeCCCCccccccchHHHHHHHHHHHHH
Q 026689 163 TEDGRDARAAGAGPILGDWGSGYGIAAQALTAVI 196 (235)
Q Consensus 163 ~~~G~~~~~Gg~G~llgd~gSg~~ig~~al~~~~ 196 (235)
..+|+. .| |--..|..+..+++....
T Consensus 139 ~~~~~~--lG------G~I~PGi~l~~~aL~~~a 164 (251)
T COG1521 139 DEGGRY--LG------GAILPGITLSFEALFARA 164 (251)
T ss_pred cCCCcE--ee------eEeccCHHHHHHHHHHHH
Confidence 333222 11 233456777777776443
No 88
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=93.87 E-value=1.4 Score=40.04 Aligned_cols=92 Identities=21% Similarity=0.289 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHH-HcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCEEEEE
Q 026689 74 RETIEKVMADALL-KSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152 (235)
Q Consensus 74 ~~~i~~~i~~~l~-~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~g~~~gi~li 152 (235)
|+.+...++.++. ..+..+.+ ..+.+..|-.........+.+.|-+.++. ..+.+.++..+++++. +..++++|-
T Consensus 74 ~~~~e~i~~~~~~~~l~~~~~~-~~vll~~p~~~~~~~r~~~~e~lfE~~~~-~~v~~~~~~~~a~~~~--g~~~~lVVD 149 (373)
T smart00268 74 WDDMEKIWDYTFFNELRVEPEE-HPVLLTEPPMNPKSNREKILEIMFETFNF-PALYIAIQAVLSLYAS--GRTTGLVID 149 (373)
T ss_pred HHHHHHHHHHHHhhhcCCCCcc-CeeEEecCCCCCHHHHHHHHHHhhccCCC-CeEEEeccHHHHHHhC--CCCEEEEEe
Confidence 6666777777776 34444433 34556677666555666777777666763 4688999999998853 456899999
Q ss_pred eCCCceeEEEecCCcEE
Q 026689 153 AGTGTIAYGFTEDGRDA 169 (235)
Q Consensus 153 ~GTGs~~~g~~~~G~~~ 169 (235)
+|.+..-...+.+|...
T Consensus 150 iG~~~t~v~pv~~G~~~ 166 (373)
T smart00268 150 SGDGVTHVVPVVDGYVL 166 (373)
T ss_pred cCCCcceEEEEECCEEc
Confidence 99987555555688654
No 89
>PRK13328 pantothenate kinase; Reviewed
Probab=93.70 E-value=1.8 Score=37.76 Aligned_cols=115 Identities=23% Similarity=0.199 Sum_probs=60.3
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEecc
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~ 103 (235)
+|-||+|-|.+|+++++. +++++....... .....+. . + +.+.. .+..+. ++
T Consensus 3 ~LliDiGNTriKwa~~~~---------~~~~~~~~~~~~-----~~~~~~~----~---~-~~~~~----~~~~i~--vs 54 (255)
T PRK13328 3 ILLIDAGNSRIKWAWADA---------GRPWVHSGAFAH-----GLDAALA----P---D-WSALP----APRGAW--IS 54 (255)
T ss_pred EEEEEeCccceeEEEEcC---------CCceeecchhcc-----cchHHHH----H---H-HHhCC----CCCeEE--EE
Confidence 799999999999999996 545554332211 0111111 1 1 22211 234433 34
Q ss_pred CCCCccHHHHHHHHHHhhCC-CCceEEEe-------------------CcHHHHHHhhcC--CCCCEEEEEeCCCceeEE
Q 026689 104 GVNHPTDQQRILNWLRDIFP-GNVRLYVH-------------------NDALAALASGTM--GKLHGCVLIAGTGTIAYG 161 (235)
Q Consensus 104 G~~~~~~~~~l~~~l~~~~~-~~~~v~v~-------------------NDa~~a~~~~~~--g~~~gi~li~GTGs~~~g 161 (235)
....|.....+.+.+++.|+ . .+.++. -|-.++++++.. ..++.+|+-+||-+-.-.
T Consensus 55 SV~~p~~~~~l~~~l~~~~~~~-~~~~v~~~~~~~gl~~~Y~~p~~LG~DR~~a~vaA~~~~~~~~~lViD~GTA~TiD~ 133 (255)
T PRK13328 55 NVAGPAVAARLDALLAARWPGL-PVTWVRSRAAQCGVRNGYREPAQLGSDRWAGLIGARAAFPGEHLLIATFGTATTLDA 133 (255)
T ss_pred ecCChhHHHHHHHHHHHHhCCC-CeEEEecCccCCCceeCCCChhhccHHHHHHHHHHHHhcCCCCEEEEEcCCceEEEE
Confidence 44445555577778877764 2 233332 222334444432 234788899999764333
Q ss_pred EecCCc
Q 026689 162 FTEDGR 167 (235)
Q Consensus 162 ~~~~G~ 167 (235)
+..+|+
T Consensus 134 v~~~g~ 139 (255)
T PRK13328 134 LRADGR 139 (255)
T ss_pred EcCCCc
Confidence 334553
No 90
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=93.67 E-value=0.47 Score=40.25 Aligned_cols=131 Identities=18% Similarity=0.160 Sum_probs=74.7
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCC----CCCccCCHHHHHHHHHHHHHHHHHHcCCCccccee
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC----SNHNSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~----~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 97 (235)
++++|+|.|+..+-..+.|. ++++++-...-. ... -.+.-+.++.++.....+.++.|+. +.-
T Consensus 29 k~~vGVDLGT~~iV~~vlD~---------d~~Pvag~~~~advVRDGi-Vvdf~eaveiVrrlkd~lEk~lGi~---~th 95 (277)
T COG4820 29 KLWVGVDLGTCDIVSMVLDR---------DGQPVAGCLDWADVVRDGI-VVDFFEAVEIVRRLKDTLEKQLGIR---FTH 95 (277)
T ss_pred ceEEEeecccceEEEEEEcC---------CCCeEEEEehhhhhhccce-EEehhhHHHHHHHHHHHHHHhhCeE---eee
Confidence 58999999999999999999 999987543210 001 1345566666666666666666653 322
Q ss_pred eEEec-cCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCEEEEEeCCCceeEEEecCCcEEE
Q 026689 98 VCLAV-SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (235)
Q Consensus 98 igigi-~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~g~~~gi~li~GTGs~~~g~~~~G~~~~ 170 (235)
..-++ ||.... +.......++. -+ ..|.-.=|--.|+.. ..+-.++.|+-+|.|.-|..++.+|++..
T Consensus 96 a~taiPPGt~~~-~~ri~iNViES-AG--levl~vlDEPTAaa~-vL~l~dg~VVDiGGGTTGIsi~kkGkViy 164 (277)
T COG4820 96 AATAIPPGTEQG-DPRISINVIES-AG--LEVLHVLDEPTAAAD-VLQLDDGGVVDIGGGTTGISIVKKGKVIY 164 (277)
T ss_pred ccccCCCCccCC-CceEEEEeecc-cC--ceeeeecCCchhHHH-HhccCCCcEEEeCCCcceeEEEEcCcEEE
Confidence 11122 333211 11111122222 22 333333333333221 23456899999999987888889997653
No 91
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=93.67 E-value=0.53 Score=36.83 Aligned_cols=91 Identities=20% Similarity=0.192 Sum_probs=55.9
Q ss_pred EEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEeccC
Q 026689 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (235)
Q Consensus 25 LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G 104 (235)
||||.|..++=+++.|. .+.+ ++... + ....+....++.|.+ ++++. ++..|.+|+|=
T Consensus 1 laiD~G~kriGvA~~d~---------~~~~-a~pl~-~--i~~~~~~~~~~~l~~----~i~~~-----~~~~iVvGlP~ 58 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI---------TGWT-AQGIP-T--IKAQDGEPDWSRIEE----LLKEW-----TPDKIVVGLPL 58 (130)
T ss_pred CeEccCCCeEEEEEECC---------CCCE-EeceE-E--EEecCCcHHHHHHHH----HHHHc-----CCCEEEEeccC
Confidence 68999999999999887 4433 21110 0 000122334445544 44433 46788899887
Q ss_pred CCCccH------HHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 026689 105 VNHPTD------QQRILNWLRDIFPGNVRLYVHNDALAALA 139 (235)
Q Consensus 105 ~~~~~~------~~~l~~~l~~~~~~~~~v~v~NDa~~a~~ 139 (235)
..+.+. ...+.+.|++.++ .||.+.+--.....
T Consensus 59 ~~dG~~~~~a~~v~~f~~~L~~~~~--~~v~~~DEr~TT~~ 97 (130)
T TIGR00250 59 NMDGTEGPLTERAQKFANRLEGRFG--VPVVLWDERLSTVE 97 (130)
T ss_pred CCCcCcCHHHHHHHHHHHHHHHHhC--CCEEEEcCCcCHHH
Confidence 644332 2467788877786 78988887765544
No 92
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=93.53 E-value=0.092 Score=40.26 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=40.5
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCc---cCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEE
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN---SVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igi 100 (235)
+++||+|+++|+++++..... ..-+++.....++.... -.+.+++.+.|...++++.+.++ .++..+.+
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~-----~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a~~~AE~~~k---~~i~~v~v 72 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSD-----GYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIAIEEAERLAK---CEIGSVYV 72 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEE-----EEEEEES----------HHHHH--HHHHHHHT--HHHHHHH-H---HHH--S--
T ss_pred CEEEEcCCCcEEEEEEEeCCC-----CcEEEEEEecccccccCCCEEEEHHHHHHHHHHHHHHHHHHhC---CeeeEEEe
Confidence 579999999999999986100 01112222222211110 12334444555555555544322 24555555
Q ss_pred eccCCCCccHHHHHHHHHHhhCCCCceEEEeC
Q 026689 101 AVSGVNHPTDQQRILNWLRDIFPGNVRLYVHN 132 (235)
Q Consensus 101 gi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~N 132 (235)
++++ ..-..+.+.+++.++ .|+.+.+
T Consensus 73 ~~g~----s~l~~i~~~~~~~~~--~~v~v~~ 98 (120)
T PF14450_consen 73 SIGG----SKLQNIEELIEKCGG--MPVRVAG 98 (120)
T ss_dssp TTGG----GGSTTHHHHHHHHHT--S-EEE--
T ss_pred cCch----hHHHhHHHHHHHhCC--CcEEEcc
Confidence 5511 122356777777776 6788877
No 93
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=93.49 E-value=3.9 Score=36.71 Aligned_cols=99 Identities=16% Similarity=0.140 Sum_probs=62.2
Q ss_pred EEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCC-CCccCCHH----HHHHHHHHHHHHHHHHcCCCcccceeeE
Q 026689 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-NHNSVGED----AARETIEKVMADALLKSGSNRSAVRAVC 99 (235)
Q Consensus 25 LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~-~~~~~~~~----~~~~~i~~~i~~~l~~~~~~~~~i~~ig 99 (235)
||||--...|-++|++. +++++...+.... .+...-|+ .=.+.|-.+++++++++++++.+|.+|+
T Consensus 1 Lgiets~~~~s~al~~~---------~~~i~~~~~~~~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~Ia 71 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDE---------DGEILANVSDTYVPEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVA 71 (322)
T ss_pred CEEeccccceEEEEEEC---------CCeEEEEEEeecccCcCCcChhHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 57888777788899986 6677775543211 11112232 2355688889999999999999999987
Q ss_pred Eec-cCCCCc-cHHHHHHHHHHhhCCCCceEEEeCcH
Q 026689 100 LAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDA 134 (235)
Q Consensus 100 igi-~G~~~~-~~~~~l~~~l~~~~~~~~~v~v~NDa 134 (235)
++. ||.... .-...+.+.|...++ .|+.-.|=-
T Consensus 72 vt~gPg~~~~l~vg~~~ak~la~~~~--~p~~~v~h~ 106 (322)
T TIGR03722 72 FSQGPGLGPCLRVGATAARALALKLN--KPLVGVNHC 106 (322)
T ss_pred EecCCchHHhHHHHHHHHHHHHHHhC--CCeechhhH
Confidence 654 343221 123445667766676 676655543
No 94
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=93.31 E-value=2 Score=38.92 Aligned_cols=93 Identities=20% Similarity=0.271 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHc-CCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCEEEEE
Q 026689 74 RETIEKVMADALLKS-GSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152 (235)
Q Consensus 74 ~~~i~~~i~~~l~~~-~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~g~~~gi~li 152 (235)
|+.+...++.++.+. ..++.+ ..+.+..|...+......+.+.|-+.++. ..+.+.++..+++++. +..+++||-
T Consensus 74 ~~~~e~~~~~~~~~~l~~~~~~-~~vvl~~p~~~~~~~r~~~~e~lfe~~~~-~~v~~~~~~~~a~~~~--g~~~~lVVD 149 (371)
T cd00012 74 WDDMEKIWDHLFFNELKVNPEE-HPVLLTEPPLNPKSNREKTTEIMFETFNV-PALYVAIQAVLSLYAS--GRTTGLVVD 149 (371)
T ss_pred HHHHHHHHHHHHHHhcCCCCCC-CceEEecCCCCCHHHHHHHHHHhhccCCC-CEEEEechHHHHHHhc--CCCeEEEEE
Confidence 555566666666442 333322 34567777776655666777777666764 5799999999998853 557899999
Q ss_pred eCCCceeEEEecCCcEEE
Q 026689 153 AGTGTIAYGFTEDGRDAR 170 (235)
Q Consensus 153 ~GTGs~~~g~~~~G~~~~ 170 (235)
+|.+..-...+.+|....
T Consensus 150 iG~~~t~i~pv~~G~~~~ 167 (371)
T cd00012 150 SGDGVTHVVPVYDGYVLP 167 (371)
T ss_pred CCCCeeEEEEEECCEEch
Confidence 999975555567886643
No 95
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=93.17 E-value=1.2 Score=35.69 Aligned_cols=99 Identities=13% Similarity=0.205 Sum_probs=46.0
Q ss_pred EEEEEEcCcc----ceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceee
Q 026689 23 VILGLDGGTT----STVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (235)
Q Consensus 23 ~~LgiD~GgT----~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~i 98 (235)
-+|++--|.. .+.++++|. +|+++...+...........++..+.+. +++.+. ++..|
T Consensus 6 rVla~~~g~g~~~~~~~~v~ld~---------~G~v~d~~~~~~~~~~~~~~~~~~~~l~----~~i~~~-----kP~vI 67 (150)
T PF14639_consen 6 RVLALSWGSGDGDDAVFCVVLDE---------NGEVLDHLKLVYNERDRERKEEDMERLK----KFIEKH-----KPDVI 67 (150)
T ss_dssp -EEEEE-TT--TTS-EEEEEE-T---------TS-EEEEEEE-S-TT-SS-SHHHHHHHH----HHHHHH-------SEE
T ss_pred EEEEEEcCCCCCCCCEEEEEECC---------CCcEEEEEEEcCCccchHHHHHHHHHHH----HHHHHc-----CCeEE
Confidence 4778877743 588999999 9999998876211111122233344444 445443 33455
Q ss_pred EEeccCCCCccHHHHHHHHHHhhC-----CCCceEEEeCcHHHHHHh
Q 026689 99 CLAVSGVNHPTDQQRILNWLRDIF-----PGNVRLYVHNDALAALAS 140 (235)
Q Consensus 99 gigi~G~~~~~~~~~l~~~l~~~~-----~~~~~v~v~NDa~~a~~~ 140 (235)
+||-.+.....-...+++.+++.- + ..+|.+.||.-+-++.
T Consensus 68 ~v~g~~~~s~~l~~~v~~~v~~~~~~~~~~-~i~V~~v~~~~A~lY~ 113 (150)
T PF14639_consen 68 AVGGNSRESRKLYDDVRDIVEELDEDEQMP-PIPVVIVDDEVARLYS 113 (150)
T ss_dssp EE--SSTHHHHHHHHHHHHHHHTTB-TTS--B--EEE---TTHHHHH
T ss_pred EEcCCChhHHHHHHHHHHHHHHhhhcccCC-CceEEEECcHHHHHHh
Confidence 453222222222345666665542 2 2789999999888774
No 96
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=92.83 E-value=0.51 Score=41.42 Aligned_cols=86 Identities=16% Similarity=0.182 Sum_probs=49.9
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEe
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igig 101 (235)
..+||+|+||.+|+++..|- +-..+.....|- |. .- +++.+.+++...+. ....+++-
T Consensus 3 ~kilGiDIGGAntk~a~~DG---------~~~~~d~~YlPM--Wk--~k----~rL~~~Lkei~~k~-----~~~~vgvv 60 (330)
T COG1548 3 MKILGIDIGGANTKIASSDG---------DNYKIDHIYLPM--WK--KK----DRLEETLKEIVHKD-----NVDYVGVV 60 (330)
T ss_pred ceEEEeeccCccchhhhccC---------CeeeeeEEEecc--cc--ch----hHHHHHHHHHhccC-----CcceeEEE
Confidence 36899999999999998443 222223333321 21 11 35666666665442 34566677
Q ss_pred ccCCC-C--c---cHHHHHHHHHHhhCCCCceEEEe
Q 026689 102 VSGVN-H--P---TDQQRILNWLRDIFPGNVRLYVH 131 (235)
Q Consensus 102 i~G~~-~--~---~~~~~l~~~l~~~~~~~~~v~v~ 131 (235)
++|-- + + +.-..+.+..++.|. +||++.
T Consensus 61 MTaELaD~f~tk~eGVe~Ii~~v~~Af~--~pv~~v 94 (330)
T COG1548 61 MTAELADAFKTKAEGVEDIIDTVEKAFN--CPVYVV 94 (330)
T ss_pred eeHHHHHHhhhHHhHHHHHHHHHHHhcC--CceEEE
Confidence 77752 1 1 123456777888887 676543
No 97
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=92.20 E-value=8.2 Score=34.71 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=47.9
Q ss_pred eeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc---CCCCCEEEEEeCCCceeEEEecCCcEE
Q 026689 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT---MGKLHGCVLIAGTGTIAYGFTEDGRDA 169 (235)
Q Consensus 97 ~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~---~g~~~gi~li~GTGs~~~g~~~~G~~~ 169 (235)
.+.+++|...+...+..+.+.++. ++. ..+.+.|+..+|+++.. .....++++-+|.|+.-..++..+...
T Consensus 100 ~vvitvP~~~~~~~R~~l~~a~~~-ag~-~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~ 173 (335)
T PRK13929 100 NVVVCTPSGSTAVERRAISDAVKN-CGA-KNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVV 173 (335)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH-cCC-CeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEE
Confidence 456888887766666677776654 453 56899999999888642 123457888899998655565344444
No 98
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=92.10 E-value=7.8 Score=35.40 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=70.9
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCc------cCCHHHHHHHHHHHHHHHHHHcCCCcccce
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN------SVGEDAARETIEKVMADALLKSGSNRSAVR 96 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~------~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 96 (235)
.+||||--...|-++|+|. +++++...+....... +.-...=.++|..+++++++++++.+++|.
T Consensus 2 ~iLgIETScd~tsvAl~~~---------~~~il~~~~~sq~~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did 72 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTS---------DGEILSNVRETYITPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDIS 72 (345)
T ss_pred eEEEEEccchhhEEEEEEC---------CCcEEEEEEeeccccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 5899999999999999997 6778876543111000 111233367888999999999999999999
Q ss_pred eeEEeccCCCCcc---HHHHHHHHHHhhCCCCceEEEeCcHHH
Q 026689 97 AVCLAVSGVNHPT---DQQRILNWLRDIFPGNVRLYVHNDALA 136 (235)
Q Consensus 97 ~igigi~G~~~~~---~~~~l~~~l~~~~~~~~~v~v~NDa~~ 136 (235)
+|+++ .||.... -+....+-|...++ .|++=.|=...
