Query 026690
Match_columns 235
No_of_seqs 233 out of 1634
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 19:42:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 5E-19 1.7E-23 131.6 7.6 80 153-235 8-87 (91)
2 1x4j_A Ring finger protein 38; 99.7 1.7E-18 6E-23 123.7 3.7 67 165-235 4-70 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.7 3.1E-17 1E-21 110.1 4.4 51 185-235 3-53 (55)
4 2kiz_A E3 ubiquitin-protein li 99.6 1.9E-16 6.3E-21 111.1 5.7 51 184-235 11-61 (69)
5 2ep4_A Ring finger protein 24; 99.6 2E-16 6.9E-21 112.4 5.6 50 185-235 13-62 (74)
6 2ecl_A Ring-box protein 2; RNF 99.6 2.8E-16 9.7E-21 114.4 4.6 49 187-235 15-74 (81)
7 2ect_A Ring finger protein 126 99.6 4.4E-16 1.5E-20 111.7 4.9 51 184-235 12-62 (78)
8 2ecm_A Ring finger and CHY zin 99.5 3.3E-15 1.1E-19 99.9 4.6 49 186-235 4-53 (55)
9 2ea6_A Ring finger protein 4; 99.5 6.8E-15 2.3E-19 102.4 4.9 50 185-235 13-66 (69)
10 3dpl_R Ring-box protein 1; ubi 99.5 4E-15 1.4E-19 114.0 3.8 48 186-234 36-98 (106)
11 3ng2_A RNF4, snurf, ring finge 99.5 5.9E-15 2E-19 103.6 3.4 50 185-235 8-61 (71)
12 1v87_A Deltex protein 2; ring- 99.5 1.3E-14 4.4E-19 111.2 4.7 48 187-235 25-92 (114)
13 2xeu_A Ring finger protein 4; 99.5 9.2E-15 3.2E-19 100.3 3.2 49 186-235 2-54 (64)
14 2d8t_A Dactylidin, ring finger 99.5 2.1E-14 7.1E-19 101.4 4.4 47 185-235 13-59 (71)
15 4a0k_B E3 ubiquitin-protein li 99.5 2.5E-15 8.4E-20 117.2 -1.0 48 186-234 47-109 (117)
16 2d8s_A Cellular modulator of i 99.5 3.3E-14 1.1E-18 103.6 4.4 49 185-235 13-68 (80)
17 2djb_A Polycomb group ring fin 99.5 5E-14 1.7E-18 99.7 5.1 48 184-235 12-60 (72)
18 1chc_A Equine herpes virus-1 r 99.5 3.8E-14 1.3E-18 98.8 4.3 47 186-235 4-50 (68)
19 2ecn_A Ring finger protein 141 99.4 1.6E-14 5.6E-19 101.3 1.9 46 185-235 13-58 (70)
20 2ct2_A Tripartite motif protei 99.4 9.1E-14 3.1E-18 101.2 5.4 51 184-235 12-66 (88)
21 2csy_A Zinc finger protein 183 99.4 1.1E-13 3.9E-18 99.9 5.7 48 184-235 12-59 (81)
22 2ysl_A Tripartite motif-contai 99.4 2.7E-13 9.2E-18 95.6 5.9 48 184-235 17-67 (73)
23 2yur_A Retinoblastoma-binding 99.4 2.1E-13 7.3E-18 97.1 4.7 48 184-234 12-61 (74)
24 2ecy_A TNF receptor-associated 99.4 2.7E-13 9.3E-18 94.2 5.0 47 185-235 13-60 (66)
25 4ayc_A E3 ubiquitin-protein li 99.4 9.6E-14 3.3E-18 110.3 3.0 45 187-235 53-97 (138)
26 1t1h_A Gspef-atpub14, armadill 99.3 7.6E-13 2.6E-17 94.6 4.8 47 185-235 6-53 (78)
27 2ecw_A Tripartite motif-contai 99.3 1.2E-12 4.2E-17 94.2 5.5 47 185-235 17-69 (85)
28 2ysj_A Tripartite motif-contai 99.3 1.5E-12 5.2E-17 89.4 5.6 44 184-231 17-63 (63)
29 3lrq_A E3 ubiquitin-protein li 99.3 5.5E-13 1.9E-17 100.4 3.2 46 186-235 21-68 (100)
30 2egp_A Tripartite motif-contai 99.3 3.8E-13 1.3E-17 96.1 2.1 48 184-235 9-63 (79)
31 4ap4_A E3 ubiquitin ligase RNF 99.3 7E-13 2.4E-17 102.9 3.5 49 186-235 6-58 (133)
32 2ecv_A Tripartite motif-contai 99.3 1.5E-12 5E-17 93.8 4.9 47 185-235 17-69 (85)
33 2y43_A E3 ubiquitin-protein li 99.3 9.5E-13 3.3E-17 98.5 3.5 46 187-235 22-67 (99)
34 3ztg_A E3 ubiquitin-protein li 99.3 2.1E-12 7.3E-17 95.1 5.1 49 184-235 10-60 (92)
35 2ecj_A Tripartite motif-contai 99.3 2.4E-12 8.3E-17 86.6 4.7 44 184-231 12-58 (58)
36 2ckl_A Polycomb group ring fin 99.3 1.9E-12 6.6E-17 98.3 3.9 46 186-235 14-60 (108)
37 1g25_A CDK-activating kinase a 99.3 3.3E-12 1.1E-16 88.4 4.4 48 187-235 3-53 (65)
38 2ct0_A Non-SMC element 1 homol 99.3 4.4E-12 1.5E-16 91.1 5.0 47 185-234 13-61 (74)
39 3fl2_A E3 ubiquitin-protein li 99.3 2.1E-12 7.1E-17 100.5 3.4 45 187-235 52-97 (124)
40 2ckl_B Ubiquitin ligase protei 99.2 8.9E-12 3E-16 101.5 6.8 45 187-235 54-100 (165)
41 4ap4_A E3 ubiquitin ligase RNF 99.2 3.6E-12 1.2E-16 98.9 3.9 50 185-235 70-123 (133)
42 1jm7_A BRCA1, breast cancer ty 99.2 1E-11 3.5E-16 94.2 3.9 45 187-235 21-68 (112)
43 3hct_A TNF receptor-associated 99.2 9.9E-12 3.4E-16 96.0 3.8 48 184-235 15-63 (118)
44 3l11_A E3 ubiquitin-protein li 99.2 2.8E-12 9.5E-17 98.4 0.3 46 186-235 14-60 (115)
45 2kr4_A Ubiquitin conjugation f 99.2 3.3E-11 1.1E-15 88.3 5.4 47 185-235 12-58 (85)
46 2kre_A Ubiquitin conjugation f 99.1 2.5E-11 8.4E-16 91.8 4.6 47 185-235 27-73 (100)
47 1z6u_A NP95-like ring finger p 99.1 2.4E-11 8.4E-16 98.1 4.5 45 187-235 78-123 (150)
48 1rmd_A RAG1; V(D)J recombinati 99.1 1.6E-11 5.5E-16 94.2 3.1 45 187-235 23-68 (116)
49 2vje_A E3 ubiquitin-protein li 99.1 2.6E-11 8.7E-16 84.3 3.1 46 186-235 7-55 (64)
50 1wgm_A Ubiquitin conjugation f 99.1 7.7E-11 2.6E-15 88.7 5.4 47 185-235 20-67 (98)
51 1bor_A Transcription factor PM 99.1 2.7E-11 9.2E-16 81.8 1.9 44 185-235 4-47 (56)
52 2vje_B MDM4 protein; proto-onc 99.1 5.3E-11 1.8E-15 82.4 2.9 46 186-235 6-54 (63)
53 1e4u_A Transcriptional repress 99.1 1.4E-10 4.9E-15 83.8 5.2 50 185-235 9-60 (78)
54 2y1n_A E3 ubiquitin-protein li 99.0 9.5E-11 3.2E-15 107.9 4.8 45 187-235 332-377 (389)
55 3knv_A TNF receptor-associated 99.0 5.4E-11 1.9E-15 95.1 2.4 47 184-234 28-75 (141)
56 1jm7_B BARD1, BRCA1-associated 99.0 6.2E-11 2.1E-15 91.3 1.0 43 187-235 22-65 (117)
57 3k1l_B Fancl; UBC, ring, RWD, 99.0 1.1E-10 3.9E-15 105.5 2.5 51 185-235 306-371 (381)
58 4ic3_A E3 ubiquitin-protein li 99.0 1.3E-10 4.3E-15 82.8 1.4 41 187-235 24-65 (74)
59 3hcs_A TNF receptor-associated 98.9 5.7E-10 2E-14 91.0 3.8 48 184-235 15-63 (170)
60 2c2l_A CHIP, carboxy terminus 98.9 8.9E-10 3.1E-14 95.3 5.2 47 185-235 206-253 (281)
61 2yu4_A E3 SUMO-protein ligase 98.9 7.3E-10 2.5E-14 82.4 3.5 46 186-234 6-59 (94)
62 1vyx_A ORF K3, K3RING; zinc-bi 98.9 1.3E-09 4.4E-14 75.0 3.8 46 186-235 5-57 (60)
63 2ea5_A Cell growth regulator w 98.8 4.4E-09 1.5E-13 73.8 4.7 43 185-235 13-56 (68)
64 2ecg_A Baculoviral IAP repeat- 98.8 2.6E-09 8.8E-14 76.0 2.9 41 187-235 25-66 (75)
65 1wim_A KIAA0161 protein; ring 98.7 3.9E-09 1.3E-13 78.1 3.2 48 186-234 4-61 (94)
66 2f42_A STIP1 homology and U-bo 98.7 6.5E-09 2.2E-13 86.4 4.5 48 184-235 103-151 (179)
67 2yho_A E3 ubiquitin-protein li 98.7 3.8E-09 1.3E-13 76.3 0.9 41 187-235 18-59 (79)
68 2bay_A PRE-mRNA splicing facto 98.6 2.2E-08 7.6E-13 68.9 3.1 45 188-235 4-48 (61)
69 3t6p_A Baculoviral IAP repeat- 98.5 2.1E-08 7.2E-13 91.1 1.7 42 186-235 294-336 (345)
70 3htk_C E3 SUMO-protein ligase 98.5 5.4E-08 1.9E-12 85.1 3.1 46 186-234 180-229 (267)
71 3vk6_A E3 ubiquitin-protein li 98.3 4.4E-07 1.5E-11 68.1 4.0 44 189-235 3-47 (101)
72 3nw0_A Non-structural maintena 98.1 2.4E-06 8.2E-11 73.8 4.6 45 187-234 180-226 (238)
73 2lri_C Autoimmune regulator; Z 95.7 0.0073 2.5E-07 41.8 3.3 45 186-234 11-59 (66)
74 2jun_A Midline-1; B-BOX, TRIM, 95.7 0.0075 2.6E-07 44.2 3.3 36 186-222 2-38 (101)
75 2ko5_A Ring finger protein Z; 95.6 0.0039 1.3E-07 46.1 1.6 43 188-235 29-71 (99)
76 1wil_A KIAA1045 protein; ring 94.7 0.035 1.2E-06 40.2 4.3 36 184-221 12-47 (89)
77 1we9_A PHD finger family prote 94.7 0.0057 1.9E-07 41.6 0.1 49 185-233 4-57 (64)
78 2l5u_A Chromodomain-helicase-D 94.3 0.025 8.6E-07 38.2 2.7 45 185-233 9-57 (61)
79 1f62_A Transcription factor WS 93.0 0.046 1.6E-06 35.3 2.0 45 189-234 2-50 (51)
80 1mm2_A MI2-beta; PHD, zinc fin 92.9 0.024 8.4E-07 38.3 0.6 45 186-234 8-56 (61)
81 1wep_A PHF8; structural genomi 91.5 0.17 5.9E-06 35.6 3.7 48 186-234 11-63 (79)
82 2k16_A Transcription initiatio 91.3 0.059 2E-06 37.6 1.0 48 185-233 16-67 (75)
83 2yql_A PHD finger protein 21A; 91.2 0.022 7.6E-07 37.7 -1.2 45 185-233 7-55 (56)
84 2lv9_A Histone-lysine N-methyl 90.8 0.09 3.1E-06 38.8 1.7 46 186-233 27-75 (98)
85 2kgg_A Histone demethylase jar 90.7 0.085 2.9E-06 34.3 1.3 44 189-232 4-52 (52)
86 2vpb_A Hpygo1, pygopus homolog 90.6 0.19 6.5E-06 34.4 3.1 49 185-233 6-65 (65)
87 2ysm_A Myeloid/lymphoid or mix 89.9 0.095 3.3E-06 39.2 1.1 47 185-232 5-55 (111)
88 3o70_A PHD finger protein 13; 89.4 0.074 2.5E-06 36.8 0.2 51 182-234 14-67 (68)
89 2lbm_A Transcriptional regulat 89.0 0.55 1.9E-05 37.1 5.0 46 184-233 60-116 (142)
90 1xwh_A Autoimmune regulator; P 88.8 0.045 1.5E-06 37.5 -1.3 44 186-233 7-54 (66)
91 1fp0_A KAP-1 corepressor; PHD 88.2 0.19 6.4E-06 36.6 1.7 45 185-233 23-71 (88)
92 2puy_A PHD finger protein 21A; 88.0 0.069 2.4E-06 35.7 -0.7 44 186-233 4-51 (60)
93 2e6r_A Jumonji/ARID domain-con 87.9 0.064 2.2E-06 39.2 -1.0 48 185-233 14-65 (92)
94 3m62_A Ubiquitin conjugation f 87.6 0.47 1.6E-05 48.1 4.7 48 184-235 888-936 (968)
95 3v43_A Histone acetyltransfera 87.5 0.16 5.6E-06 38.2 1.0 45 189-233 63-111 (112)
96 1wen_A Inhibitor of growth fam 87.3 0.44 1.5E-05 33.1 3.1 44 186-234 15-65 (71)
97 1wee_A PHD finger family prote 86.2 0.11 3.7E-06 36.0 -0.6 47 186-233 15-65 (72)
98 3v43_A Histone acetyltransfera 86.0 1.1 3.9E-05 33.4 5.0 33 187-219 5-42 (112)
99 1weu_A Inhibitor of growth fam 85.8 0.48 1.6E-05 34.6 2.7 44 186-234 35-85 (91)
100 3ql9_A Transcriptional regulat 85.7 0.97 3.3E-05 35.1 4.6 46 184-233 54-110 (129)
101 1wem_A Death associated transc 85.5 0.33 1.1E-05 33.8 1.7 44 188-233 17-69 (76)
102 1wew_A DNA-binding family prot 85.4 0.23 7.8E-06 35.0 0.8 47 186-233 15-71 (78)
103 2ku3_A Bromodomain-containing 84.9 0.28 9.7E-06 34.1 1.1 49 185-233 14-65 (71)
104 2l43_A N-teminal domain from h 84.8 0.28 9.5E-06 35.5 1.0 49 185-233 23-74 (88)
105 2xb1_A Pygopus homolog 2, B-ce 84.8 0.52 1.8E-05 35.1 2.6 47 187-233 3-60 (105)
106 2yt5_A Metal-response element- 83.0 0.62 2.1E-05 31.3 2.1 49 185-233 4-60 (66)
107 2rsd_A E3 SUMO-protein ligase 82.8 0.12 4E-06 35.5 -1.6 47 186-233 9-64 (68)
108 3shb_A E3 ubiquitin-protein li 82.6 0.18 6.3E-06 35.6 -0.7 45 189-234 28-77 (77)
109 2e6s_A E3 ubiquitin-protein li 82.5 0.27 9.1E-06 34.8 0.1 45 189-234 28-77 (77)
110 1wev_A Riken cDNA 1110020M19; 81.6 0.11 3.7E-06 37.7 -2.3 47 187-233 16-71 (88)
111 3asl_A E3 ubiquitin-protein li 81.5 0.3 1E-05 33.8 0.0 45 189-234 20-69 (70)
112 2cs3_A Protein C14ORF4, MY039 81.1 1.8 6.1E-05 31.0 3.9 40 185-224 13-52 (93)
113 2kwj_A Zinc finger protein DPF 81.0 0.55 1.9E-05 35.3 1.4 34 188-221 2-41 (114)
114 2jne_A Hypothetical protein YF 80.2 0.57 2E-05 34.7 1.2 39 188-235 33-71 (101)
115 3c6w_A P28ING5, inhibitor of g 79.4 0.45 1.5E-05 31.7 0.4 43 186-233 8-57 (59)
116 3ask_A E3 ubiquitin-protein li 78.0 0.52 1.8E-05 40.0 0.5 45 189-234 176-225 (226)
117 1z60_A TFIIH basal transcripti 76.7 1.5 5E-05 29.5 2.3 43 188-231 16-58 (59)
118 4gne_A Histone-lysine N-methyl 75.2 1.3 4.5E-05 33.2 2.0 43 185-232 13-60 (107)
119 2jrp_A Putative cytoplasmic pr 74.1 1.5 5.3E-05 31.3 2.0 39 188-235 3-41 (81)
120 2dj7_A Actin-binding LIM prote 74.0 1.8 6.3E-05 30.0 2.4 37 187-234 15-51 (80)
121 2yw8_A RUN and FYVE domain-con 73.9 2.3 7.9E-05 29.9 2.9 36 186-221 18-53 (82)
122 2vnf_A ING 4, P29ING4, inhibit 73.0 0.58 2E-05 31.2 -0.5 43 186-233 9-58 (60)
123 1x4k_A Skeletal muscle LIM-pro 72.7 1.5 5E-05 29.3 1.6 28 189-218 7-34 (72)
124 1z2q_A LM5-1; membrane protein 72.4 2.7 9.1E-05 29.7 3.0 36 186-221 20-55 (84)
125 2g6q_A Inhibitor of growth pro 72.4 0.66 2.3E-05 31.3 -0.3 43 186-233 10-59 (62)
126 1x61_A Thyroid receptor intera 72.3 1.9 6.5E-05 28.8 2.1 36 188-226 34-69 (72)
127 1g47_A Pinch protein; LIM doma 72.2 2 6.9E-05 29.0 2.2 31 187-219 11-41 (77)
128 1wfk_A Zinc finger, FYVE domai 71.8 2.7 9.4E-05 30.1 2.9 36 185-220 7-42 (88)
129 1zbd_B Rabphilin-3A; G protein 71.7 2.1 7.1E-05 33.3 2.4 34 186-219 54-88 (134)
130 1weo_A Cellulose synthase, cat 71.6 8.4 0.00029 28.0 5.4 47 188-234 17-67 (93)
131 2cu8_A Cysteine-rich protein 2 71.6 1.7 5.8E-05 29.5 1.7 29 188-219 10-38 (76)
132 3kv5_D JMJC domain-containing 71.2 0.9 3.1E-05 42.7 0.2 45 188-233 38-87 (488)
133 1vfy_A Phosphatidylinositol-3- 71.1 3 0.0001 28.7 2.9 33 188-220 12-44 (73)
134 1wyh_A SLIM 2, skeletal muscle 71.0 1.5 5.1E-05 29.3 1.3 28 189-218 7-34 (72)
135 3t7l_A Zinc finger FYVE domain 70.7 2.3 8E-05 30.5 2.3 36 187-222 20-55 (90)
136 2ysm_A Myeloid/lymphoid or mix 69.6 0.6 2E-05 34.7 -1.1 44 189-233 56-103 (111)
137 1x4l_A Skeletal muscle LIM-pro 69.5 2.4 8.2E-05 28.3 2.1 29 188-218 6-36 (72)
138 1x63_A Skeletal muscle LIM-pro 68.9 2.1 7.3E-05 29.3 1.7 29 188-218 16-44 (82)
139 1iml_A CRIP, cysteine rich int 68.8 1.2 4.2E-05 30.3 0.4 42 187-233 27-69 (76)
140 1dvp_A HRS, hepatocyte growth 68.6 2.4 8.3E-05 35.2 2.3 35 187-221 161-195 (220)
141 1joc_A EEA1, early endosomal a 68.5 2.7 9.4E-05 32.1 2.4 35 187-221 69-103 (125)
142 3f6q_B LIM and senescent cell 68.2 3.4 0.00012 27.2 2.6 30 187-218 11-40 (72)
143 1x4u_A Zinc finger, FYVE domai 68.2 3.6 0.00012 29.0 2.8 35 186-220 13-47 (84)
144 3i2d_A E3 SUMO-protein ligase 67.4 5.3 0.00018 36.2 4.5 44 188-234 250-297 (371)
145 3zyq_A Hepatocyte growth facto 66.9 2.8 9.6E-05 35.1 2.4 35 187-221 164-198 (226)
146 3kqi_A GRC5, PHD finger protei 66.9 1.5 5.2E-05 30.3 0.6 45 189-233 11-60 (75)
147 2co8_A NEDD9 interacting prote 66.2 3.5 0.00012 28.5 2.4 31 186-219 14-44 (82)
148 4fo9_A E3 SUMO-protein ligase 65.6 6.1 0.00021 35.7 4.5 44 188-234 216-263 (360)
149 3o7a_A PHD finger protein 13 v 64.5 0.91 3.1E-05 29.2 -0.9 43 191-234 7-52 (52)
150 2kwj_A Zinc finger protein DPF 63.5 0.73 2.5E-05 34.6 -1.7 44 189-233 60-107 (114)
151 1y02_A CARP2, FYVE-ring finger 63.4 0.95 3.3E-05 34.7 -1.1 45 187-231 19-63 (120)
152 2d8v_A Zinc finger FYVE domain 63.3 4.9 0.00017 27.5 2.6 33 184-221 5-38 (67)
153 2zet_C Melanophilin; complex, 62.5 4.2 0.00015 32.2 2.5 33 186-218 67-100 (153)
154 1x68_A FHL5 protein; four-and- 62.3 3.2 0.00011 28.1 1.6 30 188-219 6-37 (76)
155 2jmi_A Protein YNG1, ING1 homo 61.2 1.8 6.2E-05 31.4 0.1 44 185-233 24-75 (90)
156 2gmg_A Hypothetical protein PF 59.9 1.7 5.9E-05 32.5 -0.2 22 208-234 72-93 (105)
157 2cor_A Pinch protein; LIM doma 58.9 5.4 0.00019 27.3 2.3 27 188-218 16-42 (79)
158 2d8x_A Protein pinch; LIM doma 58.1 4.8 0.00017 26.6 1.9 11 210-220 51-61 (70)
159 1a7i_A QCRP2 (LIM1); LIM domai 58.0 1.9 6.4E-05 29.7 -0.3 28 188-218 8-35 (81)
160 3a1b_A DNA (cytosine-5)-methyl 57.5 9.4 0.00032 30.5 3.7 38 182-223 74-113 (159)
161 2lbg_A Major prion protein; co 56.2 6.2 0.00021 22.1 1.7 14 52-65 9-22 (27)
162 2ehe_A Four and A half LIM dom 55.9 4.2 0.00014 27.8 1.3 29 188-218 16-44 (82)
163 2cup_A Skeletal muscle LIM-pro 55.0 5.8 0.0002 28.1 2.0 43 188-235 34-76 (101)
164 2l3k_A Rhombotin-2, linker, LI 54.0 4.2 0.00014 30.3 1.1 34 188-223 37-70 (123)
165 2pv0_B DNA (cytosine-5)-methyl 53.6 14 0.00049 33.5 4.7 45 184-232 90-146 (386)
166 3mpx_A FYVE, rhogef and PH dom 53.4 2.8 9.5E-05 37.8 0.0 36 187-222 375-410 (434)
167 1zfo_A LAsp-1; LIM domain, zin 52.9 6.3 0.00022 22.4 1.5 28 188-218 4-31 (31)
168 2csz_A Synaptotagmin-like prot 52.9 12 0.0004 26.3 3.2 33 185-217 23-56 (76)
169 3ldt_A Outer membrane protein, 51.9 3.1 0.00011 33.1 0.1 14 52-65 4-17 (169)
170 3pwf_A Rubrerythrin; non heme 51.8 7.1 0.00024 31.3 2.2 24 203-233 138-161 (170)
171 1x62_A C-terminal LIM domain p 51.5 8.3 0.00028 26.2 2.3 29 187-219 15-43 (79)
172 3arc_X Photosystem II PSBX pro 51.4 7 0.00024 23.9 1.6 24 51-74 15-38 (39)
173 2egq_A FHL1 protein; LIM domai 51.1 5.6 0.00019 26.7 1.3 30 188-219 16-48 (77)
174 2jmo_A Parkin; IBR, E3 ligase, 50.5 3 0.0001 29.2 -0.2 40 188-229 26-74 (80)
175 2dar_A PDZ and LIM domain prot 50.2 7.4 0.00025 27.2 1.9 29 187-219 25-53 (90)
176 2d8y_A Eplin protein; LIM doma 50.2 6.9 0.00023 27.4 1.7 26 189-217 17-42 (91)
177 4bbq_A Lysine-specific demethy 49.5 1.5 5.2E-05 32.6 -2.0 45 189-233 61-113 (117)
178 1m3v_A FLIN4, fusion of the LI 48.3 14 0.00047 27.3 3.2 46 188-235 33-79 (122)
179 3bz1_X Photosystem II PSBX pro 48.0 10 0.00036 24.4 2.1 24 51-74 25-48 (50)
180 1nyp_A Pinch protein; LIM doma 46.8 4.7 0.00016 26.3 0.3 27 188-218 6-32 (66)
181 1yuz_A Nigerythrin; rubrythrin 46.6 8.9 0.0003 31.5 2.1 25 203-234 171-195 (202)
182 2cur_A Skeletal muscle LIM-pro 46.5 10 0.00035 24.8 2.0 31 188-221 32-62 (69)
183 3mjh_B Early endosome antigen 45.5 4.1 0.00014 24.2 -0.1 14 186-199 4-17 (34)
184 2ct7_A Ring finger protein 31; 45.4 3.5 0.00012 29.2 -0.6 36 190-225 28-65 (86)
185 2d8z_A Four and A half LIM dom 45.3 9.3 0.00032 25.1 1.7 11 188-198 32-42 (70)
186 2l4z_A DNA endonuclease RBBP8, 44.7 6.3 0.00022 29.6 0.8 37 187-234 61-97 (123)
187 3ldt_A Outer membrane protein, 44.2 3.6 0.00012 32.7 -0.7 18 50-67 6-23 (169)
188 1x64_A Alpha-actinin-2 associa 43.8 15 0.0005 25.5 2.6 29 187-219 25-53 (89)
189 1v6g_A Actin binding LIM prote 43.6 9.3 0.00032 26.0 1.5 26 189-218 17-42 (81)
190 2rgt_A Fusion of LIM/homeobox 43.6 12 0.00039 29.4 2.2 36 188-224 94-129 (169)
191 1wd2_A Ariadne-1 protein homol 43.5 4.8 0.00016 26.7 -0.1 37 188-224 7-47 (60)
192 2kpi_A Uncharacterized protein 43.2 11 0.00037 24.7 1.7 28 186-213 9-38 (56)
193 1wig_A KIAA1808 protein; LIM d 43.0 9.7 0.00033 25.5 1.5 32 188-221 32-63 (73)
194 1x6a_A LIMK-2, LIM domain kina 43.0 7.7 0.00026 26.3 1.0 35 188-223 42-76 (81)
195 2lq6_A Bromodomain-containing 41.5 19 0.00066 25.5 2.9 33 187-220 17-50 (87)
196 2jtn_A LIM domain-binding prot 41.4 11 0.00039 29.8 1.9 10 189-198 89-98 (182)
197 2xjy_A Rhombotin-2; oncoprotei 40.9 16 0.00055 27.0 2.6 27 189-217 68-94 (131)
198 4ezc_A UREA transporter 1; mem 40.0 31 0.0011 31.3 4.7 33 37-69 242-274 (384)
199 2o35_A Hypothetical protein DU 39.3 12 0.0004 27.8 1.4 12 212-223 42-53 (105)
200 2lcq_A Putative toxin VAPC6; P 39.0 7.2 0.00024 30.6 0.3 8 227-234 150-157 (165)
201 3fyb_A Protein of unknown func 38.9 12 0.00041 27.6 1.4 12 212-223 41-52 (104)
202 1rut_X Flinc4, fusion protein 38.9 18 0.0006 28.9 2.7 28 189-218 71-98 (188)
203 2iyb_E Testin, TESS, TES; LIM 38.5 9.6 0.00033 24.8 0.8 28 189-218 4-33 (65)
204 1lko_A Rubrerythrin all-iron(I 37.5 11 0.00038 30.6 1.2 8 227-234 173-180 (191)
205 2dlo_A Thyroid receptor-intera 36.9 12 0.00042 25.3 1.2 10 189-198 43-52 (81)
206 1j2o_A FLIN2, fusion of rhombo 35.1 15 0.0005 26.9 1.5 36 188-225 31-67 (114)
207 1b8t_A Protein (CRP1); LIM dom 34.8 12 0.0004 30.0 1.0 27 188-217 116-142 (192)
208 2cuq_A Four and A half LIM dom 34.6 15 0.0005 24.7 1.3 10 188-197 42-51 (80)
209 1m3v_A FLIN4, fusion of the LI 32.5 40 0.0014 24.7 3.6 36 188-234 6-41 (122)
210 2xjy_A Rhombotin-2; oncoprotei 30.8 31 0.0011 25.4 2.7 46 187-234 29-75 (131)
211 1x3h_A Leupaxin; paxillin fami 30.6 18 0.00061 24.3 1.2 10 189-198 43-52 (80)
212 2pk7_A Uncharacterized protein 29.1 27 0.00092 23.8 1.9 27 187-213 8-36 (69)
213 2jvx_A NF-kappa-B essential mo 29.0 13 0.00044 21.0 0.2 8 226-233 4-11 (28)
214 6rxn_A Rubredoxin; electron tr 28.7 21 0.00071 22.5 1.1 7 227-233 32-38 (46)
215 1rut_X Flinc4, fusion protein 28.4 23 0.00079 28.1 1.7 46 187-234 32-78 (188)
216 2das_A Zinc finger MYM-type pr 28.4 55 0.0019 21.9 3.2 36 187-222 20-56 (62)
217 2xqn_T Testin, TESS; metal-bin 25.3 25 0.00084 25.8 1.2 29 188-218 64-94 (126)
218 2a20_A Regulating synaptic mem 25.0 51 0.0018 22.0 2.6 49 184-233 6-59 (62)
219 3k3f_A UREA transporter; membr 24.2 91 0.0031 27.6 4.9 27 43-69 211-237 (340)
220 1tpx_A Prion protein, major pr 23.8 7 0.00024 29.8 -2.1 14 53-66 5-18 (121)
221 2jny_A Uncharacterized BCR; st 23.3 33 0.0011 23.2 1.5 28 186-213 9-38 (67)
222 2ek0_A Stage V sporulation pro 21.7 28 0.00096 25.1 0.9 38 58-95 14-53 (90)
223 2jr6_A UPF0434 protein NMA0874 21.4 38 0.0013 22.9 1.5 28 186-213 7-36 (68)
224 4rxn_A Rubredoxin; electron tr 21.4 37 0.0013 22.1 1.3 10 189-198 5-14 (54)
225 2akl_A PHNA-like protein PA012 20.9 49 0.0017 25.6 2.1 28 187-214 27-55 (138)
226 1l8d_A DNA double-strand break 20.6 21 0.00072 25.9 0.0 8 188-195 48-55 (112)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.77 E-value=5e-19 Score=131.59 Aligned_cols=80 Identities=34% Similarity=0.819 Sum_probs=68.8
