Query 026694
Match_columns 235
No_of_seqs 173 out of 1522
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 11:24:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 6.3E-46 1.4E-50 317.5 16.2 213 10-225 2-214 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 3.8E-22 8.1E-27 146.9 6.6 86 138-223 2-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.9 4.3E-22 9.2E-27 146.6 5.4 86 16-104 2-87 (87)
4 KOG1623 Multitransmembrane pro 99.5 8.5E-15 1.8E-19 125.9 6.9 92 133-224 3-95 (243)
5 COG4095 Uncharacterized conser 99.3 4.9E-12 1.1E-16 91.7 7.7 83 13-101 4-86 (89)
6 COG4095 Uncharacterized conser 99.3 2.6E-12 5.6E-17 93.1 5.7 85 135-222 4-88 (89)
7 TIGR00951 2A43 Lysosomal Cysti 98.8 3.8E-08 8.3E-13 84.4 11.7 194 15-218 5-219 (220)
8 PF04193 PQ-loop: PQ loop repe 98.2 5.9E-06 1.3E-10 56.3 5.8 55 15-74 3-57 (61)
9 PF04193 PQ-loop: PQ loop repe 98.0 8E-06 1.7E-10 55.6 4.6 57 137-196 3-59 (61)
10 KOG3211 Predicted endoplasmic 97.8 0.00035 7.5E-09 58.8 10.8 194 14-223 31-227 (230)
11 KOG2913 Predicted membrane pro 97.4 0.0032 7E-08 55.3 12.2 200 17-222 9-249 (260)
12 TIGR00951 2A43 Lysosomal Cysti 96.6 0.0022 4.8E-08 55.0 4.1 50 136-188 4-53 (220)
13 PHA02246 hypothetical protein 96.3 0.41 8.8E-06 38.9 14.8 166 25-211 13-185 (192)
14 PRK01021 lpxB lipid-A-disaccha 96.2 0.17 3.6E-06 49.6 14.8 197 12-225 8-223 (608)
15 smart00679 CTNS Repeated motif 95.4 0.014 3.1E-07 34.2 2.4 26 31-56 2-27 (32)
16 PF03650 MPC: Uncharacterised 94.0 0.021 4.5E-07 44.3 0.8 79 143-226 23-103 (119)
17 smart00679 CTNS Repeated motif 93.4 0.039 8.5E-07 32.3 1.1 28 153-180 2-29 (32)
18 PF10688 Imp-YgjV: Bacterial i 93.0 2.3 4.9E-05 34.7 11.3 149 14-211 5-153 (163)
19 KOG2913 Predicted membrane pro 89.7 0.64 1.4E-05 41.0 5.1 59 134-195 7-65 (260)
20 PHA02246 hypothetical protein 89.1 2.4 5.1E-05 34.5 7.4 59 26-86 118-176 (192)
21 KOG1589 Uncharacterized conser 87.4 0.16 3.4E-06 38.6 -0.2 67 152-223 36-104 (118)
22 KOG3145 Cystine transporter Cy 84.2 15 0.00033 33.1 10.5 90 141-233 269-370 (372)
23 PF03650 MPC: Uncharacterised 84.1 0.34 7.4E-06 37.6 0.2 61 42-103 39-99 (119)
24 KOG1589 Uncharacterized conser 82.9 0.62 1.3E-05 35.5 1.1 62 42-104 43-104 (118)
25 KOG3211 Predicted endoplasmic 74.8 3.9 8.5E-05 34.8 3.6 73 28-102 153-225 (230)
26 PF07578 LAB_N: Lipid A Biosyn 73.3 5 0.00011 28.4 3.3 43 165-207 23-65 (72)
27 cd08764 Cyt_b561_CG1275_like N 69.4 21 0.00046 30.5 7.0 23 135-157 96-118 (214)
28 PF07578 LAB_N: Lipid A Biosyn 65.4 11 0.00024 26.6 3.7 51 33-88 14-65 (72)
29 COG3952 Predicted membrane pro 60.0 19 0.00041 27.4 4.3 77 135-215 25-101 (113)
30 PF10688 Imp-YgjV: Bacterial i 57.1 5.8 0.00012 32.4 1.3 35 54-91 118-152 (163)
31 KOG2489 Transmembrane protein 56.2 1.3E+02 0.0027 29.3 10.0 188 25-225 329-556 (592)
32 PF09586 YfhO: Bacterial membr 54.4 2.4E+02 0.0052 28.6 12.6 16 33-48 232-247 (843)
33 PF01034 Syndecan: Syndecan do 53.4 4.9 0.00011 27.7 0.2 31 202-233 19-53 (64)
34 PRK05771 V-type ATP synthase s 47.5 2.9E+02 0.0064 27.3 12.9 49 29-90 325-373 (646)
35 PF06946 Phage_holin_5: Phage 43.7 31 0.00068 25.6 3.2 59 171-229 34-92 (93)
36 PHA03049 IMV membrane protein; 37.8 31 0.00068 23.9 2.3 28 203-230 8-35 (68)
37 PRK01021 lpxB lipid-A-disaccha 36.1 3.5E+02 0.0075 27.0 10.0 74 12-93 138-212 (608)
38 PF15102 TMEM154: TMEM154 prot 34.6 44 0.00095 26.9 3.0 29 196-224 60-88 (146)
39 KOG4314 Predicted carbohydrate 33.4 1.5E+02 0.0032 25.5 6.1 53 130-182 126-178 (290)
40 PF05297 Herpes_LMP1: Herpesvi 32.4 15 0.00032 33.0 0.0 157 55-225 31-191 (381)
41 PRK11056 hypothetical protein; 32.4 1.2E+02 0.0025 23.6 4.8 80 131-221 31-111 (120)
42 PF05961 Chordopox_A13L: Chord 29.7 46 0.001 23.2 2.0 28 202-229 7-34 (68)
43 TIGR00341 conserved hypothetic 27.4 1.6E+02 0.0035 26.9 5.7 46 177-222 248-293 (325)
44 COG3952 Predicted membrane pro 25.6 82 0.0018 24.0 2.9 77 13-97 25-102 (113)
45 PF05602 CLPTM1: Cleft lip and 24.9 1.1E+02 0.0023 28.9 4.3 69 20-91 305-374 (438)
46 PRK02935 hypothetical protein; 23.5 1.8E+02 0.0039 22.2 4.4 52 98-151 4-58 (110)
47 KOG3618 Adenylyl cyclase [Gene 22.9 8.9E+02 0.019 25.4 11.3 17 56-74 88-104 (1318)
48 PF13491 DUF4117: Domain of un 22.7 2E+02 0.0042 22.8 5.0 18 133-150 41-58 (171)
49 KOG1619 Cytochrome b [Energy p 22.4 4.2E+02 0.009 23.2 7.0 42 134-175 124-167 (245)
50 PRK10746 putative transport pr 22.1 2.1E+02 0.0045 26.9 5.7 24 133-156 357-380 (461)
51 PF08693 SKG6: Transmembrane a 21.4 1.1E+02 0.0023 19.1 2.4 18 205-222 23-40 (40)
52 PF01372 Melittin: Melittin; 21.1 1.7E+02 0.0036 16.3 2.8 16 29-44 9-24 (26)
53 KOG1590 Uncharacterized conser 20.5 99 0.0021 24.1 2.5 68 150-219 35-104 (132)
54 PF07226 DUF1422: Protein of u 20.3 2.1E+02 0.0045 22.2 4.2 81 130-221 30-111 (117)
55 PF06123 CreD: Inner membrane 20.2 5.8E+02 0.013 24.2 8.1 51 137-198 355-406 (430)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=6.3e-46 Score=317.48 Aligned_cols=213 Identities=40% Similarity=0.683 Sum_probs=187.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHccHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHHHHhhhhhcCCceEEEEecchhhHHH
Q 026694 10 YSGCSVAAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQ 89 (235)
Q Consensus 10 ~~~~~~i~g~~~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~g~~l~ 89 (235)
.+.+.+++|..|++.|+++|++|+|+++||+|+||+|+.|+.||+++++||.+|+.|| .+.+|+..++..|.+|++++
T Consensus 2 ~~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG--~~~~~d~llitIN~~G~~ie 79 (243)
T KOG1623|consen 2 GNVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYG--LLKVHDYLLITINGIGLVIE 79 (243)
T ss_pred cchHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhh--hhccCceEEEEEehhcHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999 77773489999999999999
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHhhheeeeccCcchhhhhHHHHHHHHHHhhchhhhhhhheEcCCccc
Q 026694 90 LIYVSIFISYAEKAIKLKISGLLIAVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPLFIIKLVIKTRSVEF 169 (235)
Q Consensus 90 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~i~~f~sPl~~i~~viktks~~~ 169 (235)
++|+..|+.|+++|++.+... ..-..++.+.+++++...++++.+.+.+|.+|.+++++||+|||..+++++|+||+|.