T Consensus 73 ~Iavt-~GPGl~~~LrVG~~~Ak~LA~a~~--~PligV~Hleg 112 (345)
T PTZ00340 73 LICYT-KGPGMGAPLSVGAVVARTLSLLWG--KPLVGVNHCVA 112 (345)
T ss_pred EEEEe-cCCCcHhhHHHHHHHHHHHHHHcC--CCEeecchHHH
Confidence 88663 4554322 24566777777776 78887776654
No 99
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=92.02 E-value=9.9 Score=37.73 Aligned_cols=90 Identities=16% Similarity=0.019 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHHHHH-HcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---C
Q 026689 69 GEDAARETIEKVMADALL-KSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---G 144 (235)
Q Consensus 69 ~~~~~~~~i~~~i~~~l~-~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~---g 144 (235)
.|+++...+...+++..+ ..+ .++..+.|.+|...+...+..+++..+ ..+. ..+.+.|+..+|+++-.. .
T Consensus 136 speeisa~iL~~Lk~~Ae~~lg---~~v~~aVITVPayF~~~qR~at~~Aa~-~AGl-~v~rlInEPtAAAlayg~~~~~ 210 (657)
T PTZ00186 136 SPSQIGAFVLEKMKETAENFLG---HKVSNAVVTCPAYFNDAQRQATKDAGT-IAGL-NVIRVVNEPTAAALAYGMDKTK 210 (657)
T ss_pred cHHHHHHHHHHHHHHHHHHHhC---CccceEEEEECCCCChHHHHHHHHHHH-HcCC-CeEEEEcChHHHHHHHhccCCC
Confidence 355555544444433322 222 246667788888876655444554443 2343 357899999988775321 1
Q ss_pred CCCEEEEEeCCCceeEEEe
Q 026689 145 KLHGCVLIAGTGTIAYGFT 163 (235)
Q Consensus 145 ~~~gi~li~GTGs~~~g~~ 163 (235)
....+|+=+|-|..-..+.
T Consensus 211 ~~~vlV~DlGGGT~DvSil 229 (657)
T PTZ00186 211 DSLIAVYDLGGGTFDISVL 229 (657)
T ss_pred CCEEEEEECCCCeEEEEEE
Confidence 2356677788887544443
No 100
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=91.98 E-value=0.71 Score=41.46 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=42.4
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCC-CCc----cCCHHHHHHHHHHHHHHHHHHcCCCccccee
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-NHN----SVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~-~~~----~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 97 (235)
.++|||+|.+++|++.+...++ +.++......+.+ +.. -.+++ .+.+++++++++.+.. ...
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~~~------~~~v~~~~~~~~p~~~i~~g~i~d~~----~~~~~l~~~~~~~~~~---~k~ 70 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRSGD------RYKLEHYAVEPLPAGIFTEGHIVEYQ----AVAEALKELLSELGIN---TKK 70 (348)
T ss_pred cEEEEEeccCeEEEEEEEecCC------ceEEEEEEEEECCCCcccCCCccCHH----HHHHHHHHHHHHcCCC---cce
Confidence 6899999999999999885211 3344444443321 111 12444 4556666666666653 345
Q ss_pred eEEeccCCC
Q 026689 98 VCLAVSGVN 106 (235)
Q Consensus 98 igigi~G~~ 106 (235)
+.+++|+..
T Consensus 71 v~~alp~~~ 79 (348)
T TIGR01175 71 AATAVPGSA 79 (348)
T ss_pred EEEEecCCe
Confidence 667888853
No 101
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=91.37 E-value=10 Score=33.96 Aligned_cols=101 Identities=18% Similarity=0.149 Sum_probs=68.1
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCC----CC----ccCCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS----NH----NSVGEDAARETIEKVMADALLKSGSNRSAV 95 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~----~~----~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i 95 (235)
+|+||--+..+-++|++. +.+++........ ++ .+.....-.+.|..++++++++++++.++|
T Consensus 1 iLaIdTs~~~~sval~~~---------~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~i 71 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDD---------GKGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAEAGLTLSDI 71 (314)
T ss_pred CEEEECcccceEEEEEEC---------CceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence 589999999999999986 4457766543210 00 012234457788899999999999999999
Q ss_pred eeeEEeccCCCCccH---HHHHHHHHHhhCCCCceEEEeCcHHH
Q 026689 96 RAVCLAVSGVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALA 136 (235)
Q Consensus 96 ~~igigi~G~~~~~~---~~~l~~~l~~~~~~~~~v~v~NDa~~ 136 (235)
.+|+++ .||.+-+. .....+-|...++ .|+.-.|=-.+
T Consensus 72 d~iav~-~GPGsftglrig~~~Ak~la~~~~--~p~~~v~h~~a 112 (314)
T TIGR03723 72 DAIAVT-AGPGLIGALLVGVSFAKALALALN--KPLIGVNHLEG 112 (314)
T ss_pred CEEEEe-cCCChHHhHHHHHHHHHHHHHHhC--CCEEecccHHH
Confidence 998664 45654332 3456666766665 78877776554
No 102
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.08 E-value=1.9 Score=41.26 Aligned_cols=130 Identities=15% Similarity=0.130 Sum_probs=76.7
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC-----CCCCc-cCCHHHHHHHHHHHHHHHHHHcC-CCccc
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG-----CSNHN-SVGEDAARETIEKVMADALLKSG-SNRSA 94 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~-----~~~~~-~~~~~~~~~~i~~~i~~~l~~~~-~~~~~ 94 (235)
+.+.+||+|+-++|..|++...+ .-+++.+.+.. ..+.. ..+ ++.+++..++++.+.+.+. ..+++
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~~~------~~~~l~~~k~~vrLgegl~~~g~L~-~eai~R~~~aL~~f~e~~~~~~~~~ 75 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEITPG------SFQVLFREKRIVRLGEGLDATGNLS-EEAIERALSALKRFAELLDGFGAEE 75 (492)
T ss_pred ceEEEEEecCCeEEEEEEeccCC------ccchhhhhhhheehhcCccccCCcC-HHHHHHHHHHHHHHHHHHhhCCCCE
Confidence 36899999999999999996211 33444433221 01110 122 4556666666666543322 23334
Q ss_pred ceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCc---HHHHHHhhc--CC-CCCEEEEEeCCCceeEEE
Q 026689 95 VRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHND---ALAALASGT--MG-KLHGCVLIAGTGTIAYGF 162 (235)
Q Consensus 95 i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~ND---a~~a~~~~~--~g-~~~gi~li~GTGs~~~g~ 162 (235)
+.. |+.+..=...+...+.+..++.++ .++.|..= ++...+|.. .+ ..+++++=+|-||-=..+
T Consensus 76 v~~--vATsA~R~A~N~~eFl~rv~~~~G--~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~ 145 (492)
T COG0248 76 VRV--VATSALRDAPNGDEFLARVEKELG--LPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVL 145 (492)
T ss_pred EEE--ehhHHHHcCCCHHHHHHHHHHHhC--CceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEE
Confidence 544 566666455556677788888888 67777443 334444432 23 568999999999954433
No 103
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=91.01 E-value=5.2 Score=33.42 Aligned_cols=139 Identities=20% Similarity=0.165 Sum_probs=69.4
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEE-EEEe--CCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEE
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLA-RAAA--GCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~-~~~~--~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igi 100 (235)
+|.||+|=|.+|+++++. + +++. ..+. .+. . ....++ +...+.+++.+... ..+.+
T Consensus 1 ~L~iDiGNT~ik~~~~~~---------~-~~~~~~~~~~~~~~-~-~~~~~~----~~~~~~~~~~~~~~-----~~v~i 59 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDG---------D-KLIDPSGRISHSTA-L-DSSSDE----LLELLESLLPQPKI-----DAVII 59 (206)
T ss_dssp EEEEEE-SSEEEEEEEET---------T-EEEE-EEEE-EEEC-T-TSSHHH----HHHHHHHHHHCTTC-----GEEEE
T ss_pred CEEEEECCCeEEEEEEEC---------C-EEEeeeeEEEeccc-c-cccHHH----HHHHHHHHhccccC-----CcEEE
Confidence 589999999999999986 3 3333 2222 111 1 123344 34445555554322 23333
Q ss_pred eccCCCCccHHHHHHHHHHhhCCCCceEE-------------------EeCcHHHHHHhhcC-CCCCEEEEEeCCCceeE
Q 026689 101 AVSGVNHPTDQQRILNWLRDIFPGNVRLY-------------------VHNDALAALASGTM-GKLHGCVLIAGTGTIAY 160 (235)
Q Consensus 101 gi~G~~~~~~~~~l~~~l~~~~~~~~~v~-------------------v~NDa~~a~~~~~~-g~~~gi~li~GTGs~~~ 160 (235)
+....+ ....+.+.+.+.++ .|.+ +--|-.++++++.. -.++.+++-+||-+-.-
T Consensus 60 --sSV~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~y~~p~~LG~DR~~~~~aa~~~~~~~~lViD~GTA~Tid 134 (206)
T PF03309_consen 60 --SSVVPE-ATEQLLEALLKRFG--RPHFVKSSASKLGLKNAYDNPSQLGVDRWAAAIAARKLYGQPCLVIDAGTATTID 134 (206)
T ss_dssp --EESSGH-HHHHHHHHHHHHCS----EEES-TTSCCSSEESSSSGGGS-HHHHHHHHHHHHHHTSSEEEEEESSEEEEE
T ss_pred --EEcCCH-HHHHHHHHHHHHhC--CCEEEEccccccCccccCCChhHhhHHHHHHHHHHHHhcCCCEEEEEcCCeEEEE
Confidence 333322 22334444444332 1122 22244455655432 24689999999987544
Q ss_pred EEecCCcEEEeCCCCccccccchHHHHHHHHHHHHH
Q 026689 161 GFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVI 196 (235)
Q Consensus 161 g~~~~G~~~~~Gg~G~llgd~gSg~~ig~~al~~~~ 196 (235)
.++.+|++.. |--.-|..+.+++|....
T Consensus 135 ~v~~~g~~~G--------G~I~PG~~~~~~aL~~~T 162 (206)
T PF03309_consen 135 VVDADGQHLG--------GAILPGLQLMLKALHSNT 162 (206)
T ss_dssp EEETTSEEEE--------EEEEE-HHHHHHHHHHHS
T ss_pred EEcCCCeEEE--------EEECcCHHHHHHHHHHhh
Confidence 4444554322 223446777777776643
No 104
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=90.66 E-value=8.9 Score=31.94 Aligned_cols=96 Identities=17% Similarity=0.112 Sum_probs=66.3
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEecc
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~ 103 (235)
+|+||--+..+-+++++. ++++...... ....--+.|...+++++++++++.++|..|++ ..
T Consensus 1 iLaidTs~~~~sval~~~----------~~~~~~~~~~-------~~~~h~~~l~~~i~~~l~~~~~~~~~i~~iav-~~ 62 (202)
T TIGR03725 1 ILAIDTSTEALSVALLDD----------GEILAERSEE-------AGRNHSEILLPMIEELLAEAGLSLQDLDAIAV-GV 62 (202)
T ss_pred CEEEECCCcceEEEEEEC----------CEEEEEEeeh-------hhHHHHHHHHHHHHHHHHHcCCCHHHCCEEEE-ec
Confidence 488999999999998874 5677655432 12334457888888999999999999988865 35
Q ss_pred CCCCccH---HHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 026689 104 GVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALA 139 (235)
Q Consensus 104 G~~~~~~---~~~l~~~l~~~~~~~~~v~v~NDa~~a~~ 139 (235)
||.+-+. ...+.+-|...++ .|++-.+--++.+.
T Consensus 63 GPGSfTGlRig~~~akgla~~~~--~p~~~vssL~~lA~ 99 (202)
T TIGR03725 63 GPGSFTGLRIGLATAKGLALALG--IPLVGVSSLEALAA 99 (202)
T ss_pred CCChHHhHHHHHHHHHHHHHHhC--CCEEecCHHHHHHh
Confidence 7765443 3445566655565 78877776665543
No 105
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=90.12 E-value=1.6 Score=40.71 Aligned_cols=64 Identities=14% Similarity=0.048 Sum_probs=41.7
Q ss_pred CcEEEEEEcCccceEEEEEeCccCCCCCCCCCCEE------EEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcC
Q 026689 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVL------ARAAAGCSNHNSVGEDAARETIEKVMADALLKSG 89 (235)
Q Consensus 21 ~~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il------~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~ 89 (235)
+.|.+-||.|.|.+|+.|+-.... + ++... -....|.......+|++.-+.|..+++.+.+..+
T Consensus 66 ~~Y~iiiDAGSTGsRvHvY~F~~~---~--~~~~p~le~E~F~~~kPGLSsfaddp~~aA~Sl~~LLd~A~~~vP 135 (453)
T KOG1385|consen 66 RQYAIIIDAGSTGTRVHVYKFDQC---L--PGMPPELEHELFKEVKPGLSSFADDPEEAANSLRPLLDVAEAFVP 135 (453)
T ss_pred eEEEEEEecCCCcceEEEEEeccC---C--CCCCchhHHHHHhhcCCcccccCCChHHHHHhHHHHHHHHHhhCC
Confidence 469999999999999999876100 0 01111 1112233223357899999999999988876643
No 106
>PRK14878 UGMP family protein; Provisional
Probab=89.62 E-value=15 Score=33.02 Aligned_cols=98 Identities=16% Similarity=0.139 Sum_probs=60.5
Q ss_pred EEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCC-CCccCCH----HHHHHHHHHHHHHHHHHcCCCcccceeeE
Q 026689 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-NHNSVGE----DAARETIEKVMADALLKSGSNRSAVRAVC 99 (235)
Q Consensus 25 LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~-~~~~~~~----~~~~~~i~~~i~~~l~~~~~~~~~i~~ig 99 (235)
||||--...+-++|++. +++++..+.... .+...-| ..-.+.|..+++++++++++++++|.+|.
T Consensus 1 l~iets~~~~s~al~~~----------~~i~~~~~~~~~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~a~~~~~did~Ia 70 (323)
T PRK14878 1 LGIESTAHTLGVGIVKE----------DKVLANVRDTYVPEKGGIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVA 70 (323)
T ss_pred CEEecCCcccEEEEEEC----------CEEEEEEEEecccCcCCcCccHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 57887777788888874 347765543211 1101122 22346688999999999999999999987
Q ss_pred Eec-cCCCCcc-HHHHHHHHHHhhCCCCceEEEeCcH
Q 026689 100 LAV-SGVNHPT-DQQRILNWLRDIFPGNVRLYVHNDA 134 (235)
Q Consensus 100 igi-~G~~~~~-~~~~l~~~l~~~~~~~~~v~v~NDa 134 (235)
++. ||....- -.....+-|...++ .|+.-.|=-
T Consensus 71 vt~gPG~~~~lrvg~~~Ak~la~~~~--~p~~~v~h~ 105 (323)
T PRK14878 71 VSQGPGLGPALRVGATAARALALKYN--KPLVPVNHC 105 (323)
T ss_pred EecCCCcccchHHHHHHHHHHHHHhC--CCccccchH
Confidence 754 4443221 23445666766676 676555543
No 107
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=89.61 E-value=15 Score=32.92 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=47.5
Q ss_pred eeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---CCCCEEEEEeCCCceeEEEecCCcEEEe
Q 026689 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTIAYGFTEDGRDARA 171 (235)
Q Consensus 97 ~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~---g~~~gi~li~GTGs~~~g~~~~G~~~~~ 171 (235)
.+.+++|...+......+...++. ++. ..+.+.|+..+|+++... .....+++=+|.|..-..++..|.+...
T Consensus 97 ~~vitvP~~~~~~~r~~~~~a~~~-ag~-~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~ 172 (336)
T PRK13928 97 RIMICIPTGITSVEKRAVREAAEQ-AGA-KKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTS 172 (336)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHH-cCC-CceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEe
Confidence 356777777665555666666654 453 468999999998886322 1234677888988766666666655443
No 108
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=88.93 E-value=17 Score=32.54 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=43.3
Q ss_pred eeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---CCCCEEEEEeCCCceeEEEe
Q 026689 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTIAYGFT 163 (235)
Q Consensus 97 ~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~---g~~~gi~li~GTGs~~~g~~ 163 (235)
.+.+++|...+......+.+.++. ++. ..+.+.|+..+|+++... ....++++-+|.|..-..++
T Consensus 100 ~~vitvP~~~~~~~r~~~~~~~~~-ag~-~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v 167 (333)
T TIGR00904 100 RIVICVPSGITPVERRAVKESALS-AGA-REVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVI 167 (333)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHH-cCC-CeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEE
Confidence 456788877666555556665544 443 568999999999885322 12357888999987555554
No 109
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.85 E-value=2 Score=38.99 Aligned_cols=71 Identities=21% Similarity=0.204 Sum_probs=41.7
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC-CCCCc----cCCHHHHHHHHHHHHHHHHHHcCCCccccee
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG-CSNHN----SVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~-~~~~~----~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 97 (235)
..+|||+|.+++|++.....++ .-++-.....+ +.|.. -++++ .+.+.+++++.+++++.++
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~------~~kLe~y~~~~lp~~iv~dg~ivd~~----av~~~Lk~ala~~gi~~k~--- 77 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGN------RYKLEKYASEPLPENIVADGKIVDYD----AVASALKRALAKLGIKSKN--- 77 (354)
T ss_pred ceeeEeeccceEEEEEEcccCC------ceeeeeeeecccCccccccCCcccHH----HHHHHHHHHHHhcCcchhh---
Confidence 5899999999999998875211 12222222222 11221 13454 4666677788888875443
Q ss_pred eEEeccCCC
Q 026689 98 VCLAVSGVN 106 (235)
Q Consensus 98 igigi~G~~ 106 (235)
+..++||-.
T Consensus 78 aa~AVP~s~ 86 (354)
T COG4972 78 AATAVPGSA 86 (354)
T ss_pred hhhhcCccc
Confidence 335778864
No 110
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=88.45 E-value=21 Score=34.88 Aligned_cols=91 Identities=16% Similarity=0.058 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc--CC-
Q 026689 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MG- 144 (235)
Q Consensus 68 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~--~g- 144 (235)
..|+++...+..-+++-.+.. -...+..+++++|...+...+....+.-+ ..+. ..+++.|+..+|+++-. ..
T Consensus 95 ~~~eeisa~~L~~lk~~ae~~--lg~~v~~~VItVPayF~d~qR~at~~A~~-iaGl-~vlrlinEPtAAAlayg~~~~~ 170 (579)
T COG0443 95 YTPEEISAMILTKLKEDAEAY--LGEKVTDAVITVPAYFNDAQRQATKDAAR-IAGL-NVLRLINEPTAAALAYGLDKGK 170 (579)
T ss_pred eCHHHHHHHHHHHHHHHHHHh--hCCCcceEEEEeCCCCCHHHHHHHHHHHH-HcCC-CeEEEecchHHHHHHhHhccCC
Confidence 356666555544444433221 12357788899999987666544444433 3453 57899999999987532 22
Q ss_pred CCCEEEEEeCCCceeEEE
Q 026689 145 KLHGCVLIAGTGTIAYGF 162 (235)
Q Consensus 145 ~~~gi~li~GTGs~~~g~ 162 (235)
....+|+=+|-|..=..+
T Consensus 171 ~~~vlV~DlGGGTfDvSl 188 (579)
T COG0443 171 EKTVLVYDLGGGTFDVSL 188 (579)
T ss_pred CcEEEEEEcCCCCEEEEE
Confidence 223445566776543333
No 111
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=88.37 E-value=14 Score=33.45 Aligned_cols=95 Identities=16% Similarity=0.176 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc---CCC
Q 026689 69 GEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT---MGK 145 (235)
Q Consensus 69 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~---~g~ 145 (235)
|.+....-|...++++...... .+. .+.+++|.-.+.-++..+.+.+.+ .+. .+|++...-.+|++|.. ...