Q ss_pred ccccCCCCCCCHHHHhcCCceeeccCCCcCCCCCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCcc
Q 026690 153 IFDTGLSKGLTGESVDKIPKITITDKNNIDASGERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCR 232 (235)
Q Consensus 153 ~~~~~~~~gls~~~i~~lp~~~~~~~~~~~~~~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR 232 (235)
.......++++++.++++|...++.... ..+++..|+||+++|..++.++.+| |+|.||..||++|++++.+||+||
T Consensus 8 ~~~~~~~~~~s~~~i~~lp~~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr 84 (91)
T 2l0b_A 8 HSHMVANPPASKESIDALPEILVTEDHG--AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84 (91)
T ss_dssp SCCSSCCCCCCHHHHHTSCEEECCTTCS--SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTC
T ss_pred CCCCcCCCCCCHHHHHhCCCeeeccccc--ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcC
Confidence 3445678899999999999998876432 2345678999999999999999999 999999999999999999999999
Q ss_pred CCC
Q 026690 233 RDL 235 (235)
Q Consensus 233 ~~v 235 (235)
+++
T Consensus 85 ~~~ 87 (91)
T 2l0b_A 85 CMF 87 (91)
T ss_dssp CBS
T ss_pred ccC
Confidence 865
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-18 Score=123.71 Aligned_cols=67 Identities=39% Similarity=0.895 Sum_probs=56.9
Q ss_pred HHHhcCCceeeccCCCcCCCCCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 165 ESVDKIPKITITDKNNIDASGERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 165 ~~i~~lp~~~~~~~~~~~~~~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
+.++++|..+++... ...++..|+||+++|..++.++.+| |+|.||..||++|++++.+||+||+++
T Consensus 4 ~~i~~lp~~~~~~~~---~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 70 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNN---HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADS 70 (75)
T ss_dssp CCCSSCCCEEBCSSS---CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCC
T ss_pred hhHhhCCcEEecCcc---ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcC
Confidence 456678888876542 2345578999999999999999999 999999999999999999999999875
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.67 E-value=3.1e-17 Score=110.06 Aligned_cols=51 Identities=49% Similarity=1.107 Sum_probs=46.8
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
+++.+|+||++++..++.+..+|.|+|.||..||.+|++++.+||+||+++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 345789999999999999999988999999999999999999999999875
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=1.9e-16 Score=111.10 Aligned_cols=51 Identities=41% Similarity=1.094 Sum_probs=46.3
Q ss_pred CCCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 184 SGERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
..++..|+||++.|..++.++.+| |+|.||..||.+|++++.+||+||.++
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDI 61 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBS
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccc
Confidence 344578999999999888899999 999999999999999999999999864
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2e-16 Score=112.37 Aligned_cols=50 Identities=38% Similarity=0.858 Sum_probs=46.0
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
.++..|+||+++|..++.+..+| |+|.||..||.+|++++.+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 44578999999999988898999 999999999999999999999999875
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-16 Score=114.38 Aligned_cols=49 Identities=27% Similarity=0.727 Sum_probs=40.6
Q ss_pred CccCcccccccc-----------CCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 187 RVSCSVCLQDFQ-----------LGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 187 ~~~C~ICle~f~-----------~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
+..|+||+++|. .++.++.+|.|+|.||..||++||+++++||+||+++
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 74 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDW 74 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCc
Confidence 456777777775 4566777777999999999999999999999999874
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=4.4e-16 Score=111.69 Aligned_cols=51 Identities=51% Similarity=1.206 Sum_probs=46.2
Q ss_pred CCCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 184 SGERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
..++..|+||++.|...+.+..+| |+|.||..||.+|++++.+||+||+++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 62 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCcc
Confidence 344678999999999888888899 999999999999999999999999875
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.55 E-value=3.3e-15 Score=99.94 Aligned_cols=49 Identities=33% Similarity=0.794 Sum_probs=42.5
Q ss_pred CCccCccccccccCCC-ceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 186 ERVSCSVCLQDFQLGE-TARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 186 e~~~C~ICle~f~~ge-~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
++..|+||++++..++ .+..+| |+|.||..||.+|++++.+||+||+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 3568999999997554 567777 999999999999999999999999875
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=6.8e-15 Score=102.42 Aligned_cols=50 Identities=28% Similarity=0.702 Sum_probs=42.7
Q ss_pred CCCccCccccccccCC----CceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQLG----ETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~g----e~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
.++..|+||++.+... +.+..++ |+|.||..||++|++++.+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 66 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKI 66 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCcc
Confidence 4457899999999853 3346777 999999999999999999999999875
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.52 E-value=4e-15 Score=114.05 Aligned_cols=48 Identities=31% Similarity=0.645 Sum_probs=41.1
Q ss_pred CCccCccccccccCCC---------------ceeecCCCCCcccHhhHHHHHhcCCCCCCccCC
Q 026690 186 ERVSCSVCLQDFQLGE---------------TARSLPHCHHMFHIPCIDKWLLGHASCPLCRRD 234 (235)
Q Consensus 186 e~~~C~ICle~f~~ge---------------~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 234 (235)
++..|+||+++|...- .++.+| |+|.||..||++||.++.+||+||++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 98 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNRE 98 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSB
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCc
Confidence 4568999999998541 255567 99999999999999999999999986
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.51 E-value=5.9e-15 Score=103.55 Aligned_cols=50 Identities=30% Similarity=0.776 Sum_probs=42.6
Q ss_pred CCCccCccccccccC----CCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQL----GETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~----ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
.++..|+||++.+.. ++.+..++ |+|.||..||++|++++.+||+||.++
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKI 61 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCcc
Confidence 445789999999875 24456777 999999999999999999999999864
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.50 E-value=1.3e-14 Score=111.19 Aligned_cols=48 Identities=25% Similarity=0.704 Sum_probs=39.2
Q ss_pred CccCccccccccCCC---------------ceeecCCCCCcccHhhHHHHH-----hcCCCCCCccCCC
Q 026690 187 RVSCSVCLQDFQLGE---------------TARSLPHCHHMFHIPCIDKWL-----LGHASCPLCRRDL 235 (235)
Q Consensus 187 ~~~C~ICle~f~~ge---------------~v~~Lp~C~H~FH~~CI~~WL-----~~~~sCPlCR~~v 235 (235)
+..|+||+++|.... .++.+| |+|.||..||++|+ ..+.+||+||..+
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 458999999997643 233566 99999999999999 4577999999853
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.49 E-value=9.2e-15 Score=100.28 Aligned_cols=49 Identities=29% Similarity=0.709 Sum_probs=42.0
Q ss_pred CCccCccccccccCC----CceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 186 ERVSCSVCLQDFQLG----ETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 186 e~~~C~ICle~f~~g----e~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
++..|+||++.+... +.+..++ |+|.||..||.+|++++.+||+||.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 54 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKI 54 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccC
Confidence 356899999999753 3456777 999999999999999999999999864
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.1e-14 Score=101.39 Aligned_cols=47 Identities=32% Similarity=0.683 Sum_probs=41.5
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
.++..|+||++.+.. ...+| |+|.||..||.+|+.++.+||+||.++
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEI 59 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBC
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchh
Confidence 445789999999875 56778 999999999999999999999999875
No 15
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.47 E-value=2.5e-15 Score=117.20 Aligned_cols=48 Identities=33% Similarity=0.691 Sum_probs=1.0
Q ss_pred CCccCccccccccCC-------------C--ceeecCCCCCcccHhhHHHHHhcCCCCCCccCC
Q 026690 186 ERVSCSVCLQDFQLG-------------E--TARSLPHCHHMFHIPCIDKWLLGHASCPLCRRD 234 (235)
Q Consensus 186 e~~~C~ICle~f~~g-------------e--~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 234 (235)
++..|+||+++|+.. + .+..++ |+|.||..||++||+++.+||+||++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~ 109 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNRE 109 (117)
T ss_dssp CC--------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCe
Confidence 456899999999752 2 222345 99999999999999999999999986
No 16
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.3e-14 Score=103.64 Aligned_cols=49 Identities=24% Similarity=0.743 Sum_probs=41.6
Q ss_pred CCCccCccccccccCCCceeecCCCC-----CcccHhhHHHHHhcC--CCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCH-----HMFHIPCIDKWLLGH--ASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~-----H~FH~~CI~~WL~~~--~sCPlCR~~v 235 (235)
.++..|+||+++++.++.+ ++| |+ |.||..||++||..+ .+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 4456899999999877765 588 86 999999999999876 4899999864
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5e-14 Score=99.65 Aligned_cols=48 Identities=25% Similarity=0.529 Sum_probs=41.1
Q ss_pred CCCCccCccccccccCCCceeec-CCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 184 SGERVSCSVCLQDFQLGETARSL-PHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~L-p~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
..++..|+||++.+.. ...+ + |+|.||..||.+|++.+.+||+||+++
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (72)
T 2djb_A 12 LTPYILCSICKGYLID---ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVV 60 (72)
T ss_dssp CCGGGSCTTTSSCCSS---CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCC
T ss_pred cCCCCCCCCCChHHHC---cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCccc
Confidence 3446789999999885 4455 6 999999999999999999999999875
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.46 E-value=3.8e-14 Score=98.80 Aligned_cols=47 Identities=34% Similarity=0.889 Sum_probs=41.0
Q ss_pred CCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 186 ERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
++..|+||++.+.. .+..+| |+|.||..||.+|++++.+||+||.++
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 50 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCC
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhh
Confidence 45689999999863 457788 999999999999999999999999864
No 19
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-14 Score=101.34 Aligned_cols=46 Identities=37% Similarity=0.908 Sum_probs=40.8
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
.++..|+||++.+.. ..+| |+|.||..||.+|+.++.+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQM 58 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCT
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcc
Confidence 446789999999875 6678 999999999999999999999999864
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=9.1e-14 Score=101.22 Aligned_cols=51 Identities=25% Similarity=0.684 Sum_probs=43.6
Q ss_pred CCCCccCccccccccCCCc-eeecCCCCCcccHhhHHHHHhcC---CCCCCccCCC
Q 026690 184 SGERVSCSVCLQDFQLGET-ARSLPHCHHMFHIPCIDKWLLGH---ASCPLCRRDL 235 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~-v~~Lp~C~H~FH~~CI~~WL~~~---~sCPlCR~~v 235 (235)
..+...|+||++.|..++. +..+| |+|.||..||.+|++.+ .+||+||+++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 3456789999999997765 67788 99999999999999976 7899999863
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=99.86 Aligned_cols=48 Identities=23% Similarity=0.499 Sum_probs=41.6
Q ss_pred CCCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 184 SGERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
..+...|+||++.+.. ...+| |+|+||..||.+|+..+.+||+||.++
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp CCCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred CCCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 3445789999999975 55678 999999999999999999999999864
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.7e-13 Score=95.60 Aligned_cols=48 Identities=33% Similarity=0.751 Sum_probs=40.5
Q ss_pred CCCCccCccccccccCCCceeecCCCCCcccHhhHHHHHh---cCCCCCCccCCC
Q 026690 184 SGERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLL---GHASCPLCRRDL 235 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~---~~~sCPlCR~~v 235 (235)
..++..|+||++.+.. ...+| |+|.||..||.+|++ .+.+||+||+++
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred CccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 3456799999999885 66677 999999999999997 466899999875
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.39 E-value=2.1e-13 Score=97.07 Aligned_cols=48 Identities=25% Similarity=0.604 Sum_probs=40.8
Q ss_pred CCCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC--CCCCCccCC
Q 026690 184 SGERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGH--ASCPLCRRD 234 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~--~sCPlCR~~ 234 (235)
..++..|+||++.|.. ...+|.|+|.||..||.+|++.+ .+||+||++
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~ 61 (74)
T 2yur_A 12 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 61 (74)
T ss_dssp SCGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCS
T ss_pred CCCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCc
Confidence 3446789999999985 55677799999999999999866 689999986
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.7e-13 Score=94.17 Aligned_cols=47 Identities=19% Similarity=0.551 Sum_probs=39.5
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHh-cCCCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLL-GHASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v 235 (235)
.++..|+||++.+.. ...++ |+|.||..||.+|+. .+.+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS---PKQTE-CGHRFCESCMAALLSSSSPKCTACQESI 60 (66)
T ss_dssp CCCEECTTTCCEESS---CCCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCC
T ss_pred CcCCCCCCCChHhcC---eeECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCC
Confidence 446789999999975 34467 999999999999995 667999999875
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.39 E-value=9.6e-14 Score=110.31 Aligned_cols=45 Identities=36% Similarity=0.947 Sum_probs=40.6
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
+..|+||++.|.. +..+| |||.||..||.+|+..+.+||+||.++
T Consensus 53 ~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp HSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred cCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 4579999999975 67788 999999999999999999999999875
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.34 E-value=7.6e-13 Score=94.62 Aligned_cols=47 Identities=23% Similarity=0.497 Sum_probs=41.0
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhc-CCCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG-HASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v 235 (235)
.++..|+||++.|.. ...+| |||.||..||.+|+.+ +.+||+||.++
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred cccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCC
Confidence 446799999999975 66678 9999999999999997 78999999864
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=1.2e-12 Score=94.17 Aligned_cols=47 Identities=32% Similarity=0.709 Sum_probs=40.4
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhc------CCCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG------HASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~------~~sCPlCR~~v 235 (235)
.++..|+||++.+.. ...+| |+|.||..||.+|+.. +..||+||.++
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred ccCCCCcCCChhhCc---ceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 446789999999875 45678 9999999999999987 67899999864
No 28
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.5e-12 Score=89.43 Aligned_cols=44 Identities=36% Similarity=0.782 Sum_probs=37.5
Q ss_pred CCCCccCccccccccCCCceeecCCCCCcccHhhHHHHHh---cCCCCCCc
Q 026690 184 SGERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLL---GHASCPLC 231 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~---~~~sCPlC 231 (235)
..++..|+||++.+.. ...+| |+|.||..||.+|++ .+.+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456789999999985 56677 999999999999998 45689998
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.32 E-value=5.5e-13 Score=100.40 Aligned_cols=46 Identities=35% Similarity=0.860 Sum_probs=39.8
Q ss_pred CCccCccccccccCCCceee-cCCCCCcccHhhHHHHHhcC-CCCCCccCCC
Q 026690 186 ERVSCSVCLQDFQLGETARS-LPHCHHMFHIPCIDKWLLGH-ASCPLCRRDL 235 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~-Lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v 235 (235)
++..|+||++.|.. ... ++ |+|.||..||.+|+..+ .+||+||.++
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (100)
T 3lrq_A 21 EVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPL 68 (100)
T ss_dssp HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcC
Confidence 35689999999974 555 77 99999999999999987 6999999864
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.31 E-value=3.8e-13 Score=96.10 Aligned_cols=48 Identities=31% Similarity=0.620 Sum_probs=40.7
Q ss_pred CCCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhc-------CCCCCCccCCC
Q 026690 184 SGERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG-------HASCPLCRRDL 235 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~-------~~sCPlCR~~v 235 (235)
..++..|+||++.|.. ...+| |+|.||..||.+|+.. +.+||+||.++
T Consensus 9 ~~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 9 VQEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred cccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 3456789999999975 55678 9999999999999986 67899999864
No 31
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.31 E-value=7e-13 Score=102.93 Aligned_cols=49 Identities=29% Similarity=0.714 Sum_probs=42.3
Q ss_pred CCccCccccccccCC----CceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 186 ERVSCSVCLQDFQLG----ETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 186 e~~~C~ICle~f~~g----e~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
++..|+||++.|... +.+..++ |||.||..||++|++++.+||+||+.+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKI 58 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBC
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcC
Confidence 457899999999753 4457777 999999999999999999999999864
