Query 026694
Match_columns 235
No_of_seqs 173 out of 1522
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 19:48:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 19.3 56 0.0019 28.5 2.5 21 204-224 413-433 (445)
2 1afo_A Glycophorin A; integral 8.1 3.8E+02 0.013 15.8 3.0 25 7-31 7-31 (40)
3 3qrx_B Melittin; calcium-bindi 8.0 3E+02 0.01 14.5 2.3 16 30-45 10-25 (26)
4 2klu_A T-cell surface glycopro 7.7 1.8E+02 0.0063 19.3 1.6 27 191-218 3-29 (70)
5 2nr1_A NR1 M2, M2; receptor, s 7.6 1.1E+02 0.0037 16.6 0.4 13 180-192 9-21 (27)
6 3bkd_A Transmembrane domain of 6.5 56 0.0019 17.4 -1.1 14 193-206 2-15 (26)
7 2ks1_B Epidermal growth factor 6.2 2.3E+02 0.008 17.0 1.5 7 198-204 13-19 (44)
8 3dh4_A Sodium/glucose cotransp 6.2 1.4E+03 0.046 20.5 7.6 22 194-215 447-468 (530)
9 1pjn_A Histone-binding protein 5.8 3.6E+02 0.012 14.4 1.8 16 219-235 1-16 (26)
10 4h33_A LMO2059 protein; bilaye 5.7 4.3E+02 0.015 19.2 3.1 57 113-169 47-103 (137)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=19.33 E-value=56 Score=28.46 Aligned_cols=21 Identities=5% Similarity=0.059 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhheeecCCCCC
Q 026694 204 GTLLGIAQVMLYSYYSTKSGE 224 (235)
Q Consensus 204 G~~l~~~ql~l~~~y~~~~~~ 224 (235)
|...-..-+..|+.+++++++
T Consensus 413 ~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 413 SFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHhhhccc
Confidence 444444444555555544433
No 2
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=8.06 E-value=3.8e+02 Score=15.76 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=16.3
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHc
Q 026694 7 SSIYSGCSVAAGVTGNIFAFVLFVS 31 (235)
Q Consensus 7 ~~~~~~~~~i~g~~~~i~ti~~~~s 31 (235)
|+-+....-+++..|.+..+.++.|
T Consensus 7 fs~p~i~lII~~vmaGiIG~IllI~ 31 (40)
T 1afo_A 7 FSEPEITLIIFGVMAGVIGTILLIS 31 (40)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHH
Confidence 4555566677788777776666544
No 3
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=7.99 E-value=3e+02 Score=14.48 Aligned_cols=16 Identities=13% Similarity=0.362 Sum_probs=12.4
Q ss_pred HccHHHHHHHHHhcCc
Q 026694 30 VSPIPTFRRILRNKST 45 (235)
Q Consensus 30 ~splp~~~~i~k~kst 45 (235)
...+|.+..++|+|..
T Consensus 10 a~~LP~liSWiK~kr~ 25 (26)
T 3qrx_B 10 TTGLPALISWIKRKRQ 25 (26)
T ss_pred HccchHHHHHHHHHhc
Confidence 3467999999998863
No 4
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=7.71 E-value=1.8e+02 Score=19.28 Aligned_cols=27 Identities=7% Similarity=0.118 Sum_probs=12.3
Q ss_pred ccCCCeEEeehhHHHHHHHHHHHhheee
Q 026694 191 FKDDPFIYVPNGIGTLLGIAQVMLYSYY 218 (235)
Q Consensus 191 l~~d~~v~~~N~~G~~l~~~ql~l~~~y 218 (235)
+...++.+. -++|...++.-++-+.+|
T Consensus 3 l~~~~p~~L-ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 3 LVPRGSMAL-IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp SSCCCSSHH-HHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHH-HHHhHHHHHHHHHHHHHH
Confidence 344444443 355555555444433333
No 5
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=7.61 E-value=1.1e+02 Score=16.62 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=9.4
Q ss_pred HHHHHHHHHhccc
Q 026694 180 LMSLSFLAYGMFK 192 (235)
Q Consensus 180 ~n~~~W~~YG~l~ 192 (235)
+.+.+|+.+|.+.
T Consensus 9 l~aa~wF~WGvll 21 (27)
T 2nr1_A 9 LSSAMWFSWGVLL 21 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhe
Confidence 4567898888764
No 6
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=6.50 E-value=56 Score=17.39 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=10.3
Q ss_pred CCCeEEeehhHHHH
Q 026694 193 DDPFIYVPNGIGTL 206 (235)
Q Consensus 193 ~d~~v~~~N~~G~~ 206 (235)
+|..++.+|.+|++
T Consensus 2 sDplv~aa~iiGil 15 (26)
T 3bkd_A 2 SDPLVVAASIMGIL 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHH
Confidence 46667778888875
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=6.25 E-value=2.3e+02 Score=17.01 Aligned_cols=7 Identities=14% Similarity=0.292 Sum_probs=3.2
Q ss_pred EeehhHH
Q 026694 198 YVPNGIG 204 (235)
Q Consensus 198 ~~~N~~G 204 (235)
+..-++|
T Consensus 13 IA~gVVg 19 (44)
T 2ks1_B 13 IATGMVG 19 (44)
T ss_dssp STHHHHH
T ss_pred EEeehhH
Confidence 3344555
No 8
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=6.19 E-value=1.4e+03 Score=20.46 Aligned_cols=22 Identities=5% Similarity=-0.137 Sum_probs=12.0
Q ss_pred CCeEEeehhHHHHHHHHHHHhh
Q 026694 194 DPFIYVPNGIGTLLGIAQVMLY 215 (235)
Q Consensus 194 d~~v~~~N~~G~~l~~~ql~l~ 215 (235)
|..-.-++.+++.++.+-....
T Consensus 447 ~~~~~~~~~~~~~~~~i~~v~v 468 (530)
T 3dh4_A 447 SMPFMDQMLYTLLFTMVVIAFT 468 (530)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHH
Confidence 4333335677777666554443
No 9
>1pjn_A Histone-binding protein N1/N2; importin alpha/karyopherin alpha, nuclear localization sequence (NLS) recognition, bipartite NLS; 2.50A {Synthetic}
Probab=5.82 E-value=3.6e+02 Score=14.39 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCCC
Q 026694 219 STKSGEVSRQPLIDSFA 235 (235)
Q Consensus 219 ~~~~~~~~~~~~~~~~~ 235 (235)
+++.++..|.|..| -|
T Consensus 1 RKKrkp~Ees~~~d-~a 16 (26)
T 1pjn_A 1 RKKRKTEEESPLKD-KA 16 (26)
T ss_dssp CCCCCCSSCCSCCC-CS
T ss_pred CCCcCCccccchHH-HH
No 10
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=5.73 E-value=4.3e+02 Score=19.22 Aligned_cols=57 Identities=5% Similarity=-0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhheeeeccCcchhhhhHHHHHHHHHHhhchhhhhhhheEcCCccc
Q 026694 113 IAVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPLFIIKLVIKTRSVEF 169 (235)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~i~~f~sPl~~i~~viktks~~~ 169 (235)
+.-.++.++..+.|-+..+.....+++..+..+.++..++.+...+-..+++++.+.
T Consensus 47 a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 103 (137)
T 4h33_A 47 ALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTN 103 (137)
T ss_dssp HHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC-
T ss_pred HHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!