T Consensus 80 ~~Yi~~f~~ya~~k~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~ 158 (243)
T KOG1623|consen 80 TVYISIFLYYAPKKKTVKIVL-ALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEY 158 (243)
T ss_pred HHHHHHHheecCchheeEeee-hHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceee
Confidence 999999999999988432111 1111122222334555668888889999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHhcccCCCeEEeehhHHHHHHHHHHHhheeecCCCCCC
Q 026694 170 MPFYLSLSNFLMSLSFLAYGMFKDDPFIYVPNGIGTLLGIAQVMLYSYYSTKSGEV 225 (235)
Q Consensus 170 i~~~~~~~~~~n~~~W~~YG~l~~d~~v~~~N~~G~~l~~~ql~l~~~y~~~~~~~ 225 (235)
||++++++.++++..|++||++.+|.++.+||.+|.++++.|+.+|+.|++++.++
T Consensus 159 mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~~~~~ 214 (243)
T KOG1623|consen 159 MPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKTTEKI 214 (243)
T ss_pred echHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCCcccc
Confidence 99999999999999999999999999999999999999999999999999877443
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.86 E-value=3.8e-22 Score=146.88 Aligned_cols=86 Identities=37% Similarity=0.524 Sum_probs=84.1
Q ss_pred hhhHHHHHHHHHHhhchhhhhhhheEcCCccccchhhHHHHHHHHHHHHHHhcccCCCeEEeehhHHHHHHHHHHHhhee
Q 026694 138 FVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFKDDPFIYVPNGIGTLLGIAQVMLYSY 217 (235)
Q Consensus 138 ~~G~~~~~~~i~~f~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~~d~~v~~~N~~G~~l~~~ql~l~~~ 217 (235)
++|.+|.+.++++++||+++++|++|+||++++|+.++++.++||.+|+.||++++|++++++|.+|.+++..|+.+|++
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~~ 81 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYYI 81 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 026694 218 YSTKSG 223 (235)
Q Consensus 218 y~~~~~ 223 (235)
|+++||
T Consensus 82 y~~~~~ 87 (87)
T PF03083_consen 82 YPSKKK 87 (87)
T ss_pred eCCCCC
Confidence 998875
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.86 E-value=4.3e-22 Score=146.59 Aligned_cols=86 Identities=27% Similarity=0.614 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHHHHhhhhhcCCceEEEEecchhhHHHHHHHHH
Q 026694 16 AAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSI 95 (235)
Q Consensus 16 i~g~~~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~g~~l~~~~~~~ 95 (235)
++|++|.+.++++++||+|+++|++|+|++|++|+.|++..++||.+|+.|| ++.+| .+++.+|++|.+++.+|+.+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG--~l~~d-~~i~~~N~~g~~~~~~~~~~ 78 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYG--ILIND-WPIIVPNVFGLVLSIIYLVV 78 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhh--hhcCC-eeEEeeHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999999999999999999999 89988 69999999999999999999
Q ss_pred Hhhhcchhh
Q 026694 96 FISYAEKAI 104 (235)
Q Consensus 96 ~~~y~~~~~ 104 (235)
|++|++|||
T Consensus 79 ~~~y~~~~~ 87 (87)
T PF03083_consen 79 YYIYPSKKK 87 (87)
T ss_pred eEEeCCCCC
Confidence 999998875
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.55 E-value=8.5e-15 Score=125.90 Aligned_cols=92 Identities=26% Similarity=0.382 Sum_probs=86.6
Q ss_pred CcchhhhhHHHHHHHHHHhhchhhhhhhheEcCCccccchhhHHHHHHHHHHHHHHhcccC-CCeEEeehhHHHHHHHHH
Q 026694 133 NGRRLFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFKD-DPFIYVPNGIGTLLGIAQ 211 (235)
Q Consensus 133 ~~~~~~~G~~~~~~~i~~f~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~~-d~~v~~~N~~G~~l~~~q 211 (235)
+.....+|..|.++++.+|.+|+++++|+.|+||+|+.+..|++++++||.+|+.||.+++ |..++..|.+|+++...|
T Consensus 3 ~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Y 82 (243)
T KOG1623|consen 3 NVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVY 82 (243)
T ss_pred chHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHH
Confidence 4566789999999999999999999999999999999999999999999999999999987 888888899999999999
Q ss_pred HHhheeecCCCCC
Q 026694 212 VMLYSYYSTKSGE 224 (235)
Q Consensus 212 l~l~~~y~~~~~~ 224 (235)
+..|+.|.++|++
T Consensus 83 i~~f~~ya~~k~~ 95 (243)
T KOG1623|consen 83 ISIFLYYAPKKKT 95 (243)
T ss_pred HHHHheecCchhe
Confidence 9999999988873
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=4.9e-12 Score=91.65 Aligned_cols=83 Identities=19% Similarity=0.283 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHHHHhhhhhcCCceEEEEecchhhHHHHHH
Q 026694 13 CSVAAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIY 92 (235)
Q Consensus 13 ~~~i~g~~~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~g~~l~~~~ 92 (235)
..+..|..|+..+... -+||..+++|+||++++|+.+|+.....+++|+.|| ++.+| .|+..+|.++..++..-
T Consensus 4 ~~~viG~ia~ilttf~---flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliyg--ILi~~-lPii~aN~i~~il~liI 77 (89)
T COG4095 4 FIEVIGTIAGILTTFA---FLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYG--ILIND-LPIIIANIISFILSLII 77 (89)
T ss_pred hhhhHHHHHHHHHHHH---HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHH--HHHcc-CcchhHHHHHHHHHHHH
Confidence 4678899888888655 589999999999999999999999999999999999 99998 89999999999999988
Q ss_pred HHHHhhhcc
Q 026694 93 VSIFISYAE 101 (235)
Q Consensus 93 ~~~~~~y~~ 101 (235)
++...+|..
T Consensus 78 l~~kI~~~~ 86 (89)
T COG4095 78 LFYKIKYIL 86 (89)
T ss_pred HHHHHHHHH
Confidence 777776643
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=2.6e-12 Score=93.08 Aligned_cols=85 Identities=19% Similarity=0.206 Sum_probs=78.0
Q ss_pred chhhhhHHHHHHHHHHhhchhhhhhhheEcCCccccchhhHHHHHHHHHHHHHHhcccCCCeEEeehhHHHHHHHHHHHh
Q 026694 135 RRLFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFKDDPFIYVPNGIGTLLGIAQVML 214 (235)
Q Consensus 135 ~~~~~G~~~~~~~i~~f~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~~d~~v~~~N~~G~~l~~~ql~l 214 (235)
..+.+|.+|+.++.++| +||..+++|+||++++++.++........+|+.||++++|.++...|.++..++..-+..
T Consensus 4 ~~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~~ 80 (89)
T COG4095 4 FIEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFY 80 (89)
T ss_pred hhhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHH
Confidence 45788999999999999 799999999999999999999999999999999999999999999999999999988887
Q ss_pred heeecCCC
Q 026694 215 YSYYSTKS 222 (235)
Q Consensus 215 ~~~y~~~~ 222 (235)
...|..|.
T Consensus 81 kI~~~~k~ 88 (89)
T COG4095 81 KIKYILKA 88 (89)
T ss_pred HHHHHHhc
Confidence 77765443
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.85 E-value=3.8e-08 Score=84.37 Aligned_cols=194 Identities=13% Similarity=0.080 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHHHH--------hhhhhcCCceEEEE-e---c
Q 026694 15 VAAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWY--------GMPLVSPGIILVAT-V---N 82 (235)
Q Consensus 15 ~i~g~~~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~Y--------G~~~l~~d~~~v~~-~---N 82 (235)
.++|+...+... .+-+||+++.+|+||++++|+..+..-..+...|..| . ..++ .+.-. . |
T Consensus 5 ~~lG~~~~~~~~---~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~---~~~~-~~~~~~~v~~e 77 (220)
T TIGR00951 5 QILGWGYVAAWS---ISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWS---ITNE-FPLSSPGVTQN 77 (220)
T ss_pred HHHHHHHHHHHH---HHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchh---hhhc-cccccCCCcHH
Confidence 456665555554 5579999999999999999999999999999999999 4 2222 22221 1 3
Q ss_pred chhhHHHHHH-----HHHHhhhcchhhHH-H-HHHH-HHHHHHHHHHHHhhheeeeccCcchhhhhHHHHHHHHHHhhch
Q 026694 83 SVGAVFQLIY-----VSIFISYAEKAIKL-K-ISGL-LIAVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASP 154 (235)
Q Consensus 83 ~~g~~l~~~~-----~~~~~~y~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~i~~f~sP 154 (235)
-+-..++... ..-+.+|.++.+|. + ..+. +....+.++...........+.+....++.+-..+++.-+
T Consensus 78 dl~~ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~iky--- 154 (220)
T TIGR00951 78 DVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKY--- 154 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH---
Confidence 3332222222 12222332221221 1 1111 1111111111111111112233455555555555555555
Q ss_pred hhhhhhheEcCCccccchhhHHHHHHHHHHHHHHhcc-cCCCeEEeehhHHHHHHHHHHHhheee
Q 026694 155 LFIIKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMF-KDDPFIYVPNGIGTLLGIAQVMLYSYY 218 (235)
Q Consensus 155 l~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l-~~d~~v~~~N~~G~~l~~~ql~l~~~y 218 (235)
+||++...|+||+++.|.......+..++.-..-... .+|...+....++..++.+.+.-.+.|
T Consensus 155 iPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~~~Q~~~y 219 (220)
T TIGR00951 155 FPQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLFAAQVFFY 219 (220)
T ss_pred hHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999998888887666655553 366666666777777777655544433
No 8
>PF04193 PQ-loop: PQ loop repeat
Probab=98.16 E-value=5.9e-06 Score=56.32 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHHHHhhhhhcCC
Q 026694 15 VAAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPG 74 (235)
Q Consensus 15 ~i~g~~~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~d 74 (235)
+++|+++.+.. ..+.+||+++.+|+|+++++|...+.....+..+|+.|. ++.++
T Consensus 3 ~~~g~i~~~~~---~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~--~~~~~ 57 (61)
T PF04193_consen 3 NILGIISIVLW---IISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYS--ILSNY 57 (61)
T ss_pred HHHHHHHHHHH---HHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHH--HHhcC
Confidence 45566665555 566899999999999999999999999999999999999 66664
