Query 026695
Match_columns 235
No_of_seqs 255 out of 1604
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 11:25:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 100.0 1.6E-27 3.4E-32 194.3 14.5 128 100-235 6-135 (142)
2 PRK10743 heat shock protein Ib 99.9 2.4E-27 5.3E-32 192.2 13.7 102 130-235 35-137 (137)
3 COG0071 IbpA Molecular chapero 99.9 7.2E-27 1.6E-31 190.8 15.5 108 128-235 39-146 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 7.2E-25 1.6E-29 165.6 12.4 91 131-221 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 9.6E-24 2.1E-28 161.2 13.6 101 133-235 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 9.7E-24 2.1E-28 159.4 12.1 91 130-221 1-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 9.2E-23 2E-27 153.8 12.9 89 130-221 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 3.5E-22 7.7E-27 149.8 11.3 82 133-221 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 1.2E-21 2.6E-26 145.9 11.4 82 133-221 1-83 (83)
10 cd06479 ACD_HspB7_like Alpha c 99.9 7.6E-22 1.6E-26 146.6 9.8 79 133-221 2-81 (81)
11 cd06498 ACD_alphaB-crystallin_ 99.9 1.8E-21 4E-26 145.4 11.3 82 134-222 2-84 (84)
12 cd06475 ACD_HspB1_like Alpha c 99.9 6.1E-21 1.3E-25 143.1 11.2 82 132-220 3-85 (86)
13 cd06481 ACD_HspB9_like Alpha c 99.8 7.3E-21 1.6E-25 143.0 10.7 83 136-221 4-87 (87)
14 cd06476 ACD_HspB2_like Alpha c 99.8 1.3E-20 2.9E-25 140.5 11.1 81 134-221 2-83 (83)
15 cd06464 ACD_sHsps-like Alpha-c 99.8 3.7E-20 7.9E-25 136.2 12.0 88 133-221 1-88 (88)
16 cd06482 ACD_HspB10 Alpha cryst 99.8 3E-20 6.5E-25 139.8 10.8 80 137-220 6-86 (87)
17 cd06526 metazoan_ACD Alpha-cry 99.8 8.4E-20 1.8E-24 135.5 9.4 78 137-221 5-83 (83)
18 cd06477 ACD_HspB3_Like Alpha c 99.8 1.7E-19 3.7E-24 134.6 10.9 79 135-220 3-82 (83)
19 KOG0710 Molecular chaperone (s 99.7 5.4E-18 1.2E-22 145.1 7.2 110 126-235 81-195 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.7 4.8E-17 1E-21 123.3 10.6 81 134-221 10-91 (91)
21 KOG3591 Alpha crystallins [Pos 99.7 4.2E-16 9.1E-21 131.0 11.6 98 131-235 64-162 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.5 7.2E-14 1.6E-18 98.8 10.6 79 135-221 2-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.3 2.8E-11 6.1E-16 87.8 9.6 70 135-224 2-71 (78)
24 cd06463 p23_like Proteins cont 99.0 4.7E-09 1E-13 75.7 9.9 75 135-224 2-76 (84)
25 PF05455 GvpH: GvpH; InterPro 99.0 5E-09 1.1E-13 88.0 9.9 78 129-226 91-172 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 4E-08 8.7E-13 71.9 8.5 77 133-224 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.3 1.6E-05 3.5E-10 56.6 11.8 76 131-221 2-79 (79)
28 PF08190 PIH1: pre-RNA process 98.1 1.7E-05 3.6E-10 72.0 8.9 66 137-220 259-327 (328)
29 cd06465 p23_hB-ind1_like p23_l 98.1 5E-05 1.1E-09 58.6 10.4 77 131-223 2-78 (108)
30 cd06489 p23_CS_hSgt1_like p23_ 98.0 6.6E-05 1.4E-09 55.2 9.5 77 133-224 1-77 (84)
31 cd06467 p23_NUDC_like p23_like 97.7 0.00033 7.2E-09 51.2 9.2 73 134-224 3-77 (85)
32 cd06488 p23_melusin_like p23_l 97.6 0.0008 1.7E-08 50.1 10.2 79 132-225 3-81 (87)
33 cd06468 p23_CacyBP p23_like do 97.6 0.00071 1.5E-08 50.4 9.9 77 133-224 5-85 (92)
34 cd06493 p23_NUDCD1_like p23_NU 97.6 0.0011 2.3E-08 49.1 9.7 74 134-225 3-78 (85)
35 cd00237 p23 p23 binds heat sho 97.0 0.013 2.8E-07 45.6 10.5 78 130-224 2-79 (106)
36 cd06494 p23_NUDCD2_like p23-li 96.9 0.014 3E-07 44.3 9.8 73 133-224 9-83 (93)
37 PLN03088 SGT1, suppressor of 96.5 0.019 4E-07 53.3 9.6 80 130-224 157-236 (356)
38 KOG1309 Suppressor of G2 allel 96.4 0.012 2.7E-07 49.8 7.0 79 130-223 4-82 (196)
39 cd06490 p23_NCB5OR p23_like do 96.2 0.093 2E-06 39.0 10.4 76 133-225 2-81 (87)
40 cd06492 p23_mNUDC_like p23-lik 95.9 0.1 2.2E-06 38.9 9.3 73 134-224 3-79 (87)
41 cd06495 p23_NUDCD3_like p23-li 93.8 0.79 1.7E-05 35.3 9.2 76 134-224 9-87 (102)
42 KOG3158 HSP90 co-chaperone p23 85.7 3.1 6.6E-05 35.3 6.5 77 131-224 9-85 (180)
43 PF13349 DUF4097: Domain of un 81.9 11 0.00025 30.0 8.4 79 133-218 69-147 (166)
44 cd06482 ACD_HspB10 Alpha cryst 79.9 4 8.8E-05 30.5 4.7 34 190-224 9-42 (87)
45 cd06470 ACD_IbpA-B_like Alpha- 76.0 6.2 0.00013 29.2 4.7 35 190-225 12-46 (90)
46 KOG1667 Zn2+-binding protein M 74.2 17 0.00037 32.8 7.6 82 131-226 216-297 (320)
47 cd06476 ACD_HspB2_like Alpha c 73.9 8.7 0.00019 28.2 5.0 32 190-222 8-39 (83)
48 cd06477 ACD_HspB3_Like Alpha c 72.8 8.1 0.00018 28.5 4.6 32 191-223 9-40 (83)
49 cd06497 ACD_alphaA-crystallin_ 72.8 8.8 0.00019 28.3 4.8 32 190-222 11-42 (86)
50 cd06478 ACD_HspB4-5-6 Alpha-cr 71.0 10 0.00022 27.7 4.8 32 190-222 8-39 (83)
51 COG5091 SGT1 Suppressor of G2 71.0 2.4 5.2E-05 38.7 1.6 79 131-223 178-256 (368)
52 PRK10743 heat shock protein Ib 69.8 11 0.00024 30.4 5.1 32 191-223 47-78 (137)
53 cd06479 ACD_HspB7_like Alpha c 69.8 11 0.00025 27.6 4.8 32 191-223 10-41 (81)
54 cd06526 metazoan_ACD Alpha-cry 66.9 12 0.00027 26.9 4.5 34 190-224 8-41 (83)
55 KOG2265 Nuclear distribution p 65.6 36 0.00078 28.9 7.5 73 134-224 23-97 (179)
56 cd06475 ACD_HspB1_like Alpha c 65.3 18 0.00038 26.7 5.1 33 190-223 11-43 (86)
57 PF14913 DPCD: DPCD protein fa 65.0 39 0.00085 29.1 7.6 71 134-223 91-170 (194)
58 cd06498 ACD_alphaB-crystallin_ 64.9 13 0.00027 27.4 4.2 31 190-221 8-38 (84)
59 cd06472 ACD_ScHsp26_like Alpha 62.8 21 0.00046 26.2 5.1 33 190-223 10-43 (92)
60 cd06471 ACD_LpsHSP_like Group 62.4 13 0.00027 27.3 3.8 30 139-168 62-91 (93)
61 PRK11597 heat shock chaperone 62.2 18 0.0004 29.4 5.0 32 191-223 45-76 (142)
62 cd06481 ACD_HspB9_like Alpha c 61.5 20 0.00043 26.5 4.7 32 191-223 9-40 (87)
63 cd06464 ACD_sHsps-like Alpha-c 57.6 27 0.00058 24.5 4.8 34 190-224 8-41 (88)
64 PF04972 BON: BON domain; Int 57.3 21 0.00047 24.0 4.1 27 148-174 12-38 (64)
65 COG0071 IbpA Molecular chapero 56.7 27 0.00059 28.0 5.2 32 191-223 52-83 (146)
66 PF00011 HSP20: Hsp20/alpha cr 55.0 31 0.00067 25.4 4.9 32 190-222 8-39 (102)
67 PF01954 DUF104: Protein of un 53.6 14 0.0003 25.8 2.5 30 204-234 3-32 (60)
68 COG4004 Uncharacterized protei 47.8 60 0.0013 24.8 5.3 31 134-168 28-58 (96)
69 PRK05518 rpl6p 50S ribosomal p 46.9 89 0.0019 26.5 6.9 45 152-220 13-57 (180)
70 PF12992 DUF3876: Domain of un 45.5 63 0.0014 24.6 5.3 39 129-167 25-68 (95)
71 TIGR03653 arch_L6P archaeal ri 45.4 1E+02 0.0023 25.8 7.1 45 152-220 7-51 (170)
72 cd00298 ACD_sHsps_p23-like Thi 44.9 45 0.00097 22.1 4.1 32 138-169 47-79 (80)
73 cd02178 GH16_beta_agarase Beta 44.3 94 0.002 27.3 7.0 44 157-200 60-110 (258)
74 TIGR03654 L6_bact ribosomal pr 43.1 1.1E+02 0.0023 25.7 6.8 44 152-220 11-54 (175)
75 cd06469 p23_DYX1C1_like p23_li 42.4 69 0.0015 22.2 4.9 33 139-171 36-69 (78)
76 cd06480 ACD_HspB8_like Alpha-c 40.6 56 0.0012 24.5 4.3 30 139-168 58-89 (91)
77 PF08308 PEGA: PEGA domain; I 40.3 94 0.002 21.3 5.2 36 136-171 32-68 (71)
78 PTZ00027 60S ribosomal protein 40.0 1E+02 0.0023 26.3 6.4 47 152-220 13-59 (190)
79 PRK05498 rplF 50S ribosomal pr 38.9 1.2E+02 0.0026 25.4 6.5 44 152-220 12-55 (178)
80 cd06467 p23_NUDC_like p23_like 38.2 65 0.0014 22.8 4.2 30 191-220 10-39 (85)
81 PRK10568 periplasmic protein; 37.9 54 0.0012 28.0 4.4 26 148-173 73-98 (203)
82 KOG3260 Calcyclin-binding prot 37.6 1.5E+02 0.0032 25.6 6.8 74 136-224 81-155 (224)
83 KOG3413 Mitochondrial matrix p 36.3 16 0.00035 30.1 0.8 22 199-220 67-88 (156)
84 cd02175 GH16_lichenase lichena 36.0 97 0.0021 26.2 5.6 47 152-200 31-80 (212)
85 KOG3591 Alpha crystallins [Pos 35.7 60 0.0013 27.3 4.2 34 141-174 117-152 (173)
86 CHL00140 rpl6 ribosomal protei 33.6 1E+02 0.0022 25.9 5.3 44 152-220 12-55 (178)
87 cd06463 p23_like Proteins cont 32.4 1.1E+02 0.0025 20.7 4.7 36 138-173 40-76 (84)
88 cd06466 p23_CS_SGT1_like p23_l 30.6 1E+02 0.0023 21.5 4.3 35 138-172 41-76 (84)
89 PF12624 Chorein_N: N-terminal 29.3 84 0.0018 24.2 3.8 22 148-169 18-39 (118)
90 PF01491 Frataxin_Cyay: Fratax 27.6 71 0.0015 24.6 3.1 18 204-221 30-47 (109)
91 cd00503 Frataxin Frataxin is a 27.4 59 0.0013 25.0 2.6 17 204-220 28-44 (105)
92 PF14730 DUF4468: Domain of un 26.6 2.3E+02 0.0049 20.8 5.6 17 205-221 69-85 (91)
93 TIGR00251 conserved hypothetic 26.6 1.3E+02 0.0029 22.4 4.3 38 134-172 1-41 (87)
94 PTZ00179 60S ribosomal protein 26.2 2.2E+02 0.0047 24.3 6.1 47 152-220 12-58 (189)
95 PRK00446 cyaY frataxin-like pr 25.4 62 0.0013 25.0 2.4 16 206-221 29-44 (105)
96 COG0097 RplF Ribosomal protein 24.9 1.7E+02 0.0037 24.9 5.1 20 151-170 11-30 (178)
97 TIGR03421 FeS_CyaY iron donor 24.6 62 0.0013 24.8 2.2 17 205-221 26-42 (102)
98 cd08023 GH16_laminarinase_like 24.3 3.5E+02 0.0075 22.9 7.1 49 150-200 35-91 (235)
99 cd06494 p23_NUDCD2_like p23-li 24.2 1.4E+02 0.0031 22.3 4.1 29 191-219 17-45 (93)
100 PF06964 Alpha-L-AF_C: Alpha-L 24.0 1.3E+02 0.0028 24.6 4.2 27 196-222 150-176 (177)
101 PRK11198 LysM domain/BON super 23.9 94 0.002 25.1 3.3 27 148-174 38-64 (147)
102 TIGR02934 nifT_nitrog probable 23.1 73 0.0016 22.8 2.2 22 211-233 9-30 (67)
103 cd00413 Glyco_hydrolase_16 gly 22.0 2.1E+02 0.0045 23.6 5.2 48 151-200 28-79 (210)
104 cd02177 GH16_kappa_carrageenas 20.8 4.3E+02 0.0093 23.7 7.2 44 156-199 45-103 (269)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.95 E-value=1.6e-27 Score=194.26 Aligned_cols=128 Identities=17% Similarity=0.220 Sum_probs=102.2
Q ss_pred ccCCC-chhHHHHHHHHHHHHhhhcCCCCCCcccceEE-eCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccC
