BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026691
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P74367|PS11_SYNY3 Photosystem II 11 kDa protein OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=slr1645 PE=1 SV=2
Length = 134
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 130 SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAG 189
SG L Y + ++ TLRE++ + P+D N + D+A+ I DY+S +R + G
Sbjct: 27 SGTGLTGNYSQDTLTVIATLREAI-DLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGG 85
Query: 190 EESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEK 233
+S+ ++ A+ SLA +Y+ G + P+P ++K + + AE+
Sbjct: 86 LKSFTTMQTALNSLAGYYTSYG-ARPIPEKLKKRLQLEFTQAER 128
>sp|Q9LR64|Y1360_ARATH Thylakoid lumenal protein At1g03610, chloroplastic OS=Arabidopsis
thaliana GN=At1g03600 PE=1 SV=1
Length = 174
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 138 YLKSARELVKTLRESL---KEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYV 194
Y+K ++ +R +L K DP N +E+ +++ +R +K + G+ S+
Sbjct: 74 YIKDTSAVISKVRSTLSMQKTDP----NVADAVAELREASNSWVAKYRKEKALLGKASFR 129
Query: 195 ELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 235
++ A+ +++ Y GP+AP+P + K+ IL +++TAEK L
Sbjct: 130 DIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL 170
>sp|E0T5V0|FTSP_EDWTF Cell division protein FtsP OS=Edwardsiella tarda (strain FL6-60)
GN=ftsP PE=3 SV=1
Length = 472
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 28/133 (21%)
Query: 57 SRTHVVLPPVEAASSRRHVISCSSTALVAILTFNCGLAPLPVQAE--------------D 102
SR V L + A+++RR+++ S ++ + GL P P+QA+ D
Sbjct: 225 SRGWVRLRLLNASNARRYLLQLSDGRPFFVIASDQGLLPAPLQADTLPLAPGERREVLID 284
Query: 103 MSNGQD-----EKEEGVVGAIKSLFDPNEKTKSGKVL---PKAYLKSARELVKTLRESLK 154
MS G++ + G++ ++ LF+P+ S +VL P L + TL L
Sbjct: 285 MSKGEEISITAGEAAGIMDRLRGLFEPSSMLVSTRVLTLRPTGLLPL---MTDTLPARLA 341
Query: 155 EDP---KDIANFR 164
DP D+ N R
Sbjct: 342 ADPLPEGDVVNNR 354
>sp|Q8MI28|LBN_BOVIN Limbin OS=Bos taurus GN=EVC2 PE=2 SV=1
Length = 1209
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 76 ISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGV--------VGAIKSLFDPNEK 127
I S T + +L+ L +Q + + DE + V V +IK D + K
Sbjct: 502 IQSSETRMQGLLSTASAQLTLLIQKHERAGYLDEDQMQVLLERAQTEVFSIKQKLDNDLK 561
Query: 128 TKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRG---Q 184
+ K+ K +K RE+++ +E +E IA A A E YL WRG +
Sbjct: 562 QEKKKLHQKLIIKRRREMLQKHKEQRREQL-SIAE----ASGAAEDAGQYLGQWRGLMAE 616
Query: 185 KTVAGEESYVELEKA 199
+ A EE L++A
Sbjct: 617 HSAALEELQERLDQA 631
>sp|Q65DX0|ATPF_BACLD ATP synthase subunit b OS=Bacillus licheniformis (strain DSM 13 /
ATCC 14580) GN=atpF PE=3 SV=1
Length = 172
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 109 EKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLK---EDPKD--IANF 163
E+E+ + G I S NE+ K +A LK ARE ++L E+ K E KD I
Sbjct: 47 EREDYITGEISSAEKKNEEAKKLIEEQQALLKEAREESQSLIENAKKLGEQQKDEIIKAA 106
Query: 164 RRNADSAKESIRDYLSNWRGQKTVA 188
R+ A+ KES R + R Q A
Sbjct: 107 RQEAERMKESARSEIVKERDQAVTA 131
>sp|Q8U0H4|RTCB_PYRFU tRNA-splicing ligase RtcB OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rtcB PE=3 SV=1
Length = 970
Score = 32.7 bits (73), Expect = 2.3, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 108 DEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNA 167
+E +G I +DP +K K ++ AYLK +E VK R E K I N
Sbjct: 442 EENIRNFLGKINYEYDPKKKAKG--LIAYAYLK-FKESVKKERRKAMEISKKIYEETGNI 498
Query: 168 DSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAG 211
D A ++++D ++ ++T+ E + K + F + G
Sbjct: 499 DRAYKAVKDIVNRRFVERTIYEGERNPRVPKNFLTFEEFAKERG 542
>sp|Q8LAM0|UBP4_ARATH Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabidopsis thaliana
GN=UBP4 PE=1 SV=2
Length = 365
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 77 SCSSTALVAILTFNCGLAPLPVQA-EDMSNGQDEKEEGVVGAIKSLFDP--NEKTKSGKV 133
+C +++ L F AP Q E +N + + EE ++ + LF ++K K+G +
Sbjct: 31 TCYCNSVLQALYF---CAPFREQLLEHYANNKADAEENLLTCLADLFSQISSQKKKTGVI 87
Query: 134 LPKAYLKSARELVKTLRESLKEDPKDIANFRRN 166
PK +++ ++ + R + +D + N+ N
Sbjct: 88 APKRFVQRLKKQNELFRSYMHQDAHEFLNYLLN 120
>sp|Q6DAA8|FTSP_ERWCT Cell division protein FtsP OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=ftsP PE=3 SV=1
Length = 471
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 19/97 (19%)
Query: 57 SRTHVVLPPVEAASSRRHVISCSSTALVAILTFNCGLAPLPVQAE--------------D 102
SR V L + A++SRR+V+ S + ++ + GL P P+ D
Sbjct: 225 SRGWVRLRLLNASNSRRYVMRLSDGRAMNVIASDQGLLPAPMAVNQLSLAPGERREILID 284
Query: 103 MSNGQD-----EKEEGVVGAIKSLFDPNEKTKSGKVL 134
MS G++ + G++ ++ LF+P+ S ++L
Sbjct: 285 MSQGEEVTLTAGESAGIMDRLRGLFEPSSILISTQIL 321
>sp|Q9Y623|MYH4_HUMAN Myosin-4 OS=Homo sapiens GN=MYH4 PE=1 SV=2
Length = 1939
Score = 31.6 bits (70), Expect = 4.8, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 126 EKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQK 185
E+TK+ L A L+SAR LRE +E+ + A +R A + + WR +
Sbjct: 1325 EETKAKSTLAHA-LQSARHDCDLLREQYEEEQEAKAELQRGMSKANSEV----AQWRTKY 1379
Query: 186 TVAGEESYVELEKAIRSLA 204
+ ELE+A + LA
Sbjct: 1380 ETDAIQRTEELEEAKKKLA 1398
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,884,517
Number of Sequences: 539616
Number of extensions: 3161646
Number of successful extensions: 10795
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 10780
Number of HSP's gapped (non-prelim): 45
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)