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.5e-12 Score=93.78 Aligned_cols=47 Identities=34% Similarity=0.730 Sum_probs=40.5
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhc------CCCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG------HASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~------~~sCPlCR~~v 235 (235)
.++..|+||++.+.. ...+| |+|.||..||.+|+.. +..||+||.++
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS
T ss_pred cCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc
Confidence 445789999999975 55678 9999999999999987 78999999864
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.30 E-value=9.5e-13 Score=98.46 Aligned_cols=46 Identities=30% Similarity=0.803 Sum_probs=39.6
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
...|+||++.|.. ...++.|||.||..||.+|+..+.+||+||.++
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 67 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcC
Confidence 4689999999985 555523999999999999999999999999864
No 34
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.29 E-value=2.1e-12 Score=95.08 Aligned_cols=49 Identities=24% Similarity=0.565 Sum_probs=40.9
Q ss_pred CCCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC--CCCCCccCCC
Q 026690 184 SGERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGH--ASCPLCRRDL 235 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~--~sCPlCR~~v 235 (235)
..++..|+||++.|.. ...+|.|||.||..||.+|+..+ .+||+||.++
T Consensus 10 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 4456899999999985 56677799999999999999754 5899999863
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.4e-12 Score=86.55 Aligned_cols=44 Identities=34% Similarity=0.797 Sum_probs=36.7
Q ss_pred CCCCccCccccccccCCCceeecCCCCCcccHhhHHHHH---hcCCCCCCc
Q 026690 184 SGERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWL---LGHASCPLC 231 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL---~~~~sCPlC 231 (235)
..++..|+||++.+.. ...+| |+|.||..||.+|+ .++.+||+|
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE---PVIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSS---CCCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCc---cEeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456789999999986 45578 99999999999995 456789998
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.27 E-value=1.9e-12 Score=98.34 Aligned_cols=46 Identities=28% Similarity=0.666 Sum_probs=40.2
Q ss_pred CCccCccccccccCCCceeec-CCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 186 ERVSCSVCLQDFQLGETARSL-PHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~L-p~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
++..|+||++.+.. ...+ | |||.||..||.+|+..+.+||+||.++
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQV 60 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBS
T ss_pred CcCCCccCChHHhC---cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCccc
Confidence 45789999999975 5555 7 999999999999999999999999864
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=3.3e-12 Score=88.36 Aligned_cols=48 Identities=21% Similarity=0.522 Sum_probs=38.2
Q ss_pred CccCccccc-cccCCCce-eecCCCCCcccHhhHHHHHhc-CCCCCCccCCC
Q 026690 187 RVSCSVCLQ-DFQLGETA-RSLPHCHHMFHIPCIDKWLLG-HASCPLCRRDL 235 (235)
Q Consensus 187 ~~~C~ICle-~f~~ge~v-~~Lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v 235 (235)
+..|+||++ .+...... ..++ |||.||..||++|+.+ +.+||+||.++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 53 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPL 53 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcc
Confidence 468999999 77654433 3466 9999999999999764 56899999864
No 38
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=4.4e-12 Score=91.10 Aligned_cols=47 Identities=23% Similarity=0.693 Sum_probs=39.6
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC--CCCCCccCC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGH--ASCPLCRRD 234 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~--~sCPlCR~~ 234 (235)
+....|+||++.+..++.- +.|+|.||..||.+||+++ .+||+||++
T Consensus 13 ~~i~~C~IC~~~i~~g~~C---~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~ 61 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 61 (74)
T ss_dssp SSSCBCSSSCCBCSSSEEC---SSSCCEECHHHHHHHSTTCSSCCCTTTCSC
T ss_pred CCCCcCcchhhHcccCCcc---CCCCchhhHHHHHHHHHhcCCCCCCCCcCc
Confidence 3457899999999875433 2599999999999999987 899999986
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.25 E-value=2.1e-12 Score=100.51 Aligned_cols=45 Identities=29% Similarity=0.628 Sum_probs=39.0
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCC-CCCCccCCC
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHA-SCPLCRRDL 235 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~v 235 (235)
+..|+||++.|.. +..+| |||.||..||.+|+..+. +||+||.++
T Consensus 52 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDL 97 (124)
T ss_dssp HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccC
Confidence 4689999999985 66678 999999999999998554 999999864
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.24 E-value=8.9e-12 Score=101.47 Aligned_cols=45 Identities=31% Similarity=0.733 Sum_probs=38.8
Q ss_pred CccCccccccccCCCceeec-CCCCCcccHhhHHHHHhc-CCCCCCccCCC
Q 026690 187 RVSCSVCLQDFQLGETARSL-PHCHHMFHIPCIDKWLLG-HASCPLCRRDL 235 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~L-p~C~H~FH~~CI~~WL~~-~~sCPlCR~~v 235 (235)
...|+||++.|.. ...+ | |+|.||..||.+|+.. +.+||+||.++
T Consensus 54 ~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 54 ELMCPICLDMLKN---TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HHBCTTTSSBCSS---EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCcccChHhhC---cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 4689999999985 4444 7 9999999999999997 78999999864
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.24 E-value=3.6e-12 Score=98.90 Aligned_cols=50 Identities=28% Similarity=0.702 Sum_probs=42.1
Q ss_pred CCCccCccccccccCC----CceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQLG----ETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~g----e~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
++...|+||++.++.. .....++ |+|.||..||++|++.+.+||+||.++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKI 123 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcC
Confidence 3457899999999852 3346667 999999999999999999999999875
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=1e-11 Score=94.25 Aligned_cols=45 Identities=33% Similarity=0.772 Sum_probs=38.4
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCC---CCCCccCCC
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHA---SCPLCRRDL 235 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~---sCPlCR~~v 235 (235)
...|+||++.+.. ...+| |+|.||..||.+|+..+. +||+||.++
T Consensus 21 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred CCCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcC
Confidence 4689999999875 45578 999999999999998764 899999864
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.18 E-value=9.9e-12 Score=95.99 Aligned_cols=48 Identities=29% Similarity=0.590 Sum_probs=40.8
Q ss_pred CCCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCC-CCCCccCCC
Q 026690 184 SGERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHA-SCPLCRRDL 235 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~v 235 (235)
..++..|+||++.+.. ...++ |+|.||..||.+|+..+. +||+||.++
T Consensus 15 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (118)
T 3hct_A 15 LESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (118)
T ss_dssp CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCc
Confidence 3445799999999975 56678 999999999999998765 999999864
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.17 E-value=2.8e-12 Score=98.43 Aligned_cols=46 Identities=28% Similarity=0.808 Sum_probs=39.8
Q ss_pred CCccCccccccccCCCceeecCCCCCcccHhhHHHHHhc-CCCCCCccCCC
Q 026690 186 ERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG-HASCPLCRRDL 235 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v 235 (235)
++..|+||++.+.. ...+| |+|.||..||.+|+.+ +.+||+||.++
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 35789999999975 66678 9999999999999986 67899999864
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.15 E-value=3.3e-11 Score=88.28 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=42.5
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
.+...|+||++-|++ ..++| |||+|+..||.+|+..+.+||+||.++
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l 58 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQML 58 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred chheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCC
Confidence 456899999999986 77888 999999999999999999999999864
No 46
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.15 E-value=2.5e-11 Score=91.78 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=42.5
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
.+...||||++-|++ +..+| |||+|+..||.+|+..+.+||+||.++
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l 73 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTL 73 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBC
T ss_pred cHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCC
Confidence 456799999999986 77889 999999999999999999999999864
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.14 E-value=2.4e-11 Score=98.07 Aligned_cols=45 Identities=27% Similarity=0.626 Sum_probs=39.2
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCC-CCCCccCCC
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHA-SCPLCRRDL 235 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~v 235 (235)
...|+||++.|.. ...+| |+|.||..||.+|+..+. +||+||.++
T Consensus 78 ~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDL 123 (150)
T ss_dssp HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccC
Confidence 4689999999975 56688 999999999999999765 899999864
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.13 E-value=1.6e-11 Score=94.24 Aligned_cols=45 Identities=29% Similarity=0.606 Sum_probs=39.4
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHHHHHhc-CCCCCCccCCC
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG-HASCPLCRRDL 235 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v 235 (235)
+..|+||++.+.. +..+| |||.||..||.+|+.. +.+||+||.++
T Consensus 23 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPC 68 (116)
T ss_dssp HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCC
Confidence 4689999999975 55578 9999999999999997 77999999864
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.11 E-value=2.6e-11 Score=84.27 Aligned_cols=46 Identities=20% Similarity=0.476 Sum_probs=39.1
Q ss_pred CCccCccccccccCCCceeec--CCCCCc-ccHhhHHHHHhcCCCCCCccCCC
Q 026690 186 ERVSCSVCLQDFQLGETARSL--PHCHHM-FHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~L--p~C~H~-FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
++..|+||++.... +..+ | |||. |+.+|+.+|.+++..||+||+++
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i 55 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPI 55 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcch
Confidence 34689999998764 4444 8 9999 89999999999999999999875
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.10 E-value=7.7e-11 Score=88.74 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=42.1
Q ss_pred CCCccCccccccccCCCceeecCCCC-CcccHhhHHHHHhcCCCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCH-HMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~-H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
.+...||||++-|++ +.++| || |+|+..||.+|+..+.+||+||.++
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l 67 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPL 67 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBC
T ss_pred cHhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCC
Confidence 446799999999986 77788 99 9999999999999999999999864
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=2.7e-11 Score=81.80 Aligned_cols=44 Identities=23% Similarity=0.639 Sum_probs=37.6
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
.+...|+||++.|.. ...+| |+|.||..||.+| +.+||+||+++
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~ 47 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPW 47 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSS
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEe
Confidence 456789999999985 67788 9999999999884 67899999864
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.06 E-value=5.3e-11 Score=82.41 Aligned_cols=46 Identities=22% Similarity=0.531 Sum_probs=38.7
Q ss_pred CCccCccccccccCCCceeec--CCCCCc-ccHhhHHHHHhcCCCCCCccCCC
Q 026690 186 ERVSCSVCLQDFQLGETARSL--PHCHHM-FHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~L--p~C~H~-FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
.+..|+||++.... ...+ | |||. |+..|+.+|.+++..||+||+++
T Consensus 6 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 6 LLKPCSLCEKRPRD---GNIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GGSBCTTTSSSBSC---EEEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred cCCCCcccCCcCCC---eEEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 34689999998654 3344 8 9999 99999999999889999999875
No 53
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.06 E-value=1.4e-10 Score=83.77 Aligned_cols=50 Identities=18% Similarity=0.538 Sum_probs=38.8
Q ss_pred CCCccCccccccccCCCce-eecCCCCCcccHhhHHHHHh-cCCCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQLGETA-RSLPHCHHMFHIPCIDKWLL-GHASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v-~~Lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v 235 (235)
.++..|+||++.+...+.. .-++ |||.||..|+.+|+. .+..||+||+++
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPY 60 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBC
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCcc
Confidence 4567899999998654332 2245 999999999999985 467899999864
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.05 E-value=9.5e-11 Score=107.91 Aligned_cols=45 Identities=24% Similarity=0.761 Sum_probs=40.1
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHHHHHh-cCCCCCCccCCC
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLL-GHASCPLCRRDL 235 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v 235 (235)
...|+||++.+.. +..+| |||.||..||.+|+. .+.+||+||.++
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i 377 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEI 377 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCcc
Confidence 3689999999865 77788 999999999999999 788999999875
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.04 E-value=5.4e-11 Score=95.12 Aligned_cols=47 Identities=19% Similarity=0.463 Sum_probs=39.9
Q ss_pred CCCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCC-CCCCccCC
Q 026690 184 SGERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHA-SCPLCRRD 234 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~ 234 (235)
..++..|+||++.+.. ...++ |||.||..||.+|+..+. +||+||.+
T Consensus 28 l~~~~~C~IC~~~~~~---pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~ 75 (141)
T 3knv_A 28 LEAKYLCSACRNVLRR---PFQAQ-CGHRYCSFCLASILSSGPQNCAACVHE 75 (141)
T ss_dssp CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHGGGSCEECHHHHHT
T ss_pred CCcCcCCCCCChhhcC---cEECC-CCCccCHHHHHHHHhcCCCCCCCCCCc
Confidence 3456799999999985 45577 999999999999998665 89999975
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=6.2e-11 Score=91.34 Aligned_cols=43 Identities=26% Similarity=0.664 Sum_probs=37.6
Q ss_pred CccCccccccccCCCceeec-CCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 187 RVSCSVCLQDFQLGETARSL-PHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~L-p~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
...|+||++.|.. +..+ | |||.||..||..|+. ..||+||.++
T Consensus 22 ~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~ 65 (117)
T 1jm7_B 22 LLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPA 65 (117)
T ss_dssp TTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBC
T ss_pred CCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcC
Confidence 5789999999975 5666 7 999999999999987 8899999864
No 57
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.98 E-value=1.1e-10 Score=105.52 Aligned_cols=51 Identities=25% Similarity=0.705 Sum_probs=39.7
Q ss_pred CCCccCccccccccC-CCce---eecCCCCCcccHhhHHHHHhcC-----------CCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQL-GETA---RSLPHCHHMFHIPCIDKWLLGH-----------ASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~-ge~v---~~Lp~C~H~FH~~CI~~WL~~~-----------~sCPlCR~~v 235 (235)
++..+|+||++.+.. ++.+ ...++|+|.||..||.+||+.. ++||.||++|
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 456789999999987 3332 2234699999999999999842 4799999864
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.96 E-value=1.3e-10 Score=82.83 Aligned_cols=41 Identities=22% Similarity=0.638 Sum_probs=36.3
Q ss_pred CccCccccccccCCCceeecCCCCCc-ccHhhHHHHHhcCCCCCCccCCC
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHM-FHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
+..|+||++.+.. +..+| |+|. ||..|+.+| ..||+||.++
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i 65 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVI 65 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBC
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCc
Confidence 4689999999875 67788 9999 999999999 8999999875
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.91 E-value=5.7e-10 Score=91.00 Aligned_cols=48 Identities=29% Similarity=0.581 Sum_probs=40.5
Q ss_pred CCCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC-CCCCCccCCC
Q 026690 184 SGERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGH-ASCPLCRRDL 235 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v 235 (235)
..++..|+||++.+.. +..++ |||+||..||.+|+..+ .+||+||.++
T Consensus 15 ~~~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (170)
T 3hcs_A 15 LESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (170)
T ss_dssp CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCCChhhcC---cEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCc
Confidence 3456799999999985 56677 99999999999999865 4999999864
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.91 E-value=8.9e-10 Score=95.28 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=40.7
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC-CCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGH-ASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v 235 (235)
.+...||||++-|.+ +.++| |||+||..||.+|+..+ .+||+||.++
T Consensus 206 ~~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~ 253 (281)
T 2c2l_A 206 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPL 253 (281)
T ss_dssp CSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCC
T ss_pred CcccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCC
Confidence 456789999999986 77789 99999999999999864 4599999875
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=7.3e-10 Score=82.43 Aligned_cols=46 Identities=17% Similarity=0.459 Sum_probs=38.6
Q ss_pred CCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC------CCCCC--ccCC
Q 026690 186 ERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGH------ASCPL--CRRD 234 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~------~sCPl--CR~~ 234 (235)