Q 026695 100 FFPSG-LGNALMQATENINRIFENLNFTPSQLMGWVKE-QDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEES 177 (235)
Q Consensus 100 ~~P~~-~~~~~~~~~~~mdr~f~~~~~~~~~p~~dI~e-~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~ 177 (235)
++||. .+..|+++++.|++.+ .+...|++||+| +++.|+|.++|||++++||+|++++|.|+|+|+++.+. +
T Consensus 6 ~~~~~~~~~~~d~l~~~~~~~~----~~~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~--~ 79 (142)
T PRK11597 6 LSPLLRQWIGFDKLANALQNAG----ESQSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPE--K 79 (142)
T ss_pred cchhhcccccHHHHHHHhcccC----ccCCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEcccc--C
Confidence 44532 2334555555554332 244557788998 57899999999999999999999999999999976432 4
Q ss_pred CCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeCCEEEEEEeccCCCCCCceEEecC
Q 026695 178 SDDEHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRIH 235 (235)
Q Consensus 178 ~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lPK~~~~~~~~~~I~Ie 235 (235)
+.+++++||.+|+|.|+|.||++||.+ +|+|+||||+|+|||..++..+.++|+|+
T Consensus 80 ~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~nGVL~I~lPK~~~~~~~~rkI~I~ 135 (142)
T PRK11597 80 EVKWLHQGLVNQPFSLSFTLAENMEVS--GATFVNGLLHIDLIRNEPEAIAPQRIAIS 135 (142)
T ss_pred CCcEEEEEEeCcEEEEEEECCCCcccC--cCEEcCCEEEEEEeccCccccCCcEEEEC
Confidence 567999999999999999999999998 79999999999999986555557788875
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.95 E-value=2.4e-27 Score=192.16 Aligned_cols=102 Identities=21% Similarity=0.379 Sum_probs=91.3
Q ss_pred cccceEE-eCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEE
Q 026695 130 LMGWVKE-QDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKA 208 (235)
Q Consensus 130 p~~dI~e-~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A 208 (235)
|++||.+ ++++|+|+++|||++++||+|++++|.|+|+|+++.+. ++.+++++||.+|+|.|+|.||++||.+ +|
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~--~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~A 110 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQ--KERTYLYQGIAERNFERKFQLAENIHVR--GA 110 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccc--cCCcEEEEEEECCEEEEEEECCCCcccC--cC
Confidence 6788994 89999999999999999999999999999999987643 3467899999999999999999999999 59
Q ss_pred EEeCCEEEEEEeccCCCCCCceEEecC
Q 026695 209 ELKNGVLNIVIPRTEKPKQDVKEVRIH 235 (235)
Q Consensus 209 ~~~nGVL~I~lPK~~~~~~~~~~I~Ie 235 (235)
+|+||||+|+|||.+++..+.++|+|+
T Consensus 111 ~~~dGVL~I~lPK~~~~~~~~r~I~I~ 137 (137)
T PRK10743 111 NLVNGLLYIDLERVIPEAKKPRRIEIN 137 (137)
T ss_pred EEeCCEEEEEEeCCCccccCCeEEeeC
Confidence 999999999999986655567888885
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.2e-27 Score=190.79 Aligned_cols=108 Identities=33% Similarity=0.630 Sum_probs=99.8
Q ss_pred CCcccceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceE
Q 026695 128 SQLMGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIK 207 (235)
Q Consensus 128 ~~p~~dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~ 207 (235)
+.|++||++++++|+|.++||||+++||+|+++++.|+|+|+++.+...++..++++|+.+|.|+|+|.||+.|+++.|+
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~ 118 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIK 118 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECccccccccee
Confidence 56788899999999999999999999999999999999999999866556788999999999999999999999999999
Q ss_pred EEEeCCEEEEEEeccCCCCCCceEEecC
Q 026695 208 AELKNGVLNIVIPRTEKPKQDVKEVRIH 235 (235)
Q Consensus 208 A~~~nGVL~I~lPK~~~~~~~~~~I~Ie 235 (235)
|+|+||||+|+|||.+++..+.+.|+|+
T Consensus 119 A~~~nGvL~I~lpk~~~~~~~~~~i~I~ 146 (146)
T COG0071 119 AKYKNGLLTVTLPKAEPEEKKPKRIEIE 146 (146)
T ss_pred eEeeCcEEEEEEeccccccccCceeecC
Confidence 9999999999999999886667777774
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.92 E-value=7.2e-25 Score=165.58 Aligned_cols=91 Identities=45% Similarity=0.693 Sum_probs=84.3
Q ss_pred ccceEEeCcEEEEEEEeCCCCCCcEEEEEECC-EEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEE
Q 026695 131 MGWVKEQDDCYKLRYDVPGLGKDDVKITIHDG-VLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAE 209 (235)
Q Consensus 131 ~~dI~e~~d~y~I~~dLPGv~kedI~V~v~~~-~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~ 209 (235)
++||+|++++|+|.++|||++++||+|+++++ .|+|+|+++.+...++..++..|+.+|.|.|+|.||.+||+++|+|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 36899999999999999999999999999965 99999998776555567888999999999999999999999999999
Q ss_pred EeCCEEEEEEec
Q 026695 210 LKNGVLNIVIPR 221 (235)
Q Consensus 210 ~~nGVL~I~lPK 221 (235)
|+||||+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999998
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.91 E-value=9.6e-24 Score=161.20 Aligned_cols=101 Identities=42% Similarity=0.722 Sum_probs=83.9
Q ss_pred ceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeC
Q 026695 133 WVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKN 212 (235)
Q Consensus 133 dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~n 212 (235)
||.+++++|.|.++||||+++||+|+++++.|+|+|++. ....+..++..++.++.|.|+|.||+++|+++|+|.|+|
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~--~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~ 78 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRK--EEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYEN 78 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEE--GEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETT
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceee--eeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecC
Confidence 699999999999999999999999999999999999999 223346678888999999999999999999999999999
Q ss_pred CEEEEEEeccCCCCC-CceEEecC
Q 026695 213 GVLNIVIPRTEKPKQ-DVKEVRIH 235 (235)
Q Consensus 213 GVL~I~lPK~~~~~~-~~~~I~Ie 235 (235)
|+|+|++||...... ..+.|+|+
T Consensus 79 GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 79 GVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp SEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred CEEEEEEEccccccCCCCeEEEeC
Confidence 999999999987653 67888885
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.91 E-value=9.7e-24 Score=159.36 Aligned_cols=91 Identities=37% Similarity=0.662 Sum_probs=82.5
Q ss_pred cccceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeeccccc--CCCCeEEEEEEeeEEEEEEECCCCcccCceE
Q 026695 130 LMGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEE--SSDDEHWSARSYGYYNTSLALPDDAKADEIK 207 (235)
Q Consensus 130 p~~dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~--~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~ 207 (235)
+++||+|+++.|+|.++|||++++||+|.++++.|+|+|+++...+. ....++.+|+.+|.|.|+|.|| +++.+.|+
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~ 79 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIK 79 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCE
Confidence 35789999999999999999999999999999999999999865332 2346888999999999999999 79999999
Q ss_pred EEEeCCEEEEEEec
Q 026695 208 AELKNGVLNIVIPR 221 (235)
Q Consensus 208 A~~~nGVL~I~lPK 221 (235)
|+|+||+|+|++||
T Consensus 80 A~~~dGvL~I~lPK 93 (93)
T cd06471 80 AKYENGVLKITLPK 93 (93)
T ss_pred EEEECCEEEEEEcC
Confidence 99999999999998
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.90 E-value=9.2e-23 Score=153.84 Aligned_cols=89 Identities=26% Similarity=0.446 Sum_probs=81.3
Q ss_pred cccceEEeC-cEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEE
Q 026695 130 LMGWVKEQD-DCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKA 208 (235)
Q Consensus 130 p~~dI~e~~-d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A 208 (235)
|++||++++ +.|+|.++|||++++||+|.++++.|+|+|+++.... ++.+++.+|+.+|.|.|+|.||.+||.+ +|
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A 77 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEEN-EEREYLHRGIAKRAFERSFNLADHVKVK--GA 77 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccc-CCCcEEEEEEeceEEEEEEECCCCceEC--ee
Confidence 456799975 9999999999999999999999999999999988765 4567889999999999999999999885 99
Q ss_pred EEeCCEEEEEEec
Q 026695 209 ELKNGVLNIVIPR 221 (235)
Q Consensus 209 ~~~nGVL~I~lPK 221 (235)
+|+||+|+|+||+
T Consensus 78 ~~~~GvL~I~l~~ 90 (90)
T cd06470 78 ELENGLLTIDLER 90 (90)
T ss_pred EEeCCEEEEEEEC
Confidence 9999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.88 E-value=3.5e-22 Score=149.80 Aligned_cols=82 Identities=21% Similarity=0.426 Sum_probs=73.4
Q ss_pred ceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEE-e
Q 026695 133 WVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAEL-K 211 (235)
Q Consensus 133 dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~-~ 211 (235)
+|++++++|.|.++||||+++||+|++.++.|+|+|++.... ++.+++.+| |.|+|.||++||+++|+|+| +
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~--~~~~~~~~e-----f~R~~~LP~~Vd~~~i~A~~~~ 76 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQ--DDHGYISRE-----FHRRYRLPSNVDQSAITCSLSA 76 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccee--CCCCEEEEE-----EEEEEECCCCCChHHeEEEeCC
Confidence 599999999999999999999999999999999999975443 234455554 99999999999999999999 8
Q ss_pred CCEEEEEEec
Q 026695 212 NGVLNIVIPR 221 (235)