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=98.04 E-value=8e-06 Score=55.65 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=49.0
Q ss_pred hhhhHHHHHHHHHHhhchhhhhhhheEcCCccccchhhHHHHHHHHHHHHHHhcccCCCe
Q 026694 137 LFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFKDDPF 196 (235)
Q Consensus 137 ~~~G~~~~~~~i~~f~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~~d~~ 196 (235)
+.+|.++.++....+ +||+.+.+|+||++++|+......+.++.+|+.|....++.+
T Consensus 3 ~~~g~i~~~~~~~~~---lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 3 NILGIISIVLWIISF---LPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHHHHHHHHH---HhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677766666665 899999999999999999999999999999999999876643
No 10
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=97.78 E-value=0.00035 Score=58.83 Aligned_cols=194 Identities=15% Similarity=0.116 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHHHHhhhhhcCCceEEEEecchhhHHHHHHH
Q 026694 14 SVAAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYV 93 (235)
Q Consensus 14 ~~i~g~~~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~g~~l~~~~~ 93 (235)
.+.+|+.....++.. -+||+-+|+.+||++++|...+..-+++-..-+.|. ..++.++.-+--..=+.+|.+-+
T Consensus 31 sklLg~~~va~sl~v---KlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~---~~~g~pFss~gE~~fLl~Q~vil 104 (230)
T KOG3211|consen 31 SKLLGLSTVAGSLLV---KLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYS---YTSGYPFSSYGEYPFLLLQAVIL 104 (230)
T ss_pred HhhhhHHHHHHHHHh---hhhHHHHHHhhcccccccHHHHHHHHHHHHheeeeh---hhcCCCchhHHHHHHHHHHHHHH
Confidence 345555555555444 589999999999999999999999999999999999 45553333333333355565544
Q ss_pred HHHhhhcc-hhhH-HHHHHHHHHHHHHHHHHHhhheeeeccCcchhhhhHHHHHHHHHHhhchhhhhhhheEcCCccccc
Q 026694 94 SIFISYAE-KAIK-LKISGLLIAVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMP 171 (235)
Q Consensus 94 ~~~~~y~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~i~~f~sPl~~i~~viktks~~~i~ 171 (235)
..+..+-+ +..+ .+.++........+ .+......++-...+...-+.-.+-++|+..-+|+|+++..+
T Consensus 105 i~~if~f~~~~~~~v~~l~~~~~v~~~~----------~sk~~p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls 174 (230)
T KOG3211|consen 105 ILCIFHFSGQTVTVVQFLGYIALVVSVL----------ASKALPLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLS 174 (230)
T ss_pred HHHHHHhccceeehhhHHHHHHHHHHHH----------HHhhhhHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhH
Confidence 44433322 1111 11222111111100 011222223333333333334467789999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccc-CCCeEEeehhHHHHHHHHHHHhheeecCCCC
Q 026694 172 FYLSLSNFLMSLSFLAYGMFK-DDPFIYVPNGIGTLLGIAQVMLYSYYSTKSG 223 (235)
Q Consensus 172 ~~~~~~~~~n~~~W~~YG~l~-~d~~v~~~N~~G~~l~~~ql~l~~~y~~~~~ 223 (235)
+.....++-.+.--..|.... +|.-+...-++...++.+-..-.++|++++.
T Consensus 175 ~it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~~ 227 (230)
T KOG3211|consen 175 LITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWSTAI 227 (230)
T ss_pred HHHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcCC
Confidence 999999999999999999885 5666666677777777777777777776554
No 11
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=97.40 E-value=0.0032 Score=55.33 Aligned_cols=200 Identities=18% Similarity=0.099 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHccHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHHHHhhhhhcCCceEEEEecchhhHHHHHHHHHH
Q 026694 17 AGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIF 96 (235)
Q Consensus 17 ~g~~~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~g~~l~~~~~~~~ 96 (235)
-.++|.+.+++-..+-+||+.+..|+|+.+++|+.+.+.-++....=+.|. .+.+. .++...-..=..++-..+.+.
T Consensus 9 s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~--~l~~~-~~~~~~~~~yy~~~d~~l~~q 85 (260)
T KOG2913|consen 9 STILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGF--FLQPL-GSTLKVQAVYYTLADSVLFVQ 85 (260)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHH--Hhccc-chhHHHHHHHHHHHHHHHHHH
Confidence 344555555666677899999999999999999999988888877778888 55543 111111111111122223333
Q ss_pred hhhcchhhH---------HH-HHH----------------------HHH-HHHHHHHHHHhhheee---eccC-cchhhh
Q 026694 97 ISYAEKAIK---------LK-ISG----------------------LLI-AVFLVFLAIVFTSMEV---FDSN-GRRLFV 139 (235)
Q Consensus 97 ~~y~~~~~~---------~~-~~~----------------------~~~-~~~~~~~~~~~~~~~~---~~~~-~~~~~~ 139 (235)
..|.+++.+ .+ ..+ ... .....+......+... ...+ ...+..
T Consensus 86 ~~yy~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (260)
T KOG2913|consen 86 CLYYGNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVFLICGAAYESLLRAVRVNGLEIDSL 165 (260)
T ss_pred HHhcchhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHHHHHHHHhhccccccccchhhhcch
Confidence 444333222 00 000 000 0001111111100111 1111 333455
Q ss_pred hH-HHHHHHHHHhhchhhhhhhheEcCCccccchhhHHHHHHHHHHHHHHhccc---CCCeEEeehhHHHHHHHHHHHhh
Q 026694 140 GY-LSVASLISMFASPLFIIKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFK---DDPFIYVPNGIGTLLGIAQVMLY 215 (235)
Q Consensus 140 G~-~~~~~~i~~f~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~---~d~~v~~~N~~G~~l~~~ql~l~ 215 (235)
|. +|.+.+.+-.++++||+....|.|++|++++.++......+ ..|+.-. .|..=..--.-+..+.+....-|
T Consensus 166 g~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n---~~y~~s~~~~~n~~w~~~~~~~~~~D~~~~~q~ 242 (260)
T KOG2913|consen 166 GAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGN---TTYILSSYLVTNLPWLVDSKGTIYLDIFIFLQF 242 (260)
T ss_pred HHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccc---cccccccccccCCcccccCCcchhHHHHHHHHH
Confidence 55 45677778888999999999999999999987766655555 6777661 11111111122344556666667
Q ss_pred eeecCCC
Q 026694 216 SYYSTKS 222 (235)
Q Consensus 216 ~~y~~~~ 222 (235)
+.|++.|
T Consensus 243 ~~~~~~~ 249 (260)
T KOG2913|consen 243 FNYRASK 249 (260)
T ss_pred HHhhccc
Confidence 7777666
No 12
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=96.64 E-value=0.0022 Score=55.01 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=44.1
Q ss_pred hhhhhHHHHHHHHHHhhchhhhhhhheEcCCccccchhhHHHHHHHHHHHHHH
Q 026694 136 RLFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPFYLSLSNFLMSLSFLAY 188 (235)
Q Consensus 136 ~~~~G~~~~~~~i~~f~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~Y 188 (235)
...+|....+.....+ +||+.+.+|+||++++|+......+.+...|..|
T Consensus 4 S~~lG~~~~~~~~~~~---~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 4 SQILGWGYVAAWSISF---YPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHHHHH---hhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 4567777777777666 7999999999999999999999999999999999
No 13
>PHA02246 hypothetical protein
Probab=96.31 E-value=0.41 Score=38.88 Aligned_cols=166 Identities=18% Similarity=0.157 Sum_probs=87.1
Q ss_pred HHHHHHccHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHHHHhhhhhcCCc--eEEEEecchhhHHHHHHHHHHhhhcch
Q 026694 25 AFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGI--ILVATVNSVGAVFQLIYVSIFISYAEK 102 (235)
Q Consensus 25 ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~d~--~~v~~~N~~g~~l~~~~~~~~~~y~~~ 102 (235)
++.....-+|+...+.|.|+.+++| -.|+-...-..+-..|- .+..|. +.++ +-...+.++...+.+- .|+++
T Consensus 13 ailit~gYipgL~slvk~~nv~GvS-~~FWYLi~~tvgiSfyN--lL~T~~~~fqi~-svg~nl~lgivcLlv~-~~rkk 87 (192)
T PHA02246 13 AILITVGYIPGLVALVKAESVKGVS-NYFWYLIVATVGISFYN--LLLTDASVFQIV-SVGLNLTLGIVCLLVA-SYRKK 87 (192)
T ss_pred HHHHHhhhhhhHHHHhhhcccccHH-HHHHHHHHHHHHHHHHH--HHhcCCceEEEe-eeehhhhhhhhheeee-hhhcc
Confidence 3444455689999999999999998 56666677778888899 555441 2222 2233344455444332 22222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhheeeeccCcchhhhhHHHHHHHHHHhhchhhhhhhheEcCCccccchhhHHHHHHHH
Q 026694 103 AIKLKISGLLIAVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPFYLSLSNFLMS 182 (235)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~i~~f~sPl~~i~~viktks~~~i~~~~~~~~~~n~ 182 (235)
+--..-.. ....+..+ . ..+..+..+.+ |...-+..| .+|+.+-+|||++|+.++..++.....-
T Consensus 88 d~f~~~fi-iifSLllf-----l---l~~~~evtQtV---at~tIiLaY---i~QIIqfyKTK~SEg~n~~l~lii~~GL 152 (192)
T PHA02246 88 DYFSIPFI-IVFSLLLF-----L---LSDFTALTQTV---ATITIILAY---VTQITTFYKTKSAEGTNRFLFLIIGLGL 152 (192)
T ss_pred ccccchHH-HHHHHHHH-----H---HhhhHHHHHHH---HHHHHHHHH---HHHHHHHhhhcccCCCChhHHHHHHHHH
Confidence 21100010 11111111 0 11122233333 333333334 7899999999999999988775543332
Q ss_pred HHHHHHhcccCC--CeEEee---hhHHHHHHHHH
Q 026694 183 LSFLAYGMFKDD--PFIYVP---NGIGTLLGIAQ 211 (235)
Q Consensus 183 ~~W~~YG~l~~d--~~v~~~---N~~G~~l~~~q 211 (235)
.-+.......+ ..++++ |.+=.+.+-.|
T Consensus 153 -~~L~~~m~Lthv~~hIiiTEf~N~iLiLiCy~q 185 (192)
T PHA02246 153 -ASLIVSMVLTHTYVHIIATEFVNFVLILICYLQ 185 (192)
T ss_pred -HHHHHHHhhhCCcceeeHHHHHHHHHHHHHHHH
Confidence 23344444433 355544 44444444333
No 14
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.24 E-value=0.17 Score=49.55 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHHHHHHHccHHHHHHHHHhcCcCCCCchhH-HHHHHHHHHHHHHhhhhhcCCceEEEEecchhhHHHH
Q 026694 12 GCSVAAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPY-ICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQL 90 (235)
Q Consensus 12 ~~~~i~g~~~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~-~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~g~~l~~ 90 (235)
.+...+|++|-++-..-| +-|-....| ....+-|.-| ...+..+.+=+.|| ++.+| .+++.-..+|.++..