+...||||++.|++ +.++|.|||+|+..||.+|+..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45789999999985 66675599999999999999864 48999 9853
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.87 E-value=1.3e-09 Score=74.96 Aligned_cols=46 Identities=24% Similarity=0.667 Sum_probs=35.9
Q ss_pred CCccCccccccccCCCceeecCCCC--C---cccHhhHHHHHhc--CCCCCCccCCC
Q 026690 186 ERVSCSVCLQDFQLGETARSLPHCH--H---MFHIPCIDKWLLG--HASCPLCRRDL 235 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~C~--H---~FH~~CI~~WL~~--~~sCPlCR~~v 235 (235)
+...|.||+++. ++. ..+| |. | .||..||++|+.. +.+||+||.++
T Consensus 5 ~~~~CrIC~~~~--~~~-l~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNE-RFRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp SCCEETTTTEEC--SCC-CCCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCEeEEeecCC--CCc-eecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 456899999983 333 3578 55 4 9999999999974 67899999864
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=4.4e-09 Score=73.84 Aligned_cols=43 Identities=28% Similarity=0.644 Sum_probs=36.3
Q ss_pred CCCccCccccccccCCCceeecCCCCCc-ccHhhHHHHHhcCCCCCCccCCC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHM-FHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
.++..|.||++.... +..+| |+|. |+..|+.. ...||+||.++
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i 56 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFV 56 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcch
Confidence 345789999998764 77889 9999 99999983 57999999875
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=2.6e-09 Score=76.01 Aligned_cols=41 Identities=22% Similarity=0.643 Sum_probs=34.6
Q ss_pred CccCccccccccCCCceeecCCCCCc-ccHhhHHHHHhcCCCCCCccCCC
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHM-FHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
+..|+||++.+.. +..+| |+|. ||..|+.+ ...||+||.++
T Consensus 25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i 66 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVI 66 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBC
T ss_pred CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCcee
Confidence 4589999999865 66788 9999 99999964 48899999864
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=3.9e-09 Score=78.12 Aligned_cols=48 Identities=21% Similarity=0.659 Sum_probs=38.9
Q ss_pred CCccCccccccccCCCceeecCCCCCcccHhhHHHHHhc--------CCCCCC--ccCC
Q 026690 186 ERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG--------HASCPL--CRRD 234 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~--------~~sCPl--CR~~ 234 (235)
+..+|+||++++...+.+...+ |+|.||.+|+..++.. ..+||. ||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4568999999998655555556 9999999999999873 237999 9875
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.73 E-value=6.5e-09 Score=86.35 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=41.1
Q ss_pred CCCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC-CCCCCccCCC
Q 026690 184 SGERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGH-ASCPLCRRDL 235 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v 235 (235)
..+...||||++-|.+ +.++| |||+|+..||.+|+..+ .+||+||.++
T Consensus 103 ip~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l 151 (179)
T 2f42_A 103 IPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPL 151 (179)
T ss_dssp CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CcHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCC
Confidence 3456899999999986 77778 99999999999999864 4799999864
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.66 E-value=3.8e-09 Score=76.26 Aligned_cols=41 Identities=29% Similarity=0.690 Sum_probs=35.4
Q ss_pred CccCccccccccCCCceeecCCCCCc-ccHhhHHHHHhcCCCCCCccCCC
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHM-FHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
+..|+||++.+.. +..+| |||. |+..|+..| ..||+||.++
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i 59 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRV 59 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBC
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchh
Confidence 4589999998775 77789 9999 999999987 3999999875
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.59 E-value=2.2e-08 Score=68.88 Aligned_cols=45 Identities=11% Similarity=0.276 Sum_probs=39.0
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
..|+||++.+++ ...++.|||+|.+.||++|++++.+||+++.++
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L 48 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 48 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBC
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCC
Confidence 579999999985 555633999999999999999999999999865
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.51 E-value=2.1e-08 Score=91.11 Aligned_cols=42 Identities=29% Similarity=0.736 Sum_probs=37.0
Q ss_pred CCccCccccccccCCCceeecCCCCCc-ccHhhHHHHHhcCCCCCCccCCC
Q 026690 186 ERVSCSVCLQDFQLGETARSLPHCHHM-FHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
++..|+||++.+.. +..+| |||. ||..|+..| ..||+||.++
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i 336 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGII 336 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBC
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCc
Confidence 45789999999875 77789 9999 999999998 7899999875
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.47 E-value=5.4e-08 Score=85.11 Aligned_cols=46 Identities=24% Similarity=0.600 Sum_probs=37.6
Q ss_pred CCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC--CCCCC--ccCC
Q 026690 186 ERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGH--ASCPL--CRRD 234 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~--~sCPl--CR~~ 234 (235)
....||||++.|+. .|+... |||+|+..||.+|+..+ .+||+ ||+.
T Consensus 180 ~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~ 229 (267)
T 3htk_C 180 IELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQV 229 (267)
T ss_dssp CCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCE
T ss_pred eeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCc
Confidence 45689999999974 444345 99999999999999864 47999 9975
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.30 E-value=4.4e-07 Score=68.14 Aligned_cols=44 Identities=27% Similarity=0.609 Sum_probs=36.7
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHh-cCCCCCCccCCC
Q 026690 189 SCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLL-GHASCPLCRRDL 235 (235)
Q Consensus 189 ~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v 235 (235)
-|++|--.+. ...|..| |+|.||.+|+..|.+ +.++||+||.+|
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCee
Confidence 4788877766 3568889 999999999999986 468999999875
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.08 E-value=2.4e-06 Score=73.80 Aligned_cols=45 Identities=29% Similarity=0.727 Sum_probs=37.7
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCC--CCCCccCC
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHA--SCPLCRRD 234 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~--sCPlCR~~ 234 (235)
...|.||.+-...| ...++|+|.||..|+.+|++.+. +||.|+.+
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 226 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCB
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 56899999998864 44556999999999999998654 89999874
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.74 E-value=0.0073 Score=41.76 Aligned_cols=45 Identities=24% Similarity=0.469 Sum_probs=33.4
Q ss_pred CCccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC----CCCCCccCC
Q 026690 186 ERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGH----ASCPLCRRD 234 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~----~sCPlCR~~ 234 (235)
....|.||.+. ++ +...-.|...||..|+++.|... -.||.|+..
T Consensus 11 ~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34679999753 34 44455699999999999988743 369999753
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.65 E-value=0.0075 Score=44.23 Aligned_cols=36 Identities=22% Similarity=0.459 Sum_probs=26.5
Q ss_pred CCccCccccccccCCCceeecCCCCCcccHhhHHH-HH
Q 026690 186 ERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDK-WL 222 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~-WL 222 (235)
++..|+||.+++...-....++ |+|.|+..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHHhc
Confidence 3578999998754322333377 999999999998 53
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.64 E-value=0.0039 Score=46.13 Aligned_cols=43 Identities=21% Similarity=0.478 Sum_probs=35.3
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
..|..|+...+. .... ..|++|..|+..-|.....||+|+++|
T Consensus 29 ~nCKsCWf~~k~---LV~C--~dHYLCl~CLtlmL~~SdrCpIC~~pL 71 (99)
T 2ko5_A 29 QFCKSCWFENKG---LVEC--NNHYLCLNCLTLLLSVSNRCPICKMPL 71 (99)
T ss_dssp CCCCSSCSCCSS---EEEC--SSCEEEHHHHHHTCSSSSEETTTTEEC
T ss_pred ccChhhccccCC---eeee--cchhhHHHHHHHHHhhccCCcccCCcC
Confidence 579999988763 3332 459999999999999999999999864
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=94.74 E-value=0.035 Score=40.22 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=25.1
Q ss_pred CCCCccCccccccccCCCceeecCCCCCcccHhhHHHH
Q 026690 184 SGERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKW 221 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~W 221 (235)
...|..|.||- .|..++....-- |+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC~-~~t~~~l~pCRv-C~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCE-VWTAESLFPCRV-CTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTC-CCCSSCCSSCSS-SSSCCCHHHHHHH
T ss_pred CCCCcccCccc-cccccceecccc-ccccccHhhcccc
Confidence 34567899995 344444433333 9999999999996
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.70 E-value=0.0057 Score=41.58 Aligned_cols=49 Identities=22% Similarity=0.478 Sum_probs=35.7
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHh-----cCCCCCCccC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLL-----GHASCPLCRR 233 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~ 233 (235)
++...|+||...+..++.....-.|..-||..|+.--.. .+-.||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 445689999999876555555556999999999864322 3457999964
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=94.35 E-value=0.025 Score=38.20 Aligned_cols=45 Identities=31% Similarity=0.686 Sum_probs=32.9
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCCCccC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG----HASCPLCRR 233 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~ 233 (235)
.++..|.||.+. ++ +.....|...||..|+..-+.. +-.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GE-IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---SS-EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---Cc-EEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 445689999873 33 4445569999999999986643 336999975
No 79
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=93.01 E-value=0.046 Score=35.26 Aligned_cols=45 Identities=24% Similarity=0.569 Sum_probs=31.5
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCCCccCC
Q 026690 189 SCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG----HASCPLCRRD 234 (235)
Q Consensus 189 ~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~ 234 (235)
.|.||.+.-..++ +.....|...||..|+++=|.+ .-.||.|+..
T Consensus 2 ~C~vC~~~~~~~~-ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDK-LILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSC-CEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCC-EEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 5899987644333 4444569999999999865543 3359999753
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=92.92 E-value=0.024 Score=38.27 Aligned_cols=45 Identities=29% Similarity=0.579 Sum_probs=32.0
Q ss_pred CCccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCCCccCC
Q 026690 186 ERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG----HASCPLCRRD 234 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~ 234 (235)
++..|.||.+. ++ +.....|...||..|+.+-|.. .-.||.|+..
T Consensus 8 ~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 35679999862 33 4444459999999999976553 3359999754
No 81
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=91.48 E-value=0.17 Score=35.65 Aligned_cols=48 Identities=23% Similarity=0.448 Sum_probs=33.0
Q ss_pred CCccCccccccccCCCceeecCCCCCcccHhhHHHHHh-----cCCCCCCccCC
Q 026690 186 ERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLL-----GHASCPLCRRD 234 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~~ 234 (235)
+..-| ||...+..+......-.|..-||..|+.---. .+-.||.|+..
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 34456 99998864555555556999999999853211 34579999753
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=91.26 E-value=0.059 Score=37.56 Aligned_cols=48 Identities=21% Similarity=0.479 Sum_probs=34.2
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHh----cCCCCCCccC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLL----GHASCPLCRR 233 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~----~~~sCPlCR~ 233 (235)
.+...|+||..... ++.....-.|...||..|+..-+. .+-.||.|+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 34457999988754 444445556999999999986554 2446999964
No 83
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.21 E-value=0.022 Score=37.71 Aligned_cols=45 Identities=31% Similarity=0.703 Sum_probs=32.3
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCCCccC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG----HASCPLCRR 233 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~ 233 (235)
.++..|.||.+. ++ +.....|...||..|+.+-|.. .-.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SC-CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---Ce-EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 445689999874 34 4444569999999999976653 235999864
No 84
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=90.85 E-value=0.09 Score=38.84 Aligned_cols=46 Identities=20% Similarity=0.360 Sum_probs=31.9
Q ss_pred CCccCccccccccCCCceeecCCCCCcccHhhHHHHHh---cCCCCCCccC
Q 026690 186 ERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLL---GHASCPLCRR 233 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~---~~~sCPlCR~ 233 (235)
+...| ||-.....+..+. ...|...||..|+..=+. ..-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~-Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMIC-CDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEE-BTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEE-cCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 33567 8988776555444 445999999999875332 2346999974
No 85
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=90.75 E-value=0.085 Score=34.33 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=32.3
Q ss_pred cCccccccccCCCceeecC-CCCCcccHhhHHHH----HhcCCCCCCcc
Q 026690 189 SCSVCLQDFQLGETARSLP-HCHHMFHIPCIDKW----LLGHASCPLCR 232 (235)
Q Consensus 189 ~C~ICle~f~~ge~v~~Lp-~C~H~FH~~CI~~W----L~~~~sCPlCR 232 (235)
.|.+|...+..++.....- .|..-||..|+.-- ...+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5889999987666555555 69999999996522 13567899996
No 86
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=90.62 E-value=0.19 Score=34.36 Aligned_cols=49 Identities=18% Similarity=0.383 Sum_probs=34.0
Q ss_pred CCCccCccccccccCCCceeecC-CCCCcccHhhHHHHH------h----cCCCCCCccC
Q 026690 185 GERVSCSVCLQDFQLGETARSLP-HCHHMFHIPCIDKWL------L----GHASCPLCRR 233 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp-~C~H~FH~~CI~~WL------~----~~~sCPlCR~ 233 (235)
+....|++|.+.+..++.....- .|.--||..|+.--- . .+-.||.|++
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 34568999999998777776666 799999999975221 1 1446888853
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=89.85 E-value=0.095 Score=39.21 Aligned_cols=47 Identities=23% Similarity=0.472 Sum_probs=31.1
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCCCcc
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG----HASCPLCR 232 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR 232 (235)
.++..|.||.+.=+..+.+. ...|...||..|+...+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~-C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFF-CTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEE-CSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeE-CCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 34568999988643322344 4559999999999987642 23466553
No 88
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=89.39 E-value=0.074 Score=36.76 Aligned_cols=51 Identities=24% Similarity=0.503 Sum_probs=34.3
Q ss_pred CCCCCCccCccccccccCCCceeecCCCCCcccHhhHHHHHh---cCCCCCCccCC
Q 026690 182 DASGERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLL---GHASCPLCRRD 234 (235)
Q Consensus 182 ~~~~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~---~~~sCPlCR~~ 234 (235)
+...+...| ||..... ++.....-.|..-||..|+.---. .+-.||.|+..
T Consensus 14 ~~~~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 14 LYFQGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp CTTTTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCCCCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 334455678 9998776 444444556999999999864221 34579999753
No 89
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=88.95 E-value=0.55 Score=37.07 Aligned_cols=46 Identities=26% Similarity=0.546 Sum_probs=33.3
Q ss_pred CCCCccCccccccccCCCceeecCCCCCcccHhhHHHHHh-----------cCCCCCCccC
Q 026690 184 SGERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLL-----------GHASCPLCRR 233 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~-----------~~~sCPlCR~ 233 (235)
...+..|.||.+. |+ +...-.|...||..||++-+. ..-.||+|+.
T Consensus 60 Dg~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3445789999874 33 444556999999999997663 2346999974
No 90
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=88.80 E-value=0.045 Score=37.45 Aligned_cols=44 Identities=27% Similarity=0.615 Sum_probs=31.6
Q ss_pred CCccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCCCccC
Q 026690 186 ERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG----HASCPLCRR 233 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~ 233 (235)
++..|.||.+. ++ +.....|...||..|+.+-|.. .-.||.|+.
T Consensus 7 ~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 45689999864 34 4444569999999999976553 335999854
No 91
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.24 E-value=0.19 Score=36.64 Aligned_cols=45 Identities=29% Similarity=0.603 Sum_probs=32.7
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCCCccC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG----HASCPLCRR 233 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~ 233 (235)
..+..|.+|.+. ++ +.....|.-.||..|+++=|.. .-.||.|+.
T Consensus 23 ~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 23 DSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 345689999864 34 4445569999999999887653 335999974
No 92
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=88.04 E-value=0.069 Score=35.73 Aligned_cols=44 Identities=30% Similarity=0.669 Sum_probs=31.4
Q ss_pred CCccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCCCccC
Q 026690 186 ERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG----HASCPLCRR 233 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~ 233 (235)
.+..|.||.+. ++ +.....|...||..|+.+-+.. .-.||.|+.