Q Consensus 212 nGVL~I~lPK 221 (235)
||||+|++||
T Consensus 77 dGvL~I~~PK 86 (86)
T cd06497 77 DGMLTFSGPK 86 (86)
T ss_pred CCEEEEEecC
Confidence 9999999998
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.87 E-value=1.2e-21 Score=145.94 Aligned_cols=82 Identities=22% Similarity=0.425 Sum_probs=72.4
Q ss_pred ceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEE-e
Q 026695 133 WVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAEL-K 211 (235)
Q Consensus 133 dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~-~ 211 (235)
+|.+++++|.|.++||||+++||+|++.++.|+|+|++..... +.+++.+| |.|+|.||.+||+++|+|+| +
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~--~~~~~~~e-----f~R~~~LP~~vd~~~i~A~~~~ 73 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQD--EHGFISRE-----FHRRYRLPPGVDPAAITSSLSA 73 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcC--CCCEEEEE-----EEEEEECCCCcChHHeEEEECC
Confidence 3789999999999999999999999999999999999764332 34455444 99999999999999999999 7
Q ss_pred CCEEEEEEec
Q 026695 212 NGVLNIVIPR 221 (235)
Q Consensus 212 nGVL~I~lPK 221 (235)
||||+|++||
T Consensus 74 dGvL~I~~PK 83 (83)
T cd06478 74 DGVLTISGPR 83 (83)
T ss_pred CCEEEEEecC
Confidence 9999999998
No 10
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.87 E-value=7.6e-22 Score=146.57 Aligned_cols=79 Identities=22% Similarity=0.429 Sum_probs=72.5
Q ss_pred ceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEE-e
Q 026695 133 WVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAEL-K 211 (235)
Q Consensus 133 dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~-~ 211 (235)
||.|+++.|.|.++||||+|+||+|+++++.|+|+|+++.+. +..+|+|.|+|.||.+||+++|+|+| +
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~----------~~~~g~F~R~~~LP~~vd~e~v~A~l~~ 71 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASD----------GTVMNTFTHKCQLPEDVDPTSVSSSLGE 71 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccC----------CCEEEEEEEEEECCCCcCHHHeEEEecC
Confidence 699999999999999999999999999999999999986432 12588999999999999999999997 9
Q ss_pred CCEEEEEEec
Q 026695 212 NGVLNIVIPR 221 (235)
Q Consensus 212 nGVL~I~lPK 221 (235)
||+|+|++++
T Consensus 72 ~GvL~I~~~~ 81 (81)
T cd06479 72 DGTLTIKARR 81 (81)
T ss_pred CCEEEEEecC
Confidence 9999999986
No 11
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.87 E-value=1.8e-21 Score=145.36 Aligned_cols=82 Identities=21% Similarity=0.444 Sum_probs=72.0
Q ss_pred eEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEe-C
Q 026695 134 VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELK-N 212 (235)
Q Consensus 134 I~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~-n 212 (235)
+.+++++|.|.++||||+++||+|++.++.|+|+|++..+.+ +.+++.+ .|.|+|.||.+||+++|+|+|+ |
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~--~~~~~~~-----eF~R~~~LP~~vd~~~i~A~~~~d 74 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQD--EHGFISR-----EFQRKYRIPADVDPLTITSSLSPD 74 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeC--CCCEEEE-----EEEEEEECCCCCChHHcEEEeCCC
Confidence 678899999999999999999999999999999998765432 3445443 4999999999999999999995 9
Q ss_pred CEEEEEEecc
Q 026695 213 GVLNIVIPRT 222 (235)
Q Consensus 213 GVL~I~lPK~ 222 (235)
|||+|++||+
T Consensus 75 GvL~I~lPk~ 84 (84)
T cd06498 75 GVLTVCGPRK 84 (84)
T ss_pred CEEEEEEeCC
Confidence 9999999985
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.85 E-value=6.1e-21 Score=143.08 Aligned_cols=82 Identities=21% Similarity=0.486 Sum_probs=72.3
Q ss_pred cceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEe
Q 026695 132 GWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELK 211 (235)
Q Consensus 132 ~dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~ 211 (235)
.||+|+++.|.|.++||||+++||+|++.++.|+|+|++..... ...+ ..++|.|+|.||++||+++|+|+|.
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~--~~~~-----~~~~f~R~f~LP~~vd~~~v~A~~~ 75 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQD--EHGF-----VSRCFTRKYTLPPGVDPTAVTSSLS 75 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcC--CCCE-----EEEEEEEEEECCCCCCHHHcEEEEC
Confidence 47999999999999999999999999999999999999865332 2222 2357999999999999999999996
Q ss_pred -CCEEEEEEe
Q 026695 212 -NGVLNIVIP 220 (235)
Q Consensus 212 -nGVL~I~lP 220 (235)
||||+|++|
T Consensus 76 ~dGvL~I~lP 85 (86)
T cd06475 76 PDGILTVEAP 85 (86)
T ss_pred CCCeEEEEec
Confidence 999999998
No 13
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.85 E-value=7.3e-21 Score=142.96 Aligned_cols=83 Identities=20% Similarity=0.485 Sum_probs=72.9
Q ss_pred EeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEE-eCCE
Q 026695 136 EQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAEL-KNGV 214 (235)
Q Consensus 136 e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~-~nGV 214 (235)
+.++.|.|.++||||+++||+|+++++.|+|+|++..........+. +.+|.|.|+|.||++||.++|+|.| +|||
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGv 80 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSLSPSGH 80 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEeCCCce
Confidence 56889999999999999999999999999999998765443333332 4589999999999999999999999 9999
Q ss_pred EEEEEec
Q 026695 215 LNIVIPR 221 (235)
Q Consensus 215 L~I~lPK 221 (235)
|+|++|+
T Consensus 81 L~I~~P~ 87 (87)
T cd06481 81 LHIRAPR 87 (87)
T ss_pred EEEEcCC
Confidence 9999996
No 14
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.85 E-value=1.3e-20 Score=140.47 Aligned_cols=81 Identities=25% Similarity=0.420 Sum_probs=70.2
Q ss_pred eEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEe-C
Q 026695 134 VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELK-N 212 (235)
Q Consensus 134 I~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~-n 212 (235)
+..+++.|.|.++||||+++||+|++.++.|+|+|++....+ ..+++ ++.|.|+|.||.+||+++|+|.|. |
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~--~~~~~-----~~eF~R~~~LP~~vd~~~v~A~~~~d 74 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMD--RHGFV-----SREFTRTYILPMDVDPLLVRASLSHD 74 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceec--CCCEE-----EEEEEEEEECCCCCChhhEEEEecCC
Confidence 456789999999999999999999999999999999864332 23343 345999999999999999999995 9
Q ss_pred CEEEEEEec
Q 026695 213 GVLNIVIPR 221 (235)
Q Consensus 213 GVL~I~lPK 221 (235)
|||+|++||
T Consensus 75 GvL~I~~Pr 83 (83)
T cd06476 75 GILCIQAPR 83 (83)
T ss_pred CEEEEEecC
Confidence 999999997
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.84 E-value=3.7e-20 Score=136.22 Aligned_cols=88 Identities=49% Similarity=0.823 Sum_probs=81.1
Q ss_pred ceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeC
Q 026695 133 WVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKN 212 (235)
Q Consensus 133 dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~n 212 (235)
++.|++++|.|.++|||+++++|+|++.++.|.|+|++........ .....++.++.|.|+|.||.++|++.++|.|+|
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~-~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~ 79 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEE-NYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN 79 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCC-cEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC
Confidence 4789999999999999999999999999999999999997664433 577788999999999999999999999999999
Q ss_pred CEEEEEEec
Q 026695 213 GVLNIVIPR 221 (235)
Q Consensus 213 GVL~I~lPK 221 (235)
|+|+|++||
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999997
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.83 E-value=3e-20 Score=139.75 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=71.0
Q ss_pred eCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeCC-EE
Q 026695 137 QDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKNG-VL 215 (235)
Q Consensus 137 ~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~nG-VL 215 (235)
+++.|+|.++||||+++||+|++.++.|+|+|+++...++.. ..||.+|+|.|+|.||.+||.++|+|+|+|| +|
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l 81 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVV 81 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEE
Confidence 578999999999999999999999999999999976543222 2378999999999999999999999999766 99
Q ss_pred EEEEe
Q 026695 216 NIVIP 220 (235)
Q Consensus 216 ~I~lP 220 (235)
+|.-|
T Consensus 82 ~i~~~ 86 (87)
T cd06482 82 KIETP 86 (87)
T ss_pred EEeeC
Confidence 99887
No 17
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.81 E-value=8.4e-20 Score=135.45 Aligned_cols=78 Identities=26% Similarity=0.578 Sum_probs=69.3
Q ss_pred eCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeC-CEE
Q 026695 137 QDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKN-GVL 215 (235)
Q Consensus 137 ~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~n-GVL 215 (235)
.++.|.|.++||||+++||+|+++++.|+|+|+++.... .. ++.++.|.|+|.||.+||+++|+|+|.| |+|
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~--~~-----~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL 77 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEERED--EH-----GYVSREFTRRYQLPEGVDPDSVTSSLSSDGVL 77 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeecc--CC-----CEEEEEEEEEEECCCCCChHHeEEEeCCCcEE