T Consensus 70 D~~~~~~~l~~~l~k~~~~~~~--~~p-~vvi~vP~~~T~verrA~~~a~~~-aGa-~~V~li~ep~AaAiGaGl~i~~~ 144 (326)
T PF06723_consen 70 DYEAAEEMLRYFLKKALGRRSF--FRP-RVVICVPSGITEVERRALIDAARQ-AGA-RKVYLIEEPIAAAIGAGLDIFEP 144 (326)
T ss_dssp SHHHHHHHHHHHHHHHHTSS-S--S---EEEEEE-SS--HHHHHHHHHHHHH-TT--SEEEEEEHHHHHHHHTT--TTSS
T ss_pred CHHHHHHHHHHHHHHhccCCCC--CCC-eEEEEeCCCCCHHHHHHHHHHHHH-cCC-CEEEEecchHHHHhcCCCCCCCC
Confidence 5555444444444444432111 122 356888998887777788888765 443 78999999999988753 222
Q ss_pred CCEEEEEeCCCceeEEEecCCcE
Q 026689 146 LHGCVLIAGTGTIAYGFTEDGRD 168 (235)
Q Consensus 146 ~~gi~li~GTGs~~~g~~~~G~~ 168 (235)
...+++-+|.|.-=.+++--|.+
T Consensus 145 ~g~miVDIG~GtTdiavislggi 167 (326)
T PF06723_consen 145 RGSMIVDIGGGTTDIAVISLGGI 167 (326)
T ss_dssp S-EEEEEE-SS-EEEEEEETTEE
T ss_pred CceEEEEECCCeEEEEEEECCCE
Confidence 34577888888654555544543
No 112
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=87.97 E-value=7.8 Score=36.84 Aligned_cols=98 Identities=12% Similarity=0.275 Sum_probs=56.1
Q ss_pred EEEEEEcCccceEEEEEeC--ccCCCCCC-CCC-----CEEEEEEeCCC---CCccCCHHHHHHHHHHHHHHHHHHcCCC
Q 026689 23 VILGLDGGTTSTVCICMPV--ISMSDSLP-DPL-----PVLARAAAGCS---NHNSVGEDAARETIEKVMADALLKSGSN 91 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~--~~~~~~~~-~~g-----~il~~~~~~~~---~~~~~~~~~~~~~i~~~i~~~l~~~~~~ 91 (235)
.-+|||+|+|.|.+++... .+.+..+. +.= +++.+...-.+ +..+.|.+ .+.+.+++-.+++++.
T Consensus 4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~dkeViYrS~I~fTPl~~~~~ID~~----al~~iv~~eY~~Agi~ 79 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVDKEVIYRSPIYFTPLLSQTEIDAE----ALKEIVEEEYRKAGIT 79 (473)
T ss_pred EEEEEeecCCceeEEEEEeEEEeccCCCccceEEEeccEEEecCCccccCCCCCCccCHH----HHHHHHHHHHHHcCCC
Confidence 3589999999999887663 11100000 011 11111111011 11234444 4666777778889999
Q ss_pred cccceeeEEeccCCCC-ccHHHHHHHHHHhhCCC
Q 026689 92 RSAVRAVCLAVSGVNH-PTDQQRILNWLRDIFPG 124 (235)
Q Consensus 92 ~~~i~~igigi~G~~~-~~~~~~l~~~l~~~~~~ 124 (235)
|++|..=.+=++|=.. .++...+.+.|+...+.
T Consensus 80 p~~I~TGAVIITGETArKeNA~~v~~~Ls~~aGD 113 (473)
T PF06277_consen 80 PEDIDTGAVIITGETARKENAREVLHALSGFAGD 113 (473)
T ss_pred HHHCccccEEEecchhhhhhHHHHHHHHHHhcCC
Confidence 9999754455677653 34456788888888763
No 113
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=87.24 E-value=19 Score=32.64 Aligned_cols=93 Identities=18% Similarity=0.198 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHH-cCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCEEEEE
Q 026689 74 RETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152 (235)
Q Consensus 74 ~~~i~~~i~~~l~~-~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~g~~~gi~li 152 (235)
|+.+...++.++.+ ....+.+ ..+.+..|-.........+.+.|=+.|+. ..+.+.++..+++++. +..+++||=
T Consensus 73 ~~~~e~i~~~~~~~~l~~~~~~-~~vll~~~~~~~~~~r~~l~e~lfE~~~~-~~v~~~~~~~~a~~~~--g~~tglVVD 148 (393)
T PF00022_consen 73 WDALEEIWDYIFSNLLKVDPSD-HPVLLTEPPFNPRSQREKLAEILFEKFGV-PSVYFIPSPLLALYAS--GRTTGLVVD 148 (393)
T ss_dssp HHHHHHHHHHHHHTTT-SSGGG-SEEEEEESTT--HHHHHHHHHHHHHTS---SEEEEEEHHHHHHHHT--TBSSEEEEE
T ss_pred cccccccccccccccccccccc-ceeeeeccccCCchhhhhhhhhhhccccc-ceeeeeeccccccccc--ccccccccc
Confidence 55677777777665 3444433 34556666665555566777777777874 5699999999998853 556899999
Q ss_pred eCCCceeEEEecCCcEEE
Q 026689 153 AGTGTIAYGFTEDGRDAR 170 (235)
Q Consensus 153 ~GTGs~~~g~~~~G~~~~ 170 (235)
+|....-..-+.||....
T Consensus 149 ~G~~~t~v~pV~dG~~~~ 166 (393)
T PF00022_consen 149 IGYSSTSVVPVVDGYVLP 166 (393)
T ss_dssp ESSS-EEEEEEETTEE-G
T ss_pred cceeeeeeeeeeeccccc
Confidence 999864333457886643
No 114
>PRK13410 molecular chaperone DnaK; Provisional
Probab=86.37 E-value=36 Score=33.87 Aligned_cols=89 Identities=17% Similarity=0.096 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHHHHHH-cCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---C
Q 026689 69 GEDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---G 144 (235)
Q Consensus 69 ~~~~~~~~i~~~i~~~l~~-~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~---g 144 (235)
.|+++...+..-+.+...+ .+ ..+..++|.+|..-+...+..+++..+. .+. ..+.+.|+..||+++-.. .
T Consensus 111 speel~a~iL~~lk~~ae~~lg---~~v~~~VITVPa~f~~~qR~a~~~Aa~~-AGl-~v~~li~EPtAAAlayg~~~~~ 185 (668)
T PRK13410 111 APEELSAMILRKLADDASRYLG---EPVTGAVITVPAYFNDSQRQATRDAGRI-AGL-EVERILNEPTAAALAYGLDRSS 185 (668)
T ss_pred cHHHHHHHHHHHHHHHHHHHhC---CCcceEEEEECCCCCHHHHHHHHHHHHH-cCC-CeEEEecchHHHHHHhccccCC
Confidence 4566655555544443322 22 2466778999998766555555555432 343 357899999998875321 2
Q ss_pred CCCEEEEEeCCCceeEEE
Q 026689 145 KLHGCVLIAGTGTIAYGF 162 (235)
Q Consensus 145 ~~~gi~li~GTGs~~~g~ 162 (235)
....+|+=+|.|..-..+
T Consensus 186 ~~~vlV~DlGgGT~Dvsv 203 (668)
T PRK13410 186 SQTVLVFDLGGGTFDVSL 203 (668)
T ss_pred CCEEEEEECCCCeEEEEE
Confidence 234667778887643333
No 115
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=85.80 E-value=5.8 Score=37.57 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=63.8
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC---------CC--------CCccCCHH-HHHHHHHHHHHH
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG---------CS--------NHNSVGED-AARETIEKVMAD 83 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~---------~~--------~~~~~~~~-~~~~~i~~~i~~ 83 (235)
..+||+|.++.++|++++|. +.+++...... +. +..-..|- -|++.+--+++.
T Consensus 9 ~~fLG~DlSTQqlKaviids---------~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDlll~k 79 (545)
T KOG2531|consen 9 RSFLGFDLSTQQLKAVIIDS---------NLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLLLDK 79 (545)
T ss_pred ceeeeeecccceeEEEEEcC---------CccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHHHHH
Confidence 36999999999999999999 99999877543 11 11112344 566665444444
Q ss_pred HHHHcCCCcccceeeEEeccCCCCcc---------------HHHHHHHHHHhhCCC-CceEEEeCcHHH
Q 026689 84 ALLKSGSNRSAVRAVCLAVSGVNHPT---------------DQQRILNWLRDIFPG-NVRLYVHNDALA 136 (235)
Q Consensus 84 ~l~~~~~~~~~i~~igigi~G~~~~~---------------~~~~l~~~l~~~~~~-~~~v~v~NDa~~ 136 (235)
+.+++.+-++|.+| +-+|..+.. ....|.+.|+..|.. ..|++.+.-...
T Consensus 80 -l~~~~~d~~kV~ai--SGagQQHGsVyWs~ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtk 145 (545)
T KOG2531|consen 80 -LREAGFDLSKVMAI--SGAGQQHGSVYWSKGAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTK 145 (545)
T ss_pred -HHHcCCCHHHhhhh--cccccccceeeehhhhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHH
Confidence 45566665566653 444444432 124688888887742 157777665543
No 116
>CHL00094 dnaK heat shock protein 70
Probab=85.69 E-value=34 Score=33.65 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHHHH-HHcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---C
Q 026689 69 GEDAARETIEKVMADAL-LKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---G 144 (235)
Q Consensus 69 ~~~~~~~~i~~~i~~~l-~~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~---g 144 (235)
.|+++...+...+.+.. ...+ .++..+.+.+|..-+...+..+.+..+ ..+. ..+.+.|+..+|+++-.. .
T Consensus 111 s~eei~a~iL~~l~~~ae~~lg---~~v~~~VItVPa~f~~~qR~a~~~Aa~-~AGl-~v~~li~EptAAAlay~~~~~~ 185 (621)
T CHL00094 111 SPEEISAQVLRKLVEDASKYLG---ETVTQAVITVPAYFNDSQRQATKDAGK-IAGL-EVLRIINEPTAASLAYGLDKKN 185 (621)
T ss_pred cHHHHHHHHHHHHHHHHHHHhC---CCCCeEEEEECCCCCHHHHHHHHHHHH-HcCC-ceEEEeccHHHHHHHhccccCC
Confidence 34555444444443332 2222 235667788898876554445555543 3443 457899999988875321 2
Q ss_pred CCCEEEEEeCCCceeEEEe
Q 026689 145 KLHGCVLIAGTGTIAYGFT 163 (235)
Q Consensus 145 ~~~gi~li~GTGs~~~g~~ 163 (235)
....+++=+|.|+.-..+.
T Consensus 186 ~~~vlV~DlGgGT~DvSv~ 204 (621)
T CHL00094 186 NETILVFDLGGGTFDVSIL 204 (621)
T ss_pred CCEEEEEEcCCCeEEEEEE
Confidence 2345677788887544443
No 117
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=85.58 E-value=27 Score=34.31 Aligned_cols=89 Identities=16% Similarity=0.060 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHHHHHH-cCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---C
Q 026689 69 GEDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---G 144 (235)
Q Consensus 69 ~~~~~~~~i~~~i~~~l~~-~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~---g 144 (235)
.|+++...+...+.+...+ .+ ..+..++|++|..-+...+..+.+..+. .+. ..+.+.|+..+|+++-.. .
T Consensus 109 ~peel~a~iL~~lk~~ae~~~g---~~v~~~VItVPa~f~~~qR~a~~~Aa~~-AGl-~v~~li~EptAAAl~y~~~~~~ 183 (627)
T PRK00290 109 TPQEISAMILQKLKKDAEDYLG---EKVTEAVITVPAYFNDAQRQATKDAGKI-AGL-EVLRIINEPTAAALAYGLDKKG 183 (627)
T ss_pred cHHHHHHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCHHHHHHHHHHHHH-cCC-ceEEEecchHHHHHHhhhccCC
Confidence 4555555444444443322 22 2466677889988766555555555433 343 357899999988775321 2
Q ss_pred CCCEEEEEeCCCceeEEE
Q 026689 145 KLHGCVLIAGTGTIAYGF 162 (235)
Q Consensus 145 ~~~gi~li~GTGs~~~g~ 162 (235)
....+++=+|-|..-..+
T Consensus 184 ~~~vlV~D~GggT~dvsv 201 (627)
T PRK00290 184 DEKILVYDLGGGTFDVSI 201 (627)
T ss_pred CCEEEEEECCCCeEEEEE
Confidence 245667777877644333
No 118
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=85.41 E-value=16 Score=34.89 Aligned_cols=142 Identities=15% Similarity=0.193 Sum_probs=71.0
Q ss_pred EEEEEEcCccceEEEEEeC--ccCCCCCC-CC-----CCEEEEEEeCCC---CCccCCHHHHHHHHHHHHHHHHHHcCCC
Q 026689 23 VILGLDGGTTSTVCICMPV--ISMSDSLP-DP-----LPVLARAAAGCS---NHNSVGEDAARETIEKVMADALLKSGSN 91 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~--~~~~~~~~-~~-----g~il~~~~~~~~---~~~~~~~~~~~~~i~~~i~~~l~~~~~~ 91 (235)
+-+|||+|+|.|.+++... .+....+. +. -+++.+...-.+ +....|. +.|.+.+++-.++++++
T Consensus 7 ~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~dkev~yrS~i~fTPl~~~~~ID~----~~i~~~V~~ey~~Agi~ 82 (475)
T PRK10719 7 LSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIIDKEIIYRSPIYFTPLLKQGEIDE----AAIKELIEEEYQKAGIA 82 (475)
T ss_pred EEEEEeccCceEEEEEEEEEEecccccccCceEEEeeeEEEEecCceecCCCCCccccH----HHHHHHHHHHHHHcCCC
Confidence 4589999999999876654 11100000 00 112222211111 1123444 45677777778889999
Q ss_pred cccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEe-----Cc----HHHHHHhhc--CCCCCEEEEEeCCCceeE
Q 026689 92 RSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVH-----ND----ALAALASGT--MGKLHGCVLIAGTGTIAY 160 (235)
Q Consensus 92 ~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~-----ND----a~~a~~~~~--~g~~~gi~li~GTGs~~~ 160 (235)
+++|..=..=++|.... ..++.+.+++.-.......|. =+ ..++..+.. ......+++=+|.|.--.
T Consensus 83 ~~die~~ahIITg~~~~--~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLseEke~gVa~IDIGgGTT~i 160 (475)
T PRK10719 83 PESIDSGAVIITGETAR--KENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEERNTRVLNIDIGGGTANY 160 (475)
T ss_pred HHHccccEEEEEechhH--HHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhhhhccCceEEEEeCCCceEE
Confidence 99887533445665433 235666665421000011100 01 121111111 122345677889888777
Q ss_pred EEecCCcEEE
Q 026689 161 GFTEDGRDAR 170 (235)
Q Consensus 161 g~~~~G~~~~ 170 (235)
++..+|++..
T Consensus 161 aVf~~G~l~~ 170 (475)
T PRK10719 161 ALFDAGKVID 170 (475)
T ss_pred EEEECCEEEE
Confidence 7778886553
No 119
>PRK13411 molecular chaperone DnaK; Provisional
Probab=84.66 E-value=41 Score=33.30 Aligned_cols=88 Identities=15% Similarity=0.017 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHHHH-HHcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC----
Q 026689 69 GEDAARETIEKVMADAL-LKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---- 143 (235)
Q Consensus 69 ~~~~~~~~i~~~i~~~l-~~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~---- 143 (235)
.|+++...+..-+.+.. ...+ .++..++|.+|...+...+..+++..+. .+. ..+.+.|+..+|+++-..
T Consensus 109 ~peei~a~iL~~lk~~ae~~lg---~~v~~~VITVPa~f~~~qR~a~~~Aa~~-AGl-~v~~li~EPtAAAl~y~~~~~~ 183 (653)
T PRK13411 109 TPQEISAMILQKLKQDAEAYLG---EPVTQAVITVPAYFTDAQRQATKDAGTI-AGL-EVLRIINEPTAAALAYGLDKQD 183 (653)
T ss_pred CHHHHHHHHHHHHHHHHHHHhC---CCcceEEEEECCCCCcHHHHHHHHHHHH-cCC-CeEEEecchHHHHHHhcccccC
Confidence 45665555444444332 2222 2466778999998766655555555433 343 467899999998875321
Q ss_pred CCCCEEEEEeCCCceeEE
Q 026689 144 GKLHGCVLIAGTGTIAYG 161 (235)
Q Consensus 144 g~~~gi~li~GTGs~~~g 161 (235)
.....+|+=+|.|..-..
T Consensus 184 ~~~~vlV~DlGgGT~dvs 201 (653)
T PRK13411 184 QEQLILVFDLGGGTFDVS 201 (653)
T ss_pred CCCEEEEEEcCCCeEEEE
Confidence 123456777788764333
No 120
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=84.21 E-value=3.8 Score=32.69 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=35.0
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcC
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSG 89 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~ 89 (235)
+||||-|.++|-+++++..++ .-+.+......+... .+..+-+..|.+.+.+++++..
T Consensus 1 ILGIDPgl~~tG~avi~~~~~------~~~~i~~G~I~t~~~--~~~~~Rl~~I~~~l~~li~~~~ 58 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGG------KLRLIDYGTIKTSSK--DSLPERLKEIYEELEELIEEYN 58 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETT------EEEEEEEEEEE---S----HHHHHHHHHHHHHHHHHHH-
T ss_pred CEEECCCCCCeeEEEEEeeCC------EEEEEEeCeEECCCC--CCHHHHHHHHHHHHHHHHHhhC
Confidence 699999999999999997211 223444444333221 3556667788888888888764
No 121
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=83.83 E-value=3.8 Score=36.41 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=28.0
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~ 61 (235)
+.++.||=|+|++|+.+++. +|+++.+.+..
T Consensus 5 ~~~i~iDWGTT~~R~wL~~~---------dg~~l~~r~~~ 35 (306)
T COG3734 5 PAYIAIDWGTTNLRAWLVRG---------DGAVLAERRSE 35 (306)
T ss_pred ceEEEEecCCccEEEEEEcC---------Ccceeeeeccc
Confidence 47999999999999999998 99999988764
No 122
>PTZ00466 actin-like protein; Provisional
Probab=83.19 E-value=37 Score=31.16 Aligned_cols=92 Identities=21% Similarity=0.247 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCEEEEEe
Q 026689 74 RETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIA 153 (235)
Q Consensus 74 ~~~i~~~i~~~l~~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~g~~~gi~li~ 153 (235)
|+.+...++.++++..+.+++- .+.+.-+-......+..+.+.|=+.|.. ..+.+.+++.+++++. |..+++||-+
T Consensus 86 wd~~e~iw~~~f~~l~v~~~~~-pvllte~~~~~~~~re~~~e~lFE~~~~-p~~~~~~~~~lsl~a~--g~~tglVVD~ 161 (380)
T PTZ00466 86 WNDMENIWIHVYNSMKINSEEH-PVLLTEAPLNPQKNKEKIAEVFFETFNV-PALFISIQAILSLYSC--GKTNGTVLDC 161 (380)
T ss_pred HHHHHHHHHHHHhhcccCCccC-eEEEecCccccHHHHHHHHHHHhccCCC-CeEEEecchHHHHHhc--CCceEEEEeC
Confidence 5666666666665555555432 3434434334344456666666666763 4588899999999853 5578999999
Q ss_pred CCCceeEEEecCCcEE
Q 026689 154 GTGTIAYGFTEDGRDA 169 (235)
Q Consensus 154 GTGs~~~g~~~~G~~~ 169 (235)
|-+..-..=+.+|...