T Consensus 8 ~~~~~~G~~~q~~F~~rf---~~QW~~sek--~~~s~~p~~FW~~Sl~g~~~l~~y~--~~~~~-~~~~~~q~~~~~iy~ 79 (608)
T PRK01021 8 LWLYPLGLFANLFFGSAF---CIQWFLSKK--RKYSYVPKIFWILSSIGAVLMICHG--FIQSQ-FPIALLHSFNLIIYF 79 (608)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHh--cCCccCchHHHHHHHHHHHHHHHHH--HHhcC-CcEEEecccceEEEe
Confidence 345567777766543332 334333333 3344445555 58889999999999 88877 577766666655422
Q ss_pred HHHHHHhhhcchhhHHHHH-HHHHHHHHH----HHHHHhhheeee-------------ccCcchhhhhHHHHHHHHHHhh
Q 026694 91 IYVSIFISYAEKAIKLKIS-GLLIAVFLV----FLAIVFTSMEVF-------------DSNGRRLFVGYLSVASLISMFA 152 (235)
Q Consensus 91 ~~~~~~~~y~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~-------------~~~~~~~~~G~~~~~~~i~~f~ 152 (235)
=-+..- .+++.-.|.. ..+....++ +++..+.+...+ +.+..-..+|.+|-++-..-|.
T Consensus 80 rNl~l~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~f~~Rf~ 156 (608)
T PRK01021 80 RNLNIA---SSRPLSVSKTLSLLVLSATAITLPFAIGTRYYPNMTWMASPNIFHLPLPPANLSWHLIGCIGLTIFSLRFF 156 (608)
T ss_pred ehhhhc---ccccchHHHHHHHHHhhhHhhhhHHHHHHHHhcCcchhhhHHHhhCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 111111 1111111211 111111111 111122222211 1123345667777666665552
Q ss_pred chhhhhhhheEcCCccccchhhHHHHHHHHHHHHHHhcccCCCeEEeehhHHHHHHHHHHHhheeecCCCCCC
Q 026694 153 SPLFIIKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFKDDPFIYVPNGIGTLLGIAQVMLYSYYSTKSGEV 225 (235)
Q Consensus 153 sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~~d~~v~~~N~~G~~l~~~ql~l~~~y~~~~~~~ 225 (235)
-|-... +++.-+.+|..--..++.++++=++|++.++|...++...+|.+...-.+ ++++..++++.
T Consensus 157 ---~Qw~~s-e~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~y~rnl--~li~~~~~~~~ 223 (608)
T PRK01021 157 ---IQWFYL-EYNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFPSLANL--RIAYKEARRKP 223 (608)
T ss_pred ---HHHHHH-HhcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhHHHHHH--HHHHhhccccc
Confidence 332222 33444567888889999999999999999999999999999998666554 34444444443
No 15
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=95.41 E-value=0.014 Score=34.18 Aligned_cols=26 Identities=35% Similarity=0.272 Sum_probs=21.4
Q ss_pred ccHHHHHHHHHhcCcCCCCchhHHHH
Q 026694 31 SPIPTFRRILRNKSTEQFSGLPYICS 56 (235)
Q Consensus 31 splp~~~~i~k~kst~~~s~~p~~~~ 56 (235)
+-+||+++++|+|+++++|...+...
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~ 27 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLW 27 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHH
Confidence 46899999999999999996655443
No 16
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=94.03 E-value=0.021 Score=44.27 Aligned_cols=79 Identities=9% Similarity=0.038 Sum_probs=61.5
Q ss_pred HHHHHHHHhhchhhhhhhheEcCCccccchhhHHHHHHHHHHHHHHhccc--CCCeEEeehhHHHHHHHHHHHhheeecC
Q 026694 143 SVASLISMFASPLFIIKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFK--DDPFIYVPNGIGTLLGIAQVMLYSYYST 220 (235)
Q Consensus 143 ~~~~~i~~f~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~--~d~~v~~~N~~G~~l~~~ql~l~~~y~~ 220 (235)
|.+..-.+-++++.++ +|..|.+|..+..+.++.+.+|+-|...+ +|+.++..|++-...+..|+.=+..|..
T Consensus 23 aP~~kWgl~iA~i~D~-----~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~ 97 (119)
T PF03650_consen 23 APVAKWGLPIAGIADM-----KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQY 97 (119)
T ss_pred hhheeheeeeeehhhc-----CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4443333333444443 58999999999999999999999999887 6888877899999999999988888876
Q ss_pred CCCCCC
Q 026694 221 KSGEVS 226 (235)
Q Consensus 221 ~~~~~~ 226 (235)
.++++.
T Consensus 98 ~~~~~~ 103 (119)
T PF03650_consen 98 SQKKEA 103 (119)
T ss_pred hcCchh
Confidence 665543
No 17
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=93.38 E-value=0.039 Score=32.27 Aligned_cols=28 Identities=25% Similarity=0.126 Sum_probs=23.2
Q ss_pred chhhhhhhheEcCCccccchhhHHHHHH
Q 026694 153 SPLFIIKLVIKTRSVEFMPFYLSLSNFL 180 (235)
Q Consensus 153 sPl~~i~~viktks~~~i~~~~~~~~~~ 180 (235)
+-+||+.+.+|+|+++++|+...+..+.
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 4589999999999999999877765443
No 18
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=92.99 E-value=2.3 Score=34.75 Aligned_cols=149 Identities=11% Similarity=0.128 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHHHHhhhhhcCCceEEEEecchhhHHHHHHH
Q 026694 14 SVAAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYV 93 (235)
Q Consensus 14 ~~i~g~~~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~g~~l~~~~~ 93 (235)
.+.+|.+|.+..+.-| + .|+-++ ........|.++...- .+.+. .+-+.+..++..-.
T Consensus 5 aQ~~g~ia~~l~~~sf-----~------~k~~~~----l~~~~~~~~~~~~ihf--~LLGa-----~taa~~~~ls~~R~ 62 (163)
T PF10688_consen 5 AQILGFIAFLLGILSF-----Q------QKDDRR----LLLLQAISCLLFAIHF--ALLGA-----WTAALSMLLSAVRN 62 (163)
T ss_pred HHHHHHHHHHHHHHHH-----H------cccHHH----HHHHHHHHHHHHHHHH--HHhCh-----HHHHHHHHHHHHHH
Confidence 4667777766664332 1 122121 2244555666666665 45554 24566667777766
Q ss_pred HHHhhhcchhhHHHHHHHHHHHHHHHHHHHhhheeeeccCcchhhhhHHHHHHHHHHhhchhhhhhhheEcCCccccchh
Q 026694 94 SIFISYAEKAIKLKISGLLIAVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPFY 173 (235)
Q Consensus 94 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~i~~f~sPl~~i~~viktks~~~i~~~ 173 (235)
.+..++++ +. .......... +... .+.+...+.++.+|++....... + .+++.
T Consensus 63 ~~s~~~~~---~~-v~~~Fi~~~~-----~~~~---~~~~g~~~~l~~~as~~~t~a~f----------~---~~~~~-- 115 (163)
T PF10688_consen 63 FVSIRTRS---RW-VMAVFIALSL-----VMGL---FTWQGWIELLPYAASVLGTIALF----------M---LDGIK-- 115 (163)
T ss_pred HHHHHhCC---HH-HHHHHHHHHH-----HHHH---HHHhhHHHHHHHHHHHHHHHHHH----------h---cCchh--
Confidence 66555543 21 1111111111 0111 12245667788877766655432 1 11222
Q ss_pred hHHHHHHHHHHHHHHhcccCCCeEEeehhHHHHHHHHH
Q 026694 174 LSLSNFLMSLSFLAYGMFKDDPFIYVPNGIGTLLGIAQ 211 (235)
Q Consensus 174 ~~~~~~~n~~~W~~YG~l~~d~~v~~~N~~G~~l~~~q 211 (235)
+=...++++.+|..|++..++++...-|......+...
T Consensus 116 mR~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~ 153 (163)
T PF10688_consen 116 MRILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLIT 153 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 22567999999999999999998888887777655544
No 19
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=89.73 E-value=0.64 Score=40.96 Aligned_cols=59 Identities=14% Similarity=0.009 Sum_probs=45.7
Q ss_pred cchhhhhHHHHHHHHHHhhchhhhhhhheEcCCccccchhhHHHHHHHHHHHHHHhcccCCC
Q 026694 134 GRRLFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFKDDP 195 (235)
Q Consensus 134 ~~~~~~G~~~~~~~i~~f~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~~d~ 195 (235)
......|.+..++....+ .||+.+..|+|+.+++|+...+........=..|-.+.+-.