Confidence 346999999999999999999999999999999876543 11 2456889999999999999999999998 999
Q ss_pred EEEEec
Q 026695 216 NIVIPR 221 (235)
Q Consensus 216 ~I~lPK 221 (235)
+|++||
T Consensus 78 ~I~~Pk 83 (83)
T cd06526 78 TIEAPK 83 (83)
T ss_pred EEEecC
Confidence 999997
No 18
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.81 E-value=1.7e-19 Score=134.55 Aligned_cols=79 Identities=23% Similarity=0.410 Sum_probs=69.0
Q ss_pred EEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEE-eCC
Q 026695 135 KEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAEL-KNG 213 (235)
Q Consensus 135 ~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~-~nG 213 (235)
.|+++.|.|+++||||+|+||+|++.++.|+|+|++..+.+ +.++. .++|.|+|.||.+|+.++|+|+| +||
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~--~~~~~-----~r~F~R~~~LP~~Vd~~~v~A~~~~dG 75 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMD--EHGFI-----SRSFTRQYQLPDGVEHKDLSAMLCHDG 75 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccC--CCCEE-----EEEEEEEEECCCCcchheEEEEEcCCC
Confidence 46899999999999999999999999999999999877542 23332 33799999999999999999998 899
Q ss_pred EEEEEEe
Q 026695 214 VLNIVIP 220 (235)
Q Consensus 214 VL~I~lP 220 (235)
||+|+.|
T Consensus 76 vL~I~~~ 82 (83)
T cd06477 76 ILVVETK 82 (83)
T ss_pred EEEEEec
Confidence 9999976
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.4e-18 Score=145.06 Aligned_cols=110 Identities=40% Similarity=0.665 Sum_probs=97.9
Q ss_pred CCCCcccceEEeCcEEEEEEEeCCCCCCcEEEEEECC-EEEEEEEeeccccc--CCCCeEEEEEEeeEEEEEEECCCCcc
Q 026695 126 TPSQLMGWVKEQDDCYKLRYDVPGLGKDDVKITIHDG-VLTIKGEHKEEEEE--SSDDEHWSARSYGYYNTSLALPDDAK 202 (235)
Q Consensus 126 ~~~~p~~dI~e~~d~y~I~~dLPGv~kedI~V~v~~~-~L~I~g~~~~~~~~--~~~~~~~~er~~g~F~R~i~LP~~Vd 202 (235)
..+.++.+|.+.++.|++.++|||+.+++|+|.++++ .|+|+|+++.+.++ ....+++.|+.+|.|.+.+.||++++
T Consensus 81 ~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~ 160 (196)
T KOG0710|consen 81 SEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVD 160 (196)
T ss_pred ccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCcccc
Confidence 3444555699999999999999999999999999987 79999999987654 45678899999999999999999999
Q ss_pred cCceEEEEeCCEEEEEEeccCC--CCCCceEEecC
Q 026695 203 ADEIKAELKNGVLNIVIPRTEK--PKQDVKEVRIH 235 (235)
Q Consensus 203 ~~~I~A~~~nGVL~I~lPK~~~--~~~~~~~I~Ie 235 (235)
.+.|+|.|+||||+|++||..+ +...++.|.|.
T Consensus 161 ~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 161 VDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred HHHHHHHhhCCeEEEEEecccccccCCccceeecc
Confidence 9999999999999999999988 57778888874
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.72 E-value=4.8e-17 Score=123.29 Aligned_cols=81 Identities=20% Similarity=0.420 Sum_probs=71.4
Q ss_pred eEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEe-C
Q 026695 134 VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELK-N 212 (235)
Q Consensus 134 I~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~-n 212 (235)
+.++++.|.|.+++.||++|||+|++.++.|+|+|+++.+..+ .+++ .++|.|+|.||++||++.|+|.|. |
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e--~g~~-----~r~F~R~~~LP~~Vd~~~v~s~l~~d 82 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKE--GGIV-----SKNFTKKIQLPPEVDPVTVFASLSPE 82 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCC--CCEE-----EEEEEEEEECCCCCCchhEEEEeCCC
Confidence 5668999999999999999999999999999999999876532 2333 366999999999999999999996 9
Q ss_pred CEEEEEEec
Q 026695 213 GVLNIVIPR 221 (235)
Q Consensus 213 GVL~I~lPK 221 (235)
|+|+|++|.
T Consensus 83 GvL~IeaP~ 91 (91)
T cd06480 83 GLLIIEAPQ 91 (91)
T ss_pred CeEEEEcCC
Confidence 999999983
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4.2e-16 Score=130.98 Aligned_cols=98 Identities=20% Similarity=0.447 Sum_probs=85.3
Q ss_pred ccceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEE
Q 026695 131 MGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAEL 210 (235)
Q Consensus 131 ~~dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~ 210 (235)
..++..+++.|.|.+|+..|.+++|.|++.|+.|.|.|+|.+..+ +.++..++ |.|+|.||++||++.|++.+
T Consensus 64 ~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d--~~G~v~R~-----F~R~y~LP~~vdp~~V~S~L 136 (173)
T KOG3591|consen 64 ASEIVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKED--EHGYVSRS-----FVRKYLLPEDVDPTSVTSTL 136 (173)
T ss_pred ccccccCCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccC--CCCeEEEE-----EEEEecCCCCCChhheEEee
Confidence 456889999999999999999999999999999999999988763 34454443 99999999999999999999
Q ss_pred -eCCEEEEEEeccCCCCCCceEEecC
Q 026695 211 -KNGVLNIVIPRTEKPKQDVKEVRIH 235 (235)
Q Consensus 211 -~nGVL~I~lPK~~~~~~~~~~I~Ie 235 (235)
.||+|+|+.||.+......+.|+|+
T Consensus 137 S~dGvLtI~ap~~~~~~~~er~ipI~ 162 (173)
T KOG3591|consen 137 SSDGVLTIEAPKPPPKQDNERSIPIE 162 (173)
T ss_pred CCCceEEEEccCCCCcCccceEEeEe
Confidence 8999999999998765456777764
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.55 E-value=7.2e-14 Score=98.81 Aligned_cols=79 Identities=44% Similarity=0.797 Sum_probs=71.4
Q ss_pred EEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeCCE
Q 026695 135 KEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKNGV 214 (235)
Q Consensus 135 ~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~nGV 214 (235)
.++++.|.|++++||+.+++|+|.+.++.|.|+|++..... .+...+.|.+.+.||..++++.++|.|.+|+
T Consensus 2 ~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~--------~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~ 73 (80)
T cd00298 2 YQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEE--------RERSYGEFERSFELPEDVDPEKSKASLENGV 73 (80)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCc--------ceEeeeeEEEEEECCCCcCHHHCEEEEECCE
Confidence 57889999999999999999999999999999999875542 3445677999999999999999999999999
Q ss_pred EEEEEec
Q 026695 215 LNIVIPR 221 (235)
Q Consensus 215 L~I~lPK 221 (235)
|+|++||
T Consensus 74 l~i~l~K 80 (80)
T cd00298 74 LEITLPK 80 (80)
T ss_pred EEEEEcC
Confidence 9999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.29 E-value=2.8e-11 Score=87.76 Aligned_cols=70 Identities=23% Similarity=0.294 Sum_probs=64.6
Q ss_pred EEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeCCE
Q 026695 135 KEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKNGV 214 (235)
Q Consensus 135 ~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~nGV 214 (235)
.++++.+.|++++||+.+++++|+++++.|.|++. .|.+.+.||..||+++.+|++.+|.
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~~--------------------~~~~~~~l~~~I~~e~~~~~~~~~~ 61 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNFP--------------------PYLFELDLAAPIDDEKSSAKIGNGV 61 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEEEecCEEEEcCC--------------------CEEEEEeCcccccccccEEEEeCCE
Confidence 47899999999999999999999999999999870 2788999999999999999999999
Q ss_pred EEEEEeccCC
Q 026695 215 LNIVIPRTEK 224 (235)
Q Consensus 215 L~I~lPK~~~ 224 (235)
|.|+|||.++
T Consensus 62 l~i~L~K~~~ 71 (78)
T cd06469 62 LVFTLVKKEP 71 (78)
T ss_pred EEEEEEeCCC
Confidence 9999999875
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.00 E-value=4.7e-09 Score=75.67 Aligned_cols=75 Identities=17% Similarity=0.149 Sum_probs=66.5
Q ss_pred EEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeCCE
Q 026695 135 KEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKNGV 214 (235)
Q Consensus 135 ~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~nGV 214 (235)
.++++.+.|.+.+||..+++++|.++++.|.|++.... .+.|...+.|+..|+++..++++.+|.
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~---------------~~~~~~~~~L~~~I~~~~s~~~~~~~~ 66 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGG---------------GKEYLLEGELFGPIDPEESKWTVEDRK 66 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCC---------------CCceEEeeEccCccchhhcEEEEeCCE
Confidence 46889999999999999999999999999999987531 123778889999999999999999999
Q ss_pred EEEEEeccCC
Q 026695 215 LNIVIPRTEK 224 (235)
Q Consensus 215 L~I~lPK~~~ 224 (235)
|.|+|+|..+
T Consensus 67 l~i~L~K~~~ 76 (84)
T cd06463 67 IEITLKKKEP 76 (84)
T ss_pred EEEEEEECCC
Confidence 9999999876
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.95 E-value=5e-09 Score=88.02 Aligned_cols=78 Identities=33% Similarity=0.495 Sum_probs=61.8
Q ss_pred CcccceEEeCc-EEEEEEEeCCCCCCc-EEEEEECC--EEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccC
Q 026695 129 QLMGWVKEQDD-CYKLRYDVPGLGKDD-VKITIHDG--VLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKAD 204 (235)
Q Consensus 129 ~p~~dI~e~~d-~y~I~~dLPGv~ked-I~V~v~~~--~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~ 204 (235)
.+.+++.+.++ +++|.++|||+++++ |+|.++.+ .|+|+.. +.|.+++.||.. +++
T Consensus 91 ~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~-------------------~~~~krv~L~~~-~~e 150 (177)
T PF05455_consen 91 SIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG-------------------EKYLKRVALPWP-DPE 150 (177)
T ss_pred eeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC-------------------CceEeeEecCCC-ccc
Confidence 45677888777 699999999999888 99999954 5555421 115678999976 689
Q ss_pred ceEEEEeCCEEEEEEeccCCCC
Q 026695 205 EIKAELKNGVLNIVIPRTEKPK 226 (235)
Q Consensus 205 ~I~A~~~nGVL~I~lPK~~~~~ 226 (235)
.++|.|.||||+|+|-+.+...