T Consensus 162 G~~~t~v~PV~~G~~~ 177 (380)
T PTZ00466 162 GDGVCHCVSIYEGYSI 177 (380)
T ss_pred CCCceEEEEEECCEEe
Confidence 9987433234677654
No 123
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=83.07 E-value=28 Score=29.59 Aligned_cols=100 Identities=17% Similarity=0.105 Sum_probs=71.0
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEec
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi 102 (235)
++|+||--+..+-++|++.. +++++......... .--+++...+++++.+++.+..++.+|.++
T Consensus 2 ~iLaiDTs~~~~s~ai~~~~--------~~~vl~~~~~~~~r-------~hse~l~~~i~~ll~~~~~~~~dld~iav~- 65 (220)
T COG1214 2 KILAIDTSTSALSVALYLAD--------DGKVLAEHTEKLKR-------NHAERLMPMIDELLKEAGLSLQDLDAIAVA- 65 (220)
T ss_pred cEEEEEcChhhhhhheeecC--------CCcEEEEEEEeccc-------cHHHHHHHHHHHHHHHcCCCHHHCCEEEEc-
Confidence 58999999999888887752 67888877654321 123477888889999999888899998775
Q ss_pred cCCCCccH---HHHHHHHHHhhCCCCceEEEeCcHHHHHHh
Q 026689 103 SGVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALAS 140 (235)
Q Consensus 103 ~G~~~~~~---~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~ 140 (235)
-||.+-+. ..-+.+-|.-.++ .|++-.|--++.+..
T Consensus 66 ~GPGSFTGlRIG~~~AkgLA~~l~--iplvgvssL~~~A~~ 104 (220)
T COG1214 66 KGPGSFTGLRIGVAFAKGLALALN--IPLVGVSSLEALAQG 104 (220)
T ss_pred cCCCcccchhhHHHHHHHHHHHcC--CCEEEeCHHHHHHHh
Confidence 35654332 3455556666665 899888877766654
No 124
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=82.61 E-value=9.6 Score=30.98 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=36.9
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCC---EEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcC
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLP---VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSG 89 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~---il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~ 89 (235)
.+||||-|.++|=+++++. +++ .+......+. . ..+..+-+..|.+.+.+++++..
T Consensus 3 ~iLGIDPgl~~tG~avi~~---------~~~~~~~~~~G~i~t~-~-~~~~~~Rl~~I~~~l~~~i~~~~ 61 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEV---------EGRRLSYVASGVIRTP-S-DLDLPERLKQIYDGLSELIDEYQ 61 (164)
T ss_pred EEEEEccccCceeEEEEEe---------cCCeEEEEEeeEEECC-C-CCCHHHHHHHHHHHHHHHHHHhC
Confidence 5899999999999999997 444 2333332222 1 13444556677777778877653
No 125
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=82.18 E-value=51 Score=32.34 Aligned_cols=89 Identities=11% Similarity=-0.051 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHHHHHH-cCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc--C-C
Q 026689 69 GEDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--M-G 144 (235)
Q Consensus 69 ~~~~~~~~i~~~i~~~l~~-~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~--~-g 144 (235)
.|+++...+..-+.+..++ .+ .++..+++.+|..-+...+..+++..+. .+. ..+.+.|+..+|+++-. . .
T Consensus 117 speei~a~iL~~lk~~ae~~lg---~~v~~aVITVPa~f~~~qR~a~~~Aa~~-AGl-~v~~li~EPtAAAlay~~~~~~ 191 (595)
T PRK01433 117 RIPEIAAEIFIYLKNQAEEQLK---TNITKAVITVPAHFNDAARGEVMLAAKI-AGF-EVLRLIAEPTAAAYAYGLNKNQ 191 (595)
T ss_pred cHHHHHHHHHHHHHHHHHHHhC---CCcceEEEEECCCCCHHHHHHHHHHHHH-cCC-CEEEEecCcHHHHHHHhcccCC
Confidence 4666665555555554332 22 2466778999998776555555555433 343 45789999998877532 1 1
Q ss_pred CCCEEEEEeCCCceeEEE
Q 026689 145 KLHGCVLIAGTGTIAYGF 162 (235)
Q Consensus 145 ~~~gi~li~GTGs~~~g~ 162 (235)
....+|+=+|-|..-..+
T Consensus 192 ~~~vlV~DlGGGT~DvSi 209 (595)
T PRK01433 192 KGCYLVYDLGGGTFDVSI 209 (595)
T ss_pred CCEEEEEECCCCcEEEEE
Confidence 234567777877644443
No 126
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=82.03 E-value=4.8 Score=35.33 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=19.3
Q ss_pred CCcEEEEEEcCccceEEEEEeC
Q 026689 20 GREVILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 20 m~~~~LgiD~GgT~t~~~l~d~ 41 (235)
|...++|||-|+|.++++++|.
T Consensus 1 ~~m~fVGiDHGTsgi~~ai~d~ 22 (332)
T COG4020 1 MTMMFVGIDHGTSGIKFAIYDG 22 (332)
T ss_pred CceEEEeecCCCcceEEEEEcC
Confidence 3447899999999999999996
No 127
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=81.30 E-value=17 Score=31.81 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=28.3
Q ss_pred ceEEEeCcHHHHHHhhc---CCC--CCEEEEEeCCCceeEEEecCCc--EEEeCCCC
Q 026689 126 VRLYVHNDALAALASGT---MGK--LHGCVLIAGTGTIAYGFTEDGR--DARAAGAG 175 (235)
Q Consensus 126 ~~v~v~NDa~~a~~~~~---~g~--~~gi~li~GTGs~~~g~~~~G~--~~~~Gg~G 175 (235)
..|++++|+..-.++-. .++ -+-+++.+|+|+.-. ..+|. .-|.||-+
T Consensus 120 ~evFv~~d~~~e~~~~~~~~~~h~lypyilvNiGsGvSil--kvtgpsqf~RvGGss 174 (342)
T COG5146 120 AEVFVEFDAASEGLGILLKEQGHDLYPYILVNIGSGVSIL--KVTGPSQFERVGGSS 174 (342)
T ss_pred HHHeeeeccccchhhhhhhhccccccceeeEeccCCeEEE--EecCcchhccccccc
Confidence 57899999875443321 122 345788999997433 23453 44666643
No 128
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=81.20 E-value=39 Score=29.97 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=49.2
Q ss_pred ceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCC---CCCEEEEEeCCCceeEEEecCCcEEE
Q 026689 95 VRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMG---KLHGCVLIAGTGTIAYGFTEDGRDAR 170 (235)
Q Consensus 95 i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~g---~~~gi~li~GTGs~~~g~~~~G~~~~ 170 (235)
..-+.+.+|...+......+.+.++. ++. ..+.+.|...+|+++.... ...++++-+|.|..-..++.+|....
T Consensus 100 ~~~vvit~P~~~~~~~r~~~~~~~e~-~g~-~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~ 176 (335)
T PRK13930 100 KPRIVICVPSGITEVERRAVREAAEH-AGA-REVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY 176 (335)
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHH-cCC-CeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe
Confidence 44566888887766566666666554 553 4688999999888753221 23468889999876556666676554
No 129
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=80.44 E-value=3.7 Score=36.99 Aligned_cols=67 Identities=19% Similarity=0.249 Sum_probs=32.5
Q ss_pred EEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCC-CCc----cCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEE
Q 026689 26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-NHN----SVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (235)
Q Consensus 26 giD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~-~~~----~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igi 100 (235)
|||+|..++|++..+..++ .-.+......+.+ +.. -.+++. +.+.+++++.+.++.. +.+.+
T Consensus 1 GiDiG~~siK~v~l~~~~~------~~~l~~~~~~~~p~~~i~~g~i~d~~~----l~~~L~~~~~~~~~~~---k~v~~ 67 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGN------RFQLEAFASIPLPPGAISDGEIVDPEA----LAEALKELLKENKIKG---KKVVL 67 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--------EEEEEEEEE--TTSEETTEES-HHH----HHHHHHHHHHHHT-------EEEE
T ss_pred CeecCCCeEEEEEEEEcCC------ccEEEEEEEEECCCCCccCCCcCCHHH----HHHHHHHHHHHcCCCC---CeEEE
Confidence 8999999999998887211 2233343443322 111 134555 5555555666655533 23445
Q ss_pred eccCC
Q 026689 101 AVSGV 105 (235)
Q Consensus 101 gi~G~ 105 (235)
++||.
T Consensus 68 aip~~ 72 (340)
T PF11104_consen 68 AIPGS 72 (340)
T ss_dssp EE-GG
T ss_pred EeCCC
Confidence 66765
No 130
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=79.68 E-value=55 Score=31.85 Aligned_cols=89 Identities=15% Similarity=0.013 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHHHHH-HcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc--C--
Q 026689 69 GEDAARETIEKVMADALL-KSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--M-- 143 (235)
Q Consensus 69 ~~~~~~~~i~~~i~~~l~-~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~--~-- 143 (235)
.|+++...+...+.+... ..+ .++..+++.+|..-+...+..+.+..+. .+. ..+.+.|+..+|+++-. .
T Consensus 106 ~peel~a~~L~~l~~~a~~~~~---~~v~~~VItVPa~f~~~qR~a~~~Aa~~-AGl-~v~~li~EptAAAl~y~~~~~~ 180 (595)
T TIGR02350 106 TPQEISAMILQKLKKDAEAYLG---EKVTEAVITVPAYFNDAQRQATKDAGKI-AGL-EVLRIINEPTAAALAYGLDKSK 180 (595)
T ss_pred cHHHHHHHHHHHHHHHHHHHhC---CCCCeEEEEECCCCCHHHHHHHHHHHHH-cCC-ceEEEecchHHHHHHHhhcccC
Confidence 345544444444433222 222 2456677889988766555555554432 343 45789999998877522 1
Q ss_pred CCCCEEEEEeCCCceeEEE
Q 026689 144 GKLHGCVLIAGTGTIAYGF 162 (235)
Q Consensus 144 g~~~gi~li~GTGs~~~g~ 162 (235)
.....+++=+|.|..-..+
T Consensus 181 ~~~~vlV~D~Gggt~dvsv 199 (595)
T TIGR02350 181 KDEKILVFDLGGGTFDVSI 199 (595)
T ss_pred CCcEEEEEECCCCeEEEEE
Confidence 1234566677777643333
No 131
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=79.56 E-value=11 Score=29.85 Aligned_cols=44 Identities=25% Similarity=0.279 Sum_probs=31.1
Q ss_pred CcEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHH
Q 026689 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEK 79 (235)
Q Consensus 21 ~~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~ 79 (235)
...++|||-|.| |-++++|. +|+++...+... .+..++++.|.+
T Consensus 31 ~~lIVGiDPG~t-tgiAildL---------~G~~l~l~S~R~-----~~~~evi~~I~~ 74 (138)
T PF04312_consen 31 RYLIVGIDPGTT-TGIAILDL---------DGELLDLKSSRN-----MSRSEVIEWISE 74 (138)
T ss_pred CCEEEEECCCce-eEEEEEec---------CCcEEEEEeecC-----CCHHHHHHHHHH
Confidence 458999999876 55667899 999998877543 345555544443
No 132
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=79.26 E-value=20 Score=33.01 Aligned_cols=101 Identities=18% Similarity=0.150 Sum_probs=64.0
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEe---------CCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccc
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAA---------GCSNHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~---------~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 94 (235)
+|||.--=--|-++|+|. .+++++.... +.-.+. +-...=.++|..++++++.+++.++.+
T Consensus 34 VLgIETSCDDTavaVVd~---------~~~~~~~~i~~~t~~~~~yGGI~P~-~a~~~Hr~ni~~~iqral~aa~~~p~d 103 (405)
T KOG2707|consen 34 VLGIETSCDDTAVAVVDE---------FSHVLSSEIYSRTEIHRQYGGIIPT-VAQLLHRENIPRLIQRALDAAGLSPKD 103 (405)
T ss_pred eeeEecccCcceeeeecc---------cccccchhhhhhhHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 899998888899999998 6777765321 111121 112233678899999999999999999
Q ss_pred ceeeEEec-cCCC-CccHHHHHHHHHHhhCCCCceEEEeCcHHH
Q 026689 95 VRAVCLAV-SGVN-HPTDQQRILNWLRDIFPGNVRLYVHNDALA 136 (235)
Q Consensus 95 i~~igigi-~G~~-~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~ 136 (235)
+.+|++-. ||+. +-..+..+..-|...+. .|+.-..-.++
T Consensus 104 ldaIAVT~gPGl~lsL~vGl~fA~glA~~l~--kPlipVHHMeA 145 (405)
T KOG2707|consen 104 LDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQ--KPLIPVHHMEA 145 (405)
T ss_pred ceeEEEecCCCceeehhhhHHHHHHHHHhcc--CCccchhHHHH
Confidence 99886632 3332 22334455555655554 45544444444
No 133
>PTZ00004 actin-2; Provisional
Probab=78.38 E-value=54 Score=29.95 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHH-HHcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCEEEEE
Q 026689 74 RETIEKVMADAL-LKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152 (235)
Q Consensus 74 ~~~i~~~i~~~l-~~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~g~~~gi~li 152 (235)
|+.+...++.++ .+..+.+.+ ..+.+.-+-......+..+.+.|=+.|+. ..+.+.+++.+++++. +...++||-
T Consensus 80 ~d~~e~i~~~~~~~~l~v~~~~-~pvllte~~~~~~~~r~~~~e~lFE~~~~-~~~~~~~~~~ls~ya~--g~~tglVVD 155 (378)
T PTZ00004 80 WDDMEKIWHHTFYNELRVAPEE-HPVLLTEAPLNPKANREKMTQIMFETHNV-PAMYVAIQAVLSLYAS--GRTTGIVLD 155 (378)
T ss_pred HHHHHHHHHHHHHhhcccCCcc-CcceeecCCCCcHHHHHHHHHHHHhhcCC-ceEEeeccHHHHHHhc--CCceEEEEE
Confidence 455555555543 233343322 23444434444444556677777677773 4588999999998853 556899999
Q ss_pred eCCCceeEEEecCCcEEE
Q 026689 153 AGTGTIAYGFTEDGRDAR 170 (235)
Q Consensus 153 ~GTGs~~~g~~~~G~~~~ 170 (235)
+|-+..-..-+.||....
T Consensus 156 iG~~~t~v~pV~dG~~l~ 173 (378)
T PTZ00004 156 SGDGVSHTVPIYEGYSLP 173 (378)
T ss_pred CCCCcEEEEEEECCEEee
Confidence 999863333346786543
No 134
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=78.14 E-value=15 Score=29.26 Aligned_cols=57 Identities=21% Similarity=0.155 Sum_probs=36.6
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHc
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKS 88 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~ 88 (235)
+||||-|.+++=+++++..++ .-+++......+.. .....+-+..|.+.+.+++.+.
T Consensus 2 ILGIDPGl~~~G~av~~~~~~------~~~~~~~g~i~t~~--~~~~~~rl~~I~~~l~~~i~~~ 58 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGR------KLIYLASGVIRTSS--DAPLPSRLKTIYDGLNEVIDQF 58 (154)
T ss_pred EEEEccCcCceEEEEEEeeCC------eEEEEEeeEEECCC--CCCHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999986211 22333333333321 1344555667888888888765
No 135
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=77.82 E-value=21 Score=35.95 Aligned_cols=104 Identities=17% Similarity=0.134 Sum_probs=61.4
Q ss_pred cccCCC-cEEEEEEcCccc-eEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcc
Q 026689 16 EESGGR-EVILGLDGGTTS-TVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRS 93 (235)
Q Consensus 16 ~~~~m~-~~~LgiD~GgT~-t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~ 93 (235)
|..|+. +.++|+|-|.-. ++++++|. .|+.+.....-+.++.. .++... ..+..+..+.++
T Consensus 323 l~aP~~~~~~lglDPg~rtG~k~Avvd~---------tGk~l~~~~Iyp~~p~~-~~~~~~----~~l~~l~~~~~V--- 385 (780)
T COG2183 323 LAAPAKPKATLGLDPGFRTGCKVAVVDD---------TGKLLDTATIYPHPPVN-QSDKAE----ATLKDLIRKYKV--- 385 (780)
T ss_pred hcCCCCCcceeecCCccccccEEEEEcC---------CCceeceeEEEcCCCcc-chHHHH----HHHHHHHHHhCc---
Confidence 335543 478999999644 89999998 89999988765554432 234433 344444455544
Q ss_pred cceeeEEeccCCCCccHHHHHHHHHHhh-CCCCceEEEeCcHHHHHHh
Q 026689 94 AVRAVCLAVSGVNHPTDQQRILNWLRDI-FPGNVRLYVHNDALAALAS 140 (235)
Q Consensus 94 ~i~~igigi~G~~~~~~~~~l~~~l~~~-~~~~~~v~v~NDa~~a~~~ 140 (235)
++.+||. -+....++ ..+.+.|.+. ... ....|.|++-+..+.
T Consensus 386 e~iaIGn--gTaSrete-~fv~~vl~~~~~~~-~~~viVsEagAsvYs 429 (780)
T COG2183 386 ELIAIGN--GTASRETE-KFVADVLKELPKEK-VLKVIVSEAGASVYS 429 (780)
T ss_pred eEEEEec--CCcchhHH-HHHHHHHHhccCCC-CcEEEEcccccchhc
Confidence 3445544 44443333 3344555554 222 567788888766543
No 136
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=77.57 E-value=9.4 Score=36.66 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=26.8
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEe
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAA 60 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~ 60 (235)
.|=+++|+|+|++++.++|.. .|+++.+..+
T Consensus 164 ~YGvAvDlGTS~i~aqlVDL~--------sgevv~t~~T 194 (614)
T COG3894 164 AYGVAVDLGTSGIRAQLVDLK--------SGEVVATVIT 194 (614)
T ss_pred eeeeEEecccceeeeEEEecc--------CCcEEEeeec
Confidence 488999999999999999984 7888887754
No 137
>PTZ00281 actin; Provisional
Probab=76.32 E-value=59 Score=29.68 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHH-HHcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCEEEEE
Q 026689 74 RETIEKVMADAL-LKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152 (235)
Q Consensus 74 ~~~i~~~i~~~l-~~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~g~~~gi~li 152 (235)
|+.+...++.++ +...+.|.+ ..+.+.-|-......+..+.+.|=+.|.. ..+.+.+++.+++++ .|..+++||=
T Consensus 80 wd~~e~l~~~~f~~~l~v~p~~-~pvllte~~~~~~~~re~l~e~lFE~~~v-p~~~~~~~~~ls~ya--~g~~tglVVD 155 (376)
T PTZ00281 80 WDDMEKIWHHTFYNELRVAPEE-HPVLLTEAPLNPKANREKMTQIMFETFNT-PAMYVAIQAVLSLYA--SGRTTGIVMD 155 (376)
T ss_pred HHHHHHHHHHHHHhhccCCCcc-CeEEEecCCCCcHHHHHHHHHHHhcccCC-ceeEeeccHHHHHHh--cCCceEEEEE
Confidence 666666666655 334555543 34444444444444566677777666763 458999999999885 3557899999
Q ss_pred eCCCceeEEEecCCcEE
Q 026689 153 AGTGTIAYGFTEDGRDA 169 (235)
Q Consensus 153 ~GTGs~~~g~~~~G~~~ 169 (235)
+|.+..-..=+.+|...
T Consensus 156 iG~~~t~v~PV~dG~~~ 172 (376)
T PTZ00281 156 SGDGVSHTVPIYEGYAL 172 (376)
T ss_pred CCCceEEEEEEEecccc
Confidence 99987422223567544
No 138
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=76.20 E-value=83 Score=30.96 Aligned_cols=88 Identities=17% Similarity=0.061 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHH-cCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc--CC-C
Q 026689 70 EDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MG-K 145 (235)
Q Consensus 70 ~~~~~~~i~~~i~~~l~~-~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~--~g-~ 145 (235)
|+++...+...+.+...+ .+ .++..+++.+|...+...+..+++..+. .+. ..+.+.|+..+|+++-. .. .