T Consensus 7 ~~s~~~g~ls~~~w~v~~---iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~~ 65 (260)
T KOG2913|consen 7 TLSTILGILSTVCWCVQL---IPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPLG 65 (260)
T ss_pred HHHHHHHHHHHHhhhhhh---hhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcccc
Confidence 444555666666655555 79999999999999999999988888888877777776543
No 20
>PHA02246 hypothetical protein
Probab=89.07 E-value=2.4 Score=34.53 Aligned_cols=59 Identities=12% Similarity=0.176 Sum_probs=35.8
Q ss_pred HHHHHccHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHHHHhhhhhcCCceEEEEecchhh
Q 026694 26 FVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGA 86 (235)
Q Consensus 26 i~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~g~ 86 (235)
..+.++-+||+.+-+|+|++|+.|+.-|+..-..-.+ +...+ .+++-...++.+.....
T Consensus 118 ~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~-L~~~m-~Lthv~~hIiiTEf~N~ 176 (192)
T PHA02246 118 ITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLAS-LIVSM-VLTHTYVHIIATEFVNF 176 (192)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHH-HHHHH-hhhCCcceeeHHHHHHH
Confidence 3344567999999999999999998877654444332 22331 34443334444444333
No 21
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.44 E-value=0.16 Score=38.63 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=55.8
Q ss_pred hchhhhhhhheEcCCccccchhhHHHHHHHHHHHHHHhccc--CCCeEEeehhHHHHHHHHHHHhheeecCCCC
Q 026694 152 ASPLFIIKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFK--DDPFIYVPNGIGTLLGIAQVMLYSYYSTKSG 223 (235)
Q Consensus 152 ~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~--~d~~v~~~N~~G~~l~~~ql~l~~~y~~~~~ 223 (235)
.+.+.++ .|..|.+|.....+.+..++.|.-|.+.+ +|+.+.-.|++=.+-+..|+.=.+.|...++
T Consensus 36 ~AglaD~-----arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~~~ 104 (118)
T KOG1589|consen 36 IAGLADL-----ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQQQQK 104 (118)
T ss_pred eecHHhh-----cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554 35889999999999999999999999887 7899988999999999999999888854433
No 22
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=84.22 E-value=15 Score=33.13 Aligned_cols=90 Identities=13% Similarity=0.025 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhchhhhhhhheEcCCccccchhhH----HHHHHHHHHHHHHhcccCCCeEEeeh-------hHHHHHHH
Q 026694 141 YLSVASLISMFASPLFIIKLVIKTRSVEFMPFYLS----LSNFLMSLSFLAYGMFKDDPFIYVPN-------GIGTLLGI 209 (235)
Q Consensus 141 ~~~~~~~i~~f~sPl~~i~~viktks~~~i~~~~~----~~~~~n~~~W~~YG~l~~d~~v~~~N-------~~G~~l~~ 209 (235)
.+=...+.+=| +||...-.+.||+++-|..=. -.+.++-+.-+.-..-.+||--+..| .+.+++.+
T Consensus 269 yiKl~mTliKY---iPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~vSi~Fdi 345 (372)
T KOG3145|consen 269 YIKLAMTLIKY---IPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLVSIFFDI 345 (372)
T ss_pred HHHHHHHHHHh---hhHHhhcceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhHHHHHHH
Confidence 33334444445 689999999999998775322 22333333333333444555555544 23344445
Q ss_pred HHHHhhe-eecCCCCCCCCCCCCCC
Q 026694 210 AQVMLYS-YYSTKSGEVSRQPLIDS 233 (235)
Q Consensus 210 ~ql~l~~-~y~~~~~~~~~~~~~~~ 233 (235)
+.+.-.+ .||+++..+.|.|..|+
T Consensus 346 iFm~QhyVly~~~~~~~s~y~g~~~ 370 (372)
T KOG3145|consen 346 IFMMQHYVLYPRGHVLKSEYPGEDS 370 (372)
T ss_pred HHHhhheeEeccccccCCCCCCCCC
Confidence 4444444 45555555577777665
No 23
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=84.14 E-value=0.34 Score=37.58 Aligned_cols=61 Identities=21% Similarity=0.252 Sum_probs=50.6
Q ss_pred hcCcCCCCchhHHHHHHHHHHHHHHhhhhhcCCceEEEEecchhhHHHHHHHHHHhhhcchh
Q 026694 42 NKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISYAEKA 103 (235)
Q Consensus 42 ~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~g~~l~~~~~~~~~~y~~~~ 103 (235)
+|..+.+|..+-.+.++-+.+|+.|++ .+.+.++.++.+|.+-...+.+++.=++.|...+
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~-~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~ 99 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSL-VITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQ 99 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHhe-eecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 588999999999999999999999994 3344447889999999999999998777775433
No 24
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.93 E-value=0.62 Score=35.48 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=51.7
Q ss_pred hcCcCCCCchhHHHHHHHHHHHHHHhhhhhcCCceEEEEecchhhHHHHHHHHHHhhhcchhh
Q 026694 42 NKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISYAEKAI 104 (235)
Q Consensus 42 ~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~g~~l~~~~~~~~~~y~~~~~ 104 (235)
.|..|.+|.....+.......|..|.+ .+++.++.++.+|.+-.+.+.+++.=.+.|.....
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySl-VI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~~~ 104 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSL-VITPKNYSLFSVNFFVAITGIYQLTRIANYQQQQK 104 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeE-EEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999994 44444478999999999999999988888854433
No 25
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=74.84 E-value=3.9 Score=34.84 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=57.6
Q ss_pred HHHccHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHHHHhhhhhcCCceEEEEecchhhHHHHHHHHHHhhhcch
Q 026694 28 LFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISYAEK 102 (235)
Q Consensus 28 ~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~g~~l~~~~~~~~~~y~~~ 102 (235)
...+=++|+.+=+|+|++|..|.......+..|..=..|. ....+++.+...-.+..+++..-..-..+|.++
T Consensus 153 ~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARifts--iq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~ 225 (230)
T KOG3211|consen 153 VVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTS--IQETGDFLMLLRFVISLALNGLITAQVLRYWST 225 (230)
T ss_pred hhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHH--HHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 3466789999999999999999999999999999999999 676655666666666777776666666666543
No 26
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=73.31 E-value=5 Score=28.39 Aligned_cols=43 Identities=19% Similarity=0.415 Sum_probs=34.9
Q ss_pred CCccccchhhHHHHHHHHHHHHHHhcccCCCeEEeehhHHHHH
Q 026694 165 RSVEFMPFYLSLSNFLMSLSFLAYGMFKDDPFIYVPNGIGTLL 207 (235)
Q Consensus 165 ks~~~i~~~~~~~~~~n~~~W~~YG~l~~d~~v~~~N~~G~~l 207 (235)
+..+.+|..--..+...+.+=++||+.++|...++...+|.+.
T Consensus 23 ~k~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~i 65 (72)
T PF07578_consen 23 AKKSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFI 65 (72)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHH
Confidence 3334568888899999999999999999999777777777654
No 27
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=69.37 E-value=21 Score=30.52 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=15.8
Q ss_pred chhhhhHHHHHHHHHHhhchhhh
Q 026694 135 RRLFVGYLSVASLISMFASPLFI 157 (235)
Q Consensus 135 ~~~~~G~~~~~~~i~~f~sPl~~ 157 (235)
....+|+.+.+...+.++..+.+
T Consensus 96 lHSwlGl~t~~L~~lQ~~~Gf~~ 118 (214)
T cd08764 96 LHSWLGLTAVILFSLQWVGGFVS 118 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888777777776666544
No 28
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=65.42 E-value=11 Score=26.63 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCcCCCCchhH-HHHHHHHHHHHHHhhhhhcCCceEEEEecchhhHH
Q 026694 33 IPTFRRILRNKSTEQFSGLPY-ICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVF 88 (235)
Q Consensus 33 lp~~~~i~k~kst~~~s~~p~-~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~g~~l 88 (235)
+-|-....|+|. ..-|..| ...+..+.+=+.|| +..+| +..+....+|.+.
T Consensus 14 ~~QW~~SEk~k~--sv~P~~FW~lSl~Gs~lll~Y~--i~r~D-pV~ilgq~~gl~i 65 (72)
T PF07578_consen 14 IVQWIYSEKAKK--SVVPVAFWYLSLIGSLLLLIYA--IIRKD-PVFILGQSFGLFI 65 (72)
T ss_pred HHHHHHHHHcCC--CCCcHHHHHHHHHHHHHHHHHH--HHHcC-hHHHHHHhcChHH
Confidence 445444444443 3344444 68899999999999 88888 4444444444443
No 29
>COG3952 Predicted membrane protein [Function unknown]
Probab=60.03 E-value=19 Score=27.39 Aligned_cols=77 Identities=16% Similarity=0.262 Sum_probs=56.8
Q ss_pred chhhhhHHHHHHHHHHhhchhhhhhhheEcCCccccchhhHHHHHHHHHHHHHHhcccCCCeEEeehhHHHHHHHHHHHh
Q 026694 135 RRLFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFKDDPFIYVPNGIGTLLGIAQVML 214 (235)
Q Consensus 135 ~~~~~G~~~~~~~i~~f~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~~d~~v~~~N~~G~~l~~~ql~l 214 (235)
.-..+|..|..+-..-|. -| +-..+.++.+.+|.+.--++++.+.+-+.|-+-++|..=+..|+.|+...+..+-+
T Consensus 25 ~W~LiG~~g~~lFt~Rf~---VQ-w~~se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L 100 (113)
T COG3952 25 SWKLIGFSGQLLFTGRFV---VQ-WLASEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWL 100 (113)
T ss_pred HHHHHHHHHHHHHHHHHH---HH-HHHHHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHH
Confidence 345566666555444442 12 22346678888999999999999999999999999988778899999877766544
Q ss_pred h
Q 026694 215 Y 215 (235)
Q Consensus 215 ~ 215 (235)
.