T Consensus 151 ~~~~t~nNgILEIri~~~~~~~ 172 (177)
T PF05455_consen 151 ITSATFNNGILEIRIRRTEESS 172 (177)
T ss_pred eeeEEEeCceEEEEEeecCCCC
Confidence 9999999999999998876543
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.78 E-value=4e-08 Score=71.87 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=67.3
Q ss_pred ceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeC
Q 026695 133 WVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKN 212 (235)
Q Consensus 133 dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~n 212 (235)
|.+++++.+.|.+.+||+.++++.|.++++.|.|++.... ...|...+.|+..|+++..++.+.+
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~---------------~~~~~~~~~L~~~I~~~~s~~~~~~ 65 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPG---------------GSEYQLELDLFGPIDPEQSKVSVLP 65 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCC---------------CCeEEEecccccccCchhcEEEEeC
Confidence 4678999999999999999999999999999999877430 1127778899999999999999999
Q ss_pred CEEEEEEeccCC
Q 026695 213 GVLNIVIPRTEK 224 (235)
Q Consensus 213 GVL~I~lPK~~~ 224 (235)
|.|.|+|.|..+
T Consensus 66 ~~vei~L~K~~~ 77 (84)
T cd06466 66 TKVEITLKKAEP 77 (84)
T ss_pred eEEEEEEEcCCC
Confidence 999999999875
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.34 E-value=1.6e-05 Score=56.60 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=62.6
Q ss_pred ccceEEeCcEEEEEEEeCCC--CCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEE
Q 026695 131 MGWVKEQDDCYKLRYDVPGL--GKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKA 208 (235)
Q Consensus 131 ~~dI~e~~d~y~I~~dLPGv--~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A 208 (235)
..+..++++.+.|.+.+++. ++++++|.++++.|.|+....... .|.-.+.|...|+++..+.
T Consensus 2 ~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~---------------~~~~~~~L~~~I~~~~s~~ 66 (79)
T PF04969_consen 2 RYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGK---------------EYLLEGELFGEIDPDESTW 66 (79)
T ss_dssp SEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSC---------------EEEEEEEBSS-BECCCEEE
T ss_pred CeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCc---------------eEEEEEEEeeeEcchhcEE
Confidence 34589999999999999665 599999999999999996643321 1667778999999999999
Q ss_pred EEeCCEEEEEEec
Q 026695 209 ELKNGVLNIVIPR 221 (235)
Q Consensus 209 ~~~nGVL~I~lPK 221 (235)
.+.++.|.|+|.|
T Consensus 67 ~~~~~~i~i~L~K 79 (79)
T PF04969_consen 67 KVKDNKIEITLKK 79 (79)
T ss_dssp EEETTEEEEEEEB
T ss_pred EEECCEEEEEEEC
Confidence 9999999999987
No 28
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.08 E-value=1.7e-05 Score=71.95 Aligned_cols=66 Identities=21% Similarity=0.465 Sum_probs=59.1
Q ss_pred eCcEEEEEEEeCCC-CCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEE--eCC
Q 026695 137 QDDCYKLRYDVPGL-GKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAEL--KNG 213 (235)
Q Consensus 137 ~~d~y~I~~dLPGv-~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~--~nG 213 (235)
..+.++|+++|||+ +..+|+|.|.+..|.|..... .|.-.+.||..||.+..+|+| +.+
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~------------------~y~L~l~LP~~V~~~~~~Akf~~~~~ 320 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP------------------KYRLDLPLPYPVDEDNGKAKFDKKTK 320 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC------------------ceEEEccCCCcccCCCceEEEccCCC
Confidence 36899999999999 999999999999999995532 277889999999999999999 578
Q ss_pred EEEEEEe
Q 026695 214 VLNIVIP 220 (235)
Q Consensus 214 VL~I~lP 220 (235)
+|+|+||
T Consensus 321 ~L~vtlp 327 (328)
T PF08190_consen 321 TLTVTLP 327 (328)
T ss_pred EEEEEEE
Confidence 9999998
No 29
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.08 E-value=5e-05 Score=58.63 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=65.3
Q ss_pred ccceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEE
Q 026695 131 MGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAEL 210 (235)
Q Consensus 131 ~~dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~ 210 (235)
+.+.+++.+.+.|.+.+||+ +++.|.+..+.|.|++...... ..|.-.+.|...|+++..+..+
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~--------------~~y~~~~~L~~~I~pe~s~~~v 65 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGG--------------KKYEFDLEFYKEIDPEESKYKV 65 (108)
T ss_pred ceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCC--------------eeEEEEeEhhhhccccccEEEe
Confidence 44589999999999999998 8899999999999998542111 1166777899999999999999
Q ss_pred eCCEEEEEEeccC
Q 026695 211 KNGVLNIVIPRTE 223 (235)
Q Consensus 211 ~nGVL~I~lPK~~ 223 (235)
.++.|.|+|.|..
T Consensus 66 ~~~kveI~L~K~~ 78 (108)
T cd06465 66 TGRQIEFVLRKKE 78 (108)
T ss_pred cCCeEEEEEEECC
Confidence 9999999999987
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.01 E-value=6.6e-05 Score=55.24 Aligned_cols=77 Identities=12% Similarity=0.125 Sum_probs=64.9
Q ss_pred ceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeC
Q 026695 133 WVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKN 212 (235)
Q Consensus 133 dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~n 212 (235)
|.+++++...|.+.++|+.++++.|++.++.|.+++...... .|.-.+.|...|++++.+.....
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~---------------~y~~~~~L~~~I~p~~s~~~v~~ 65 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGN---------------DYSLKLHLLHPIVPEQSSYKILS 65 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCC---------------cEEEeeecCceecchhcEEEEeC
Confidence 467889999999999999999999999999999998652110 15667789999999988888889
Q ss_pred CEEEEEEeccCC
Q 026695 213 GVLNIVIPRTEK 224 (235)
Q Consensus 213 GVL~I~lPK~~~ 224 (235)
+-+.|.|.|.+.
T Consensus 66 ~kiei~L~K~~~ 77 (84)
T cd06489 66 TKIEIKLKKTEA 77 (84)
T ss_pred cEEEEEEEcCCC
Confidence 999999999764
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.74 E-value=0.00033 Score=51.19 Aligned_cols=73 Identities=22% Similarity=0.230 Sum_probs=60.6
Q ss_pred eEEeCcEEEEEEEeC-CCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeC
Q 026695 134 VKEQDDCYKLRYDVP-GLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKN 212 (235)
Q Consensus 134 I~e~~d~y~I~~dLP-Gv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~n 212 (235)
..++++...|.+.+| ++.++||+|.+.++.|.|+... .. +.-...|...|+++...-.+.+
T Consensus 3 W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~--~~----------------~~l~~~L~~~I~~~~s~w~~~~ 64 (85)
T cd06467 3 WTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG--GE----------------PLLDGELYAKVKVDESTWTLED 64 (85)
T ss_pred EEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC--CC----------------ceEcCcccCceeEcCCEEEEeC
Confidence 678999999999997 7899999999999999998642 00 1122358889999998889999
Q ss_pred -CEEEEEEeccCC
Q 026695 213 -GVLNIVIPRTEK 224 (235)
Q Consensus 213 -GVL~I~lPK~~~ 224 (235)
..|.|+|+|.++
T Consensus 65 ~~~v~i~L~K~~~ 77 (85)
T cd06467 65 GKLLEITLEKRNE 77 (85)
T ss_pred CCEEEEEEEECCC
Confidence 999999999876
No 32
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.65 E-value=0.0008 Score=50.08 Aligned_cols=79 Identities=9% Similarity=0.023 Sum_probs=66.7
Q ss_pred cceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEe
Q 026695 132 GWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELK 211 (235)
Q Consensus 132 ~dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~ 211 (235)
.|.+++++...|.+.+.|+.++++.+.++.+.|.|+...... ..|.-.+.|-..|+++..+-...
T Consensus 3 ~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~---------------~~y~~~l~L~~~I~~~~s~~~v~ 67 (87)
T cd06488 3 HDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGN---------------KEFQLDIELWGVIDVEKSSVNML 67 (87)
T ss_pred ccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCC---------------ceEEEEeeccceEChhHcEEEec
Confidence 468999999999999999999999999999999887654320 01677788999999999888889
Q ss_pred CCEEEEEEeccCCC
Q 026695 212 NGVLNIVIPRTEKP 225 (235)
Q Consensus 212 nGVL~I~lPK~~~~ 225 (235)
.+-+.|+|.|.++.
T Consensus 68 ~~kvei~L~K~~~~ 81 (87)
T cd06488 68 PTKVEIKLRKAEPG 81 (87)
T ss_pred CcEEEEEEEeCCCC
Confidence 99999999998753
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.65 E-value=0.00071 Score=50.35 Aligned_cols=77 Identities=10% Similarity=0.258 Sum_probs=63.0
Q ss_pred ceEEeCcEEEEEEEeCCCCC---CcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEE-CCCCcccCceEE
Q 026695 133 WVKEQDDCYKLRYDVPGLGK---DDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLA-LPDDAKADEIKA 208 (235)
Q Consensus 133 dI~e~~d~y~I~~dLPGv~k---edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~-LP~~Vd~~~I~A 208 (235)
+.+++++...|.+.+|+..+ ++++|+++.+.|.|++..... . .|.-.+. |-..|+++..+.
T Consensus 5 ~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~-----~----------~~~~~~~~L~~~I~~e~s~~ 69 (92)
T cd06468 5 AWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNG-----K----------NYRFTINRLLKKIDPEKSSF 69 (92)
T ss_pred eeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCC-----c----------EEEEEehHhhCccCccccEE
Confidence 37889999999999999976 999999999999999743111 1 1444453 888999999999
Q ss_pred EEeCCEEEEEEeccCC
Q 026695 209 ELKNGVLNIVIPRTEK 224 (235)
Q Consensus 209 ~~~nGVL~I~lPK~~~ 224 (235)
.+..+-+.|+|.|.++
T Consensus 70 ~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 70 KVKTDRIVITLAKKKE 85 (92)
T ss_pred EEeCCEEEEEEEeCCC
Confidence 9999999999999875
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.56 E-value=0.0011 Score=49.11 Aligned_cols=74 Identities=12% Similarity=0.213 Sum_probs=59.3
Q ss_pred eEEeCcEEEEEEEeC-CCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeC
Q 026695 134 VKEQDDCYKLRYDVP-GLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKN 212 (235)
Q Consensus 134 I~e~~d~y~I~~dLP-Gv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~n 212 (235)
..++.+...|.+.+| |+.++|++|+++.+.|.|... ... . + -.-.|...|+++.-+-.+++
T Consensus 3 W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~--~~~------~---------~-~~g~L~~~I~~d~Stw~i~~ 64 (85)
T cd06493 3 WQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK--DQA------P---------L-LEGKLYSSIDHESSTWIIKE 64 (85)
T ss_pred cEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC--CCC------e---------E-EeCcccCcccccCcEEEEeC
Confidence 678999999999996 999999999999999999742 000 0 1 23368889999988888877
Q ss_pred C-EEEEEEeccCCC
Q 026695 213 G-VLNIVIPRTEKP 225 (235)
Q Consensus 213 G-VL~I~lPK~~~~ 225 (235)
| .|.|+|.|.++.