T Consensus 126 p~ei~a~iL~~lk~~ae~~lg---~~v~~~VITVPa~f~~~qR~a~~~Aa~~-AGl-~v~~li~EPtAAAlay~~~~~~~ 200 (616)
T PRK05183 126 PVEVSAEILKALRQRAEETLG---GELDGAVITVPAYFDDAQRQATKDAARL-AGL-NVLRLLNEPTAAAIAYGLDSGQE 200 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CCcceEEEEECCCCCHHHHHHHHHHHHH-cCC-CeEEEecchHHHHHHhhcccCCC
Confidence 455544444444443322 22 2466777899998766665566665543 453 45789999998876421 11 2
Q ss_pred CCEEEEEeCCCceeEEE
Q 026689 146 LHGCVLIAGTGTIAYGF 162 (235)
Q Consensus 146 ~~gi~li~GTGs~~~g~ 162 (235)
...+++=+|-|..=..+
T Consensus 201 ~~vlV~DlGGGT~DvSv 217 (616)
T PRK05183 201 GVIAVYDLGGGTFDISI 217 (616)
T ss_pred CEEEEEECCCCeEEEEE
Confidence 34556677777643333
No 139
>PTZ00452 actin; Provisional
Probab=75.96 E-value=64 Score=29.54 Aligned_cols=92 Identities=21% Similarity=0.278 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHH-HHcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCEEEEE
Q 026689 74 RETIEKVMADAL-LKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152 (235)
Q Consensus 74 ~~~i~~~i~~~l-~~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~g~~~gi~li 152 (235)
|+.+...++.++ ++..+.|++ ..+.+.=|-...+..+..+.+.|=+.|.. ..+.+.+++.+++++ .|..+|+||-
T Consensus 79 wd~~e~iw~~~f~~~l~v~p~~-~pvlitE~~~~~~~~Re~l~eilFE~~~v-p~~~~~~~~~lslya--~g~~tglVVD 154 (375)
T PTZ00452 79 WDDIEIIWHHAFYNELCMSPED-QPVFMTDAPMNSKFNRERMTQIMFETFNT-PCLYISNEAVLSLYT--SGKTIGLVVD 154 (375)
T ss_pred HHHHHHHHHHHHHhhcCCCccc-CceeeecCCCCCHHHHHHHHHHHhhccCC-ceEEEechHHHHHHH--CCCceeeeec
Confidence 566666666654 334555543 23444434344445566777777777763 357889999999985 3567899999
Q ss_pred eCCCceeEEEecCCcEE
Q 026689 153 AGTGTIAYGFTEDGRDA 169 (235)
Q Consensus 153 ~GTGs~~~g~~~~G~~~ 169 (235)
+|.+..-..=+.+|...
T Consensus 155 iG~~~t~v~PV~dG~~l 171 (375)
T PTZ00452 155 SGEGVTHCVPVFEGHQI 171 (375)
T ss_pred CCCCcceEEEEECCEEe
Confidence 99986433234577544
No 140
>PLN02920 pantothenate kinase 1
Probab=75.08 E-value=73 Score=29.77 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=20.4
Q ss_pred CCEEEEEeCCCceeEEEecCCcEEEeCCCC
Q 026689 146 LHGCVLIAGTGTIAYGFTEDGRDARAAGAG 175 (235)
Q Consensus 146 ~~gi~li~GTGs~~~g~~~~G~~~~~Gg~G 175 (235)
.+.+++.+|||+.-.-+..+++..|.||-+
T Consensus 165 yPyLLVNIGSGVSilkV~~~~~~~RVgGTs 194 (398)
T PLN02920 165 YPYLLVNIGSGVSMIKVDGDGKFERVSGTS 194 (398)
T ss_pred CceEEEEcCCCEEEEEEeCCCcEEEEcccc
Confidence 356899999998444343345678888753
No 141
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=72.47 E-value=13 Score=30.08 Aligned_cols=57 Identities=16% Similarity=0.122 Sum_probs=37.2
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcC
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSG 89 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~ 89 (235)
+||||-|.+.|=+++++..++ +-..+......+. . .+..+-+..|.+.+.+++.+..
T Consensus 1 ILGIDPGl~~tG~gvi~~~~~------~~~~v~~G~I~t~-~--~~~~~RL~~I~~~l~~~i~~y~ 57 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQVGR------QLSYLGSGCIRTK-V--DDLPSRLKLIYAGVTEIITQFQ 57 (156)
T ss_pred CEeECcccccccEEEEEecCC------eEEEEEeeEEECC-C--CCHHHHHHHHHHHHHHHHHHhC
Confidence 589999999999999997211 2223443333332 2 3566667777888888887654
No 142
>PTZ00280 Actin-related protein 3; Provisional
Probab=72.38 E-value=49 Score=30.63 Aligned_cols=94 Identities=20% Similarity=0.229 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHH-HHcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC--------C
Q 026689 74 RETIEKVMADAL-LKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM--------G 144 (235)
Q Consensus 74 ~~~i~~~i~~~l-~~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~--------g 144 (235)
|+.+...++.++ +...+.+.+ ..+.+.-|-......+..+.+.+=+.|.. ..+.+.+++.+++++... +
T Consensus 81 wd~~e~l~~~~~~~~L~~~p~~-~~vllte~~~~~~~~Re~l~e~lFE~~~~-p~i~~~~~~~lslya~~~~~~~~~~~g 158 (414)
T PTZ00280 81 WDLMEKFWEQCIFKYLRCEPEE-HYFILTEPPMNPPENREYTAEIMFETFNV-KGLYIAVQAVLALRASWTSKKAKELGG 158 (414)
T ss_pred HHHHHHHHHHHHHHhhccCCCC-CceEEeeCCCCcHHHHHHHHHHHhhccCC-CeEEEecCHHHhHhhhcccccccccCC
Confidence 455555555443 333444433 23445445445445566777777777763 457999999999986421 5
Q ss_pred CCCEEEEEeCCCceeEEEecCCcEE
Q 026689 145 KLHGCVLIAGTGTIAYGFTEDGRDA 169 (235)
Q Consensus 145 ~~~gi~li~GTGs~~~g~~~~G~~~ 169 (235)
...++||-+|.+..-..-+.+|...
T Consensus 159 ~~tglVVDiG~~~T~i~PV~~G~~l 183 (414)
T PTZ00280 159 TLTGTVIDSGDGVTHVIPVVDGYVI 183 (414)
T ss_pred ceeEEEEECCCCceEEEEEECCEEc
Confidence 5689999999997433334577554
No 143
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=71.96 E-value=80 Score=28.87 Aligned_cols=135 Identities=18% Similarity=0.197 Sum_probs=81.4
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCC----CCCccCCHH----HHHHHHHHHHHHHHHHcCCCccc
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC----SNHNSVGED----AARETIEKVMADALLKSGSNRSA 94 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~----~~~~~~~~~----~~~~~i~~~i~~~l~~~~~~~~~ 94 (235)
.+|||..---.|-++|++. +. +++...... ..+-..=|+ +=.+.|-.++++++++++++.++
T Consensus 2 ~iLGIEtScDeT~vaIv~~---------~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~~~~d 71 (342)
T COG0533 2 IILGIETSCDETGVAIVDE---------EK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSLED 71 (342)
T ss_pred eEEEEEcccccceeEEEec---------cC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 5899999989999999986 43 555443211 111111133 33778889999999999999889
Q ss_pred ceeeEEe-ccCCCCc-cHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc--CC-CCCEE-EEEeCCCceeEEEecCCcE
Q 026689 95 VRAVCLA-VSGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MG-KLHGC-VLIAGTGTIAYGFTEDGRD 168 (235)
Q Consensus 95 i~~igig-i~G~~~~-~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~--~g-~~~gi-~li~GTGs~~~g~~~~G~~ 168 (235)
|.+|++. -||+.-. .-...+.+.|+-.++ .|++-.|=...=+++.. .+ ..+.+ .+++|-=+.-..+...|+.
T Consensus 72 ID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~--kPli~VnH~~gHi~a~~l~~~~~~p~v~LlVSGGHTqli~~~~~g~y 149 (342)
T COG0533 72 IDAIAVTAGPGLGGALLVGATAAKALALALN--KPLIPVNHLEGHIEAARLETGLAFPPVALLVSGGHTQLIAVRGIGRY 149 (342)
T ss_pred CCEEEEecCCCchhHHHHHHHHHHHHHHHhC--CCEeecchHHHHHHHHHhccCCCCCcEEEEEecCceEEEEEcCCCcE
Confidence 9988652 2333221 235667778877776 79988897764443322 12 33444 4455443433333222553
Q ss_pred E
Q 026689 169 A 169 (235)
Q Consensus 169 ~ 169 (235)
.
T Consensus 150 ~ 150 (342)
T COG0533 150 E 150 (342)
T ss_pred E
Confidence 3
No 144
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=71.65 E-value=7.3 Score=35.52 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=32.8
Q ss_pred EEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHH
Q 026689 26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEK 79 (235)
Q Consensus 26 giD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~ 79 (235)
|||-|+++..++.+|. .|+++...+.++.... .+|..+++.|.+
T Consensus 1 GIDpGT~s~dv~~~dd---------~g~v~~~~~ipt~~v~-~~p~~iv~~l~~ 44 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDD---------DGKVIFYFSIPTEEVA-KNPSIIVEELEE 44 (343)
T ss_pred CCCCCCCcEEEEEEcc---------CCcEEEEeeccHHHhh-hCHHHHHHHHHh
Confidence 6899999999999997 7999998887655443 566554444443
No 145
>PLN03184 chloroplast Hsp70; Provisional
Probab=70.56 E-value=1.2e+02 Score=30.26 Aligned_cols=67 Identities=16% Similarity=0.012 Sum_probs=41.5
Q ss_pred cceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc---CCCCCEEEEEeCCCceeEEE
Q 026689 94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT---MGKLHGCVLIAGTGTIAYGF 162 (235)
Q Consensus 94 ~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~---~g~~~gi~li~GTGs~~~g~ 162 (235)
.+..++|.+|...+...+..+++..+. .+. ..+.+.|+..+|+++-. ...+..+|+=+|.|..-..+
T Consensus 171 ~v~~~VITVPa~f~~~qR~a~~~Aa~~-AGl-~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi 240 (673)
T PLN03184 171 KVTKAVITVPAYFNDSQRTATKDAGRI-AGL-EVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSV 240 (673)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHHHH-CCC-CeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEE
Confidence 466777888988766555455555433 343 45789999998877532 12234566777777643333
No 146
>PRK13329 pantothenate kinase; Reviewed
Probab=69.68 E-value=74 Score=27.55 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=16.2
Q ss_pred EEEEEcCccceEEEEEe
Q 026689 24 ILGLDGGTTSTVCICMP 40 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d 40 (235)
+|-||+|-|.+|+++++
T Consensus 3 ~LliD~GNTriKw~~~~ 19 (249)
T PRK13329 3 FLAIDVGNTRLKWGLYD 19 (249)
T ss_pred EEEEEcCcchheeeEec
Confidence 78899999999999998
No 147
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=68.67 E-value=85 Score=27.83 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=41.5
Q ss_pred eeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---CCCCEEEEEeCCCceeEEEe
Q 026689 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTIAYGFT 163 (235)
Q Consensus 97 ~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~---g~~~gi~li~GTGs~~~g~~ 163 (235)
.+.+++|...+......++..++. ++. ..+.+.|+..+|+++... ....++++-+|.|..-..++
T Consensus 98 ~~vi~vP~~~~~~~r~~~~~a~~~-ag~-~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v 165 (334)
T PRK13927 98 RVVICVPSGITEVERRAVRESALG-AGA-REVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVI 165 (334)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHH-cCC-CeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEE
Confidence 456788855544444555555544 453 568999999998876422 12346888899987555554
No 148
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=68.32 E-value=13 Score=28.63 Aligned_cols=39 Identities=8% Similarity=0.118 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEeccCCC
Q 026689 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVN 106 (235)
Q Consensus 68 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G~~ 106 (235)
..++++++...+++.+++++.++.+++|..|.|.++-=.
T Consensus 13 n~~e~I~~at~eLl~~i~~~N~l~~~dIvSi~FT~T~DL 51 (118)
T PF07736_consen 13 NTPEEILEATRELLEEILERNELSPEDIVSIIFTVTPDL 51 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEE-TT-
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCCCc
Confidence 478999999999999999999999999999988776543
No 149
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=67.97 E-value=11 Score=33.80 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=41.4
Q ss_pred CCcEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHH------HHHH---HHHHHHHHHHcCC
Q 026689 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAA------RETI---EKVMADALLKSGS 90 (235)
Q Consensus 20 m~~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~------~~~i---~~~i~~~l~~~~~ 90 (235)
||.-+|.|.-|.|+||.++++. +-. +...... ++++++ .+++ .+++.+++.+.+.
T Consensus 1 ~~yriltINPGststKlaVfe~---------ek~-ife~tlr------hs~eEl~~f~~i~dQ~~fR~~~i~~~i~e~g~ 64 (358)
T COG3426 1 MMYRILTINPGSTSTKLAVFED---------EKE-IFEKTLR------HSLEELEKFKRIPDQFEFRKDAILEFIDEQGY 64 (358)
T ss_pred CceeEEEecCCCccceEEEecC---------chH-hhHHHhh------cCHHHHHHHhhhhHhHhHHHHHHHHHHHHhCC
Confidence 3445899999999999999985 322 3222111 222222 2222 2456667777777
Q ss_pred CcccceeeEEeccCCC
Q 026689 91 NRSAVRAVCLAVSGVN 106 (235)
Q Consensus 91 ~~~~i~~igigi~G~~ 106 (235)
+.+.+.++ +|=-|+.
T Consensus 65 ~i~~~dAv-vgRGGLL 79 (358)
T COG3426 65 NISKFDAV-VGRGGLL 79 (358)
T ss_pred CcCCccce-eecCccc
Confidence 77777775 4555553
No 150
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=66.58 E-value=37 Score=31.53 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=17.3
Q ss_pred EEEEEcCccceEEEEEeC
Q 026689 24 ILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~ 41 (235)
+|.|..|.|+||++||+.
T Consensus 2 ILVIN~GSSS~Kfalf~~ 19 (388)
T PF00871_consen 2 ILVINPGSSSTKFALFDM 19 (388)
T ss_dssp EEEEEEESSEEEEEEEET
T ss_pred EEEEcCChHhheeeeEEC
Confidence 799999999999999997
No 151
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=66.15 E-value=22 Score=33.79 Aligned_cols=51 Identities=20% Similarity=0.042 Sum_probs=32.7
Q ss_pred EEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHH-HHHHHHHHHHHcC
Q 026689 27 LDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARET-IEKVMADALLKSG 89 (235)
Q Consensus 27 iD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~-i~~~i~~~l~~~~ 89 (235)
+|+|.|.||+.++|.. +++++...+..++ + ..+.+..- +.++++++.++.+
T Consensus 1 ~DiGST~Tk~~a~~~~--------~~~~~~~~~~~tp--T--t~~dv~~G~~~~a~~~l~~~~~ 52 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIE--------GDAILATAHDITP--I--ESDHLAGGFFNKANEKLNEDLA 52 (463)
T ss_pred CCccccceEEEEEecC--------CCcEEEEEeccCc--c--chhhhhcchHHHHHHHHHHhcC
Confidence 5999999999999862 5666666665431 1 11244444 6666667666644
No 152
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=63.62 E-value=83 Score=27.31 Aligned_cols=25 Identities=20% Similarity=-0.053 Sum_probs=19.9
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEE
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARA 58 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~ 58 (235)
.+.+|+|+..|.+.++. +|+++...
T Consensus 137 ~~vvDIGggtt~i~v~~----------~g~~~~~~ 161 (267)
T PRK15080 137 GAVVDIGGGTTGISILK----------DGKVVYSA 161 (267)
T ss_pred cEEEEeCCCcEEEEEEE----------CCeEEEEe
Confidence 57899999999999886 46666654
No 153
>PRK00976 hypothetical protein; Provisional
Probab=63.20 E-value=16 Score=33.07 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=17.0
Q ss_pred EEEEEEcCccceEEEEEeC
Q 026689 23 VILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~ 41 (235)
+++|||-|+|.+|+++.+.
T Consensus 2 ~~~g~dhgt~~~~~~~~~~ 20 (326)
T PRK00976 2 MFVGIDHGTTGIRFAIIEG 20 (326)
T ss_pred eEEeecCCCccEEEEEEcC
Confidence 5899999999999999853
No 154
>PLN02902 pantothenate kinase
Probab=62.34 E-value=2e+02 Score=29.79 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=17.3
Q ss_pred EEEEEEcCccceEEEEEeCc
Q 026689 23 VILGLDGGTTSTVCICMPVI 42 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~ 42 (235)
.-+++|+|||-+|.+-+...
T Consensus 54 ~h~~~digg~l~klvy~s~~ 73 (876)
T PLN02902 54 SHLALDIGGSLIKLVYFSRH 73 (876)
T ss_pred eeEEEecCCceEEEEEEecc
Confidence 46899999999999988763
No 155
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=60.71 E-value=24 Score=34.70 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=17.3
Q ss_pred EEEEEEcCccceEEEEEeC
Q 026689 23 VILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~ 41 (235)
++|-||+|=|.+|+++++.
T Consensus 339 ~~LliD~GNTriKwa~~~~ 357 (592)
T PRK13325 339 RFLLLDGGNSRLKWAWVEN 357 (592)
T ss_pred eEEEEEcCcCceeEEEEcC
Confidence 5789999999999999985
No 156
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=60.63 E-value=77 Score=28.98 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=59.2
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCC---------------------------CccCC-------
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN---------------------------HNSVG------- 69 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~---------------------------~~~~~------- 69 (235)
++.+|+|.|++.+.++- +|+++.+...+... +...+
T Consensus 195 vav~~Igat~s~l~vi~----------~gk~ly~r~~~~g~~Qlt~~i~r~~~L~~~~a~~~k~~~~~P~~y~~~vl~~f 264 (354)
T COG4972 195 VAVFDIGATSSELLVIQ----------DGKILYTREVPVGTDQLTQEIQRAYSLTEEKAEEIKRGGTLPTDYGSEVLRPF 264 (354)
T ss_pred heeeeecccceEEEEEE----------CCeeeeEeeccCcHHHHHHHHHHHhCCChhHhHHHHhCCCCCCchhHHHHHHH
Confidence 68899999999998765 68888877654110 00000
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHH
Q 026689 70 EDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAA 137 (235)
Q Consensus 70 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a 137 (235)
.+++.+.|...++-++..++. .+|..|.++-+|. . ..-|.+.+.++++ .|+.+.|=....
T Consensus 265 ~~~l~~ei~Rslqfy~~~s~~--~~id~i~LaGggA--~--l~gL~~~i~qrl~--~~t~vanPf~~~ 324 (354)
T COG4972 265 LGELTQEIRRSLQFYLSQSEM--VDIDQILLAGGGA--S--LEGLAAAIQQRLS--IPTEVANPFAYM 324 (354)
T ss_pred HHHHHHHHHHHHHHHHhcccc--ceeeEEEEecCCc--c--hhhHHHHHHHHhC--CCeEeeCHHHHH
Confidence 123444555555555555543 3677777643333 2 2357788888887 789999875433
No 157
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=60.09 E-value=20 Score=27.65 Aligned_cols=37 Identities=8% Similarity=0.183 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEeccC
Q 026689 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (235)
Q Consensus 68 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G 104 (235)
-..+++++...+++.+++++.++.+++|..|.|.++-
T Consensus 13 nt~e~I~~at~eLl~~i~~~N~l~~edivSv~FT~T~ 49 (117)
T cd02185 13 NTAEEILEATRELLEEIIERNNIKPEDIISVIFTVTP 49 (117)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCC
Confidence 4689999999999999999999999999998886554
No 158
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=59.16 E-value=21 Score=27.52 Aligned_cols=37 Identities=8% Similarity=0.207 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEeccC
Q 026689 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (235)
Q Consensus 68 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G 104 (235)
-..+++++...+++.+++++.++.+++|..|.|.++-
T Consensus 13 nt~e~I~~at~eLl~~ii~~N~l~~edivSv~FT~T~ 49 (117)
T TIGR01796 13 NEAEEIGEAVAELLTELMERNELTPEDLISVIFTVTE 49 (117)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEecC
Confidence 4689999999999999999999999999998886554
No 159
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=59.08 E-value=28 Score=26.79 Aligned_cols=29 Identities=14% Similarity=0.072 Sum_probs=24.3
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~ 61 (235)
|+|||++-.+..+++++. .++.+...+..