T Consensus 101 ~ 101 (113)
T COG3952 101 I 101 (113)
T ss_pred H
Confidence 4
No 30
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=57.07 E-value=5.8 Score=32.37 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhhhhhcCCceEEEEecchhhHHHHH
Q 026694 54 ICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLI 91 (235)
Q Consensus 54 ~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~g~~l~~~ 91 (235)
....+++.+|+.|+ ++.++ ++....|......+.+
T Consensus 118 ~~~l~~~~~w~~~n--~~igS-~~g~l~e~~~~~~n~~ 152 (163)
T PF10688_consen 118 ILMLVGTLCWLIYN--ILIGS-WGGTLMEALFIISNLI 152 (163)
T ss_pred HHHHHHHHHHHHHH--HHHcC-HHHHHHHHHHHHHHHH
Confidence 56899999999999 88887 5666667666665553
No 31
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=56.16 E-value=1.3e+02 Score=29.29 Aligned_cols=188 Identities=16% Similarity=0.130 Sum_probs=118.2
Q ss_pred HHHHHHccHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHHHHhhhhhcCC-ceEEEEecchhhHHHHHHHH---------
Q 026694 25 AFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPG-IILVATVNSVGAVFQLIYVS--------- 94 (235)
Q Consensus 25 ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~d-~~~v~~~N~~g~~l~~~~~~--------- 94 (235)
++.=|++-=-++.=+.|+||-+++|.-..+.-++++..=+.|= +.++ .+.|.++-.+|+++...=+-
T Consensus 329 ~vFdfLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYl---lDneTs~mVlvs~gvG~~IE~WKi~K~m~v~id~ 405 (592)
T KOG2489|consen 329 SVFDFLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYL---LDNETSFMVLVSVGVGLLIELWKIKKAMKVEIDW 405 (592)
T ss_pred HHHHHHHhcchHHHhccccccccccHHHHHHHHHHHHhhhhee---ecCCccEEEEEeccceeeeeeeecceEEEEEEec
Confidence 3333445455666678899999999999999999888888887 4543 36778888899887653210
Q ss_pred ---HH-----------hhhcchhhHH---HHHHHHHHHHH--HHHHHHhhheeeeccCcchhhhhHHHHHHHHHHhhchh
Q 026694 95 ---IF-----------ISYAEKAIKL---KISGLLIAVFL--VFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPL 155 (235)
Q Consensus 95 ---~~-----------~~y~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~i~~f~sPl 155 (235)
+. =.|..++.+. +..+.+...++ +++..++..+..+...-..-++-.+.+..-.+-|+-.+
T Consensus 406 ~g~i~gv~pRl~f~dkgsysE~~Tk~yD~~A~kYLs~~L~PL~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~ 485 (592)
T KOG2489|consen 406 SGLIPGVLPRLSFSDKGSYSESKTKEYDDQAMKYLSYLLFPLLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFML 485 (592)
T ss_pred ccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhC
Confidence 00 1122222221 12333332222 11112233334455556666676666666666777789
Q ss_pred hhhhhheEcCCccccchhhHHHHHHHHHHHHHHhccc-----------CCCeEEeehhHHHHHHHHHHHhheeecCCCCC
Q 026694 156 FIIKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFK-----------DDPFIYVPNGIGTLLGIAQVMLYSYYSTKSGE 224 (235)
Q Consensus 156 ~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~-----------~d~~v~~~N~~G~~l~~~ql~l~~~y~~~~~~ 224 (235)
||+---.|-||++.+|-.+..-=++|.+.==++++.+ +|-.|+ ++|+.--|.||-++.|
T Consensus 486 PQLFINYKLKSVAHLPWR~~tYKa~NTFIDDlFAFVIkMPt~hRl~CfRDDIVF----------lIYLYQRWlYpVD~tR 555 (592)
T KOG2489|consen 486 PQLFINYKLKSVAHLPWRAFTYKAFNTFIDDLFAFVIKMPTLHRLACFRDDIVF----------LIYLYQRWLYPVDKTR 555 (592)
T ss_pred hHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccceEE----------EeeehhhhccccChhh
Confidence 9999999999999999999988888886544444332 233333 3466667888877776
Q ss_pred C
Q 026694 225 V 225 (235)
Q Consensus 225 ~ 225 (235)
.
T Consensus 556 v 556 (592)
T KOG2489|consen 556 V 556 (592)
T ss_pred h
Confidence 6
No 32
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=54.40 E-value=2.4e+02 Score=28.58 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCcCCC
Q 026694 33 IPTFRRILRNKSTEQF 48 (235)
Q Consensus 33 lp~~~~i~k~kst~~~ 48 (235)
+|.+....+++..++-
T Consensus 232 lP~~~~~l~~~r~~~~ 247 (843)
T PF09586_consen 232 LPTILSLLQSKRSGGS 247 (843)
T ss_pred HHHHHHHHhCCCccCC
Confidence 7999999988887765
No 33
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=53.38 E-value=4.9 Score=27.72 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=1.4
Q ss_pred hHHHHHHHHHHHhheeecCCCCCC----CCCCCCCC
Q 026694 202 GIGTLLGIAQVMLYSYYSTKSGEV----SRQPLIDS 233 (235)
Q Consensus 202 ~~G~~l~~~ql~l~~~y~~~~~~~----~~~~~~~~ 233 (235)
++|+ +..+-++++++|+-+|+++ .+|||..|
T Consensus 19 Vvgl-l~ailLIlf~iyR~rkkdEGSY~l~e~K~s~ 53 (64)
T PF01034_consen 19 VVGL-LFAILLILFLIYRMRKKDEGSYDLDEPKPSN 53 (64)
T ss_dssp -------------------S------SS--S-----
T ss_pred HHHH-HHHHHHHHHHHHHHHhcCCCCccCCCCCccc
Confidence 3444 4455677888898777777 66666543
No 34
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=47.45 E-value=2.9e+02 Score=27.30 Aligned_cols=49 Identities=14% Similarity=0.461 Sum_probs=36.5
Q ss_pred HHccHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHHHHhhhhhcCCceEEEEecchhhHHHH
Q 026694 29 FVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQL 90 (235)
Q Consensus 29 ~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~g~~l~~ 90 (235)
+..|+..+-+.+-.=+-++++|.|+++.. .++.+| ++-+|. .-|+++-+
T Consensus 325 ~~~pFE~lv~mYg~P~Y~EiDPT~~~ai~----f~lfFG--mM~gD~-------GyGLil~l 373 (646)
T PRK05771 325 FIKPFESLTEMYSLPKYNEIDPTPFLAIF----FPLFFG--MMLGDA-------GYGLLLLL 373 (646)
T ss_pred hhhhHHHHHHHcCCCCCCCcCCccHHHHH----HHHHHH--HHHHhH-------HHHHHHHH
Confidence 35577888888888888999999988654 578889 788883 34666655
No 35
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=43.69 E-value=31 Score=25.59 Aligned_cols=59 Identities=17% Similarity=0.119 Sum_probs=40.9
Q ss_pred chhhHHHHHHHHHHHHHHhcccCCCeEEeehhHHHHHHHHHHHhheeecCCCCCCCCCC
Q 026694 171 PFYLSLSNFLMSLSFLAYGMFKDDPFIYVPNGIGTLLGIAQVMLYSYYSTKSGEVSRQP 229 (235)
Q Consensus 171 ~~~~~~~~~~n~~~W~~YG~l~~d~~v~~~N~~G~~l~~~ql~l~~~y~~~~~~~~~~~ 229 (235)
...|.+...+..++=.++..+.+|.-+..--..|.+.++....++=.+.||++|..|..
T Consensus 34 K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~~~e~~ 92 (93)
T PF06946_consen 34 KWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKKYGEDD 92 (93)
T ss_pred chhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhhcCcCC
Confidence 45556666666666667777777664443345688888888888888888877776653
No 36
>PHA03049 IMV membrane protein; Provisional
Probab=37.83 E-value=31 Score=23.93 Aligned_cols=28 Identities=18% Similarity=0.333 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhheeecCCCCCCCCCCC
Q 026694 203 IGTLLGIAQVMLYSYYSTKSGEVSRQPL 230 (235)
Q Consensus 203 ~G~~l~~~ql~l~~~y~~~~~~~~~~~~ 230 (235)
++++..++-+++|-+|.|++....+||.
T Consensus 8 ~iICVaIi~lIvYgiYnkk~~~q~~~p~ 35 (68)
T PHA03049 8 VIICVVIIGLIVYGIYNKKTTTSQNPPS 35 (68)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCC
Confidence 4556667788899999988877766663
No 37
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=36.12 E-value=3.5e+02 Score=26.99 Aligned_cols=74 Identities=15% Similarity=0.048 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHHHccHHHHHHHHHhcCcCCCCchhH-HHHHHHHHHHHHHhhhhhcCCceEEEEecchhhHHHH
Q 026694 12 GCSVAAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPY-ICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQL 90 (235)
Q Consensus 12 ~~~~i~g~~~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~-~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~g~~l~~ 90 (235)
....++|.+|-++-..-| +-|.....|+|. +.=|..| ...+.++.+=+.|+ +..+| +-.+..+.+|++...