T Consensus 65 ~~~l~i~L~K~~~~ 78 (85)
T cd06493 65 NKSLEVSLIKKDEG 78 (85)
T ss_pred CCEEEEEEEECCCC
Confidence 7 799999998753
No 35
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.99 E-value=0.013 Score=45.56 Aligned_cols=78 Identities=13% Similarity=0.159 Sum_probs=60.5
Q ss_pred cccceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEE
Q 026695 130 LMGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAE 209 (235)
Q Consensus 130 p~~dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~ 209 (235)
|.++..+..+.+.|++.+|+ .+|++|+++++.|.++|... . +. .|.-.+.|=..|++++.+..
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~--~---g~----------~y~~~l~l~~~I~pe~Sk~~ 64 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNG--D---NV----------KIYNEIELYDRVDPNDSKHK 64 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECC--C---Cc----------EEEEEEEeecccCcccCeEE
Confidence 45568999999999999999 58999999999999998431 1 11 14456677788999977777
Q ss_pred EeCCEEEEEEeccCC
Q 026695 210 LKNGVLNIVIPRTEK 224 (235)
Q Consensus 210 ~~nGVL~I~lPK~~~ 224 (235)
...--+.|.|.|++.
T Consensus 65 v~~r~ve~~L~K~~~ 79 (106)
T cd00237 65 RTDRSILCCLRKGKE 79 (106)
T ss_pred eCCceEEEEEEeCCC
Confidence 666678889998864
No 36
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.90 E-value=0.014 Score=44.31 Aligned_cols=73 Identities=22% Similarity=0.270 Sum_probs=58.9
Q ss_pred ceEEeCcEEEEEEEeC-CCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEe
Q 026695 133 WVKEQDDCYKLRYDVP-GLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELK 211 (235)
Q Consensus 133 dI~e~~d~y~I~~dLP-Gv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~ 211 (235)
+..++.+...|++.+| |+.++||.|.+..+.|.|.-+-. +.-.| .|+..|+++.-.-.++
T Consensus 9 ~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~-------------~~l~G------~L~~~I~~destWtle 69 (93)
T cd06494 9 CWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQ-------------EVLKG------KLFDSVVADECTWTLE 69 (93)
T ss_pred EEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCE-------------EEEcC------cccCccCcccCEEEEE
Confidence 4889999999999987 89999999999999999984210 01012 4788999999899998
Q ss_pred CCE-EEEEEeccCC
Q 026695 212 NGV-LNIVIPRTEK 224 (235)
Q Consensus 212 nGV-L~I~lPK~~~ 224 (235)
+|- |.|+|.|...
T Consensus 70 d~k~l~I~L~K~~~ 83 (93)
T cd06494 70 DRKLIRIVLTKSNR 83 (93)
T ss_pred CCcEEEEEEEeCCC
Confidence 875 8999999764
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.51 E-value=0.019 Score=53.31 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=66.5
Q ss_pred cccceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEE
Q 026695 130 LMGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAE 209 (235)
Q Consensus 130 p~~dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~ 209 (235)
++.|.+++++.+.|.|.+.|+.++++.|.+.++.|.|+....... .|...+.|-..|+++..+..
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~---------------~y~~~~~L~~~I~p~~s~~~ 221 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGED---------------AYHLQPRLFGKIIPDKCKYE 221 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCc---------------ceeecccccccccccccEEE
Confidence 456799999999999999999999999999999999986542111 15556788889999988888
Q ss_pred EeCCEEEEEEeccCC
Q 026695 210 LKNGVLNIVIPRTEK 224 (235)
Q Consensus 210 ~~nGVL~I~lPK~~~ 224 (235)
+.-.-+.|+|.|.++
T Consensus 222 v~~~Kiei~l~K~~~ 236 (356)
T PLN03088 222 VLSTKIEIRLAKAEP 236 (356)
T ss_pred EecceEEEEEecCCC
Confidence 887799999988764
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.40 E-value=0.012 Score=49.82 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=63.1
Q ss_pred cccceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEE
Q 026695 130 LMGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAE 209 (235)
Q Consensus 130 p~~dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~ 209 (235)
++.|.++++...+|.+-.+++.++|++|.+.++.|.|..+...... |.-...|-..|.+++.+-+
T Consensus 4 ~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~---------------~~l~~~L~~~I~pe~~s~k 68 (196)
T KOG1309|consen 4 IRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSE---------------YNLQLKLYHEIIPEKSSFK 68 (196)
T ss_pred ccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchh---------------hhhhHHhcccccccceeeE
Confidence 4567999999999999999999999999999999999877653221 4444557777888877777
Q ss_pred EeCCEEEEEEeccC
Q 026695 210 LKNGVLNIVIPRTE 223 (235)
Q Consensus 210 ~~nGVL~I~lPK~~ 223 (235)
.----++|+|+|.+
T Consensus 69 ~~stKVEI~L~K~~ 82 (196)
T KOG1309|consen 69 VFSTKVEITLAKAE 82 (196)
T ss_pred eeeeeEEEEecccc
Confidence 77777888888854
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.25 E-value=0.093 Score=39.02 Aligned_cols=76 Identities=13% Similarity=0.099 Sum_probs=57.0
Q ss_pred ceEEeCcEEEEEEEeCC--CCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEE
Q 026695 133 WVKEQDDCYKLRYDVPG--LGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAEL 210 (235)
Q Consensus 133 dI~e~~d~y~I~~dLPG--v~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~ 210 (235)
|.+++++...|.+..++ ..++++.+....+.|.|+-... .. .|...+.|=..|+++. +.++
T Consensus 2 DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~--~~--------------~~~~~~~L~~~I~~~~-~~~~ 64 (87)
T cd06490 2 DWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG--DK--------------SYLLHLDLSNEVQWPC-EVRI 64 (87)
T ss_pred CceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC--Cc--------------eEEEeeeccccCCCCc-EEEE
Confidence 58899999999999985 5556666666777898875533 10 1667778888898775 5555
Q ss_pred e--CCEEEEEEeccCCC
Q 026695 211 K--NGVLNIVIPRTEKP 225 (235)
Q Consensus 211 ~--nGVL~I~lPK~~~~ 225 (235)
. -|-++|+|.|.++.
T Consensus 65 ~~~~~KVEI~L~K~e~~ 81 (87)
T cd06490 65 STETGKIELVLKKKEPE 81 (87)
T ss_pred cccCceEEEEEEcCCCC
Confidence 4 78999999998754
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=95.92 E-value=0.1 Score=38.91 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=56.0
Q ss_pred eEEeCcEEEEEEEeC-C--CCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEE
Q 026695 134 VKEQDDCYKLRYDVP-G--LGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAEL 210 (235)
Q Consensus 134 I~e~~d~y~I~~dLP-G--v~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~ 210 (235)
..++.++..|++.+| + +++.||+|.+..+.|.|.-+..... + .=.|...|+++.-.-.+
T Consensus 3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~~----------------i--~G~L~~~V~~des~Wtl 64 (87)
T cd06492 3 WTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPI----------------I--DGELYNEVKVEESSWLI 64 (87)
T ss_pred cEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCceE----------------E--eCcccCcccccccEEEE
Confidence 457888999999996 3 8999999999999999864311100 1 11478889999888889
Q ss_pred eCC-EEEEEEeccCC
Q 026695 211 KNG-VLNIVIPRTEK 224 (235)
Q Consensus 211 ~nG-VL~I~lPK~~~ 224 (235)
++| .|.|+|-|...
T Consensus 65 ed~~~l~i~L~K~~~ 79 (87)
T cd06492 65 EDGKVVTVNLEKINK 79 (87)
T ss_pred eCCCEEEEEEEECCC
Confidence 886 89999999754
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=93.76 E-value=0.79 Score=35.34 Aligned_cols=76 Identities=11% Similarity=0.188 Sum_probs=57.3
Q ss_pred eEEeCcEEEEEEEeC-CC-CCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEe
Q 026695 134 VKEQDDCYKLRYDVP-GL-GKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELK 211 (235)
Q Consensus 134 I~e~~d~y~I~~dLP-Gv-~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~ 211 (235)
..++.++..|++.|| |. +..||.|.+..+.|.|.-+....+ ..+ -.| .|+..|+++.-.-.++
T Consensus 9 WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~-----~~~----i~G------~L~~~V~~des~Wtle 73 (102)
T cd06495 9 WSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGE-----KVL----MEG------EFTHKINTENSLWSLE 73 (102)
T ss_pred EEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCC-----ceE----EeC------cccCcccCccceEEEe
Confidence 678999999999999 54 578999999999999886421000 000 011 3888999999899999
Q ss_pred CC-EEEEEEeccCC
Q 026695 212 NG-VLNIVIPRTEK 224 (235)
Q Consensus 212 nG-VL~I~lPK~~~ 224 (235)
+| .|.|+|-|...
T Consensus 74 d~~~l~I~L~K~~~ 87 (102)
T cd06495 74 PGKCVLLSLSKCSE 87 (102)
T ss_pred CCCEEEEEEEECCC
Confidence 86 58999999753
No 42
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=85.66 E-value=3.1 Score=35.28 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=57.4
Q ss_pred ccceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEE
Q 026695 131 MGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAEL 210 (235)
Q Consensus 131 ~~dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~ 210 (235)
.+-..+..+.+.+++.|+ +..+.+|.++...|+++|+-.... ..|...|.|=..||+++.+-+-
T Consensus 9 ~v~Waqr~~~vyltv~Ve--d~~d~~v~~e~~~l~fs~k~~~d~--------------~~~~~~ief~~eIdpe~sk~k~ 72 (180)
T KOG3158|consen 9 EVKWAQRRDLVYLTVCVE--DAKDVHVNLEPSKLTFSCKSGADN--------------HKYENEIEFFDEIDPEKSKHKR 72 (180)
T ss_pred cchhhhhcCeEEEEEEec--cCccceeeccccEEEEEeccCCCc--------------eeeEEeeehhhhcCHhhccccc
Confidence 334778888999999997 566788888888999999865222 1156678888889999888777
Q ss_pred eCCEEEEEEeccCC
Q 026695 211 KNGVLNIVIPRTEK 224 (235)
Q Consensus 211 ~nGVL~I~lPK~~~ 224 (235)
. +-++..++++..