T Consensus 1 ~vGiDv~k~~~~v~v~~~---------~~~~~~~~~~~ 29 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDP---------NGEKLRRFKFE 29 (144)
T ss_pred eEEEEcccCeEEEEEEcC---------CCcEEEEEEEe
Confidence 689999999999999998 77777766654
No 160
>PRK13327 pantothenate kinase; Reviewed
Probab=57.72 E-value=1.3e+02 Score=26.08 Aligned_cols=59 Identities=20% Similarity=0.079 Sum_probs=31.8
Q ss_pred EeCcHHHHHHhhcCCCCCEEEEEeCCCceeEEEecCCcEEEeCCCCccccccchHHHHHHHHHHHHHH
Q 026689 130 VHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIR 197 (235)
Q Consensus 130 v~NDa~~a~~~~~~g~~~gi~li~GTGs~~~g~~~~G~~~~~Gg~G~llgd~gSg~~ig~~al~~~~~ 197 (235)
+--|-.++++++.. .++.+|+-+||-+-.-.+..+|+.. || --.-|..+-+++|.....
T Consensus 97 LG~DR~~a~vaA~~-~~~~lVVD~GTA~TiD~v~~~g~~l--GG------~I~PG~~lm~~aL~~~Ta 155 (242)
T PRK13327 97 FGVDRFLALLGARG-DAPVLVVGVGTALTIDLLGADGLHH--GG------RIAASPTTMREALHARAV 155 (242)
T ss_pred ccHHHHHHHHHhhc-CCCEEEEEcCCceEEEEECCCCeEE--EE------EECccHHHHHHHHHHhhc
Confidence 33344556666554 4678999999977433343555332 21 123345555555554433
No 161
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=56.73 E-value=6.9 Score=34.80 Aligned_cols=127 Identities=17% Similarity=0.154 Sum_probs=60.3
Q ss_pred EcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEeccCCCC
Q 026689 28 DGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNH 107 (235)
Q Consensus 28 D~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G~~~ 107 (235)
|-|+|++|+.++|. +|+++.+.+.+.- ......+.+-+.+.+++.+.+.. + .+--+..|+.|...
T Consensus 1 DWGTSnlR~~l~~~---------~g~vl~~~~~~~G-i~~~~~~~f~~~l~~~~~~w~~~-~----~~pvi~~GMigS~~ 65 (287)
T PF05035_consen 1 DWGTSNLRAWLMDE---------DGQVLAERSSPVG-ILNLAPDGFEAVLRELLGDWLAA-P----PLPVIASGMIGSRQ 65 (287)
T ss_dssp EE-SS-EEEEEE-C---------TTEEEEEEEES---CCHHCCH-HCHHHHHHCCCTT-S-T----T--EEEECGGGSTT
T ss_pred CCchhhhhhheecC---------CCcEEeeecCCcC-hhhcCcccHHHHHHHHHHHHhhc-C----CCeEEEeCCccccc
Confidence 77999999999998 8999998886422 11122233333444444444433 1 12223345555432
Q ss_pred c----------cHHHHHHHHHHhhCCCCceEEEe---------CcH----HHHHHhhc--CCCCCEEEEEeCCCceeEEE
Q 026689 108 P----------TDQQRILNWLRDIFPGNVRLYVH---------NDA----LAALASGT--MGKLHGCVLIAGTGTIAYGF 162 (235)
Q Consensus 108 ~----------~~~~~l~~~l~~~~~~~~~v~v~---------NDa----~~a~~~~~--~g~~~gi~li~GTGs~~~g~ 162 (235)
. -.-..+...+...-....+|.+. .|+ ++-++|.. ....+++++.-||=+- +..
T Consensus 66 Gw~Eapy~~~Pa~l~~la~~~~~~~~~~~~v~ivPGl~~~~~~~DVMRGEEtqi~G~l~~~~~~~~~i~LPGTHsK-Wv~ 144 (287)
T PF05035_consen 66 GWQEAPYLPCPAGLADLAAALVRVADPGRPVHIVPGLKQRQGSPDVMRGEETQIAGALSLNPDGDGLICLPGTHSK-WVR 144 (287)
T ss_dssp SSS---EEESSEECCHCHHC-EEECSSSTTEEE--EEEEETTCCEEESSHHHHHHHHHCCCHSSECEEEE-STTEE-EEE
T ss_pred ccccCCccCCCCChhHHHhhcEEecCCCceEEEEcCcCcCCCCccccccHHHHHHHHHhcCCCCCeEEEccCCCce-EEE
Confidence 1 01112222222211000222221 122 34444432 3456899999999885 777
Q ss_pred ecCCcEEE
Q 026689 163 TEDGRDAR 170 (235)
Q Consensus 163 ~~~G~~~~ 170 (235)
+.+|++..
T Consensus 145 v~~g~I~~ 152 (287)
T PF05035_consen 145 VEDGRIVS 152 (287)
T ss_dssp EETTEEEE
T ss_pred ECCCcEEE
Confidence 78887764
No 162
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=55.19 E-value=98 Score=26.89 Aligned_cols=94 Identities=17% Similarity=0.212 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHH---HHHHcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHH---h---h
Q 026689 71 DAARETIEKVMAD---ALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---S---G 141 (235)
Q Consensus 71 ~~~~~~i~~~i~~---~l~~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~---~---~ 141 (235)
++.++++.+++++ ++.+.++ +++.+ ++.+.+=...+...+.+.+++.++ .++.|.+..+=|.+ | .
T Consensus 34 ~e~i~r~~~~L~~f~~~~~~~~v--~~i~~--vATsA~R~A~N~~~~~~~i~~~tG--i~i~iIsgeeEa~l~~~gv~~~ 107 (285)
T PF02541_consen 34 EEAIERAIDALKRFKEILKDYGV--EKIRA--VATSALREAKNSDEFLDRIKKETG--IDIEIISGEEEARLSFLGVLSS 107 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTG--SEEEE--EEEHHHHHSTTHHHHHHHHHHHHS--S-EEEE-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC--CEEEE--EhhHHHHhCcCHHHHHHHHHHHhC--CceEEecHHHHHHHHHHHHHhh
Confidence 3456666677766 4455554 34554 566776555566778888888888 78888777663322 2 2
Q ss_pred cCCCCCEEEEEeCCCceeEEEecCCcEEE
Q 026689 142 TMGKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (235)
Q Consensus 142 ~~g~~~gi~li~GTGs~~~g~~~~G~~~~ 170 (235)
....++++++=+|.||-=..+..++++..
T Consensus 108 l~~~~~~lviDIGGGStEl~~~~~~~~~~ 136 (285)
T PF02541_consen 108 LPPDKNGLVIDIGGGSTELILFENGKVVF 136 (285)
T ss_dssp STTTSSEEEEEEESSEEEEEEEETTEEEE
T ss_pred ccccCCEEEEEECCCceEEEEEECCeeeE
Confidence 22557899999999997666666776654
No 163
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=52.37 E-value=1.7e+02 Score=25.97 Aligned_cols=28 Identities=21% Similarity=0.100 Sum_probs=22.7
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~ 61 (235)
++-||+|+..|.+.++. +|.++.....+
T Consensus 190 ~~lvdiG~~~t~l~i~~----------~g~~~~~r~i~ 217 (348)
T TIGR01175 190 AALVDIGATSSTLNLLH----------PGRMLFTREVP 217 (348)
T ss_pred EEEEEECCCcEEEEEEE----------CCeEEEEEEee
Confidence 88999999999999997 46766666544
No 164
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=50.23 E-value=16 Score=32.35 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=15.0
Q ss_pred EEEEEEcCccceEEEEEeC
Q 026689 23 VILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~ 41 (235)
-.|.+|+|||+|.++++..
T Consensus 78 ~~i~vDmGGTTtDi~~i~~ 96 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIKD 96 (290)
T ss_dssp SEEEEEE-SS-EEEEEEET
T ss_pred CEEEEeCCCCEEEEEEEEC
Confidence 4899999999999999863
No 165
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=50.08 E-value=74 Score=28.50 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=21.9
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~ 61 (235)
..++-||+|...|.+.++. +|+++..+..+
T Consensus 180 ~~~~lvdiG~~~t~~~i~~----------~g~~~f~R~i~ 209 (340)
T PF11104_consen 180 ETVALVDIGASSTTVIIFQ----------NGKPIFSRSIP 209 (340)
T ss_dssp -EEEEEEE-SS-EEEEEEE----------TTEEEEEEEES
T ss_pred ceEEEEEecCCeEEEEEEE----------CCEEEEEEEEe
Confidence 3689999999999999988 47777766554
No 166
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=49.81 E-value=19 Score=32.56 Aligned_cols=20 Identities=30% Similarity=0.115 Sum_probs=17.4
Q ss_pred cEEEEEEcCccceEEEEEeC
Q 026689 22 EVILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~ 41 (235)
+-.|.+|+|||+++++++..
T Consensus 128 ~~~I~~DmGGTTtDi~~i~~ 147 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPIID 147 (318)
T ss_pred CCEEEEEcCccceeeEEecC
Confidence 45899999999999999863
No 167
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=44.24 E-value=2e+02 Score=24.47 Aligned_cols=26 Identities=19% Similarity=-0.026 Sum_probs=20.5
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEE
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAA 59 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~ 59 (235)
.+.+|+|+..|.+.++. +|+++....
T Consensus 110 ~~vvDiGggtt~i~i~~----------~G~i~~~~~ 135 (239)
T TIGR02529 110 GAVVDVGGGTTGISILK----------KGKVIYSAD 135 (239)
T ss_pred cEEEEeCCCcEEEEEEE----------CCeEEEEEe
Confidence 48999999999998876 466776543
No 168
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=44.24 E-value=44 Score=29.83 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=27.6
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHH
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMAD 83 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 83 (235)
..+|.||+||+.+.++++.. ....+.+.+. .. +.+...+.+.+.+.+++
T Consensus 164 ~~~lVVDIGG~T~Dv~~v~~---------~~~~~~~~~~-~~---~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 164 ESVLVVDIGGRTTDVAVVRG---------GLPDISKCSG-TP---EIGVSDLYDAIAQALRS 212 (318)
T ss_dssp SEEEEEEE-SS-EEEEEEEG---------GG--EEEEEE-ET---TSSTHHHHHHHHHHTT-
T ss_pred CcEEEEEcCCCeEEeeeecC---------Cccccchhcc-CC---chhHHHHHHHHHHHHHH
Confidence 46899999999999998875 3344444332 11 24556666666555443
No 169
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=44.09 E-value=54 Score=28.17 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEE
Q 026689 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLY 129 (235)
Q Consensus 68 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~ 129 (235)
.+++.+-..+...+++.+++-+ ...|++|.+|+. .+.+.|++.|+ .||.
T Consensus 153 ~~~~~~~~~l~~~~~~a~~edg-----AeaIiLGCAGms------~la~~Lq~~~g--vPVI 201 (230)
T COG4126 153 GPPEEAEALLVIEAAEALKEDG-----AEAIILGCAGMS------DLADQLQKAFG--VPVI 201 (230)
T ss_pred CChHHHHHHHHHHHHHHhhhcC-----CCEEEEcCccHH------HHHHHHHHHhC--CCcc
Confidence 4677777777777777776643 357889999986 34667777887 6764
No 170
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=43.03 E-value=82 Score=27.44 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHcCCCcccceeeEEeccCCCCccH---HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCC----
Q 026689 73 ARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALASGTMGK---- 145 (235)
Q Consensus 73 ~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G~~~~~~---~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~~g~---- 145 (235)
=.+.|..+++++++++++++++|.+|+++ .||.+.+. ...+.+.|...++ .|++=.|-..+-++......
T Consensus 29 H~~~L~~~i~~~l~~~~~~~~did~iavt-~GPGsftgLrvG~~~Ak~La~~~~--~Pli~v~~l~a~a~~~~~~~~~~~ 105 (268)
T PF00814_consen 29 HSENLPPLIEELLKEAGISLSDIDAIAVT-RGPGSFTGLRVGLSFAKGLALALN--IPLIGVSHLEAHALSARLSEGLKF 105 (268)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGGESEEEEE-EESS-HHHHHHHHHHHHHHHHHTT----EEEEEHHHHHHHHHHHHHTEES
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEe-cCCCcccccHHHHHHHHHHHHHhC--CCeEeeccHHHHHHhHhhhccccC
Confidence 36788899999999999999999998664 56655432 4566777777776 79988887775544332111
Q ss_pred CCEEEEEeCCCce
Q 026689 146 LHGCVLIAGTGTI 158 (235)
Q Consensus 146 ~~gi~li~GTGs~ 158 (235)
+-.+++-+|++..
T Consensus 106 P~~~~isa~~~~v 118 (268)
T PF00814_consen 106 PLVLLISAGHTEV 118 (268)
T ss_dssp EEEEEEECSTCEE
T ss_pred ceEEEEECCCccE
Confidence 1244555666664
No 171
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=41.85 E-value=2.4e+02 Score=24.71 Aligned_cols=122 Identities=17% Similarity=0.210 Sum_probs=74.3
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC---CC--CCc-cCCHHHHHHHHHHHHHHHHHHcCCCcccce
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG---CS--NHN-SVGEDAARETIEKVMADALLKSGSNRSAVR 96 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~---~~--~~~-~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 96 (235)
..||+.+...|+-+.++. ++++++..+.. ++ .+. ......-.+.+..++++++++++++.++|.
T Consensus 3 ialG~EGSANKlGvGiv~----------~~~iLaN~R~TYitPPG~GFlP~~TA~HHr~~il~Lv~~al~ea~v~~~diD 72 (336)
T KOG2708|consen 3 IALGLEGSANKLGVGIVR----------DGKILANPRHTYITPPGEGFLPRDTARHHRAWILGLVKQALEEAGVTSDDID 72 (336)
T ss_pred eEEecccccccceeeEEe----------cceeecCccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHcCCChhhCC
Confidence 568888888888888887 47888755332 11 111 123445567788999999999999999998
Q ss_pred eeEEe-ccCCCCccH-HHHHHHHHHhhCCCCceEEEeCcHHHHHH-h-hcCCCCCEEEEEeCCC
Q 026689 97 AVCLA-VSGVNHPTD-QQRILNWLRDIFPGNVRLYVHNDALAALA-S-GTMGKLHGCVLIAGTG 156 (235)
Q Consensus 97 ~igig-i~G~~~~~~-~~~l~~~l~~~~~~~~~v~v~NDa~~a~~-~-~~~g~~~gi~li~GTG 156 (235)
.|+.- -||...|-. ...+...|+.... .|+.-.|-+-.-.. + ...+.++-++|.+..|
T Consensus 73 ~icyTKGPGmgaPL~~vaivaRtlsllw~--kPlv~VNHCigHIEMGR~iTgA~nPvvLYvSGG 134 (336)
T KOG2708|consen 73 CICYTKGPGMGAPLSVVAIVARTLSLLWN--KPLVGVNHCIGHIEMGREITGAQNPVVLYVSGG 134 (336)
T ss_pred EEEEcCCCCCCCchhhHHHHHHHHHHHhC--CCcccchhhhhhhhhcceeccCCCCEEEEEeCC
Confidence 87642 245555544 2344555555443 78877776543221 1 1124445555555333
No 172
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.84 E-value=1e+02 Score=27.40 Aligned_cols=50 Identities=12% Similarity=0.114 Sum_probs=34.8
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHH
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADAL 85 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l 85 (235)
=.|.||.|..+|.++++|+ + +|.+-....+. ..+++++-..|.....-.|
T Consensus 228 palvVd~GngHttaalvde---------d-RI~gv~EHHT~---~Lspekled~I~rf~~GeL 277 (342)
T COG4012 228 PALVVDYGNGHTTAALVDE---------D-RIVGVYEHHTI---RLSPEKLEDQIIRFVEGEL 277 (342)
T ss_pred ceEEEEccCCceEEEEecC---------C-eEEEEeecccc---cCCHHHHHHHHHHHHhccc
Confidence 3789999999999999997 4 67665543332 2578776666666554433
No 173
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=41.46 E-value=99 Score=27.09 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=34.1
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHH
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVM 81 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i 81 (235)
=++.||+|-++|-++++. +++|.+-....+.. .+++.+++.|.+..
T Consensus 168 ~~~~vniGN~HTlaa~v~----------~~rI~GvfEHHT~~---l~~~kL~~~l~~l~ 213 (254)
T PF08735_consen 168 GIIVVNIGNGHTLAALVK----------DGRIYGVFEHHTGM---LTPEKLEEYLERLR 213 (254)
T ss_pred CeEEEEeCCccEEEEEEe----------CCEEEEEEecccCC---CCHHHHHHHHHHHH
Confidence 479999999999999994 68888776654432 57887666665543
No 174
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=39.53 E-value=25 Score=35.82 Aligned_cols=20 Identities=40% Similarity=0.370 Sum_probs=18.7
Q ss_pred cEEEEEEcCccceEEEEEeC
Q 026689 22 EVILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~ 41 (235)
+|+||+|+|++++=++|+|.
T Consensus 1 ~y~LGLDiGt~SvGWAVv~~ 20 (805)
T TIGR01865 1 EYILGLDIGIASVGWAIVED 20 (805)
T ss_pred CceeEEeecccceeEEEEec
Confidence 38999999999999999997
No 175
>PRK11678 putative chaperone; Provisional
Probab=37.36 E-value=24 Score=33.32 Aligned_cols=67 Identities=10% Similarity=-0.044 Sum_probs=38.2
Q ss_pred cceeeEEeccCCCC----ccHHHH----HHHHHHhhCCCCceEEEeCcHHHHHHhhc---CCCCCEEEEEeCCCceeEEE
Q 026689 94 AVRAVCLAVSGVNH----PTDQQR----ILNWLRDIFPGNVRLYVHNDALAALASGT---MGKLHGCVLIAGTGTIAYGF 162 (235)
Q Consensus 94 ~i~~igigi~G~~~----~~~~~~----l~~~l~~~~~~~~~v~v~NDa~~a~~~~~---~g~~~gi~li~GTGs~~~g~ 162 (235)
++..++|++|-.-+ +..+.. +.+.- +..+. ..+.+.|.-.+|+++-. ...+..+|+=.|-|..-..+
T Consensus 148 ~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa-~~AG~-~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Sv 225 (450)
T PRK11678 148 AITQAVIGRPVNFQGLGGEEANRQAEGILERAA-KRAGF-KDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSM 225 (450)
T ss_pred CCCcEEEEECCccccCCcchhHHHHHHHHHHHH-HHcCC-CEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEE
Confidence 36667789998743 122211 23332 23343 46899999998887521 12234667777877643344
No 176
>COG0817 RuvC Holliday junction resolvasome, endonuclease subunit [DNA replication, recombination, and repair]
Probab=37.35 E-value=93 Score=25.31 Aligned_cols=57 Identities=19% Similarity=0.144 Sum_probs=35.9
Q ss_pred EEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcC
Q 026689 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSG 89 (235)
Q Consensus 25 LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~ 89 (235)
||||-|...|=+.+++..++ .-..+......++. ..+..+-+..|.+.+.+++.+..