T Consensus 4 ~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC---SS-CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC---Cc-EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 34689999874 44 4444569999999999976553 335998854
No 93
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.94 E-value=0.064 Score=39.24 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=33.1
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCCCccC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG----HASCPLCRR 233 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~ 233 (235)
.++..|.||.+.-.. +.+...-.|...||..|+.+=|.. .-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 345689999987543 334445569999999999865543 335999863
No 94
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=87.63 E-value=0.47 Score=48.09 Aligned_cols=48 Identities=17% Similarity=0.150 Sum_probs=41.0
Q ss_pred CCCCccCccccccccCCCceeecCCCC-CcccHhhHHHHHhcCCCCCCccCCC
Q 026690 184 SGERVSCSVCLQDFQLGETARSLPHCH-HMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~Lp~C~-H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
..+...|||-++-+.+ +.++| -| |+|-+.+|++||..+.+||+=|+++
T Consensus 888 iP~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L 936 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPL 936 (968)
T ss_dssp SCGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CcHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCC
Confidence 4456789999999886 78888 76 6999999999999999999987764
No 95
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=87.47 E-value=0.16 Score=38.17 Aligned_cols=45 Identities=27% Similarity=0.535 Sum_probs=31.8
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCCCccC
Q 026690 189 SCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG----HASCPLCRR 233 (235)
Q Consensus 189 ~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~ 233 (235)
.|.||.+.-..++.+.....|...||..|+++-|.. .-.||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 588888653333445555569999999999876653 336999985
No 96
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=87.34 E-value=0.44 Score=33.06 Aligned_cols=44 Identities=32% Similarity=0.708 Sum_probs=28.9
Q ss_pred CCccCccccccccCCCceeecCC--CC-CcccHhhHHHHHhc----CCCCCCccCC
Q 026690 186 ERVSCSVCLQDFQLGETARSLPH--CH-HMFHIPCIDKWLLG----HASCPLCRRD 234 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~--C~-H~FH~~CI~~WL~~----~~sCPlCR~~ 234 (235)
+..-| ||.+... ++ ....-+ |. ..||..|+. |.. +-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 34567 8988643 43 333445 66 699999998 443 3469999753
No 97
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.18 E-value=0.11 Score=36.04 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=33.0
Q ss_pred CCccCccccccccCCCceeecCCCCCcccHhhHHHHH----hcCCCCCCccC
Q 026690 186 ERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWL----LGHASCPLCRR 233 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL----~~~~sCPlCR~ 233 (235)
+...| ||......++.....-.|..-||..|+.--- ..+..||.|+.
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 34568 7998876665555555699999999986431 23456999964
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=85.96 E-value=1.1 Score=33.40 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=23.5
Q ss_pred CccCccccccc-----cCCCceeecCCCCCcccHhhHH
Q 026690 187 RVSCSVCLQDF-----QLGETARSLPHCHHMFHIPCID 219 (235)
Q Consensus 187 ~~~C~ICle~f-----~~ge~v~~Lp~C~H~FH~~CI~ 219 (235)
...|.+|+..= ..++....-..|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 46799998753 1233455555699999999995
No 99
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.84 E-value=0.48 Score=34.61 Aligned_cols=44 Identities=32% Similarity=0.708 Sum_probs=29.0
Q ss_pred CCccCccccccccCCCceeecCC--CC-CcccHhhHHHHHhc----CCCCCCccCC
Q 026690 186 ERVSCSVCLQDFQLGETARSLPH--CH-HMFHIPCIDKWLLG----HASCPLCRRD 234 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~--C~-H~FH~~CI~~WL~~----~~sCPlCR~~ 234 (235)
+..-| ||.+... ++ ....-+ |. ..||..|+. |.. +-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 44567 9998653 44 333444 65 689999998 442 3469999753
No 100
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=85.73 E-value=0.97 Score=35.08 Aligned_cols=46 Identities=24% Similarity=0.507 Sum_probs=32.5
Q ss_pred CCCCccCccccccccCCCceeecCCCCCcccHhhHHHHH-----h------cCCCCCCccC
Q 026690 184 SGERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWL-----L------GHASCPLCRR 233 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL-----~------~~~sCPlCR~ 233 (235)
...+..|.||-+. ..+.....|...||..||.+-+ . ..-.|++|+.
T Consensus 54 Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4455679999864 3344455699999999999752 1 2246999974
No 101
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.49 E-value=0.33 Score=33.81 Aligned_cols=44 Identities=23% Similarity=0.418 Sum_probs=30.2
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHH---------hcCCCCCCccC
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWL---------LGHASCPLCRR 233 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL---------~~~~sCPlCR~ 233 (235)
.-| ||......+..+. .-.|..-||..|+.--. ..+..||.|+.
T Consensus 17 ~~C-~C~~~~~~~~MI~-Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMIC-CDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCS-TTCCCCCSSCEEE-CSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CEE-ECCCccCCCCEEE-eCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 456 9998876434444 44699999999985211 24678999964
No 102
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=85.38 E-value=0.23 Score=34.98 Aligned_cols=47 Identities=26% Similarity=0.526 Sum_probs=31.2
Q ss_pred CCccCccccccccCCCceeec-CCCCCcccHhhHHHHH---------hcCCCCCCccC
Q 026690 186 ERVSCSVCLQDFQLGETARSL-PHCHHMFHIPCIDKWL---------LGHASCPLCRR 233 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~L-p~C~H~FH~~CI~~WL---------~~~~sCPlCR~ 233 (235)
+...| ||.+....+..+..- +.|..-||..|+.--- ..+..||.|+.
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 44567 899885555444433 1599999999986321 13557999964
No 103
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=84.90 E-value=0.28 Score=34.06 Aligned_cols=49 Identities=22% Similarity=0.442 Sum_probs=33.5
Q ss_pred CCCccCccccccc-cCCCceeecCCCCCcccHhhHHHHHh--cCCCCCCccC
Q 026690 185 GERVSCSVCLQDF-QLGETARSLPHCHHMFHIPCIDKWLL--GHASCPLCRR 233 (235)
Q Consensus 185 ~e~~~C~ICle~f-~~ge~v~~Lp~C~H~FH~~CI~~WL~--~~~sCPlCR~ 233 (235)
.++..|.||.+.- ..++.....-.|.-.||..|+..-.. ..-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4457899998763 33345555567999999999985432 2335988863
No 104
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=84.81 E-value=0.28 Score=35.50 Aligned_cols=49 Identities=22% Similarity=0.442 Sum_probs=33.4
Q ss_pred CCCccCccccccc-cCCCceeecCCCCCcccHhhHHHHHh--cCCCCCCccC
Q 026690 185 GERVSCSVCLQDF-QLGETARSLPHCHHMFHIPCIDKWLL--GHASCPLCRR 233 (235)
Q Consensus 185 ~e~~~C~ICle~f-~~ge~v~~Lp~C~H~FH~~CI~~WL~--~~~sCPlCR~ 233 (235)
+++..|.||.+.- ..++.+.....|.-.||..|+..-+. ..-.||.|+.
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccC
Confidence 4557899998753 23334555567999999999986432 2335988853
No 105
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=84.80 E-value=0.52 Score=35.13 Aligned_cols=47 Identities=23% Similarity=0.490 Sum_probs=33.4
Q ss_pred CccCccccccccCCCceeecC-CCCCcccHhhHHHH------H----hcCCCCCCccC
Q 026690 187 RVSCSVCLQDFQLGETARSLP-HCHHMFHIPCIDKW------L----LGHASCPLCRR 233 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp-~C~H~FH~~CI~~W------L----~~~~sCPlCR~ 233 (235)
...|+||.+.+..+......- .|..-||..|+.-= + ..+-.||.|+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 357999999987665555553 69999999997521 1 03446999964
No 106
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=83.01 E-value=0.62 Score=31.32 Aligned_cols=49 Identities=16% Similarity=0.414 Sum_probs=34.4
Q ss_pred CCCccCcccccccc-CCCceeecCCCCCcccHhhHHHHHh-------cCCCCCCccC
Q 026690 185 GERVSCSVCLQDFQ-LGETARSLPHCHHMFHIPCIDKWLL-------GHASCPLCRR 233 (235)
Q Consensus 185 ~e~~~C~ICle~f~-~ge~v~~Lp~C~H~FH~~CI~~WL~-------~~~sCPlCR~ 233 (235)
.++..|.||..... .++.+.....|...||..|+.+-+. ..-.||.|+.
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 45678999998643 2344555667999999999886442 2346998864
No 107
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=82.85 E-value=0.12 Score=35.52 Aligned_cols=47 Identities=21% Similarity=0.411 Sum_probs=30.2
Q ss_pred CCccCccccccccCCCceeec-CCCCCcccHhhHHHH---Hh-----cCCCCCCccC
Q 026690 186 ERVSCSVCLQDFQLGETARSL-PHCHHMFHIPCIDKW---LL-----GHASCPLCRR 233 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~L-p~C~H~FH~~CI~~W---L~-----~~~sCPlCR~ 233 (235)
+...| ||......+..+..- +.|..-||..|+.-- .. .+-.||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34567 897776655555443 259999999998421 01 1356999974
No 108
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=82.65 E-value=0.18 Score=35.64 Aligned_cols=45 Identities=31% Similarity=0.631 Sum_probs=29.2
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhc----C-CCCCCccCC
Q 026690 189 SCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG----H-ASCPLCRRD 234 (235)
Q Consensus 189 ~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~----~-~sCPlCR~~ 234 (235)
.|.||.+.-.. +.+...-.|...||..|+++-|.. . -.||.|+.+
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 46666655333 334444469999999999977653 2 469999863
No 109
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.46 E-value=0.27 Score=34.76 Aligned_cols=45 Identities=29% Similarity=0.564 Sum_probs=31.6
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhc-----CCCCCCccCC
Q 026690 189 SCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG-----HASCPLCRRD 234 (235)
Q Consensus 189 ~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~-----~~sCPlCR~~ 234 (235)
.|.||.+.-..+ .+...-.|...||..|+++=|.. .-.||.|+.+
T Consensus 28 ~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~d 77 (77)
T 2e6s_A 28 SCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 77 (77)
T ss_dssp SCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCCC
T ss_pred CCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccCc
Confidence 788998753333 34445569999999999966542 3469999753
No 110
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.60 E-value=0.11 Score=37.66 Aligned_cols=47 Identities=26% Similarity=0.524 Sum_probs=33.1
Q ss_pred CccCccccccccC-CCceeecCCCCCcccHhhHHHHHh--------cCCCCCCccC
Q 026690 187 RVSCSVCLQDFQL-GETARSLPHCHHMFHIPCIDKWLL--------GHASCPLCRR 233 (235)
Q Consensus 187 ~~~C~ICle~f~~-ge~v~~Lp~C~H~FH~~CI~~WL~--------~~~sCPlCR~ 233 (235)
+..|.||...-.. ++.+...-.|...||..|+.+-|. ..-.||.|+.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 4689999976432 234555567999999999987654 2335998853
No 111
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=81.50 E-value=0.3 Score=33.78 Aligned_cols=45 Identities=31% Similarity=0.631 Sum_probs=30.2
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhc-----CCCCCCccCC
Q 026690 189 SCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG-----HASCPLCRRD 234 (235)
Q Consensus 189 ~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~-----~~sCPlCR~~ 234 (235)
.|.||.+.-.. +.+...-.|...||..|+++=|.+ .-.||.|+.+
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 45677754322 334445569999999999966553 3469999864
No 112
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=81.06 E-value=1.8 Score=31.04 Aligned_cols=40 Identities=15% Similarity=0.388 Sum_probs=30.9
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHHHHhc
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG 224 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~ 224 (235)
.....|.+|.+.+++..-|..-..=+|.||-.|-...+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 3457899999999876655543344699999999999874
No 113
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=80.98 E-value=0.55 Score=35.34 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=23.6
Q ss_pred ccCccccccccC------CCceeecCCCCCcccHhhHHHH
Q 026690 188 VSCSVCLQDFQL------GETARSLPHCHHMFHIPCIDKW 221 (235)
Q Consensus 188 ~~C~ICle~f~~------ge~v~~Lp~C~H~FH~~CI~~W 221 (235)
..|.||+..-.. ++.......|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 469999876421 2344444559999999999865
No 114
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=80.22 E-value=0.57 Score=34.66 Aligned_cols=39 Identities=21% Similarity=0.487 Sum_probs=26.8
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
..||+|.++++........+.|.-.| +++.-||-|.++|
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f---------~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFI---------EMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEE---------EEEEECTTTCSBC
T ss_pred ccCccCCCcceecCCEEECccccchh---------hccccCcchhhHH
Confidence 68999999876433333344466654 4677899998875
No 115
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=79.43 E-value=0.45 Score=31.74 Aligned_cols=43 Identities=35% Similarity=0.718 Sum_probs=28.7
Q ss_pred CCccCccccccccCCCceeecCC--CC-CcccHhhHHHHHhc----CCCCCCccC
Q 026690 186 ERVSCSVCLQDFQLGETARSLPH--CH-HMFHIPCIDKWLLG----HASCPLCRR 233 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~--C~-H~FH~~CI~~WL~~----~~sCPlCR~ 233 (235)
+..-| ||.+... |+ ....-+ |. ..||..|+. |.. +-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34566 9988642 43 444445 66 699999998 443 346999975
No 116
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=78.00 E-value=0.52 Score=40.02 Aligned_cols=45 Identities=31% Similarity=0.620 Sum_probs=27.6
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhc-----CCCCCCccCC
Q 026690 189 SCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG-----HASCPLCRRD 234 (235)
Q Consensus 189 ~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~-----~~sCPlCR~~ 234 (235)
.|.+|.+.=..++ ....-.|...||..|+++=|.. .-.||.|+.+
T Consensus 176 ~C~vC~~~~~~~~-lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPDK-QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC--C-CEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCCC-eEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 5888876533333 4445569999999999976652 3359999764
No 117
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=76.73 E-value=1.5 Score=29.45 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=31.0
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCc
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLC 231 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlC 231 (235)
..|--|+..|.. ......|+|++.|+.+|=.---..=.+||-|
T Consensus 16 ~~C~~C~~~~~~-~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKD-QHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTT-SEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCC-CccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 459999999963 2235578899999999954333344579988
No 118
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=75.17 E-value=1.3 Score=33.15 Aligned_cols=43 Identities=23% Similarity=0.471 Sum_probs=27.3
Q ss_pred CCCccCccccccccCCCceeec-CCCCCcccHhhHHHHHhcC----CCCCCcc
Q 026690 185 GERVSCSVCLQDFQLGETARSL-PHCHHMFHIPCIDKWLLGH----ASCPLCR 232 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~L-p~C~H~FH~~CI~~WL~~~----~sCPlCR 232 (235)
.++..|.+|.+ .|+.+..- +.|...||..|+. |... -.||-|+
T Consensus 13 ~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 13 MHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp SSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCCCCCcCCC---CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 34568999983 34433332 1499999999998 5532 2477553
No 119
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=74.12 E-value=1.5 Score=31.26 Aligned_cols=39 Identities=28% Similarity=0.645 Sum_probs=24.3
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
..||.|.+++..+......+.|+-.| ..+.-||-|.++|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~~---------~~~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKDF---------SLQALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCEE---------EEEEECSSSCSCC
T ss_pred CCCCCCCCccccCCCceECccccccC---------CCcccCcchhhHH
Confidence 46888888877655554455566544 2444677776654
No 120
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.00 E-value=1.8 Score=29.96 Aligned_cols=37 Identities=22% Similarity=0.673 Sum_probs=25.5
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCC
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRD 234 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 234 (235)
...|+-|-+.+..++.+..+ +..||.+|+. |-.|+.+
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~---~~~wH~~CF~--------C~~C~~~ 51 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLAL---DKQWHVSCFK--------CQTCSVI 51 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEET---TEEECTTTCB--------CSSSCCB
T ss_pred CCCCcCcCCeeCCCeEEEEC---CcccccccCC--------cCcCCCC
Confidence 45799998888776665543 6788877754 6666554
No 121
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=73.85 E-value=2.3 Score=29.94 Aligned_cols=36 Identities=22% Similarity=0.586 Sum_probs=27.5
Q ss_pred CCccCccccccccCCCceeecCCCCCcccHhhHHHH
Q 026690 186 ERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKW 221 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~W 221 (235)
+...|.+|...|..-..-...-.||++|+..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 346899999999865544455569999999997643
No 122
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=72.99 E-value=0.58 Score=31.24 Aligned_cols=43 Identities=33% Similarity=0.703 Sum_probs=28.0
Q ss_pred CCccCccccccccCCCceeecCC--CC-CcccHhhHHHHHhc----CCCCCCccC
Q 026690 186 ERVSCSVCLQDFQLGETARSLPH--CH-HMFHIPCIDKWLLG----HASCPLCRR 233 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~--C~-H~FH~~CI~~WL~~----~~sCPlCR~ 233 (235)
+..-| ||.+... ++ ....-+ |. ..||..|+. |.. +-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34556 9988642 33 444445 55 689999998 543 346999965
No 123
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.73 E-value=1.5 Score=29.33 Aligned_cols=28 Identities=18% Similarity=0.440 Sum_probs=12.5
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhH
Q 026690 189 SCSVCLQDFQLGETARSLPHCHHMFHIPCI 218 (235)
Q Consensus 189 ~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI 218 (235)
.|+.|-+.+..++.+... -+..||.+|.
T Consensus 7 ~C~~C~~~I~~~~~~~~a--~~~~~H~~CF 34 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEY--KGSSWHETCF 34 (72)
T ss_dssp CBSSSCCCCCSSSCEEEE--TTEEEETTTT
T ss_pred CCccCCCcccCCceEEEE--CcCeecccCC
Confidence 455555555543322222 2445554443
No 124
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=72.40 E-value=2.7 Score=29.74 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=27.7
Q ss_pred CCccCccccccccCCCceeecCCCCCcccHhhHHHH
Q 026690 186 ERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKW 221 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~W 221 (235)
+...|.+|...|..-..-...-.||++|+..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 346899999999865544445569999999997654
No 125
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=72.36 E-value=0.66 Score=31.26 Aligned_cols=43 Identities=37% Similarity=0.777 Sum_probs=28.2
Q ss_pred CCccCccccccccCCCceeecCC--CC-CcccHhhHHHHHh----cCCCCCCccC
Q 026690 186 ERVSCSVCLQDFQLGETARSLPH--CH-HMFHIPCIDKWLL----GHASCPLCRR 233 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~--C~-H~FH~~CI~~WL~----~~~sCPlCR~ 233 (235)
+..-| ||.+... |+ ....-+ |. ..||..|+. |. .+-.||.|+.
T Consensus 10 e~~yC-~C~~~~~-g~-MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-GE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC-CC-eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34556 9988632 43 444445 54 899999998 33 2446999975
No 126
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.30 E-value=1.9 Score=28.81 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=20.5
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCC
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHA 226 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~ 226 (235)
..|..|...+. ++..... =+..||..|-.+-+.+..
T Consensus 34 F~C~~C~~~L~-~~~~~~~--~~~~yC~~cy~~~~~~~~ 69 (72)
T 1x61_A 34 FVCSTCRAQLR-GQHFYAV--ERRAYCEGCYVATLESGP 69 (72)
T ss_dssp CBCSSSCCBCT-TSCEEES--SSCEEEHHHHHHHHHTCS
T ss_pred CcccccCCcCC-cCcCEee--CCeEECHHHHHHHHccCC
Confidence 46777777763 2322222 366777777776665433
No 127
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.22 E-value=2 Score=29.02 Aligned_cols=31 Identities=19% Similarity=0.454 Sum_probs=19.4
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHH
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCID 219 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~ 219 (235)
...|+-|-+.+..++.+... -+..||..|..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF~ 41 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCFV 41 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTTCC
T ss_pred CCCchhcCCccCCCceEEEe--CccEeccccCe
Confidence 35788888887755554332 36677776653
No 128
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=71.80 E-value=2.7 Score=30.09 Aligned_cols=36 Identities=22% Similarity=0.436 Sum_probs=27.1
Q ss_pred CCCccCccccccccCCCceeecCCCCCcccHhhHHH
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDK 220 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~ 220 (235)
.+...|.+|...|..-..-...-.||++|+..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 445689999999986544444556999999999754
No 129
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=71.74 E-value=2.1 Score=33.28 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=26.0
Q ss_pred CCccCcccccccc-CCCceeecCCCCCcccHhhHH
Q 026690 186 ERVSCSVCLQDFQ-LGETARSLPHCHHMFHIPCID 219 (235)
Q Consensus 186 e~~~C~ICle~f~-~ge~v~~Lp~C~H~FH~~CI~ 219 (235)
....|.+|.+.|. .+..-+....|+|.+|..|=.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 3468999999994 444456666799999999854
No 130
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=71.65 E-value=8.4 Score=27.96 Aligned_cols=47 Identities=21% Similarity=0.487 Sum_probs=34.5
Q ss_pred ccCccccccccCC---CceeecCCCCCcccHhhHHHHHh-cCCCCCCccCC
Q 026690 188 VSCSVCLQDFQLG---ETARSLPHCHHMFHIPCIDKWLL-GHASCPLCRRD 234 (235)
Q Consensus 188 ~~C~ICle~f~~g---e~v~~Lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~ 234 (235)
..|.||-+++... +.......|+--.|..|.+-=.+ .+.+||-|+..