T Consensus 73 ~-~r~if~i~~K~e 85 (180)
T KOG3158|consen 73 T-SRSIFCILRKKE 85 (180)
T ss_pred c-ceEEEEEEEccc
Confidence 6 777777766554
No 43
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=81.90 E-value=11 Score=30.03 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=50.2
Q ss_pred ceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeC
Q 026695 133 WVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKN 212 (235)
Q Consensus 133 dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~n 212 (235)
.|.. .+...+++.. ..+.++++.+++.|.|+.+.....-. ..+..... ...-.-.+.||.++..++++....+
T Consensus 69 ~I~~-~~~~~i~v~~---~~k~~~~~~~~~~L~I~~~~~~~~~~--~~~~~~~~-~~~~~i~I~lP~~~~l~~i~i~~~~ 141 (166)
T PF13349_consen 69 EIKP-SDDDKIKVEY---NGKKPEISVEGGTLTIKSKDRESFFF--KGFNFNNS-DNKSKITIYLPKDYKLDKIDIKTSS 141 (166)
T ss_pred EEEE-cCCccEEEEE---cCcEEEEEEcCCEEEEEEeccccccc--ceEEEccc-CCCcEEEEEECCCCceeEEEEEecc
Confidence 3544 3335556655 22268999999999999772221100 11111111 2345678999999988999999999
Q ss_pred CEEEEE
Q 026695 213 GVLNIV 218 (235)
Q Consensus 213 GVL~I~ 218 (235)
|-++|.
T Consensus 142 G~i~i~ 147 (166)
T PF13349_consen 142 GDITIE 147 (166)
T ss_pred ccEEEE
Confidence 988875
No 44
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=79.90 E-value=4 Score=30.45 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=29.5
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEeccCC
Q 026695 190 YYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEK 224 (235)
Q Consensus 190 ~F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lPK~~~ 224 (235)
.|.-.+.|| +++++.|+.++.+|.|+|+.-+...
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 377788899 8999999999999999999977543
No 45
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=75.97 E-value=6.2 Score=29.16 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=30.3
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEeccCCC
Q 026695 190 YYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKP 225 (235)
Q Consensus 190 ~F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lPK~~~~ 225 (235)
.|.-.+.|| ++..+.|+..++++.|+|+..+....
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 488899999 69999999999999999998765543
No 46
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=74.22 E-value=17 Score=32.80 Aligned_cols=82 Identities=9% Similarity=0.041 Sum_probs=68.7
Q ss_pred ccceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEE
Q 026695 131 MGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAEL 210 (235)
Q Consensus 131 ~~dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~ 210 (235)
+-|+..++..++|.+...|.-++.-.|...+-.|.|.-...... .+|...+.|=.-|+++...+.+
T Consensus 216 R~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gn--------------a~fd~d~kLwgvvnve~s~v~m 281 (320)
T KOG1667|consen 216 RHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGN--------------ASFDLDYKLWGVVNVEESSVVM 281 (320)
T ss_pred hhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCC--------------ceeeccceeeeeechhhceEEe
Confidence 44788999999999999999999999999999998886654211 2388888888889999999999
Q ss_pred eCCEEEEEEeccCCCC
Q 026695 211 KNGVLNIVIPRTEKPK 226 (235)
Q Consensus 211 ~nGVL~I~lPK~~~~~ 226 (235)
-.--.+|+|+|.++..
T Consensus 282 ~~tkVEIsl~k~ep~s 297 (320)
T KOG1667|consen 282 GETKVEISLKKAEPGS 297 (320)
T ss_pred ecceEEEEEeccCCCC
Confidence 8899999999998754
No 47
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=73.87 E-value=8.7 Score=28.23 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=28.3
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEecc
Q 026695 190 YYNTSLALPDDAKADEIKAELKNGVLNIVIPRT 222 (235)
Q Consensus 190 ~F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lPK~ 222 (235)
.|.-.+.|| ++.++.|+.+++||.|+|+--+.
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 378889999 79999999999999999998654
No 48
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=72.80 E-value=8.1 Score=28.53 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=28.7
Q ss_pred EEEEEECCCCcccCceEEEEeCCEEEEEEeccC
Q 026695 191 YNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 223 (235)
Q Consensus 191 F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lPK~~ 223 (235)
|.-.+.|| +++++.|+..+++|.|+|+--+..
T Consensus 9 ~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 9 FQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred EEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 78888999 799999999999999999987654
No 49
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=72.79 E-value=8.8 Score=28.30 Aligned_cols=32 Identities=6% Similarity=0.175 Sum_probs=28.3
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEecc
Q 026695 190 YYNTSLALPDDAKADEIKAELKNGVLNIVIPRT 222 (235)
Q Consensus 190 ~F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lPK~ 222 (235)
.|.-.+.|| +++++.|+..+.+|+|+|+--+.
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 388889999 79999999999999999998654
No 50
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=71.05 E-value=10 Score=27.66 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=28.4
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEecc
Q 026695 190 YYNTSLALPDDAKADEIKAELKNGVLNIVIPRT 222 (235)
Q Consensus 190 ~F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lPK~ 222 (235)
.|.-.+.|| +++++.|+..+.++.|+|+.-+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 388889999 89999999999999999998654
No 51
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=71.01 E-value=2.4 Score=38.65 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=60.8
Q ss_pred ccceEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEE
Q 026695 131 MGWVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAEL 210 (235)
Q Consensus 131 ~~dI~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~ 210 (235)
..|..++.+...|-+.-|-+..++|.+-+++|.|.|+-+..... --|.-.+.|-..|+|+...-+.
T Consensus 178 ~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~--------------~~~~~~~~Ly~ev~P~~~s~k~ 243 (368)
T COG5091 178 AYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLR--------------LWNDITISLYKEVYPDIRSIKS 243 (368)
T ss_pred eeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccccc--------------hHHHhhhhhhhhcCcchhhhhh
Confidence 34577888899999999999999999999999999996643221 1155667787889998877776
Q ss_pred eCCEEEEEEeccC
Q 026695 211 KNGVLNIVIPRTE 223 (235)
Q Consensus 211 ~nGVL~I~lPK~~ 223 (235)
---+++|+|-|.+
T Consensus 244 fsK~~e~~l~KV~ 256 (368)
T COG5091 244 FSKRVEVHLRKVE 256 (368)
T ss_pred cchhheehhhhhh
Confidence 5578888887654
No 52
>PRK10743 heat shock protein IbpA; Provisional
Probab=69.84 E-value=11 Score=30.44 Aligned_cols=32 Identities=13% Similarity=0.294 Sum_probs=26.7
Q ss_pred EEEEEECCCCcccCceEEEEeCCEEEEEEeccC
Q 026695 191 YNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 223 (235)
Q Consensus 191 F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lPK~~ 223 (235)
|.-...|| +++.+.|+..+++|+|+|+.-+..
T Consensus 47 ~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 55556698 899999999999999999986554
No 53
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=69.79 E-value=11 Score=27.57 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=28.5
Q ss_pred EEEEEECCCCcccCceEEEEeCCEEEEEEeccC
Q 026695 191 YNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 223 (235)
Q Consensus 191 F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lPK~~ 223 (235)
|.-.+.|| +++++.|+.++++|.|+|+--|..
T Consensus 10 ~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 10 YQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 78889999 899999999999999999986643
No 54
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=66.86 E-value=12 Score=26.92 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=30.0
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEeccCC
Q 026695 190 YYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEK 224 (235)
Q Consensus 190 ~F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lPK~~~ 224 (235)
.|.-.+.|| ++.++.|+..++++.|+|+.-+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 488899999 6999999999999999999876553
No 55
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=65.61 E-value=36 Score=28.92 Aligned_cols=73 Identities=16% Similarity=0.292 Sum_probs=54.0
Q ss_pred eEEeCcEEEEEEEeC-CC-CCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEe
Q 026695 134 VKEQDDCYKLRYDVP-GL-GKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELK 211 (235)
Q Consensus 134 I~e~~d~y~I~~dLP-Gv-~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~ 211 (235)
...+=.++.|.+.+| |+ ...+|.+.+....|.|.-+.....-+ | .|...|+++...-.++
T Consensus 23 W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~ild------------G------~L~~~vk~des~WtiE 84 (179)
T KOG2265|consen 23 WDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPILD------------G------ELSHSVKVDESTWTIE 84 (179)
T ss_pred eeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCceec------------C------ccccccccccceEEec
Confidence 667777888888775 77 88899999999988887544332211 1 2777899999999999
Q ss_pred CCEEEEEEeccCC
Q 026695 212 NGVLNIVIPRTEK 224 (235)
Q Consensus 212 nGVL~I~lPK~~~ 224 (235)
+|.+.|.+-++..
T Consensus 85 d~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 85 DGKMIVILLKKSN 97 (179)
T ss_pred CCEEEEEEeeccc
Confidence 9977777655443
No 56
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=65.33 E-value=18 Score=26.66 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=29.0
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEeccC
Q 026695 190 YYNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 223 (235)
Q Consensus 190 ~F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lPK~~ 223 (235)
.|.-.+.|| +++++.|+..+.++.|+|+--+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 388899999 899999999999999999986643
No 57
>PF14913 DPCD: DPCD protein family
Probab=64.96 E-value=39 Score=29.08 Aligned_cols=71 Identities=15% Similarity=0.364 Sum_probs=54.2
Q ss_pred eEEeCcEEEEEE-EeCCCCCCcEEEEEEC--CEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCC------CcccC
Q 026695 134 VKEQDDCYKLRY-DVPGLGKDDVKITIHD--GVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPD------DAKAD 204 (235)
Q Consensus 134 I~e~~d~y~I~~-dLPGv~kedI~V~v~~--~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~------~Vd~~ 204 (235)
=.++...|.-++ .|| +.++--+|++++ +.++|+-. ...|.+.|.+|+ ..+.+
T Consensus 91 r~dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTt------------------NKKYyKk~~IPDl~R~~l~l~~~ 151 (194)
T PF14913_consen 91 RRDTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTT------------------NKKYYKKFSIPDLDRCGLPLEQS 151 (194)
T ss_pred EEcCccceEEEEccCC-CCccceEEEEcCCCcEEEEECc------------------CccceeEecCCcHHhhCCCcchh
Confidence 467888999998 566 577888888885 46888822 112778899997 24788
Q ss_pred ceEEEEeCCEEEEEEeccC
Q 026695 205 EIKAELKNGVLNIVIPRTE 223 (235)
Q Consensus 205 ~I~A~~~nGVL~I~lPK~~ 223 (235)
.++..+.|..|.|+-.|..
T Consensus 152 ~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 152 ALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred hceeeeecCeEEEEecCcH
Confidence 8999999999999987754
No 58
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=64.89 E-value=13 Score=27.35 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=27.6
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEec
Q 026695 190 YYNTSLALPDDAKADEIKAELKNGVLNIVIPR 221 (235)
Q Consensus 190 ~F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lPK 221 (235)
.|.-.+.|| +++++.|+..+.++.|+|+--+
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~ 38 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKVLGDFIEIHGKH 38 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 388888998 7999999999999999999854
No 59
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=62.75 E-value=21 Score=26.17 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=27.4
Q ss_pred EEEEEEECCCCcccCceEEEEeCC-EEEEEEeccC
Q 026695 190 YYNTSLALPDDAKADEIKAELKNG-VLNIVIPRTE 223 (235)
Q Consensus 190 ~F~R~i~LP~~Vd~~~I~A~~~nG-VL~I~lPK~~ 223 (235)
.|.-.+.|| ++.++.|+..+.+| +|+|+--+..