T Consensus 1 lGIDPGl~~~G~gvI~~~~~------~l~~v~~G~I~t~~--~~~l~~RL~~l~~~l~~vl~~~~ 57 (160)
T COG0817 1 LGIDPGLRRTGYGVIEVEGR------QLSYLASGVIRTSS--DAPLAERLKQLYDGLSEVLDEYQ 57 (160)
T ss_pred CCcCCCccccceEEEEccCC------eEEEEeeeEEecCC--CccHHHHHHHHHHHHHHHHHHhC
Confidence 68999999999999998321 22233333332321 13455666777777888877764
No 177
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=35.88 E-value=83 Score=28.28 Aligned_cols=64 Identities=20% Similarity=0.233 Sum_probs=38.6
Q ss_pred EEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEeccC
Q 026689 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (235)
Q Consensus 25 LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G 104 (235)
+|||-|+-++.+.-+|.. .|+++.....+.... ..+|.-+++.|. +.-.+.+ .|.+| +|-+|
T Consensus 1 ~GIDpGT~smdvfgfdDE--------sg~vi~~~~I~rdeV-tk~p~iiv~ii~----e~~~e~g----~~dai-vgpSG 62 (374)
T COG2441 1 IGIDPGTGSMDVFGFDDE--------SGNVIVDVAIPRDEV-TKSPRIIVDIIE----EVQAEVG----GIDAI-VGPSG 62 (374)
T ss_pred CCcCCCCCceeEEEEecC--------CCCEEEEEecCHHHh-ccCchHHHHHHH----HHhhhhc----cccce-ecccc
Confidence 489999988888777752 688888877653322 356665444444 4433332 24444 45566
Q ss_pred CC
Q 026689 105 VN 106 (235)
Q Consensus 105 ~~ 106 (235)
..
T Consensus 63 yG 64 (374)
T COG2441 63 YG 64 (374)
T ss_pred CC
Confidence 54
No 178
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=35.46 E-value=1.2e+02 Score=26.09 Aligned_cols=47 Identities=21% Similarity=0.377 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcccceee-EEeccCCCCccHHHHHHHH
Q 026689 71 DAARETIEKVMADALLKSGSNRSAVRAV-CLAVSGVNHPTDQQRILNW 117 (235)
Q Consensus 71 ~~~~~~i~~~i~~~l~~~~~~~~~i~~i-gigi~G~~~~~~~~~l~~~ 117 (235)
++..+--.++.++++++.+.++++|..+ .+..+|+..|.-...|.+.
T Consensus 98 ~~a~~L~~~Aa~~AL~~~g~~~~dIthlv~vs~TG~~~PglD~~l~~~ 145 (226)
T PF00195_consen 98 EEAPPLAEEAARKALAEAGLDPSDITHLVTVSCTGIAAPGLDARLINR 145 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGGECEEEEEESSSSECS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccceEEEEecCCcCCCchhHHHHhc
Confidence 4456666778888899999999999874 5788888777654333333
No 179
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.26 E-value=88 Score=30.83 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=30.7
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHH
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEK 79 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~ 79 (235)
.++|||-|.| |-.++.|. +|+++...+... .++.++++-|.+
T Consensus 245 lIVGIDPGiT-tgiAvldl---------dGevl~~~S~r~-----~~~~eVve~I~~ 286 (652)
T COG2433 245 LIVGIDPGIT-TGIAVLDL---------DGEVLDLESRRG-----IDRSEVVEFISE 286 (652)
T ss_pred eEEEeCCCce-eeEEEEec---------CCcEEeeecccc-----CCHHHHHHHHHH
Confidence 8999999987 45567898 999998776543 456666655544
No 180
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=34.83 E-value=72 Score=24.40 Aligned_cols=57 Identities=19% Similarity=0.249 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHH
Q 026689 75 ETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAAL 138 (235)
Q Consensus 75 ~~i~~~i~~~l~~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~ 138 (235)
+.|.+++.+++.+.++++..|..| +-++...+. +-...+.+.++ .|+..-....+..
T Consensus 15 ~~i~~ai~~~l~~~~~~~~~i~~i----asi~~K~~E-~~l~~~A~~l~--~~~~~~~~eeL~~ 71 (121)
T PF01890_consen 15 EEIEEAIEQALAEAGLSPRSIAAI----ASIDIKADE-PGLLELAEELG--IPLRFFSAEELNA 71 (121)
T ss_dssp HHHHHHHHHHHHHCT--GGGEEEE----EESSSSS---HHHHHHHHHCT--SEEEEE-HHHHHC
T ss_pred HHHHHHHHHHHHHcCCChhhccEE----EeccccCCC-HHHHHHHHHhC--CCeEEECHHHHhc
Confidence 356777777888888888888765 334433332 33345556676 7877776666553
No 181
>PRK02853 hypothetical protein; Provisional
Probab=34.37 E-value=2.5e+02 Score=22.74 Aligned_cols=94 Identities=13% Similarity=0.016 Sum_probs=52.5
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEe
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igig 101 (235)
+|-|.+-+=..++.+-|-++ +++.+.+....-+++. +-... .-.||+..-+++..+ +|++|.+|=+|
T Consensus 54 Py~L~Lsi~~~rLvfdI~~e---------~~~~~~~~~LsL~PfR-rvvKD-Yf~ICeSYy~Air~a--~p~qIEaIDMg 120 (161)
T PRK02853 54 PYRLHLSLQENRLVFDIRRE---------DGEPVATHILSLTPFR-RVVKD-YFMICESYYQAIRTA--TPSQIEAIDMG 120 (161)
T ss_pred CEEEEEEEecCeeEEEecCC---------CCCeeeEEEeccccHH-HHHHH-HHHHHHHHHHHHHhC--CHhHhhhhhhh
Confidence 35555555555555555555 6777777655433221 11111 223455444555543 67799998777
Q ss_pred ccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHH
Q 026689 102 VSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDAL 135 (235)
Q Consensus 102 i~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~ 135 (235)
==|+-+... +.|++++. -++.++.|.-
T Consensus 121 RRGiHNEgs-----~lL~eRL~--GKi~~D~dTA 147 (161)
T PRK02853 121 RRGLHNEGS-----ELLQERLE--GKIEVDFDTA 147 (161)
T ss_pred ccccchHHH-----HHHHHHHc--CCeeechHHH
Confidence 777653322 45556665 4677777763
No 182
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=33.64 E-value=1.2e+02 Score=26.44 Aligned_cols=29 Identities=24% Similarity=0.001 Sum_probs=23.8
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~ 61 (235)
-.+.+|+||.+|.+++++. +++....+.+
T Consensus 113 ~~lviDIGGGStEl~~~~~----------~~~~~~~Sl~ 141 (285)
T PF02541_consen 113 NGLVIDIGGGSTELILFEN----------GKVVFSQSLP 141 (285)
T ss_dssp SEEEEEEESSEEEEEEEET----------TEEEEEEEES
T ss_pred CEEEEEECCCceEEEEEEC----------CeeeEeeeee
Confidence 5788999999999999984 6777776665
No 183
>COG4401 AroH Chorismate mutase [Amino acid transport and metabolism]
Probab=33.51 E-value=1.3e+02 Score=23.15 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEecc
Q 026689 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (235)
Q Consensus 68 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~ 103 (235)
-.++++.+..+++++++.++...+|+++..+-++++
T Consensus 15 nt~eeI~~at~eLl~~i~~~N~~~pedv~sv~~svT 50 (125)
T COG4401 15 NTEEEILDATKELLEEIEEENITDPEDVVSVILSVT 50 (125)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCChhheeeEEEEec
Confidence 468999999999999999988888998888766543
No 184
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=33.39 E-value=1.5e+02 Score=27.58 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=42.9
Q ss_pred EEEEc-CccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccc-----eee
Q 026689 25 LGLDG-GTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAV-----RAV 98 (235)
Q Consensus 25 LgiD~-GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i-----~~i 98 (235)
||+|. ||+.+..-+-.. ++-.+.-... ..+ .-.++.+++..+.+++=+++.|++...| ..|
T Consensus 1 lGlDl~GG~~~~~~~~~~---------~~~~~~~~~~-~~~---~~~~~~~~~~~~ii~~Rv~~~Gv~e~~i~~~G~~~I 67 (397)
T TIGR01129 1 LGLDLRGGARVLLEVDMS---------TAVVLKLSEA-EVN---AIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRI 67 (397)
T ss_pred CcccCCCCeEEEEEEcCC---------cccccccchh-ccc---cccHHHHHHHHHHHHHHHhhcCCCCcEEEEeCCceE
Confidence 57888 888887766443 2211111110 111 1124567777788888777778765444 247
Q ss_pred EEeccCCCCccH
Q 026689 99 CLAVSGVNHPTD 110 (235)
Q Consensus 99 gigi~G~~~~~~ 110 (235)
-+-+||..+++.
T Consensus 68 ~V~lPg~~d~~~ 79 (397)
T TIGR01129 68 VVELPGVTDTSR 79 (397)
T ss_pred EEECCCCCCHHH
Confidence 789999876654
No 185
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.20 E-value=35 Score=34.05 Aligned_cols=18 Identities=28% Similarity=0.121 Sum_probs=16.5
Q ss_pred EEEEEcCccceEEEEEeC
Q 026689 24 ILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~ 41 (235)
++++|+|||+|+++++..
T Consensus 280 ~i~~DmGGTStDva~i~~ 297 (674)
T COG0145 280 AIVFDMGGTSTDVALIID 297 (674)
T ss_pred EEEEEcCCcceeeeeeec
Confidence 899999999999998873
No 186
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=31.20 E-value=98 Score=23.11 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCCcccceeeEEeccCCCCc
Q 026689 76 TIEKVMADALLKSGSNRSAVRAVCLAVSGVNHP 108 (235)
Q Consensus 76 ~i~~~i~~~l~~~~~~~~~i~~igigi~G~~~~ 108 (235)
.+.++++++++++++++++|..|.. .|...+
T Consensus 26 ~~~~~i~~al~~agi~~~~I~~i~~--hg~Gt~ 56 (119)
T PF02801_consen 26 ALARAIRRALADAGISPEDIDYIEA--HGTGTP 56 (119)
T ss_dssp HHHHHHHHHHHHHTS-GGGEEEEE------SSH
T ss_pred HHHHHHHHHHhhhccccccceeeee--eccccc
Confidence 4567788899999999999988754 444444
No 187
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=31.02 E-value=1.6e+02 Score=25.23 Aligned_cols=51 Identities=22% Similarity=0.175 Sum_probs=31.4
Q ss_pred EEEEEeCCCceeEEEecC----------CcEEEeCCCCccccc----------------------------cchHHHHHH
Q 026689 148 GCVLIAGTGTIAYGFTED----------GRDARAAGAGPILGD----------------------------WGSGYGIAA 189 (235)
Q Consensus 148 gi~li~GTGs~~~g~~~~----------G~~~~~Gg~G~llgd----------------------------~gSg~~ig~ 189 (235)
-+-+|+|||.+++.+-.. ++...--|||.+ +. --||.|+|.
T Consensus 3 ~iGlIlGTG~Na~Y~e~~~~i~~~~~~~~~~iINtEwg~f-~~~~~~~~~t~~D~~lD~~s~~pg~q~~EKmvsG~YLGE 81 (243)
T PF03727_consen 3 RIGLILGTGTNACYMEKTSNIPKLKGKDGKMIINTEWGNF-DNGLLDLPRTEYDKQLDAESPNPGFQPFEKMVSGMYLGE 81 (243)
T ss_dssp EEEEEESSSEEEEEEEEGGG-TTSSTSSSEEEEEE-GGGT-TTTTTTTTS-HHHHHHHHTSSSTTSSTTHHHTSHHHHHH
T ss_pred EEEEEEeCCeeEEEeeecccCccccccCCeEEEEeecCCC-CCCCccCCCCcccHHHhhhhhccCceEEeeEeceecHHH
Confidence 467999999997754321 334444566654 22 157999997
Q ss_pred HHHHHHHHHh
Q 026689 190 QALTAVIRAY 199 (235)
Q Consensus 190 ~al~~~~~~~ 199 (235)
-++..+++..
T Consensus 82 l~Rlvl~~l~ 91 (243)
T PF03727_consen 82 LVRLVLLDLI 91 (243)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666655543
No 188
>PRK07058 acetate kinase; Provisional
Probab=30.32 E-value=84 Score=29.37 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=20.3
Q ss_pred CCcEEEEEEcCccceEEEEEeC
Q 026689 20 GREVILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 20 m~~~~LgiD~GgT~t~~~l~d~ 41 (235)
|.+++|.|..|.|++|+.|++.
T Consensus 2 ~~~~iLviNaGSSSlKf~l~~~ 23 (396)
T PRK07058 2 SKPLLLTFNAGSSTVKIGLFEV 23 (396)
T ss_pred CCCEEEEEECChHhheeEEEec
Confidence 5679999999999999999996
No 189
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=30.02 E-value=44 Score=30.20 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=16.6
Q ss_pred EEEEEcCccceEEEEEeC
Q 026689 24 ILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~ 41 (235)
++|||-|+|.+|+++.+.
T Consensus 1 ~vGiDHGTtgi~f~~~~~ 18 (326)
T TIGR03281 1 FVGIDHGTTGIRFAIIDG 18 (326)
T ss_pred CccccCCCccEEEEEecC
Confidence 579999999999999987
No 190
>PRK13410 molecular chaperone DnaK; Provisional
Probab=29.31 E-value=1.5e+02 Score=29.58 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCC
Q 026689 73 ARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFP 123 (235)
Q Consensus 73 ~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~ 123 (235)
+++++.+.++++++++++++.+|..|.+ .|-.+ ....+++.+++.|+
T Consensus 307 l~~r~~~~i~~~L~~ag~~~~dId~VvL--VGGss--RiP~V~~~l~~~fg 353 (668)
T PRK13410 307 LLDRLLRPVKRALKDAGLSPEDIDEVVL--VGGST--RMPMVQQLVRTLIP 353 (668)
T ss_pred HHHHHHHHHHHHHHHcCCChhhCcEEEE--ECCcc--ccHHHHHHHHHHcC
Confidence 5677777788888888988888887644 33221 12356777888887
No 191
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=29.24 E-value=2.4e+02 Score=26.91 Aligned_cols=28 Identities=18% Similarity=-0.022 Sum_probs=21.8
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~ 61 (235)
.+.+|+||.+|-+++++. +++....+.+
T Consensus 134 ~lviDIGGGStEl~~~~~----------~~~~~~~Sl~ 161 (496)
T PRK11031 134 RLVVDIGGASTELVTGTG----------AQATSLFSLS 161 (496)
T ss_pred EEEEEecCCeeeEEEecC----------CceeeeeEEe
Confidence 699999999999999874 5666555543
No 192
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=27.67 E-value=51 Score=30.65 Aligned_cols=20 Identities=10% Similarity=0.102 Sum_probs=18.8
Q ss_pred cEEEEEEcCccceEEEEEeC
Q 026689 22 EVILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~ 41 (235)
.|.+.||.|.|++|+.|+..
T Consensus 8 ~y~vviDAGSsgsR~~vy~~ 27 (434)
T PF01150_consen 8 KYGVVIDAGSSGSRVHVYKW 27 (434)
T ss_dssp EEEEEEEEESSEEEEEEEEE
T ss_pred cEEEEEEcCCCCceEEEEEE
Confidence 58999999999999999987
No 193
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=27.07 E-value=2e+02 Score=27.68 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHH
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLK 87 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~ 87 (235)
..+|.+|+||+.+.+.++.. ....+........+. .|-..+-+.|.+.+.+-+.+
T Consensus 188 ~~vlv~D~Gggt~dvs~~~~---------~~~~~~v~~~~~~~~--lGG~~~D~~l~~~~~~~~~~ 242 (602)
T PF00012_consen 188 KTVLVVDFGGGTFDVSVVEF---------SNGQFEVLATAGDNN--LGGRDFDEALAEYLLEKFKK 242 (602)
T ss_dssp EEEEEEEEESSEEEEEEEEE---------ETTEEEEEEEEEETT--CSHHHHHHHHHHHHHHHHHH
T ss_pred cceeccccccceEeeeehhc---------ccccccccccccccc--cccceecceeeccccccccc
No 194
>COG2901 Fis Factor for inversion stimulation Fis, transcriptional activator [Transcription / DNA replication, recombination, and repair]
Probab=26.99 E-value=94 Score=22.82 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHH
Q 026689 187 IAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGYM 228 (235)
Q Consensus 187 ig~~al~~~~~~~dg~~~~t~l~~~~~~~~~~~~~~~l~~~~ 228 (235)
-..++++.+++.+||. +.+.++++++.....+=++.++.|.
T Consensus 30 sV~~~L~~Y~~~L~G~-~v~~lY~mVL~evE~PLL~~vM~~~ 70 (98)
T COG2901 30 SVKQALKNYFADLNGQ-DVNDLYEMVLAEVEQPLLDMVMQYT 70 (98)
T ss_pred HHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhHHHHHHHHHh
Confidence 3567899999999995 4566777777776654455555554
No 195
>PRK07157 acetate kinase; Provisional
Probab=26.90 E-value=1.1e+02 Score=28.65 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=17.9
Q ss_pred EEEEEEcCccceEEEEEeC
Q 026689 23 VILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~ 41 (235)
.+|.+..|.+++|+.|++.
T Consensus 4 ~iLvlN~GSSSlKf~lf~~ 22 (400)
T PRK07157 4 KILVINAGSSSIKWQLFDK 22 (400)
T ss_pred eEEEEECChHhheeEEEEC
Confidence 4999999999999999996
No 196
>PLN03184 chloroplast Hsp70; Provisional
Probab=26.74 E-value=1.8e+02 Score=29.00 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCC
Q 026689 73 ARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPG 124 (235)
Q Consensus 73 ~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~ 124 (235)
+++++.+.++++++++++.+.+|..|.+ .|-.+ .-..+++.+++.|+.
T Consensus 344 l~~r~~~~i~~~L~~a~~~~~dId~ViL--vGGss--riP~V~~~i~~~fg~ 391 (673)
T PLN03184 344 LLDRCKTPVENALRDAKLSFKDIDEVIL--VGGST--RIPAVQELVKKLTGK 391 (673)
T ss_pred HHHHHHHHHHHHHHHcCCChhHccEEEE--ECCcc--ccHHHHHHHHHHhCC
Confidence 5667777788889889988888888644 33321 123567788888873
No 197
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.40 E-value=2.3e+02 Score=19.80 Aligned_cols=49 Identities=10% Similarity=0.289 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCC-CchhHHHHHHHcCCCChhhHHHHHHhhccC
Q 026689 183 SGYGIAAQALTAVIRAYDGRGP-DTMLTSNILSTLELSSPDELIGYMIYKLTN 234 (235)
Q Consensus 183 Sg~~ig~~al~~~~~~~dg~~~-~t~l~~~~~~~~~~~~~~~l~~~~y~~~~~ 234 (235)
.||+|.|+-.+..++.- .| .....+.++...|.+..+.=+..+|+.+++
T Consensus 20 ~G~fiark~~~k~lk~N---Ppine~~iR~M~~qmGqKpSe~kI~Qvm~~i~k 69 (71)
T COG3763 20 GGFFIARKQMKKQLKDN---PPINEEMIRMMMAQMGQKPSEKKINQVMRSIIK 69 (71)
T ss_pred HHHHHHHHHHHHHHhhC---CCCCHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 47999999998877763 22 355667788888988888888888887654
No 198
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=26.26 E-value=3.5e+02 Score=26.53 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=18.4
Q ss_pred cEEEEEEcCccceEEEEEeC
Q 026689 22 EVILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~ 41 (235)
+.+|.+|+||..+.+.++..
