Query 026694
Match_columns 235
No_of_seqs 173 out of 1522
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 19:48:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026694.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026694hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftb2 f.17.2.1 (B:27-117) Cy 19.5 24 0.0017 23.0 1.9 19 212-230 37-55 (91)
2 d1vf5c3 f.23.23.1 (C:250-286) 8.1 1.7E+02 0.013 15.6 4.0 30 15-49 5-34 (37)
3 d1xioa_ f.13.1.1 (A:) Sensory 6.6 4.4E+02 0.032 18.9 7.0 34 157-191 149-182 (226)
4 d1ppjc1 f.32.1.1 (C:261-379) M 6.4 1.7E+02 0.013 19.5 3.0 37 122-158 73-111 (119)
5 d3cx5c1 f.32.1.1 (C:262-385) M 5.9 2E+02 0.015 19.2 3.2 30 123-152 74-103 (124)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 4.3 2.1E+02 0.015 14.1 1.5 8 89-96 15-22 (30)
7 d1rzhh2 f.23.10.1 (H:11-35) Ph 4.2 2.5E+02 0.018 13.5 1.8 8 60-67 5-12 (26)
8 d1q90a3 f.23.23.1 (A:248-292) 4.1 1.8E+02 0.013 16.1 1.4 28 16-48 5-32 (45)
9 d2axtm1 f.23.35.1 (M:1-36) Pho 3.8 2.6E+02 0.019 14.7 1.8 13 81-93 3-15 (36)
10 d2croa_ a.35.1.2 (A:) cro 434 3.2 2.3E+02 0.017 16.0 1.4 34 34-67 31-64 (65)
No 1
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=19.49 E-value=24 Score=22.95 Aligned_cols=19 Identities=16% Similarity=0.147 Sum_probs=10.1
Q ss_pred HHhheeecCCCCCCCCCCC
Q 026694 212 VMLYSYYSTKSGEVSRQPL 230 (235)
Q Consensus 212 l~l~~~y~~~~~~~~~~~~ 230 (235)
+...++|++++.++..+|+
T Consensus 37 ~~~~~ryR~~~~~~~~~~~ 55 (91)
T d1fftb2 37 VGFAWKYRASNKDAKYSPN 55 (91)
T ss_dssp HTTTTTTTTSTTTCSSCCC
T ss_pred HhhheeeeccCCccCCCCc
Confidence 3344566666555554553
No 2
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.09 E-value=1.7e+02 Score=15.58 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHhcCcCCCC
Q 026694 15 VAAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFS 49 (235)
Q Consensus 15 ~i~g~~~~i~ti~~~~splp~~~~i~k~kst~~~s 49 (235)
.+-|.++..+++. +.|+.-+.|+|..+++.
T Consensus 5 Rv~gl~~F~~~v~-----laQi~lVlKKKQ~EkVQ 34 (37)
T d1vf5c3 5 RVKWMIAFICLVM-----LAQLMLILKKKQVEKVQ 34 (37)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHTGGGCTTG
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 3456666666653 47888899999998875
No 3
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=6.57 E-value=4.4e+02 Score=18.94 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=18.0
Q ss_pred hhhhheEcCCccccchhhHHHHHHHHHHHHHHhcc
Q 026694 157 IIKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMF 191 (235)
Q Consensus 157 ~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l 191 (235)
..++..++++.+ ....-.....+...+|..|++.
T Consensus 149 ~~~~~~~~~~~~-~~~~~~~l~~~~~v~W~~YPi~ 182 (226)
T d1xioa_ 149 PLRAKTRTQSSE-LANLYDKLVTYFTVLWIGYPIV 182 (226)
T ss_dssp HHHHHHTTSCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444322 2233334445566899999865
No 4
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.45 E-value=1.7e+02 Score=19.55 Aligned_cols=37 Identities=11% Similarity=0.044 Sum_probs=25.3
Q ss_pred HHhhheeeeccCcchhhhhHHHHHHHHHHhh--chhhhh
Q 026694 122 IVFTSMEVFDSNGRRLFVGYLSVASLISMFA--SPLFII 158 (235)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~G~~~~~~~i~~f~--sPl~~i 158 (235)
+.+++...++.|..-..+|.++++.=...+. -|+.+.