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktr 67 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTR 67 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCc
Confidence 5899999996533 33344445888999999985443 67789999864
No 131
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.56 E-value=1.7 Score=29.51 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=17.9
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHH
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCID 219 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~ 219 (235)
..|+.|-+.+..++.+.. -+..||.+|..
T Consensus 10 ~~C~~C~~~I~~~~~v~a---~~~~~H~~CF~ 38 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSS---LGKDWHKFCLK 38 (76)
T ss_dssp CBCTTTCCBCCTTTEEEE---TTEEEETTTCB
T ss_pred CCCcCCCCEeECCeEEEE---CCeEeeCCCCC
Confidence 467777777776555443 35677766643
No 132
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=71.15 E-value=0.9 Score=42.71 Aligned_cols=45 Identities=27% Similarity=0.534 Sum_probs=31.2
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHh-----cCCCCCCccC
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLL-----GHASCPLCRR 233 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~ 233 (235)
.-| ||.+.+..+.....+-.|.--||..|+.---. .+-.||.|+.
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 445 99998765555555556999999999853211 2346999963
No 133
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=71.08 E-value=3 Score=28.68 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=25.5
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHH
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCIDK 220 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~ 220 (235)
..|.+|...|..-..-...-.||++|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999999986544444556999999999754
No 134
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.99 E-value=1.5 Score=29.31 Aligned_cols=28 Identities=21% Similarity=0.471 Sum_probs=12.6
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhH
Q 026690 189 SCSVCLQDFQLGETARSLPHCHHMFHIPCI 218 (235)
Q Consensus 189 ~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI 218 (235)
.|+-|-+.+..++.+... -+..||.+|.
T Consensus 7 ~C~~C~~~I~~~~~~~~a--~~~~~H~~CF 34 (72)
T 1wyh_A 7 GCSACGETVMPGSRKLEY--GGQTWHEHCF 34 (72)
T ss_dssp BCSSSCCBCCSSSCEECS--TTCCEETTTC
T ss_pred CCccCCCccccCccEEEE--CccccCcccC
Confidence 455555555543222211 2455555443
No 135
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=70.69 E-value=2.3 Score=30.53 Aligned_cols=36 Identities=17% Similarity=0.397 Sum_probs=27.8
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHHHHH
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWL 222 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL 222 (235)
...|.+|...|..-..-.....||++|+..|...+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 357999999998655445556799999999977553
No 136
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=69.57 E-value=0.6 Score=34.71 Aligned_cols=44 Identities=20% Similarity=0.403 Sum_probs=29.7
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCCCccC
Q 026690 189 SCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG----HASCPLCRR 233 (235)
Q Consensus 189 ~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~ 233 (235)
.|.||.+.-.. +.+.....|...||..|+++=|.. .-.||.|+.
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 46777665332 345555569999999999876553 335888854
No 137
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.50 E-value=2.4 Score=28.33 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=13.7
Q ss_pred ccCccccccccC--CCceeecCCCCCcccHhhH
Q 026690 188 VSCSVCLQDFQL--GETARSLPHCHHMFHIPCI 218 (235)
Q Consensus 188 ~~C~ICle~f~~--ge~v~~Lp~C~H~FH~~CI 218 (235)
..|+-|-+.+.. ++.+... -+..||.+|+
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~CF 36 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISF--EERQWHNDCF 36 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEEC--SSCEECTTTC
T ss_pred CCCcCCCccccCCCCcceEEE--CCcccCcccC
Confidence 356666666553 2222221 3555665554
No 138
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.85 E-value=2.1 Score=29.33 Aligned_cols=29 Identities=17% Similarity=0.497 Sum_probs=16.3
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhH
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCI 218 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI 218 (235)
..|+.|-+.+..++.+... =+..||.+|.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF 44 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEY--KGTVWHKDCF 44 (82)
T ss_dssp CBCSSSCCBCCSSSCEEEC--SSCEEETTTC
T ss_pred CcCccCCcccccCceEEEE--CccccccccC
Confidence 4577777766655543322 3566666554
No 139
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=68.80 E-value=1.2 Score=30.25 Aligned_cols=42 Identities=12% Similarity=0.102 Sum_probs=25.1
Q ss_pred CccCccccccccCCCceeecCCCCCcccH-hhHHHHHhcCCCCCCccC
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHI-PCIDKWLLGHASCPLCRR 233 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~-~CI~~WL~~~~sCPlCR~ 233 (235)
=..|..|...+..+. .... =+..|+. .|..+- -...|--|..
T Consensus 27 CF~C~~C~~~L~~~~-~~~~--~g~~yC~~~cy~~~--f~~~C~~C~~ 69 (76)
T 1iml_A 27 CLKCEKCGKTLTSGG-HAEH--EGKPYCNHPCYSAM--FGPKGFGRGG 69 (76)
T ss_dssp TCBCTTTCCBCCTTT-EEEE--TTEEEETTTHHHHH--SSCCCSSCCC
T ss_pred CCCccccCccCCCCc-eECc--CCeEeeCHHHHHHH--hCccCCCcCC
Confidence 357888888877653 2222 3677777 577553 3445666643
No 140
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=68.60 E-value=2.4 Score=35.18 Aligned_cols=35 Identities=20% Similarity=0.460 Sum_probs=27.2
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHHHH
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKW 221 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~W 221 (235)
+..|.+|...|..-..-...-.||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 46899999999865544555679999999997654
No 141
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=68.48 E-value=2.7 Score=32.06 Aligned_cols=35 Identities=20% Similarity=0.457 Sum_probs=26.9
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHHHH
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKW 221 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~W 221 (235)
...|.+|...|..-..-...-.||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 35799999999865444455569999999997654
No 142
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=68.21 E-value=3.4 Score=27.21 Aligned_cols=30 Identities=20% Similarity=0.501 Sum_probs=21.2
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhH
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCI 218 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI 218 (235)
...|+-|-+.+..++.+... =+..||..|.
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF 40 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF 40 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC
Confidence 35788998888876655433 3677888776
No 143
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.16 E-value=3.6 Score=29.03 Aligned_cols=35 Identities=23% Similarity=0.449 Sum_probs=26.1
Q ss_pred CCccCccccccccCCCceeecCCCCCcccHhhHHH
Q 026690 186 ERVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDK 220 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~ 220 (235)
+...|.+|...|..-..-...-.||++|+..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34689999999976443344456999999999654
No 144
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=67.45 E-value=5.3 Score=36.20 Aligned_cols=44 Identities=23% Similarity=0.604 Sum_probs=29.1
Q ss_pred ccCccccccccCCCceeecCCCCCc--ccHhhHHHHHh--cCCCCCCccCC
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHM--FHIPCIDKWLL--GHASCPLCRRD 234 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~--FH~~CI~~WL~--~~~sCPlCR~~ 234 (235)
..||+=...++. .+|-.. |.|. |-..=+..... ....||+|.+.
T Consensus 250 L~CPlS~~ri~~--PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~ 297 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQID 297 (371)
T ss_dssp SBCTTTSSBCSS--EEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCB
T ss_pred ecCCCccccccc--cCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcc
Confidence 579998888764 456555 9998 55443333333 24469999875
No 145
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=66.91 E-value=2.8 Score=35.08 Aligned_cols=35 Identities=20% Similarity=0.462 Sum_probs=27.6
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHHHH
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKW 221 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~W 221 (235)
+..|.+|...|..-..-.....||++||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 35899999999865554556679999999997654
No 146
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=66.86 E-value=1.5 Score=30.31 Aligned_cols=45 Identities=20% Similarity=0.429 Sum_probs=30.8
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHh-----cCCCCCCccC
Q 026690 189 SCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLL-----GHASCPLCRR 233 (235)
Q Consensus 189 ~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~ 233 (235)
.-.||...+..++.....-.|.--||..|+.---. .+-.||.|+.
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 34499988765555555556999999999963321 2456999863
No 147
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.18 E-value=3.5 Score=28.53 Aligned_cols=31 Identities=23% Similarity=0.451 Sum_probs=22.1
Q ss_pred CCccCccccccccCCCceeecCCCCCcccHhhHH
Q 026690 186 ERVSCSVCLQDFQLGETARSLPHCHHMFHIPCID 219 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~ 219 (235)
....|+.|-+.+..++.+.. -+..||..|+.
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~CF~ 44 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSCFR 44 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTTCB
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCcCE
Confidence 34679999998876666553 46788887754
No 148
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=65.63 E-value=6.1 Score=35.66 Aligned_cols=44 Identities=18% Similarity=0.498 Sum_probs=29.3
Q ss_pred ccCccccccccCCCceeecCCCCCc--ccHhhHHHHHhc--CCCCCCccCC
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHM--FHIPCIDKWLLG--HASCPLCRRD 234 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~--FH~~CI~~WL~~--~~sCPlCR~~ 234 (235)
..|||=...++. .+|-.. |.|. |-..=+.....+ ...||+|.+.
T Consensus 216 L~CPlS~~ri~~--P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~ 263 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKK 263 (360)
T ss_dssp SBCTTTCSBCSS--EEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSB
T ss_pred eeCCCccceecc--CCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcc
Confidence 579999888864 455555 9998 664443333333 3469999875
No 149
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=64.55 E-value=0.91 Score=29.22 Aligned_cols=43 Identities=23% Similarity=0.569 Sum_probs=28.7
Q ss_pred ccccccccCCCceeecCCCCCcccHhhHHHHH---hcCCCCCCccCC
Q 026690 191 SVCLQDFQLGETARSLPHCHHMFHIPCIDKWL---LGHASCPLCRRD 234 (235)
Q Consensus 191 ~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL---~~~~sCPlCR~~ 234 (235)
.||.+... ++......+|+.-||..|+.--- ..+-.||.|+.+
T Consensus 7 C~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~S 52 (52)
T 3o7a_A 7 CFCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 52 (52)
T ss_dssp STTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHTC
T ss_pred EEeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCCc
Confidence 37877665 43444445599999999986322 234579999753
No 150
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=63.48 E-value=0.73 Score=34.62 Aligned_cols=44 Identities=23% Similarity=0.465 Sum_probs=30.0
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCCCccC
Q 026690 189 SCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG----HASCPLCRR 233 (235)
Q Consensus 189 ~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~ 233 (235)
.|.||.+.-..++ +...-.|...||..|+.+=|.. .-.||.|+.
T Consensus 60 ~C~~C~~~~~~~~-ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 60 SCILCGTSENDDQ-LLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCTTTTCCTTTTT-EEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCcccccCCCCc-eEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 5888877544334 4444469999999999975543 335988854
No 151
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=63.42 E-value=0.95 Score=34.65 Aligned_cols=45 Identities=24% Similarity=0.507 Sum_probs=28.8
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCc
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLC 231 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlC 231 (235)
...|..|...|..-..-...-+||++||..|..........|-.|
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 357999999998644444455699999999976554434444444
No 152
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=63.29 E-value=4.9 Score=27.54 Aligned_cols=33 Identities=21% Similarity=0.480 Sum_probs=26.2
Q ss_pred CCCCccCccccccccCCCceeecCCC-CCcccHhhHHHH
Q 026690 184 SGERVSCSVCLQDFQLGETARSLPHC-HHMFHIPCIDKW 221 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~Lp~C-~H~FH~~CI~~W 221 (235)
.++..-|.||.++-. ++.+. | +-.||..|..+-
T Consensus 5 ~ee~pWC~ICneDAt----lrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNEDAT----LRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSCCC----EEETT-TTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCCCe----EEecC-CCCceehHHHHHHH
Confidence 355678999999843 77777 9 899999998764
No 153
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=62.53 E-value=4.2 Score=32.24 Aligned_cols=33 Identities=24% Similarity=0.571 Sum_probs=24.5
Q ss_pred CCccCccccccccC-CCceeecCCCCCcccHhhH
Q 026690 186 ERVSCSVCLQDFQL-GETARSLPHCHHMFHIPCI 218 (235)
Q Consensus 186 e~~~C~ICle~f~~-ge~v~~Lp~C~H~FH~~CI 218 (235)
.+..|.+|...|.- ...-.....|+|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 35789999998752 2334455669999999996
No 154
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.25 E-value=3.2 Score=28.10 Aligned_cols=30 Identities=17% Similarity=0.444 Sum_probs=16.8
Q ss_pred ccCccccccccC--CCceeecCCCCCcccHhhHH
Q 026690 188 VSCSVCLQDFQL--GETARSLPHCHHMFHIPCID 219 (235)
Q Consensus 188 ~~C~ICle~f~~--ge~v~~Lp~C~H~FH~~CI~ 219 (235)
..|+.|-+.+.. ++.+... -+..||.+|+.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~CF~ 37 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF--QDSQWHSECFN 37 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE--TTEEEEGGGCB
T ss_pred CCCccCCCcccCCCCceeEEE--CCcccCcccCC
Confidence 467777777664 2222222 46677776653
No 155
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=61.25 E-value=1.8 Score=31.40 Aligned_cols=44 Identities=27% Similarity=0.540 Sum_probs=27.6
Q ss_pred CCCccCccccccccCCCceeecCCCC---CcccHhhHHHHHh----cCCCCCC-ccC
Q 026690 185 GERVSCSVCLQDFQLGETARSLPHCH---HMFHIPCIDKWLL----GHASCPL-CRR 233 (235)
Q Consensus 185 ~e~~~C~ICle~f~~ge~v~~Lp~C~---H~FH~~CI~~WL~----~~~sCPl-CR~ 233 (235)
++..-| ||.+... ++. ...-+|. ..||..|+. |. .+-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~M-I~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GPM-VACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SSE-ECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CCE-EEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 344567 9987533 443 3344455 789999986 33 2446999 863
No 156
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=59.89 E-value=1.7 Score=32.49 Aligned_cols=22 Identities=23% Similarity=0.664 Sum_probs=14.5
Q ss_pred CCCCcccHhhHHHHHhcCCCCCCccCC
Q 026690 208 HCHHMFHIPCIDKWLLGHASCPLCRRD 234 (235)
Q Consensus 208 ~C~H~FH~~CI~~WL~~~~sCPlCR~~ 234 (235)
+||+.| .+=+.+...||.|+.+
T Consensus 72 ~CG~~F-----~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 72 KCGFVF-----KAEINIPSRCPKCKSE 93 (105)
T ss_dssp TTCCBC-----CCCSSCCSSCSSSCCC
T ss_pred hCcCee-----cccCCCCCCCcCCCCC
Confidence 388888 1122355689999874
No 157
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.92 E-value=5.4 Score=27.30 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=14.4
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhH
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCI 218 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI 218 (235)
..|+-|-+.+. ++.+.. -+..||.+|.
T Consensus 16 ~~C~~C~~~I~-~~~v~a---~~~~~H~~CF 42 (79)
T 2cor_A 16 YICQKCHAIID-EQPLIF---KNDPYHPDHF 42 (79)
T ss_dssp CBCTTTCCBCC-SCCCCC---SSSCCCTTTS
T ss_pred CCCccCCCEec-ceEEEE---CcceeCCCCC
Confidence 45777766665 333222 3556666553
No 158
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.09 E-value=4.8 Score=26.58 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=5.1
Q ss_pred CCcccHhhHHH
Q 026690 210 HHMFHIPCIDK 220 (235)
Q Consensus 210 ~H~FH~~CI~~ 220 (235)
+..||..|..+
T Consensus 51 g~~yC~~c~~~ 61 (70)
T 2d8x_A 51 GRHLCRPCHNR 61 (70)
T ss_dssp TEEECHHHHHH
T ss_pred CeEECHHHhhh
Confidence 44444444443
No 159
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=58.01 E-value=1.9 Score=29.67 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=13.4
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhH
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCI 218 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI 218 (235)
..|+.|-+.+..++.+.. -+..||.+|.
T Consensus 8 ~~C~~C~~~I~~~~~~~a---~~~~~H~~CF 35 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQC---DGRSFHRCCF 35 (81)
T ss_dssp CBCSSSCCBCSSTTEEEE---TTEEEESSSE
T ss_pred CcCcCcCccccCceeEEe---CCcccccccC
Confidence 346666555554443322 3445555443
No 160
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=57.47 E-value=9.4 Score=30.52 Aligned_cols=38 Identities=21% Similarity=0.524 Sum_probs=28.1
Q ss_pred CCCCCCccCccccccccCCCceeecC--CCCCcccHhhHHHHHh
Q 026690 182 DASGERVSCSVCLQDFQLGETARSLP--HCHHMFHIPCIDKWLL 223 (235)
Q Consensus 182 ~~~~e~~~C~ICle~f~~ge~v~~Lp--~C~H~FH~~CI~~WL~ 223 (235)
+..+.+.-|.||-+. ..+.... .|...||..||+.++.
T Consensus 74 DeDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp CTTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 334556789999863 3455444 5999999999999974
No 161
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=56.19 E-value=6.2 Score=22.10 Aligned_cols=14 Identities=29% Similarity=0.864 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhhc
Q 026690 52 VGTLLGAMTGALIG 65 (235)
Q Consensus 52 ~g~~~ga~~ga~~g 65 (235)
+|++||+.-|-+.|
T Consensus 9 AGaVvGglGgy~lg 22 (27)
T 2lbg_A 9 AGAVVGGLGGYMLG 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHH
Confidence 45555555544444
No 162
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.90 E-value=4.2 Score=27.80 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=15.6
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhH
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCI 218 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI 218 (235)
..|+-|-+.+..++.+... =+..||..|.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF 44 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFY--EDRHFHEGCF 44 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCC--SSCCCBTTTS
T ss_pred CcCccCCCccccCcEEEEe--CCccccccCC
Confidence 3577777776643333222 2566666554
No 163
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=54.99 E-value=5.8 Score=28.10 Aligned_cols=43 Identities=19% Similarity=0.434 Sum_probs=24.9
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
..|..|...+.. +..... =+..|+..|-.+ .-...|..|.++|
T Consensus 34 F~C~~C~~~L~~-~~~~~~--~g~~yC~~cy~~--~~~~~C~~C~~~I 76 (101)
T 2cup_A 34 FRCAKCLHPLAN-ETFVAK--DNKILCNKCTTR--EDSPKCKGCFKAI 76 (101)
T ss_dssp CCCSSSCCCTTS-SCCEEE--TTEEECHHHHTT--CCCCBCSSSCCBC
T ss_pred CcccccCCCCCc-CeeECc--CCEEEChhHhhh--hcCCccccCCCcc
Confidence 567777777743 222222 356777666543 2345788887654
No 164
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=54.00 E-value=4.2 Score=30.34 Aligned_cols=34 Identities=18% Similarity=0.451 Sum_probs=20.8
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHh
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLL 223 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~ 223 (235)
..|..|...+..++..... =+..||..|..+.+.