T Consensus 138 ~~~~~~G~~~q~~f~~Rf---~~Qw~~se~~~~--s~~p~~FW~~s~~G~~~~l~Y~--i~r~d-pv~i~g~~~g~~~y~ 209 (608)
T PRK01021 138 LSWHLIGCIGLTIFSLRF---FIQWFYLEYNNQ--SALPALFWKASLLGGSLALLYF--IRTGD-PVNILCYGCGLFPSL 209 (608)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHhcCC--CCCcHHHHHHHHHhHHHHHHHH--HHhCC-ceEEEccccchhHHH
Confidence 445677777766654333 344444333333 3334444 68899999999999 88888 566677899988866
Q ss_pred HHH
Q 026694 91 IYV 93 (235)
Q Consensus 91 ~~~ 93 (235)
=-+
T Consensus 210 rnl 212 (608)
T PRK01021 210 ANL 212 (608)
T ss_pred HHH
Confidence 544
No 38
>PF15102 TMEM154: TMEM154 protein family
Probab=34.60 E-value=44 Score=26.90 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=16.8
Q ss_pred eEEeehhHHHHHHHHHHHhheeecCCCCC
Q 026694 196 FIYVPNGIGTLLGIAQVMLYSYYSTKSGE 224 (235)
Q Consensus 196 ~v~~~N~~G~~l~~~ql~l~~~y~~~~~~ 224 (235)
.|++|-+++.++-+.-+++..+|+|++.|
T Consensus 60 mIlIP~VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 60 MILIPLVLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred EEeHHHHHHHHHHHHHHHheeEEeecccC
Confidence 44557666666555556666666554443
No 39
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=33.40 E-value=1.5e+02 Score=25.53 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=44.0
Q ss_pred eccCcchhhhhHHHHHHHHHHhhchhhhhhhheEcCCccccchhhHHHHHHHH
Q 026694 130 FDSNGRRLFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPFYLSLSNFLMS 182 (235)
Q Consensus 130 ~~~~~~~~~~G~~~~~~~i~~f~sPl~~i~~viktks~~~i~~~~~~~~~~n~ 182 (235)
.|.+...+.+|..|++.+..|-+-.=-.+|+.+-+.|.++.+.-++..+++|-
T Consensus 126 ~DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL 178 (290)
T KOG4314|consen 126 ADNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNL 178 (290)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 56777889999999999988877666778899999999988888887777774
No 40
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=32.42 E-value=15 Score=33.01 Aligned_cols=157 Identities=18% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhcCCc--eEEEEecchhhHHHHHHHHHHhhhcchhhHH-HHHHHHHHHHHHHHHHHhhheeeec
Q 026694 55 CSLLNCLITLWYGMPLVSPGI--ILVATVNSVGAVFQLIYVSIFISYAEKAIKL-KISGLLIAVFLVFLAIVFTSMEVFD 131 (235)
Q Consensus 55 ~~~~n~~~W~~YG~~~l~~d~--~~v~~~N~~g~~l~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (235)
..++..+.|+.-= + +|+ ....+-|.+.+++-++.++++.+. ||. .=++.+. . +++++++......+
T Consensus 31 lll~ail~w~~ii---m-sd~t~~a~~vl~sfAvvliiIIiIImlF~----RrLLCPLGlLC-i--ilimi~lLv~~L~t 99 (381)
T PF05297_consen 31 LLLVAILVWFFII---M-SDLTQGALTVLYSFAVVLIIIIIIIMLFK----RRLLCPLGLLC-I--ILIMIVLLVSMLWT 99 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH---H-hccccchHHHHHHHHHHHHHHHHHHHHHH----HhhcCcchHHH-H--HHHHHHHHHHHHHH
Confidence 3444455665432 2 232 244556788777777666666542 222 1112111 1 11111111111111
Q ss_pred cCcchhhhhHHHHHHHHHHhhchhhhhhhheEcCCccccchhhHHHHHHHHHHHHHHhcc-cCCCeEEeehhHHHHHHHH
Q 026694 132 SNGRRLFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMF-KDDPFIYVPNGIGTLLGIA 210 (235)
Q Consensus 132 ~~~~~~~~G~~~~~~~i~~f~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l-~~d~~v~~~N~~G~~l~~~ 210 (235)
-.-...++|++--++.+...+.-.-.++ .+|+--++--..+.++.+|+-.++-++-..+ ..+|+-+.....=+++-+.
T Consensus 100 LtGQ~LF~Gi~~l~l~~lLaL~vW~Ym~-lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFla 178 (381)
T PF05297_consen 100 LTGQTLFVGIVILFLCCLLALGVWFYMW-LLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLA 178 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234556676544433333322222222 4455444444445555555555555555544 4567666555444443222
Q ss_pred HHHhheeecCCCCCC
Q 026694 211 QVMLYSYYSTKSGEV 225 (235)
Q Consensus 211 ql~l~~~y~~~~~~~ 225 (235)
++.|.|-.+.++.
T Consensus 179 --iLIWlY~H~~~~~ 191 (381)
T PF05297_consen 179 --ILIWLYVHDQRHA 191 (381)
T ss_dssp ---------------
T ss_pred --HHHHHHhcCCCCC
Confidence 2335555444443
No 41
>PRK11056 hypothetical protein; Provisional
Probab=32.37 E-value=1.2e+02 Score=23.65 Aligned_cols=80 Identities=11% Similarity=0.010 Sum_probs=49.1
Q ss_pred ccCcchhhhhHHHHHHHHHHhhchhhhhhhheEcCCccccchhhHHHHHHHHHHHHHHhcccCCC-eEEeehhHHHHHHH
Q 026694 131 DSNGRRLFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFKDDP-FIYVPNGIGTLLGI 209 (235)
Q Consensus 131 ~~~~~~~~~G~~~~~~~i~~f~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~~d~-~v~~~N~~G~~l~~ 209 (235)
++..--.++.+++-+.++-..- .|-+++-..|++|.......++.. +.|....+.. +=+.+|.+-..+.+
T Consensus 31 ~s~VpFSiFPlIaLvLavycLy------Q~Yl~~~m~eg~P~~a~acFflG~---f~ySA~vraeyPeiGSNF~p~il~~ 101 (120)
T PRK11056 31 SSIVPFSIFPLIALVLAVYCLH------QRYLNRPMPEGLPGLAAACFFLGV---FLYSAFVRAEYPEIGSNFFPAVLSV 101 (120)
T ss_pred ccccccHHHHHHHHHHHHHHHH------HHHhcCCCCCCChHHHHHHHHHHH---HHHHHHHHhcCcccccchHHHHHHH
Confidence 3455667778888777776542 344455566777766655555544 4677666544 44558999988665
Q ss_pred HHHHhheeecCC
Q 026694 210 AQVMLYSYYSTK 221 (235)
Q Consensus 210 ~ql~l~~~y~~~ 221 (235)
+- ++|++.+-
T Consensus 102 ~L--~~Wi~~kl 111 (120)
T PRK11056 102 IL--VFWIGRKL 111 (120)
T ss_pred HH--HHHHHHHH
Confidence 43 44555443
No 42
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=29.66 E-value=46 Score=23.19 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHhheeecCCCCCCCCCC
Q 026694 202 GIGTLLGIAQVMLYSYYSTKSGEVSRQP 229 (235)
Q Consensus 202 ~~G~~l~~~ql~l~~~y~~~~~~~~~~~ 229 (235)
.++++..++-+++|-+|.|++..+-.+|
T Consensus 7 Li~ICVaii~lIlY~iYnr~~~~q~~~~ 34 (68)
T PF05961_consen 7 LIIICVAIIGLILYGIYNRKKTTQNTNP 34 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCC
Confidence 3566667788889999998877654444
No 43
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=27.40 E-value=1.6e+02 Score=26.87 Aligned_cols=46 Identities=9% Similarity=-0.067 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcccCCCeEEeehhHHHHHHHHHHHhheeecCCC
Q 026694 177 SNFLMSLSFLAYGMFKDDPFIYVPNGIGTLLGIAQVMLYSYYSTKS 222 (235)
Q Consensus 177 ~~~~n~~~W~~YG~l~~d~~v~~~N~~G~~l~~~ql~l~~~y~~~~ 222 (235)
+..--++.|--|....+-...+..|.+|+.++..-.+.+.-|++++
T Consensus 248 ~~~Gi~la~g~~~~a~ga~~L~~~Nl~~I~la~~~vf~~~g~~p~~ 293 (325)
T TIGR00341 248 VATGILLVISPLPLAVKSLILTLINVAGLMAGSLAGVYVYGIRAYR 293 (325)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 3333334444444444555667789999998776655555555443
No 44
>COG3952 Predicted membrane protein [Function unknown]
Probab=25.56 E-value=82 Score=24.01 Aligned_cols=77 Identities=16% Similarity=0.172 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhcCcCCCCchhH-HHHHHHHHHHHHHhhhhhcCCceEEEEecchhhHHHHH
Q 026694 13 CSVAAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPY-ICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLI 91 (235)
Q Consensus 13 ~~~i~g~~~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~-~~~~~n~~~W~~YG~~~l~~d~~~v~~~N~~g~~l~~~ 91 (235)
.....|..|-.+-.+-| +-|... .++++...+ |.+| -..++...+=+.|- +-.+| .--+..|+.|++.++.
T Consensus 25 ~W~LiG~~g~~lFt~Rf---~VQw~~-se~a~rsv~-P~~FW~~sllGg~l~L~Yf--i~~~D-pV~Vl~~~~glF~~l~ 96 (113)
T COG3952 25 SWKLIGFSGQLLFTGRF---VVQWLA-SEHANRSVI-PVLFWYFSLLGGLLLLSYF--IRRQD-PVFVLGQACGLFIYLR 96 (113)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHH-HHhcCCCcc-hHHHHHHHHHhhHHHHHHH--HHhcc-hHHHHHHhhhHHHHHH
Confidence 45666776665543332 222222 223333344 4455 58888999999999 78888 3334567777777665
Q ss_pred HHHHHh
Q 026694 92 YVSIFI 97 (235)
Q Consensus 92 ~~~~~~ 97 (235)
-+.+..