T Consensus 73 i~L~wlG~~p~e~p~~~~gqi~tv~YF~~flillP~~~~ 111 (119)
T d1ppjc1 73 LTLTWIGGQPVEHPYITIGQLASVLYFLLILVLMPTAGT 111 (119)
T ss_dssp HHHHHHHTSCSCTTHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777788888899998888765543 454443
No 5
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.94 E-value=2e+02 Score=19.23 Aligned_cols=30 Identities=7% Similarity=0.180 Sum_probs=23.0
Q ss_pred HhhheeeeccCcchhhhhHHHHHHHHHHhh
Q 026694 123 VFTSMEVFDSNGRRLFVGYLSVASLISMFA 152 (235)
Q Consensus 123 ~~~~~~~~~~~~~~~~~G~~~~~~~i~~f~ 152 (235)
.+++...++.|.-...+|.++++.-...|.
T Consensus 74 ~LtwlG~~p~e~p~~~~gqi~s~~YF~~Fl 103 (124)
T d3cx5c1 74 LLGQIGACHVEVPYVLMGQIATFIYFAYFL 103 (124)
T ss_dssp HHHHHHTSCSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 356666777788888999998888777764
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.26 E-value=2.1e+02 Score=14.11 Aligned_cols=8 Identities=38% Similarity=0.920 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 026694 89 QLIYVSIF 96 (235)
Q Consensus 89 ~~~~~~~~ 96 (235)
++++..+|
T Consensus 15 ~lfffaif 22 (30)
T d2axtt1 15 ALFFFAIF 22 (30)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 7
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.24 E-value=2.5e+02 Score=13.51 Aligned_cols=8 Identities=13% Similarity=0.023 Sum_probs=4.0
Q ss_pred HHHHHHHh
Q 026694 60 CLITLWYG 67 (235)
Q Consensus 60 ~~~W~~YG 67 (235)
...|+.|+
T Consensus 5 laiw~fw~ 12 (26)
T d1rzhh2 5 LAIYSFWI 12 (26)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34555555
No 8
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.14 E-value=1.8e+02 Score=16.14 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHhcCcCCC
Q 026694 16 AAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQF 48 (235)
Q Consensus 16 i~g~~~~i~ti~~~~splp~~~~i~k~kst~~~ 48 (235)
+-|.++..+++. +.|+.-+.|+|..+++
T Consensus 5 v~gll~F~~~v~-----laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 5 IQGLLVFFSFVL-----LTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 445566665553 4788888898877654
No 9
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.77 E-value=2.6e+02 Score=14.66 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=7.3
Q ss_pred ecchhhHHHHHHH
Q 026694 81 VNSVGAVFQLIYV 93 (235)
Q Consensus 81 ~N~~g~~l~~~~~ 93 (235)
+|..|++....++
T Consensus 3 vN~Lg~iAt~LFi 15 (36)
T d2axtm1 3 VNQLGLIATALFV 15 (36)
T ss_dssp CCTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 4666666655444
No 10
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=3.24 E-value=2.3e+02 Score=15.98 Aligned_cols=34 Identities=15% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCcCCCCchhHHHHHHHHHHHHHHh
Q 026694 34 PTFRRILRNKSTEQFSGLPYICSLLNCLITLWYG 67 (235)
Q Consensus 34 p~~~~i~k~kst~~~s~~p~~~~~~n~~~W~~YG 67 (235)
.++.++.+.++...-...-+.-.+-...-|+++|
T Consensus 31 ~ti~~~E~g~~~~~~~l~~ia~~l~v~~~~Ll~G 64 (65)
T d2croa_ 31 QSIQLIEAGVTKRPRFLFEIAMALNCDPVWLQYG 64 (65)
T ss_dssp HHHHHHHTTCCSSCTTHHHHHHHTTSCHHHHHHC
T ss_pred hHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHhhC
Done!