T Consensus 37 F~C~~C~~~L~~g~~f~~~--~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLLI--NSDIVCEQDIYEWTK 70 (123)
T ss_dssp CBCTTTCCBCCTTCEEEEC--SSSEEEGGGHHHHHH
T ss_pred CccccCCCCCCCCCcEEee--CCEEEcHHHhHHHhc
Confidence 4677777777555544333 366777777766654
No 165
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=53.58 E-value=14 Score=33.54 Aligned_cols=45 Identities=27% Similarity=0.580 Sum_probs=32.3
Q ss_pred CCCCccCccccccccCCCceeecC--CCCCcccHhhHHHHHh----------cCCCCCCcc
Q 026690 184 SGERVSCSVCLQDFQLGETARSLP--HCHHMFHIPCIDKWLL----------GHASCPLCR 232 (235)
Q Consensus 184 ~~e~~~C~ICle~f~~ge~v~~Lp--~C~H~FH~~CI~~WL~----------~~~sCPlCR 232 (235)
.+.+..|.+|-+. .++.... .|...||..||+.++- .+-.|=+|.
T Consensus 90 DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~ 146 (386)
T 2pv0_B 90 DGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCL 146 (386)
T ss_dssp SSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTS
T ss_pred CCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcC
Confidence 4456789999864 3344444 6999999999999983 234687775
No 166
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=53.40 E-value=2.8 Score=37.79 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=0.0
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHHHHH
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWL 222 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL 222 (235)
...|.+|...|..-..-.....||++||..|-..+.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 357999999998544434455699999999998765
No 167
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=52.92 E-value=6.3 Score=22.44 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=21.6
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhH
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCI 218 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI 218 (235)
..|+.|-...-..|.+.. =+..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE---CCeEecccCC
Confidence 479999999877666554 4789999883
No 168
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.86 E-value=12 Score=26.31 Aligned_cols=33 Identities=18% Similarity=0.510 Sum_probs=24.5
Q ss_pred CCCccCcccccccc-CCCceeecCCCCCcccHhh
Q 026690 185 GERVSCSVCLQDFQ-LGETARSLPHCHHMFHIPC 217 (235)
Q Consensus 185 ~e~~~C~ICle~f~-~ge~v~~Lp~C~H~FH~~C 217 (235)
..+..|..|.+.|- ..+.-...+.|+|..+..|
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 44578999999976 2334455667999999888
No 169
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=51.86 E-value=3.1 Score=33.14 Aligned_cols=14 Identities=50% Similarity=0.935 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHhhc
Q 026690 52 VGTLLGAMTGALIG 65 (235)
Q Consensus 52 ~g~~~ga~~ga~~g 65 (235)
.|+++||.+||++|
T Consensus 4 ~ga~~ga~~g~~~g 17 (169)
T 3ldt_A 4 SGTLIGAAAGGTVG 17 (169)
T ss_dssp -------------C
T ss_pred HHHHHHHHHHHHHH
Confidence 44445444444443
No 170
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=51.83 E-value=7.1 Score=31.31 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=13.2
Q ss_pred eeecCCCCCcccHhhHHHHHhcCCCCCCccC
Q 026690 203 ARSLPHCHHMFHIPCIDKWLLGHASCPLCRR 233 (235)
Q Consensus 203 v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~ 233 (235)
..+.+.|||++-. .-...||+|..
T Consensus 138 ~~~C~~CG~i~~~-------~~p~~CP~Cg~ 161 (170)
T 3pwf_A 138 VYICPICGYTAVD-------EAPEYCPVCGA 161 (170)
T ss_dssp EEECTTTCCEEES-------CCCSBCTTTCC
T ss_pred eeEeCCCCCeeCC-------CCCCCCCCCCC
Confidence 3445556766641 22337888865
No 171
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.47 E-value=8.3 Score=26.18 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=18.9
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHH
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCID 219 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~ 219 (235)
...|+-|-+.+.. +.+. . -+..||.+|+.
T Consensus 15 ~~~C~~C~~~I~~-~~~~--a-~~~~~H~~CF~ 43 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFVK--L-RDRHRHPECYV 43 (79)
T ss_dssp CCCCSSSCCCCCS-SCEE--C-SSCEECTTTTS
T ss_pred CCccccCCCCccC-cEEE--E-CcceeCcCcCe
Confidence 4578888888774 3222 2 56788887753
No 172
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=51.39 E-value=7 Score=23.95 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhcccccccchh
Q 026690 51 LVGTLLGAMTGALIGQETESGFVR 74 (235)
Q Consensus 51 ~~g~~~ga~~ga~~g~~~~~g~~~ 74 (235)
.+|.++++++||+++....|-+-|
T Consensus 15 aG~vvvv~i~~ali~VSq~D~v~R 38 (39)
T 3arc_X 15 SGAVVLGLTFAVLIAISQIDKVQR 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHheeEeccCcccc
Confidence 356667888888887766555443
No 173
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=51.06 E-value=5.6 Score=26.75 Aligned_cols=30 Identities=17% Similarity=0.359 Sum_probs=18.1
Q ss_pred ccCccccccccC---CCceeecCCCCCcccHhhHH
Q 026690 188 VSCSVCLQDFQL---GETARSLPHCHHMFHIPCID 219 (235)
Q Consensus 188 ~~C~ICle~f~~---ge~v~~Lp~C~H~FH~~CI~ 219 (235)
..|+-|-+.+.. ++..... =+..||..|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~CF~ 48 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY--EGQSWHDYCFH 48 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE--TTEEEETTTCB
T ss_pred ccCcccCCcccCCCCCceeEEE--CcceeCcccCE
Confidence 468888888774 2222222 36778877753
No 174
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=50.53 E-value=3 Score=29.19 Aligned_cols=40 Identities=18% Similarity=0.413 Sum_probs=25.4
Q ss_pred ccCcc--ccccccC--CCceeecC-----CCCCcccHhhHHHHHhcCCCCC
Q 026690 188 VSCSV--CLQDFQL--GETARSLP-----HCHHMFHIPCIDKWLLGHASCP 229 (235)
Q Consensus 188 ~~C~I--Cle~f~~--ge~v~~Lp-----~C~H~FH~~CI~~WL~~~~sCP 229 (235)
.-||- |-..+.. +......| .|+|.|+..|-..|=. .+|.
T Consensus 26 ~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 26 VLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCSS
T ss_pred EECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Cccc
Confidence 45665 5544332 22334555 6999999999999844 5564
No 175
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.21 E-value=7.4 Score=27.15 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=16.7
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHH
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCID 219 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~ 219 (235)
...|+-|-+.+. ++.+.. -+..||.+|+.
T Consensus 25 ~~~C~~C~~~I~-~~~v~a---~~~~~H~~CF~ 53 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLVA---LGKSWHPEEFN 53 (90)
T ss_dssp CCBBSSSCCBCC-SCEEEE---TTEEECTTTCB
T ss_pred CCCCccCCCEec-ceEEEE---CCccccccCCc
Confidence 346777777764 333322 46677766653
No 176
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.15 E-value=6.9 Score=27.40 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=11.8
Q ss_pred cCccccccccCCCceeecCCCCCcccHhh
Q 026690 189 SCSVCLQDFQLGETARSLPHCHHMFHIPC 217 (235)
Q Consensus 189 ~C~ICle~f~~ge~v~~Lp~C~H~FH~~C 217 (235)
.|+-|-+.+..++.+. . -+..||..|
T Consensus 17 ~C~~C~~~I~~~~~v~--a-~~~~~H~~C 42 (91)
T 2d8y_A 17 TCVECQKTVYPMERLL--A-NQQVFHISC 42 (91)
T ss_dssp BCTTTCCBCCTTSEEE--C-SSSEEETTT
T ss_pred cCccCCCccCCceeEE--E-CCCEECCCC
Confidence 4555555554433332 1 344555444
No 177
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=49.45 E-value=1.5 Score=32.60 Aligned_cols=45 Identities=13% Similarity=0.227 Sum_probs=29.1
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHh--------cCCCCCCccC
Q 026690 189 SCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLL--------GHASCPLCRR 233 (235)
Q Consensus 189 ~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~--------~~~sCPlCR~ 233 (235)
.|..|.++...++.......|.+.||..|...... ....||.|+.
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 45555555554455666677999999999875322 1235999975
No 178
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=48.34 E-value=14 Score=27.34 Aligned_cols=46 Identities=9% Similarity=0.034 Sum_probs=29.7
Q ss_pred ccCccccccccC-CCceeecCCCCCcccHhhHHHHHhcCCCCCCccCCC
Q 026690 188 VSCSVCLQDFQL-GETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 235 (235)
Q Consensus 188 ~~C~ICle~f~~-ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 235 (235)
..|..|...+.. +...... =+..||..|-.+-+..+..|-.|..+|
T Consensus 33 F~C~~C~~~L~~~~~~~~~~--~g~~yC~~cy~~~f~~~~~C~~C~~~I 79 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTK--SGMILCRNDYIRLFGNSGAGGSGGHMG 79 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEE--TTEEECHHHHHHHHCCCCSSSCSSCCS
T ss_pred CCcCCCCCcccccCCeEEEE--CCeeecHHHHHHHcCCCCccccCCCCc
Confidence 467788777752 2222222 467788888877666656788887764
No 179
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=48.04 E-value=10 Score=24.39 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhcccccccchh
Q 026690 51 LVGTLLGAMTGALIGQETESGFVR 74 (235)
Q Consensus 51 ~~g~~~ga~~ga~~g~~~~~g~~~ 74 (235)
.+|.++++++||+++....|-+-|
T Consensus 25 aG~vVvv~i~~aLi~VSq~D~v~R 48 (50)
T 3bz1_X 25 SGAVVLGLTFAVLIAISQIDKVQR 48 (50)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred HHHHHHHHHHHHheeeeccCcccc
Confidence 356678888899888877766655
No 180
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=46.84 E-value=4.7 Score=26.30 Aligned_cols=27 Identities=15% Similarity=0.471 Sum_probs=13.4
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhH
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCI 218 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI 218 (235)
..|+-|-+.+. ++.+. . -+..||.+|.
T Consensus 6 ~~C~~C~~~I~-~~~~~--a-~~~~~H~~CF 32 (66)
T 1nyp_A 6 PICGACRRPIE-GRVVN--A-MGKQWHVEHF 32 (66)
T ss_dssp CEETTTTEECC-SCEEC--C-TTSBEETTTC
T ss_pred CCCcccCCEec-ceEEE--E-CccccccCcC
Confidence 35666666655 33222 1 3456665553
No 181
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=46.62 E-value=8.9 Score=31.54 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=14.2
Q ss_pred eeecCCCCCcccHhhHHHHHhcCCCCCCccCC
Q 026690 203 ARSLPHCHHMFHIPCIDKWLLGHASCPLCRRD 234 (235)
Q Consensus 203 v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 234 (235)
..+++.|||++-- .....||+|..+
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 4445557777542 122478988753
No 182
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.47 E-value=10 Score=24.80 Aligned_cols=31 Identities=10% Similarity=0.438 Sum_probs=13.7
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHH
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKW 221 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~W 221 (235)
..|..|...+.. +..... =+..||..|..+.
T Consensus 32 F~C~~C~~~L~~-~~~~~~--~~~~yC~~cy~~~ 62 (69)
T 2cur_A 32 FVCVTCSKKLAG-QRFTAV--EDQYYCVDCYKNF 62 (69)
T ss_dssp TBCTTTCCBCTT-SCEEEC--SSCEEEHHHHHHH
T ss_pred CEECCCCCCCCC-CccEeE--CCEEECHHHhHHH
Confidence 345555555542 222111 2455555555443
No 183
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=45.48 E-value=4.1 Score=24.22 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=11.1
Q ss_pred CCccCccccccccC
Q 026690 186 ERVSCSVCLQDFQL 199 (235)
Q Consensus 186 e~~~C~ICle~f~~ 199 (235)
|...||||+.++..
T Consensus 4 EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 4 EGFICPQCMKSLGS 17 (34)
T ss_dssp EEEECTTTCCEESS
T ss_pred cccCCcHHHHHcCC
Confidence 34789999998875
No 184
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=45.39 E-value=3.5 Score=29.18 Aligned_cols=36 Identities=28% Similarity=0.751 Sum_probs=22.6
Q ss_pred CccccccccC--CCceeecCCCCCcccHhhHHHHHhcC
Q 026690 190 CSVCLQDFQL--GETARSLPHCHHMFHIPCIDKWLLGH 225 (235)
Q Consensus 190 C~ICle~f~~--ge~v~~Lp~C~H~FH~~CI~~WL~~~ 225 (235)
||=|-..+.. +......|.|+|.||..|-.+|=++|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H 65 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQH 65 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTT
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcC
Confidence 6655443322 22335567799999999988884443
No 185
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.33 E-value=9.3 Score=25.06 Aligned_cols=11 Identities=18% Similarity=0.791 Sum_probs=5.7
Q ss_pred ccCcccccccc
Q 026690 188 VSCSVCLQDFQ 198 (235)
Q Consensus 188 ~~C~ICle~f~ 198 (235)
..|..|...+.
T Consensus 32 F~C~~C~~~L~ 42 (70)
T 2d8z_A 32 FVCTACRKQLS 42 (70)
T ss_dssp SBCSSSCCBCT
T ss_pred CccCCCCCcCC
Confidence 34555555553
No 186
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=44.72 E-value=6.3 Score=29.63 Aligned_cols=37 Identities=16% Similarity=0.407 Sum_probs=24.9
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCC
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRD 234 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 234 (235)
...|+-|-+.+.....+.. -+..||..|+. |-.|+.+
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF~--------C~~C~~~ 97 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRCLK--------CSSCQAQ 97 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTTSB--------CTTTCCB
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccccC--------cCcCCCc
Confidence 3579999998875433433 57888888754 6666543
No 187
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=44.16 E-value=3.6 Score=32.73 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHHhhccc
Q 026690 50 ALVGTLLGAMTGALIGQE 67 (235)
Q Consensus 50 a~~g~~~ga~~ga~~g~~ 67 (235)
|+.|+.+|+++|+.+|.-
T Consensus 6 a~~ga~~g~~~g~~ig~~ 23 (169)
T 3ldt_A 6 TLIGAAAGGTVGLVASIY 23 (169)
T ss_dssp -----------CCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455777777777777754
No 188
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=43.79 E-value=15 Score=25.48 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=18.5
Q ss_pred CccCccccccccCCCceeecCCCCCcccHhhHH
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIPCID 219 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~ 219 (235)
...|.-|-+.+.. +.+. . -+..||.+|+.
T Consensus 25 ~~~C~~C~~~I~~-~~~~--a-~~~~~H~~CF~ 53 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVVK--A-RDKYRHPECFV 53 (89)
T ss_dssp CCBCTTTCCBCCS-CCEE--S-SSCEECTTTCC
T ss_pred CCCcccCCCEecc-cEEE--E-CCceECccCCE
Confidence 3578888888774 2222 2 56788877754
No 189
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.65 E-value=9.3 Score=25.96 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=14.2
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhH
Q 026690 189 SCSVCLQDFQLGETARSLPHCHHMFHIPCI 218 (235)
Q Consensus 189 ~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI 218 (235)
.|+-|-+.+. ++.+.. -+..||.+|.
T Consensus 17 ~C~~C~~~I~-~~~v~a---~~~~wH~~CF 42 (81)
T 1v6g_A 17 RCFSCDQFIE-GEVVSA---LGKTYHPDCF 42 (81)
T ss_dssp BCTTTCCBCC-SCCEEE---TTEEECTTTS
T ss_pred cCccccCEec-cceEEE---CCceeCccCC
Confidence 5777766665 333222 3566666554
No 190
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=43.62 E-value=12 Score=29.40 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=18.7
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhc
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLG 224 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~ 224 (235)
..|..|...+..|+...... =++.||..|..+-...
T Consensus 94 F~C~~C~~~L~~g~~f~~~~-~g~~~C~~c~~~~~~~ 129 (169)
T 2rgt_A 94 FACVVCKRQLATGDEFYLME-DSRLVCKADYETAKQG 129 (169)
T ss_dssp CBCTTTCCBCCTTCEEEECT-TSCEEEHHHHHHHHHC
T ss_pred CcCCCCCCCCCCCCceEEcc-CCeEECHHHHHHHhhc
Confidence 35666666655444432222 3556666666555443
No 191
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=43.49 E-value=4.8 Score=26.74 Aligned_cols=37 Identities=16% Similarity=0.425 Sum_probs=26.8
Q ss_pred ccCccccccccCCCcee--ecCC--CCCcccHhhHHHHHhc
Q 026690 188 VSCSVCLQDFQLGETAR--SLPH--CHHMFHIPCIDKWLLG 224 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~--~Lp~--C~H~FH~~CI~~WL~~ 224 (235)
..||-|...++..+.-. .... |+|.|+..|..+|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 47999988888665322 2223 8899999999999654
No 192
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=43.23 E-value=11 Score=24.71 Aligned_cols=28 Identities=14% Similarity=0.425 Sum_probs=19.3
Q ss_pred CCccCccccccccCCCceeecC--CCCCcc
Q 026690 186 ERVSCSVCLQDFQLGETARSLP--HCHHMF 213 (235)
Q Consensus 186 e~~~C~ICle~f~~ge~v~~Lp--~C~H~F 213 (235)
+-..||+|...++..+..-..+ .|++.|
T Consensus 9 ~iL~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 9 EILACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp TSCCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred hheeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 4568999999876544444445 688777
No 193
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.00 E-value=9.7 Score=25.52 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=17.8
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHH
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKW 221 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~W 221 (235)
..|..|...+..++..... =+..||..|-.+.
T Consensus 32 F~C~~C~~~L~~~~~f~~~--~~~~yC~~C~~~~ 63 (73)
T 1wig_A 32 ALCVRCGQMFAEGEEMYLQ--GSSIWHPACRQAA 63 (73)
T ss_dssp SCCSSSCCCCCSSCCCEEE--TTEEECTTHHHHT
T ss_pred CEeCCCCCCCCCCCeeEee--CCEEEChHHChHh
Confidence 4677777666644433322 2556666666553
No 194
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.95 E-value=7.7 Score=26.33 Aligned_cols=35 Identities=11% Similarity=0.274 Sum_probs=19.0
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHh
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLL 223 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~ 223 (235)
..|..|...+..++...... =+..||..|-.+-+.
T Consensus 42 F~C~~C~~~L~~g~~f~~~~-~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 42 FACMSCKVIIEDGDAYALVQ-HATLYCGKCHNEVVS 76 (81)
T ss_dssp CBCTTTCCBCCTTSCEEECS-SSCEEEHHHHHHHHC
T ss_pred CCccCCCCccCCCCcEEEee-CCEEECHHHHHHHhc
Confidence 45667766665544433112 356666666665443
No 195
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=41.51 E-value=19 Score=25.52 Aligned_cols=33 Identities=27% Similarity=0.746 Sum_probs=21.9
Q ss_pred CccCccccccccCCCcee-ecCCCCCcccHhhHHH
Q 026690 187 RVSCSVCLQDFQLGETAR-SLPHCHHMFHIPCIDK 220 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~-~Lp~C~H~FH~~CI~~ 220 (235)
...|.||.+.= .|-.+. ..++|.-.||..|-.+
T Consensus 17 ~l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 17 KLTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHHH
T ss_pred cCCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHHH
Confidence 35799997641 133332 2346999999999765
No 196
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=41.44 E-value=11 Score=29.83 Aligned_cols=10 Identities=30% Similarity=0.670 Sum_probs=4.3
Q ss_pred cCcccccccc
Q 026690 189 SCSVCLQDFQ 198 (235)
Q Consensus 189 ~C~ICle~f~ 198 (235)
.|..|...+.