T Consensus 185 ~~vlV~D~GggT~dvsv~~~ 204 (627)
T PRK00290 185 EKILVYDLGGGTFDVSILEI 204 (627)
T ss_pred CEEEEEECCCCeEEEEEEEE
Confidence 47999999999999999987
No 199
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=26.10 E-value=2.6e+02 Score=24.99 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcccceeeEEeccCC
Q 026689 70 EDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGV 105 (235)
Q Consensus 70 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G~ 105 (235)
.++.-..+..++++++++.++.|++|..+.+..+..
T Consensus 80 ~~Eae~v~f~av~~LL~ktgv~p~dIdiLVvncs~f 115 (290)
T PF08392_consen 80 REEAEMVIFGAVDDLLAKTGVKPSDIDILVVNCSLF 115 (290)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECcCC
Confidence 455666788899999999999999998876665554
No 200
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=26.04 E-value=1.1e+02 Score=27.67 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCC
Q 026689 75 ETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFP 123 (235)
Q Consensus 75 ~~i~~~i~~~l~~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~ 123 (235)
+--.++.+++++.+++++++|..|.++.+-+++.-. .....+++.++
T Consensus 54 ~la~~Aa~~AL~~Agi~~~dIDlII~aT~tpd~~~P--s~A~~vq~~LG 100 (323)
T COG0332 54 DLAVEAARKALEDAGISPDDIDLIIVATSTPDHLFP--STACLVQARLG 100 (323)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEcCCcccCCC--hHHHHHHHHhC
Confidence 344677888999999999999999888888876421 33445555565
No 201
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=25.67 E-value=2e+02 Score=28.67 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeC
Q 026689 73 ARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHN 132 (235)
Q Consensus 73 ~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~N 132 (235)
+++++...+.+++.++++++.+|..|.+ -|-.+ .-..+++.+++.|+. .++.-.|
T Consensus 332 l~~r~~~~v~~~L~~a~~~~~dId~VvL--VGGss--riP~V~~~l~~~fg~-~~~~~~n 386 (657)
T PTZ00186 332 LIERSIAPCKQCMKDAGVELKEINDVVL--VGGMT--RMPKVVEEVKKFFQK-DPFRGVN 386 (657)
T ss_pred HHHHHHHHHHHHHHHcCCChhhCCEEEE--ECCcc--cChHHHHHHHHHhCC-CccccCC
Confidence 3566667778888888988888887644 33221 223577888888873 3443333
No 202
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=25.21 E-value=3.2e+02 Score=23.98 Aligned_cols=28 Identities=21% Similarity=-0.091 Sum_probs=21.4
Q ss_pred EEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC
Q 026689 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (235)
Q Consensus 24 ~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~ 61 (235)
.+.+|+||.+|.+++++. +++....+.+
T Consensus 127 ~~v~DiGGGSte~~~~~~----------~~~~~~~Sl~ 154 (300)
T TIGR03706 127 GLVVDIGGGSTELILGKD----------FEPGEGVSLP 154 (300)
T ss_pred cEEEEecCCeEEEEEecC----------CCEeEEEEEc
Confidence 489999999999999874 5666555443
No 203
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=25.02 E-value=3.3e+02 Score=26.83 Aligned_cols=21 Identities=19% Similarity=0.055 Sum_probs=18.8
Q ss_pred CcEEEEEEcCccceEEEEEeC
Q 026689 21 REVILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 21 ~~~~LgiD~GgT~t~~~l~d~ 41 (235)
...++.+|+||..+.+.++..
T Consensus 200 ~~~vlV~DlGGGT~DvSv~~~ 220 (616)
T PRK05183 200 EGVIAVYDLGGGTFDISILRL 220 (616)
T ss_pred CCEEEEEECCCCeEEEEEEEe
Confidence 357899999999999999987
No 204
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=24.88 E-value=1.2e+02 Score=27.03 Aligned_cols=19 Identities=21% Similarity=0.086 Sum_probs=16.5
Q ss_pred cEEEEEEcCccceEEEEEe
Q 026689 22 EVILGLDGGTTSTVCICMP 40 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d 40 (235)
..++.||+|+..|.+.+++
T Consensus 167 ~~~lVIDIG~~TtD~~~~~ 185 (320)
T TIGR03739 167 EQSLIIDPGYFTFDWLVAR 185 (320)
T ss_pred CcEEEEecCCCeeeeehcc
Confidence 4679999999999998775
No 205
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=24.62 E-value=2.8e+02 Score=25.12 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=20.6
Q ss_pred EEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeC
Q 026689 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~ 61 (235)
-.+.||+|+..|.++++.. |.++...+..
T Consensus 146 g~miVDIG~GtTdiavisl----------ggiv~s~si~ 174 (326)
T PF06723_consen 146 GSMIVDIGGGTTDIAVISL----------GGIVASRSIR 174 (326)
T ss_dssp -EEEEEE-SS-EEEEEEET----------TEEEEEEEES
T ss_pred ceEEEEECCCeEEEEEEEC----------CCEEEEEEEE
Confidence 4689999999999999986 5666666543
No 206
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=24.05 E-value=3.7e+02 Score=26.13 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=18.8
Q ss_pred CcEEEEEEcCccceEEEEEeC
Q 026689 21 REVILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 21 ~~~~LgiD~GgT~t~~~l~d~ 41 (235)
.+.+|.+|+||..+.+.++..
T Consensus 182 ~~~vlV~D~Gggt~dvsv~~~ 202 (595)
T TIGR02350 182 DEKILVFDLGGGTFDVSILEI 202 (595)
T ss_pred CcEEEEEECCCCeEEEEEEEe
Confidence 457899999999999999987
No 207
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=23.68 E-value=6.7e+02 Score=24.24 Aligned_cols=62 Identities=8% Similarity=-0.026 Sum_probs=40.0
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCC----EEEEE----Ee-CCCCCccCCHHHHHHHHHHHHHHHHHHcC
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLP----VLARA----AA-GCSNHNSVGEDAARETIEKVMADALLKSG 89 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~----il~~~----~~-~~~~~~~~~~~~~~~~i~~~i~~~l~~~~ 89 (235)
+|=+.||.|.|.||+-|+-..-. .|+ ++.+. +. |.......+|+.+-..|..+++-+.+..+
T Consensus 9 kYgiviDaGSSgTrl~Vy~w~~~------~g~~~~~i~~~~~~~~k~~PGiSsfa~nP~~a~~~l~pLlefA~~~IP 79 (501)
T KOG1386|consen 9 KYGIVIDAGSSGTRLFVYKWPAE------SGNPLTGIVGQIYDCLKLGPGISSFADNPEGASVYLTPLLEFAKEHIP 79 (501)
T ss_pred eEEEEEecCCCCceEEEEeeccc------CCCcccCccchhhcccccCCChhhhccChhhhHHHHHHHHHHHHhhCC
Confidence 58899999999999999986211 233 11111 11 11112246788888889988888776543
No 208
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=23.61 E-value=52 Score=21.86 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=20.4
Q ss_pred HHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHH
Q 026689 194 AVIRAYDGRGPDTMLTSNILSTLELSSPDELIGYM 228 (235)
Q Consensus 194 ~~~~~~dg~~~~t~l~~~~~~~~~~~~~~~l~~~~ 228 (235)
.+++.+||......+.+.+.++|++ +++++..-+
T Consensus 21 ~Iw~~~~g~~t~~ei~~~l~~~y~~-~~~~~~~dv 54 (68)
T PF05402_consen 21 FIWELLDGPRTVEEIVDALAEEYDV-DPEEAEEDV 54 (68)
T ss_dssp HHHHH--SSS-HHHHHHHHHHHTT---HHHHHHHH
T ss_pred HHHHHccCCCCHHHHHHHHHHHcCC-CHHHHHHHH
Confidence 4466778766678899999999986 555444433
No 209
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=23.52 E-value=3.8e+02 Score=21.29 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=17.8
Q ss_pred EEEEEEcCccceEEEEEeC
Q 026689 23 VILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~ 41 (235)
.+++||+|.-+...++++.
T Consensus 2 ii~sIDiGikNlA~~iie~ 20 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIEF 20 (143)
T ss_pred eEEEEecCCCceeEEEEEc
Confidence 5899999999999999997
No 210
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=23.32 E-value=2.2e+02 Score=27.89 Aligned_cols=67 Identities=12% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcccceeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc
Q 026689 71 DAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT 142 (235)
Q Consensus 71 ~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~~~~~ 142 (235)
+.+++++.+.++++++++++.+.+|..|.+ .|-.+.-. .+++.+++.|+. .+..-.|=-.+.+.|++
T Consensus 289 ~~ll~~i~~~i~~~L~~a~~~~~~id~ViL--vGGssriP--~V~~~l~~~f~~-~~~~~~npdeaVA~GAa 355 (599)
T TIGR01991 289 QPLVQKTLSICRRALRDAGLSVEEIKGVVL--VGGSTRMP--LVRRAVAELFGQ-EPLTDIDPDQVVALGAA 355 (599)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhhCCEEEE--ECCcCCCh--HHHHHHHHHhCC-CCCCCCCCcHHHHHHHH
No 211
>PHA02535 P terminase ATPase subunit; Provisional
Probab=22.30 E-value=7.7e+02 Score=24.37 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=50.9
Q ss_pred CcEEEEEEcCccc--eEEEEEe---CccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 026689 21 REVILGLDGGTTS--TVCICMP---VISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAV 95 (235)
Q Consensus 21 ~~~~LgiD~GgT~--t~~~l~d---~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i 95 (235)
.++++|.|.+.++ +-++|+. ..++ .-.++.+.+.. ..+.++..+.|. +++++. +|
T Consensus 402 ~~VwiG~D~sr~~D~t~lvVvapp~~~g~------kfrvler~~~~-----g~~f~~QA~~I~----~l~~ry-----nV 461 (581)
T PHA02535 402 REVWVGYDPAHTGDSAGLVVVAPPAVPGG------KFRVLERHQWR-----GLDFAEQAAEIR----KLTEKY-----NV 461 (581)
T ss_pred ceEEEeeCCCCCCCCeEEEEEecCcccCC------eEEEEEEEEEc-----CCCHHHHHHHHH----HHHHHc-----Cc
Confidence 4699999999887 4444553 2111 22344444432 245555444444 455443 45
Q ss_pred eeeEEeccCCCCccHHHHHHHHHHhhCCCCceEEEeCcHHHHH
Q 026689 96 RAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAAL 138 (235)
Q Consensus 96 ~~igigi~G~~~~~~~~~l~~~l~~~~~~~~~v~v~NDa~~a~ 138 (235)
..|+|=.+|+.. .+.+.+++.||...++...+.....+
T Consensus 462 ~~I~ID~TGiG~-----~v~e~v~~~~p~v~~i~ys~~~K~~L 499 (581)
T PHA02535 462 TYIGIDATGIGA-----GVYQLVKKFFPAAVAINYSPEVKTRL 499 (581)
T ss_pred eEEEEcCCCCCH-----HHHHHHHHhcCCeeEEEeCHHHHHHH
Confidence 667776666643 34555666676324666666665443
No 212
>CHL00094 dnaK heat shock protein 70
Probab=22.27 E-value=4.6e+02 Score=25.73 Aligned_cols=20 Identities=30% Similarity=0.238 Sum_probs=18.3
Q ss_pred cEEEEEEcCccceEEEEEeC
Q 026689 22 EVILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~ 41 (235)
+.+|.+|+||..+.+.|+..
T Consensus 187 ~~vlV~DlGgGT~DvSv~~~ 206 (621)
T CHL00094 187 ETILVFDLGGGTFDVSILEV 206 (621)
T ss_pred CEEEEEEcCCCeEEEEEEEE
Confidence 47899999999999999987
No 213
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=22.16 E-value=1.9e+02 Score=26.96 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=17.9
Q ss_pred EEEEEEcCccceEEEEEeC
Q 026689 23 VILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d~ 41 (235)
.+|.|..|.+++|+.++|.
T Consensus 2 ~iLviN~GSSSlKf~l~~~ 20 (396)
T COG0282 2 KILVINAGSSSLKFQLFDM 20 (396)
T ss_pred eEEEEecCcchheeeEecc
Confidence 5899999999999999997
No 214
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=22.16 E-value=4.6e+02 Score=25.94 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=0.0
Q ss_pred cEEEEEEcCccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHH
Q 026689 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLK 87 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~ 87 (235)
+.+|.+|+||..+.+.|+.. .+..+.-......+. .+-+.+-..|.+.+.+-+.+
T Consensus 194 ~~vlv~D~GggT~dvsv~~~---------~~~~~~v~a~~gd~~--lGG~d~D~~l~~~~~~~~~~ 248 (653)
T PTZ00009 194 KNVLIFDLGGGTFDVSLLTI---------EDGIFEVKATAGDTH--LGGEDFDNRLVEFCVQDFKR 248 (653)
T ss_pred CEEEEEECCCCeEEEEEEEE---------eCCeEEEEEecCCCC--CChHHHHHHHHHHHHHHHHH
No 215
>PRK12397 propionate kinase; Reviewed
Probab=22.05 E-value=1.4e+02 Score=27.90 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=19.4
Q ss_pred CCcEEEEEEcCccceEEEEEeC
Q 026689 20 GREVILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 20 m~~~~LgiD~GgT~t~~~l~d~ 41 (235)
|.+.+|.+..|.+++|+.+++.
T Consensus 1 ~~~~iLvlN~GSSSlKf~lf~~ 22 (404)
T PRK12397 1 MSYKIMAINAGSSSLKFQLLEM 22 (404)
T ss_pred CCCcEEEEECChHhheEEEEEC
Confidence 4455999999999999999996
No 216
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=21.99 E-value=4.3e+02 Score=21.32 Aligned_cols=19 Identities=32% Similarity=0.181 Sum_probs=16.7
Q ss_pred EEEEEEcCccc-----eEEEEEeC
Q 026689 23 VILGLDGGTTS-----TVCICMPV 41 (235)
Q Consensus 23 ~~LgiD~GgT~-----t~~~l~d~ 41 (235)
-+|++|+-+|+ |-+++++.
T Consensus 3 ~~LslD~STs~~~~~gTG~A~~~~ 26 (159)
T PF07066_consen 3 KVLSLDFSTSSKKGEGTGWAFFKG 26 (159)
T ss_pred eeEEEEEecccCCCCCceeEEecC
Confidence 58999999997 99999874
No 217
>PLN02666 5-oxoprolinase
Probab=21.78 E-value=70 Score=34.45 Aligned_cols=18 Identities=33% Similarity=0.349 Sum_probs=16.2
Q ss_pred EEEEEEcCccceEEEEEe
Q 026689 23 VILGLDGGTTSTVCICMP 40 (235)
Q Consensus 23 ~~LgiD~GgT~t~~~l~d 40 (235)
-+|.+|+|||+|++++++
T Consensus 315 ~~I~~DmGGTTtDv~li~ 332 (1275)
T PLN02666 315 PVIGFDMGGTSTDVSRYD 332 (1275)
T ss_pred CEEEEecCCceeeeEEEc
Confidence 379999999999999984
No 218
>PLN02377 3-ketoacyl-CoA synthase
Probab=21.62 E-value=2.3e+02 Score=27.36 Aligned_cols=37 Identities=8% Similarity=0.154 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCcccceeeEEeccCC
Q 026689 69 GEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGV 105 (235)
Q Consensus 69 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G~ 105 (235)
-.+++.+-+.+++++++++++++|++|..+.+..++.
T Consensus 168 ~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~ 204 (502)
T PLN02377 168 AREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLF 204 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCC
Confidence 3456677788889999999999999999886655554
No 219
>PLN02192 3-ketoacyl-CoA synthase
Probab=21.51 E-value=2.2e+02 Score=27.62 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCcccceeeEEecc
Q 026689 69 GEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (235)
Q Consensus 69 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~ 103 (235)
..++....+.+++++++++++++|++|.-+.+..+
T Consensus 172 ~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S 206 (511)
T PLN02192 172 ARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCS 206 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECC
Confidence 45567778888999999999999999988766644
No 220
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=21.14 E-value=4.4e+02 Score=21.14 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=28.3
Q ss_pred CccceEEEEEeCccCCCCCCCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHHHHHHHHcC
Q 026689 30 GTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSG 89 (235)
Q Consensus 30 GgT~t~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~ 89 (235)
=|+..-.+++|. .|++|.-...|++-.+..+ +-+++..-+.++++..|
T Consensus 105 PGSGSmlvimD~---------kGRiLtaslSPs~~iHk~~---ie~~v~~E~~~AL~RiG 152 (154)
T PF11576_consen 105 PGSGSMLVIMDS---------KGRILTASLSPSHVIHKKS---IEDAVKKEMIEALKRIG 152 (154)
T ss_dssp TTS-EEEEEEET---------TS-EEEEEEE--TTTS------HHHHHHHHHHHHHHTTT
T ss_pred CCCccEEEEEcC---------CCcEEeeccCchhhhcccc---HHHHHHHHHHHHHHHhC
Confidence 467777888998 9999998887766544333 44455666666666544
No 221
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=21.10 E-value=1.1e+02 Score=28.96 Aligned_cols=31 Identities=6% Similarity=0.067 Sum_probs=22.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEe
Q 026689 67 SVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (235)
Q Consensus 67 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igig 101 (235)
++|++.+++.+.++++++..+ +.+|.+|++.
T Consensus 32 ~~d~~~~~~~i~~~l~~~~~~----~~~I~~Igis 62 (471)
T PRK10640 32 TWDVDSLESAIRLGLNKVCEE----GIRIDSIGID 62 (471)
T ss_pred EECHHHHHHHHHHHHHHHhhc----CCCccEEEEc
Confidence 578888888888888777542 3468886554
No 222
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=20.41 E-value=2.8e+02 Score=26.66 Aligned_cols=20 Identities=25% Similarity=-0.057 Sum_probs=17.6
Q ss_pred cEEEEEEcCccceEEEEEeC
Q 026689 22 EVILGLDGGTTSTVCICMPV 41 (235)
Q Consensus 22 ~~~LgiD~GgT~t~~~l~d~ 41 (235)
.-.+.+|+||-+|-.++.+.
T Consensus 129 ~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 129 GDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred CCEEEEEecCCeEEEEEecC
Confidence 35799999999999999875
No 223
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=20.37 E-value=1.9e+02 Score=25.22 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=23.8
Q ss_pred EecCCcEEEeCCCCccccccchHHHHHHHH
Q 026689 162 FTEDGRDARAAGAGPILGDWGSGYGIAAQA 191 (235)
Q Consensus 162 ~~~~G~~~~~Gg~G~llgd~gSg~~ig~~a 191 (235)
+..+|+ |.||..||+ ....|+.++.+++
T Consensus 170 v~~~g~-c~cG~~Gcl-E~~as~~al~~~~ 197 (314)
T COG1940 170 VDPDGE-CGCGRRGCL-ETYASGRAILRRA 197 (314)
T ss_pred ECCCCc-cCCCCCCch-HHhccHHHHHHHH
Confidence 445667 899999995 8999999999987
No 224
>PRK00768 nadE NAD synthetase; Reviewed
Probab=20.10 E-value=1.9e+02 Score=25.51 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCcccceeeEEeccCCCC
Q 026689 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNH 107 (235)
Q Consensus 68 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~igigi~G~~~ 107 (235)
.++++..+.+.+.+++.+++++. .++.+|++|-.+
T Consensus 16 ~~~~~~~~~i~~~L~~~l~~~g~-----~g~VlGlSGGID 50 (268)
T PRK00768 16 IDPEEEIRRRVDFLKDYLKKSGL-----KSLVLGISGGQD 50 (268)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCC-----CeEEEECCCCHH
Confidence 57888889999999998888753 466677777643
Done!