T Consensus 97 nL~L~~ 102 (113)
T COG3952 97 NLWLII 102 (113)
T ss_pred HHHHHH
Confidence 554443
No 45
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=24.90 E-value=1.1e+02 Score=28.94 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHccHHHHHHHHHhcCcCCCCchhHHHHHHHHHHHHHHhhhhhcCC-ceEEEEecchhhHHHHH
Q 026694 20 TGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPG-IILVATVNSVGAVFQLI 91 (235)
Q Consensus 20 ~~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG~~~l~~d-~~~v~~~N~~g~~l~~~ 91 (235)
+..+-++.=|++-=-++.-++++||.+|+|.-..+.-+++...=++|= +.+| .+.|.+++++|++++..
T Consensus 305 vs~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL---~D~~ts~lil~~~gig~~ie~W 374 (438)
T PF05602_consen 305 VSLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYL---LDNETSWLILVPSGIGLLIEAW 374 (438)
T ss_pred HHHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeE---EeCCCcEEeehHhHhHHhHhhe
Confidence 334445666777778999999999999999887777777777666775 4433 46788999999998774
No 46
>PRK02935 hypothetical protein; Provisional
Probab=23.53 E-value=1.8e+02 Score=22.18 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=22.5
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHhhheeeeccC---cchhhhhHHHHHHHHHHh
Q 026694 98 SYAEKAIKLKISGLLIAVFLVFLAIVFTSMEVFDSN---GRRLFVGYLSVASLISMF 151 (235)
Q Consensus 98 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~G~~~~~~~i~~f 151 (235)
.|+++-+|.|+.+..+....+..++. -..++++. ..-.++|+++.+.+...|
T Consensus 4 k~ssKINkiRt~aL~lvfiG~~vMy~--Giff~~~~~~m~ifm~~G~l~~l~S~vvY 58 (110)
T PRK02935 4 KYSNKINKIRTFALSLVFIGFIVMYL--GIFFRESIIIMTIFMLLGFLAVIASTVVY 58 (110)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH--HHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666654332222222221 12222222 223445666666555554
No 47
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=22.95 E-value=8.9e+02 Score=25.37 Aligned_cols=17 Identities=24% Similarity=0.172 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhhhhcCC
Q 026694 56 SLLNCLITLWYGMPLVSPG 74 (235)
Q Consensus 56 ~~~n~~~W~~YG~~~l~~d 74 (235)
..+.|++|.+|= .+.+.
T Consensus 88 I~~~~l~W~lYf--av~~r 104 (1318)
T KOG3618|consen 88 IGFACLLWSLYF--AVHMR 104 (1318)
T ss_pred HHHHHHHHHHHh--eeccC
Confidence 356789999998 56554
No 48
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=22.74 E-value=2e+02 Score=22.80 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=12.3
Q ss_pred CcchhhhhHHHHHHHHHH
Q 026694 133 NGRRLFVGYLSVASLISM 150 (235)
Q Consensus 133 ~~~~~~~G~~~~~~~i~~ 150 (235)
++.++..|.+|..++=.+
T Consensus 41 ~~~~N~~G~~Ga~~a~~l 58 (171)
T PF13491_consen 41 AEVHNLMGILGAYLADFL 58 (171)
T ss_pred CCCcCCCChHhHHHHHhH
Confidence 366788888887666543
No 49
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=22.36 E-value=4.2e+02 Score=23.22 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=22.7
Q ss_pred cchhhhhHHHHHHHHHHhhchhhhhhhheEcCCc--cccchhhH
Q 026694 134 GRRLFVGYLSVASLISMFASPLFIIKLVIKTRSV--EFMPFYLS 175 (235)
Q Consensus 134 ~~~~~~G~~~~~~~i~~f~sPl~~i~~viktks~--~~i~~~~~ 175 (235)
....-+|+.+...=...+.....+..---..+|. .-||...+
T Consensus 124 SLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~ 167 (245)
T KOG1619|consen 124 SLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVF 167 (245)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHH
Confidence 4567778877776666665555444333333333 23454443
No 50
>PRK10746 putative transport protein YifK; Provisional
Probab=22.06 E-value=2.1e+02 Score=26.89 Aligned_cols=24 Identities=17% Similarity=0.001 Sum_probs=12.6
Q ss_pred CcchhhhhHHHHHHHHHHhhchhh
Q 026694 133 NGRRLFVGYLSVASLISMFASPLF 156 (235)
Q Consensus 133 ~~~~~~~G~~~~~~~i~~f~sPl~ 156 (235)
++.-+.+-.++.......|..+..
T Consensus 357 ~~~f~~l~~~~~~~~~i~w~~i~~ 380 (461)
T PRK10746 357 QRVFVYVYSASVLPGMVPWFVILI 380 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555666665544
No 51
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=21.44 E-value=1.1e+02 Score=19.13 Aligned_cols=18 Identities=17% Similarity=0.460 Sum_probs=9.4
Q ss_pred HHHHHHHHHhheeecCCC
Q 026694 205 TLLGIAQVMLYSYYSTKS 222 (235)
Q Consensus 205 ~~l~~~ql~l~~~y~~~~ 222 (235)
.+.-..-.++|++|+|+|
T Consensus 23 vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 23 VIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred HHHHHHHHHhheEEeccC
Confidence 333344455666676654
No 52
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=21.05 E-value=1.7e+02 Score=16.33 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=12.8
Q ss_pred HHccHHHHHHHHHhcC
Q 026694 29 FVSPIPTFRRILRNKS 44 (235)
Q Consensus 29 ~~splp~~~~i~k~ks 44 (235)
..+.+|++..++|+|.
T Consensus 9 la~~LP~lISWIK~kr 24 (26)
T PF01372_consen 9 LATGLPTLISWIKNKR 24 (26)
T ss_dssp HHTHHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHh
Confidence 3457899999999885
No 53
>KOG1590 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.45 E-value=99 Score=24.11 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=50.1
Q ss_pred HhhchhhhhhhheEcCCccccchhhHHHHHHHHHHHHHHhccc--CCCeEEeehhHHHHHHHHHHHhheeec
Q 026694 150 MFASPLFIIKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFK--DDPFIYVPNGIGTLLGIAQVMLYSYYS 219 (235)
Q Consensus 150 ~f~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~--~d~~v~~~N~~G~~l~~~ql~l~~~y~ 219 (235)
-++-|+..+.+ -+||-+-+|-.|..+.++-+...+-|.... +|+.++.-.........+|..=|..|.
T Consensus 35 NwGlpiAal~D--mkK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~N~taQ~~Qg~Rf~~~~ 104 (132)
T KOG1590|consen 35 NWGLPIAALVD--MKKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHATNETAQLAQGSRFLNYN 104 (132)
T ss_pred hccchHHHHHh--ccCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34556666655 457888899999999999999999999886 566666656666677777776665543
No 54
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=20.28 E-value=2.1e+02 Score=22.17 Aligned_cols=81 Identities=12% Similarity=0.077 Sum_probs=49.0
Q ss_pred eccCcchhhhhHHHHHHHHHHhhchhhhhhhheEcCCccccchhhHHHHHHHHHHHHHHhcccCCCeE-EeehhHHHHHH
Q 026694 130 FDSNGRRLFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFKDDPFI-YVPNGIGTLLG 208 (235)
Q Consensus 130 ~~~~~~~~~~G~~~~~~~i~~f~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~~d~~v-~~~N~~G~~l~ 208 (235)
.++..--.++.+++-+.++-+.- .|-++.-..|++|.......++.. +.|....+..+. +.+|.+-..+.
T Consensus 30 ~~s~VpFSiFPlIaLvLavy~Ly------Q~Yl~~~m~eg~P~~a~acFflG~---f~ySA~vraqyPeiGSNFfp~il~ 100 (117)
T PF07226_consen 30 FSSEVPFSIFPLIALVLAVYCLY------QRYLNHPMPEGTPKLALACFFLGL---FGYSAFVRAQYPEIGSNFFPSILC 100 (117)
T ss_pred HhcccccHHHHHHHHHHHHHHHH------HHHhcCCCCCCChHHHHHHHHHHH---HHHHHHHHHhchhhhhhHHHHHHH
Confidence 33455567777888777776542 344555666787766655555544 467766654444 45899998865
Q ss_pred HHHHHhheeecCC
Q 026694 209 IAQVMLYSYYSTK 221 (235)
Q Consensus 209 ~~ql~l~~~y~~~ 221 (235)
++ .++|++.+-
T Consensus 101 l~--L~~Wi~~kl 111 (117)
T PF07226_consen 101 LI--LVFWIGYKL 111 (117)
T ss_pred HH--HHHHHHHHH
Confidence 54 344555443
No 55
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=20.16 E-value=5.8e+02 Score=24.22 Aligned_cols=51 Identities=22% Similarity=0.340 Sum_probs=25.0
Q ss_pred hhhhHHHHHHHHHHhhchhhhhhhheEcCCccccchhhHHHHHHHHHHHHHHhccc-CCCeEE
Q 026694 137 LFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFK-DDPFIY 198 (235)
Q Consensus 137 ~~~G~~~~~~~i~~f~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~-~d~~v~ 198 (235)
-.+.-.+++.-+..|. ..+.|.|.. ...++..+..+-=.+|+++. +|..++
T Consensus 355 YliAa~a~i~Li~~Y~------~~vl~~~k~-----~~~~~~~L~~LY~~Ly~lLq~EdyALL 406 (430)
T PF06123_consen 355 YLIAALACIGLISLYL------SSVLKSWKR-----GLIFAGLLAALYGFLYVLLQSEDYALL 406 (430)
T ss_pred HHHHHHHHHHHHHHHH------HHHHhcchH-----HHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3333444444455554 344454433 23344555555555666665 565554
Done!