T Consensus 89 ~C~~C~~~L~ 98 (182)
T 2jtn_A 89 KCSDCHVPLA 98 (182)
T ss_dssp SCTTTCCCCS
T ss_pred ccCCCCCccC
Confidence 4444444443
No 197
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=40.88 E-value=16 Score=27.00 Aligned_cols=27 Identities=19% Similarity=0.540 Sum_probs=14.5
Q ss_pred cCccccccccCCCceeecCCCCCcccHhh
Q 026690 189 SCSVCLQDFQLGETARSLPHCHHMFHIPC 217 (235)
Q Consensus 189 ~C~ICle~f~~ge~v~~Lp~C~H~FH~~C 217 (235)
.|..|-+.+...+.+... =++.||..|
T Consensus 68 ~C~~C~~~I~~~e~~~~a--~~~~~H~~C 94 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRV--KDKVYHLEC 94 (131)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEEEGGG
T ss_pred ChhhcCCccCccceeEee--CCceECccC
Confidence 566666666544433222 356666665
No 198
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=40.03 E-value=31 Score=31.29 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 026690 37 IGNIFSAIFTFFFALVGTLLGAMTGALIGQETE 69 (235)
Q Consensus 37 ~~~~~~~~~t~~fa~~g~~~ga~~ga~~g~~~~ 69 (235)
++=.++.-..+++|+.|+++|.+++.+.|...+
T Consensus 242 ~gi~i~S~~~al~Al~Gs~~g~~~a~~lg~~~~ 274 (384)
T 4ezc_A 242 GAILLSSPLMCLHAAIGSLLGIIAGLSLSAPFE 274 (384)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 333444455788999999999999988876543
No 199
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=39.34 E-value=12 Score=27.75 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=10.5
Q ss_pred cccHhhHHHHHh
Q 026690 212 MFHIPCIDKWLL 223 (235)
Q Consensus 212 ~FH~~CI~~WL~ 223 (235)
=||..|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 200
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=39.03 E-value=7.2 Score=30.64 Aligned_cols=8 Identities=38% Similarity=1.036 Sum_probs=4.6
Q ss_pred CCCCccCC
Q 026690 227 SCPLCRRD 234 (235)
Q Consensus 227 sCPlCR~~ 234 (235)
.||.|..+
T Consensus 150 ~Cp~CG~~ 157 (165)
T 2lcq_A 150 VCPDCGSK 157 (165)
T ss_dssp BCTTTCCB
T ss_pred cCCCCCCc
Confidence 56666543
No 201
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=38.94 E-value=12 Score=27.65 Aligned_cols=12 Identities=42% Similarity=1.043 Sum_probs=10.5
Q ss_pred cccHhhHHHHHh
Q 026690 212 MFHIPCIDKWLL 223 (235)
Q Consensus 212 ~FH~~CI~~WL~ 223 (235)
=||..|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 202
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=38.88 E-value=18 Score=28.86 Aligned_cols=28 Identities=25% Similarity=0.587 Sum_probs=17.4
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhH
Q 026690 189 SCSVCLQDFQLGETARSLPHCHHMFHIPCI 218 (235)
Q Consensus 189 ~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI 218 (235)
.|..|-+.+...+.+... -++.||..|.
T Consensus 71 ~C~~C~~~I~~~e~~i~a--~~~~~H~~CF 98 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA--QGNVYHLKCF 98 (188)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEECGGGC
T ss_pred ccccCCCccccCcEEEEc--CCCEEeCCCC
Confidence 577777777655543332 4677777773
No 203
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=38.47 E-value=9.6 Score=24.83 Aligned_cols=28 Identities=14% Similarity=0.383 Sum_probs=13.4
Q ss_pred cCccccccccCCCceeecCCCCCccc--HhhH
Q 026690 189 SCSVCLQDFQLGETARSLPHCHHMFH--IPCI 218 (235)
Q Consensus 189 ~C~ICle~f~~ge~v~~Lp~C~H~FH--~~CI 218 (235)
.|+-|-+.+..++..... -+..|| .+|.
T Consensus 4 ~C~~C~~~I~~~~~~v~a--~~~~wH~~~~CF 33 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTY--NNFSWHASTECF 33 (65)
T ss_dssp ECTTTSSEECTTSCEEEE--TTEEEETTTTTS
T ss_pred CCcCCCCeeccCceEEEE--CCCccCCCCCCE
Confidence 466666665543222211 255666 5553
No 204
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=37.54 E-value=11 Score=30.57 Aligned_cols=8 Identities=38% Similarity=1.107 Sum_probs=5.3
Q ss_pred CCCCccCC
Q 026690 227 SCPLCRRD 234 (235)
Q Consensus 227 sCPlCR~~ 234 (235)
.||+|..+
T Consensus 173 ~CP~C~~~ 180 (191)
T 1lko_A 173 LCPACAHP 180 (191)
T ss_dssp BCTTTCCB
T ss_pred CCCCCcCC
Confidence 67777653
No 205
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.93 E-value=12 Score=25.34 Aligned_cols=10 Identities=30% Similarity=0.983 Sum_probs=4.6
Q ss_pred cCcccccccc
Q 026690 189 SCSVCLQDFQ 198 (235)
Q Consensus 189 ~C~ICle~f~ 198 (235)
.|..|...+.
T Consensus 43 ~C~~C~~~L~ 52 (81)
T 2dlo_A 43 TCVVCHRGLD 52 (81)
T ss_dssp BCSSSCCBCT
T ss_pred CcccCCCccC
Confidence 4445544443
No 206
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.14 E-value=15 Score=26.88 Aligned_cols=36 Identities=11% Similarity=-0.014 Sum_probs=21.1
Q ss_pred ccCccccccccC-CCceeecCCCCCcccHhhHHHHHhcC
Q 026690 188 VSCSVCLQDFQL-GETARSLPHCHHMFHIPCIDKWLLGH 225 (235)
Q Consensus 188 ~~C~ICle~f~~-ge~v~~Lp~C~H~FH~~CI~~WL~~~ 225 (235)
..|..|...+.. |...... =+..||..|-.+-+..+
T Consensus 31 F~C~~C~~~L~~~g~~~~~~--~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRRLYYK--LGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp CCCSSSCSCCCCSSSCCCCB--TTBCCCHHHHHHHHTSC
T ss_pred CcccccCCchhcCCCeeEEE--CCeeechHHHHHHhCcc
Confidence 578888777763 3232222 36677777776655443
No 207
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=34.76 E-value=12 Score=30.00 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=13.7
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhh
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPC 217 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~C 217 (235)
..|+.|-+.+..++.+.. =+..||.+|
T Consensus 116 ~~C~~C~~~I~~~~~v~a---~~~~~H~~C 142 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEKVIG---AGKSWHKSC 142 (192)
T ss_dssp EECTTTSCEECSSSCEEE---TTEEECTTT
T ss_pred CcCCCCCCEecCcEEEec---CCCccchhc
Confidence 346666666655444432 244555544
No 208
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.59 E-value=15 Score=24.75 Aligned_cols=10 Identities=20% Similarity=0.723 Sum_probs=5.1
Q ss_pred ccCccccccc
Q 026690 188 VSCSVCLQDF 197 (235)
Q Consensus 188 ~~C~ICle~f 197 (235)
..|..|...+
T Consensus 42 F~C~~C~~~L 51 (80)
T 2cuq_A 42 LVCTGCQTPL 51 (80)
T ss_dssp CBCSSSCCBC
T ss_pred CCcccCCCcC
Confidence 3455555554
No 209
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.47 E-value=40 Score=24.74 Aligned_cols=36 Identities=17% Similarity=0.432 Sum_probs=23.0
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCCCccCC
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRD 234 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 234 (235)
..|+-|-+.+...+.+.. -+..||..|+. |-.|+.+
T Consensus 6 ~~C~~C~~~I~~~~~~~a---~~~~wH~~CF~--------C~~C~~~ 41 (122)
T 1m3v_A 6 KRCAGCGGKIADRFLLYA---MDSYWHSRCLK--------CSSCQAQ 41 (122)
T ss_dssp CCBSSSSSCCCSSCCEEE---TTEEECHHHHC--------CSSSCCC
T ss_pred CCCcccCCEeCCcEEEEE---CCceeHhhCCC--------cCCCCCc
Confidence 468888887775443333 46778887765 6666554
No 210
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=30.76 E-value=31 Score=25.37 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=31.0
Q ss_pred CccCccccccccC-CCceeecCCCCCcccHhhHHHHHhcCCCCCCccCC
Q 026690 187 RVSCSVCLQDFQL-GETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRD 234 (235)
Q Consensus 187 ~~~C~ICle~f~~-ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 234 (235)
=..|..|...+.. +...... =+..||..|-.+-+..+..|+.|..+
T Consensus 29 CF~C~~C~~~L~~~~~~~~~~--~g~~yC~~~y~~~~~~~~~C~~C~~~ 75 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRRLYYK--LGRKLCRRDYLRLFGQDGLCASCDKR 75 (131)
T ss_dssp TCBCTTTCCBCSSTTCCEEEE--TTEEECHHHHHHHHCCCEECTTTCCE
T ss_pred HcccCcCCCccccCCCeEEEE--CCEEeecCchhhhCCCccChhhcCCc
Confidence 3689999888863 3343333 37788888887755444478888764
No 211
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.58 E-value=18 Score=24.28 Aligned_cols=10 Identities=30% Similarity=0.972 Sum_probs=4.6
Q ss_pred cCcccccccc
Q 026690 189 SCSVCLQDFQ 198 (235)
Q Consensus 189 ~C~ICle~f~ 198 (235)
.|..|...+.
T Consensus 43 ~C~~C~~~L~ 52 (80)
T 1x3h_A 43 VCGDCFTSFS 52 (80)
T ss_dssp BCSSSCCBSC
T ss_pred ChhhCCCCCC
Confidence 4444444443
No 212
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=29.12 E-value=27 Score=23.81 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=16.3
Q ss_pred CccCccccccccCC--CceeecCCCCCcc
Q 026690 187 RVSCSVCLQDFQLG--ETARSLPHCHHMF 213 (235)
Q Consensus 187 ~~~C~ICle~f~~g--e~v~~Lp~C~H~F 213 (235)
...||+|...+... +...+.+.|++.|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 45788888876632 2333445576665
No 213
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=29.02 E-value=13 Score=21.05 Aligned_cols=8 Identities=38% Similarity=1.082 Sum_probs=5.4
Q ss_pred CCCCCccC
Q 026690 226 ASCPLCRR 233 (235)
Q Consensus 226 ~sCPlCR~ 233 (235)
.+||+|+.
T Consensus 4 ~~CpvCk~ 11 (28)
T 2jvx_A 4 FCCPKCQY 11 (28)
T ss_dssp EECTTSSC
T ss_pred ccCccccc
Confidence 45777765
No 214
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=28.71 E-value=21 Score=22.49 Aligned_cols=7 Identities=43% Similarity=1.402 Sum_probs=5.6
Q ss_pred CCCCccC
Q 026690 227 SCPLCRR 233 (235)
Q Consensus 227 sCPlCR~ 233 (235)
.||+|..
T Consensus 32 ~CP~Cg~ 38 (46)
T 6rxn_A 32 CCPVCGV 38 (46)
T ss_dssp BCTTTCC
T ss_pred cCcCCCC
Confidence 7999875
No 215
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=28.42 E-value=23 Score=28.14 Aligned_cols=46 Identities=13% Similarity=0.298 Sum_probs=30.8
Q ss_pred CccCccccccccC-CCceeecCCCCCcccHhhHHHHHhcCCCCCCccCC
Q 026690 187 RVSCSVCLQDFQL-GETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRD 234 (235)
Q Consensus 187 ~~~C~ICle~f~~-ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 234 (235)
=..|..|...+.. +...... =+..||..|-.+-+..+..|+.|..+
T Consensus 32 CF~C~~C~~~L~~~g~~~~~~--~g~~yC~~cy~~~~~~~~~C~~C~~~ 78 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTSSYTK--SGMILCRNDYIRLFGNSGACSACGQS 78 (188)
T ss_dssp GCBCTTTCCBHHHHCSEEEEE--TTEEECHHHHHHHHSCCEECTTTCCE
T ss_pred CcccCCCCcccccCCceEEEe--CCccccccccccccccCCccccCCCc
Confidence 3679999888775 4444333 36888888877654444468888764
No 216
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=28.38 E-value=55 Score=21.85 Aligned_cols=36 Identities=25% Similarity=0.615 Sum_probs=29.8
Q ss_pred CccCccccccccCCCceeecCCCCCcccHh-hHHHHH
Q 026690 187 RVSCSVCLQDFQLGETARSLPHCHHMFHIP-CIDKWL 222 (235)
Q Consensus 187 ~~~C~ICle~f~~ge~v~~Lp~C~H~FH~~-CI~~WL 222 (235)
...|.=|..++..|+....-...-|.||.. ||...-
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~fs 56 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFS 56 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHHC
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHcccC
Confidence 468999999999999877666688999975 888763
No 217
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=25.33 E-value=25 Score=25.81 Aligned_cols=29 Identities=17% Similarity=0.409 Sum_probs=17.2
Q ss_pred ccCccccccccCCCceeecCCCCCccc--HhhH
Q 026690 188 VSCSVCLQDFQLGETARSLPHCHHMFH--IPCI 218 (235)
Q Consensus 188 ~~C~ICle~f~~ge~v~~Lp~C~H~FH--~~CI 218 (235)
..|+.|-+.+..++.+... -++.|| .+|.
T Consensus 64 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~~~CF 94 (126)
T 2xqn_T 64 VVCQGCHNAIDPEVQRVTY--NNFSWHASTECF 94 (126)
T ss_dssp CBCTTTCSBCCTTSCEEEE--TTEEEESSTTTS
T ss_pred ccCcccCCcCCcCceEEEC--CCCEeeCCCCCc
Confidence 3577777777754443332 467777 6663
No 218
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=24.98 E-value=51 Score=21.98 Aligned_cols=49 Identities=27% Similarity=0.615 Sum_probs=31.5
Q ss_pred CCCCccCcccccc-ccCCCceeecCCCCCcccHhhHHHHHhcCC----CCCCccC
Q 026690 184 SGERVSCSVCLQD-FQLGETARSLPHCHHMFHIPCIDKWLLGHA----SCPLCRR 233 (235)
Q Consensus 184 ~~e~~~C~ICle~-f~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~----sCPlCR~ 233 (235)
.++...|.||+.. |.+|-.-... .|.-.|+..|=.+|-.+.+ .|-+||+
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~-yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCS-YCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBT-TTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCcccc-ccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 4556799999865 6665544444 3888888888666643333 3766654
No 219
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=24.23 E-value=91 Score=27.65 Aligned_cols=27 Identities=22% Similarity=0.480 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc
Q 026690 43 AIFTFFFALVGTLLGAMTGALIGQETE 69 (235)
Q Consensus 43 ~~~t~~fa~~g~~~ga~~ga~~g~~~~ 69 (235)
.-..+++|+.|+++|.+++.+.|...+
T Consensus 211 S~~~al~a~~Gs~vg~~~a~~lg~~~~ 237 (340)
T 3k3f_A 211 SRISALFAVIGSLVGLCTALIMHSPET 237 (340)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 334678999999999999988877543
No 220
>1tpx_A Prion protein, major prion protein; antibody, unknown function; 2.56A {Ovis aries} SCOP: d.6.1.1
Probab=23.77 E-value=7 Score=29.84 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=3.3
Q ss_pred HHHHHHHHHHhhcc
Q 026690 53 GTLLGAMTGALIGQ 66 (235)
Q Consensus 53 g~~~ga~~ga~~g~ 66 (235)
++-+||++|+|.|.
T Consensus 5 aaaaGAvvGgl~Gy 18 (121)
T 1tpx_A 5 AAAAGAVVGGLGGY 18 (121)
T ss_dssp ---------CCTTC
T ss_pred hHHHhHHhhcchhH
Confidence 44567777777665
No 221
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=23.32 E-value=33 Score=23.25 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=16.3
Q ss_pred CCccCccccccccCC--CceeecCCCCCcc
Q 026690 186 ERVSCSVCLQDFQLG--ETARSLPHCHHMF 213 (235)
Q Consensus 186 e~~~C~ICle~f~~g--e~v~~Lp~C~H~F 213 (235)
+...||+|...+... +...+.+.|++.|
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 346788888876532 2233444566655
No 222
>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A
Probab=21.69 E-value=28 Score=25.13 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=28.5
Q ss_pred HHHHHhhcccccccc--hhhhhhhhhHhhHHhhhhhcchh
Q 026690 58 AMTGALIGQETESGF--VRGAAVGAISGAVFSIEVFESSL 95 (235)
Q Consensus 58 a~~ga~~g~~~~~g~--~~ga~~gai~gav~s~e~~~s~~ 95 (235)
.+.|||+|...|.|- ++-.|-||+--||-+|=..+..+
T Consensus 14 ~VAGAIA~~lRe~~~veiqAIGa~AvNqAVKAIAIARg~l 53 (90)
T 2ek0_A 14 SVAGAIAAMLRTKGEVEVQAIGPQAVNQAVKAIAIARGYI 53 (90)
T ss_dssp HHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCceEEEEECHHHHHHHHHHHHHHHHhh
Confidence 567777877766664 68889999999998886655443
No 223
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=21.43 E-value=38 Score=22.93 Aligned_cols=28 Identities=7% Similarity=0.148 Sum_probs=16.5
Q ss_pred CCccCccccccccCC--CceeecCCCCCcc
Q 026690 186 ERVSCSVCLQDFQLG--ETARSLPHCHHMF 213 (235)
Q Consensus 186 e~~~C~ICle~f~~g--e~v~~Lp~C~H~F 213 (235)
+...||+|...+... +...+.+.|++.|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 346899998876632 2233344566655
No 224
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=21.42 E-value=37 Score=22.06 Aligned_cols=10 Identities=30% Similarity=0.850 Sum_probs=5.6
Q ss_pred cCcccccccc
Q 026690 189 SCSVCLQDFQ 198 (235)
Q Consensus 189 ~C~ICle~f~ 198 (235)
.|.+|--.|.
T Consensus 5 ~C~vCGyvYd 14 (54)
T 4rxn_A 5 TCTVCGYIYD 14 (54)
T ss_dssp EETTTCCEEC
T ss_pred ECCCCCeEEC
Confidence 4666655554
No 225
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=20.92 E-value=49 Score=25.58 Aligned_cols=28 Identities=18% Similarity=0.548 Sum_probs=19.4
Q ss_pred CccCccccccccCCC-ceeecCCCCCccc
Q 026690 187 RVSCSVCLQDFQLGE-TARSLPHCHHMFH 214 (235)
Q Consensus 187 ~~~C~ICle~f~~ge-~v~~Lp~C~H~FH 214 (235)
-..||-|-.+|.-.+ ...+.|.|+|-+-
T Consensus 27 lP~CP~C~seytYeDg~l~vCPeC~hEW~ 55 (138)
T 2akl_A 27 LPPCPQCNSEYTYEDGALLVCPECAHEWS 55 (138)
T ss_dssp SCCCTTTCCCCCEECSSSEEETTTTEEEC
T ss_pred CCCCCCCCCcceEecCCeEECCccccccC
Confidence 357999998876332 4566777888763
No 226
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.60 E-value=21 Score=25.92 Aligned_cols=8 Identities=38% Similarity=0.862 Sum_probs=5.0
Q ss_pred ccCccccc
Q 026690 188 VSCSVCLQ 195 (235)
Q Consensus 188 ~~C~ICle 195 (235)
..||+|-+
T Consensus 48 ~~CPvCgs 55 (112)
T 1l8d_A 48 GKCPVCGR 55 (112)
T ss_dssp EECTTTCC
T ss_pred CCCCCCCC
Confidence 35777754
Done!