T Consensus 10 ~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~ 43 (92)
T cd06472 10 AHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKK 43 (92)
T ss_pred eEEEEEECC-CCChHhEEEEEeCCCEEEEEEEecc
Confidence 377889999 69999999999865 9999986543
No 60
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=62.36 E-value=13 Score=27.33 Aligned_cols=30 Identities=20% Similarity=0.500 Sum_probs=26.6
Q ss_pred cEEEEEEEeCCCCCCcEEEEEECCEEEEEE
Q 026695 139 DCYKLRYDVPGLGKDDVKITIHDGVLTIKG 168 (235)
Q Consensus 139 d~y~I~~dLPGv~kedI~V~v~~~~L~I~g 168 (235)
..|.-.+.||.+..+.++-++.++.|+|+-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~dGvL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYENGVLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEECCEEEEEE
Confidence 467777899999999999999999999984
No 61
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=62.22 E-value=18 Score=29.43 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=27.2
Q ss_pred EEEEEECCCCcccCceEEEEeCCEEEEEEeccC
Q 026695 191 YNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 223 (235)
Q Consensus 191 F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lPK~~ 223 (235)
|.-.+.|| +++.+.|...+++|.|+|+--+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 56667798 899999999999999999986543
No 62
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=61.49 E-value=20 Score=26.45 Aligned_cols=32 Identities=9% Similarity=0.231 Sum_probs=28.4
Q ss_pred EEEEEECCCCcccCceEEEEeCCEEEEEEeccC
Q 026695 191 YNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 223 (235)
Q Consensus 191 F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lPK~~ 223 (235)
|.-.+.|| ++.++.|+..++++.|+|+.-+..
T Consensus 9 ~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 9 FSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred EEEEEECC-CCChHHeEEEEECCEEEEEEEEee
Confidence 77888998 799999999999999999987643
No 63
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=57.55 E-value=27 Score=24.50 Aligned_cols=34 Identities=38% Similarity=0.566 Sum_probs=29.6
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEeccCC
Q 026695 190 YYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEK 224 (235)
Q Consensus 190 ~F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lPK~~~ 224 (235)
.|.-.+.|| +++++.|+..+.++.|.|+.-+...
T Consensus 8 ~~~i~~~lp-g~~~~~i~V~v~~~~l~I~g~~~~~ 41 (88)
T cd06464 8 AYVVEADLP-GFKKEDIKVEVEDGVLTISGEREEE 41 (88)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 488899999 4999999999999999999877654
No 64
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=57.32 E-value=21 Score=24.00 Aligned_cols=27 Identities=30% Similarity=0.655 Sum_probs=21.5
Q ss_pred CCCCCCcEEEEEECCEEEEEEEeeccc
Q 026695 148 PGLGKDDVKITIHDGVLTIKGEHKEEE 174 (235)
Q Consensus 148 PGv~kedI~V~v~~~~L~I~g~~~~~~ 174 (235)
|+++..+|+|.+.++.++|+|.-...+
T Consensus 12 ~~~~~~~i~v~v~~g~v~L~G~v~s~~ 38 (64)
T PF04972_consen 12 PWLPDSNISVSVENGVVTLSGEVPSQE 38 (64)
T ss_dssp -CTT-TTEEEEEECTEEEEEEEESSCH
T ss_pred cccCCCeEEEEEECCEEEEEeeCcHHH
Confidence 467777999999999999999986543
No 65
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=56.75 E-value=27 Score=28.05 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=27.4
Q ss_pred EEEEEECCCCcccCceEEEEeCCEEEEEEeccC
Q 026695 191 YNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 223 (235)
Q Consensus 191 F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lPK~~ 223 (235)
|.-.+.|| +++.+.|+-.+.++.|+|+.-+..
T Consensus 52 ~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 52 YRITAELP-GVDKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred EEEEEEcC-CCChHHeEEEEECCEEEEEEEecc
Confidence 55566788 899999999999999999997765
No 66
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=55.00 E-value=31 Score=25.39 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=27.0
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEecc
Q 026695 190 YYNTSLALPDDAKADEIKAELKNGVLNIVIPRT 222 (235)
Q Consensus 190 ~F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lPK~ 222 (235)
.|.-.+.|| +++++.|+-.++++.|+|+.-+.
T Consensus 8 ~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 8 EYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp EEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 378889999 89999999999999999998776
No 67
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=53.62 E-value=14 Score=25.83 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=15.3
Q ss_pred CceEEEEeCCEEEEEEeccCCCCCCceEEec
Q 026695 204 DEIKAELKNGVLNIVIPRTEKPKQDVKEVRI 234 (235)
Q Consensus 204 ~~I~A~~~nGVL~I~lPK~~~~~~~~~~I~I 234 (235)
..|+|.|+||||.--=|-.-++.. ...|.|
T Consensus 3 ~~I~aiYe~GvlkPl~~~~L~Eg~-~V~i~I 32 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEPVDLPEGE-EVKITI 32 (60)
T ss_dssp --EEEEEETTEEEECS-----TTE-EEEEEE
T ss_pred ceEEEEEECCEEEECCCCCCCCCC-EEEEEE
Confidence 468999999999765333333333 334433
No 68
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.85 E-value=60 Score=24.77 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=26.2
Q ss_pred eEEeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEE
Q 026695 134 VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKG 168 (235)
Q Consensus 134 I~e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g 168 (235)
+.+.+| .|....||++ .|.|..+...|.|.+
T Consensus 28 v~~eGD--~ivas~pgis--~ieik~E~kkL~v~t 58 (96)
T COG4004 28 VSEEGD--RIVASSPGIS--RIEIKPENKKLLVNT 58 (96)
T ss_pred Eeeccc--EEEEecCCce--EEEEecccceEEEec
Confidence 888888 7778899986 588888899999987
No 69
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=46.88 E-value=89 Score=26.48 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=31.3
Q ss_pred CCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 026695 152 KDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIP 220 (235)
Q Consensus 152 kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lP 220 (235)
|++|+|+++++.++|+|.+- +..+.|.-| .++...++|-|.|+..
T Consensus 13 P~~V~v~i~~~~v~VkGp~G------------------~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEGLVVTVKGPKG------------------ELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEEEECCEEEEECCCe------------------EEEEEecCC------cEEEEEECCEEEEEEC
Confidence 68999999999999998753 233333221 3555678888888754
No 70
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=45.54 E-value=63 Score=24.56 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=31.1
Q ss_pred CcccceEEeCcEEEEEEEeCCC-----CCCcEEEEEECCEEEEE
Q 026695 129 QLMGWVKEQDDCYKLRYDVPGL-----GKDDVKITIHDGVLTIK 167 (235)
Q Consensus 129 ~p~~dI~e~~d~y~I~~dLPGv-----~kedI~V~v~~~~L~I~ 167 (235)
.|.+.|+++++.|.|.+--+.- .++...|.-+++.+.|.
T Consensus 25 ~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g~~fI~ 68 (95)
T PF12992_consen 25 KPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDGNLFIE 68 (95)
T ss_pred CCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCCEEEEe
Confidence 4667799999999999876654 77777788778877776
No 71
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=45.38 E-value=1e+02 Score=25.77 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=31.3
Q ss_pred CCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 026695 152 KDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIP 220 (235)
Q Consensus 152 kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lP 220 (235)
|++|+|+++++.++|+|.+- +..+.+. |. .+....+++.|.|+.+
T Consensus 7 P~~V~v~i~~~~i~vkGp~G------------------~L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEGNIVTVKGPKG------------------EVTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeCCEEEEECCCe------------------EEEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 68899999999999998753 2333332 33 3555678888888754
No 72
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=44.94 E-value=45 Score=22.11 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=27.6
Q ss_pred CcEEEEEEEeCCC-CCCcEEEEEECCEEEEEEE
Q 026695 138 DDCYKLRYDVPGL-GKDDVKITIHDGVLTIKGE 169 (235)
Q Consensus 138 ~d~y~I~~dLPGv-~kedI~V~v~~~~L~I~g~ 169 (235)
...|...+.||+- .++.+...+.++.|+|.-.
T Consensus 47 ~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 47 YGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred eeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 5789999999984 8889999999999999753
No 73
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=44.27 E-value=94 Score=27.27 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=28.0
Q ss_pred EEEECCEEEEEEEeecccccCC-CCeEE------EEEEeeEEEEEEECCCC
Q 026695 157 ITIHDGVLTIKGEHKEEEEESS-DDEHW------SARSYGYYNTSLALPDD 200 (235)
Q Consensus 157 V~v~~~~L~I~g~~~~~~~~~~-~~~~~------~er~~g~F~R~i~LP~~ 200 (235)
|.++++.|+|++.+........ ..+.. ....||.|+-+++||..
T Consensus 60 v~v~~G~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVEDGNLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEECCEEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 5677999999998775421111 11111 12478999999999953
No 74
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=43.11 E-value=1.1e+02 Score=25.71 Aligned_cols=44 Identities=25% Similarity=0.466 Sum_probs=30.9
Q ss_pred CCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 026695 152 KDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIP 220 (235)
Q Consensus 152 kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lP 220 (235)
|++|+|+++++.|+|+|.+- ...+.| |. .+....+++.|.|...
T Consensus 11 P~~V~v~~~~~~v~v~Gp~G------------------~l~~~l--~~-----~i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDGNVVTVKGPKG------------------ELSRTL--HP-----GVTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeCCEEEEEcCCe------------------EEEEEc--CC-----CeEEEEECCEEEEEec
Confidence 68999999999999997743 233444 44 3455568888877754
No 75
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=42.42 E-value=69 Score=22.21 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=28.7
Q ss_pred cEEEEEEEeCC-CCCCcEEEEEECCEEEEEEEee
Q 026695 139 DCYKLRYDVPG-LGKDDVKITIHDGVLTIKGEHK 171 (235)
Q Consensus 139 d~y~I~~dLPG-v~kedI~V~v~~~~L~I~g~~~ 171 (235)
+.|.+.++||+ +++++...++.++.|.|+=.+.
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCCEEEEEEEeC
Confidence 56899999997 5999999999999999996654
No 76
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=40.62 E-value=56 Score=24.53 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=26.7
Q ss_pred cEEEEEEEeC-CCCCCcEEEEEE-CCEEEEEE
Q 026695 139 DCYKLRYDVP-GLGKDDVKITIH-DGVLTIKG 168 (235)
Q Consensus 139 d~y~I~~dLP-Gv~kedI~V~v~-~~~L~I~g 168 (235)
.+|.=.+.|| +++.++|.=.+. ++.|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 5778889998 789999999999 99999986
No 77
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=40.32 E-value=94 Score=21.29 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=28.7
Q ss_pred EeCcEEEEEEEeCCCCCCcEEEEEE-CCEEEEEEEee
Q 026695 136 EQDDCYKLRYDVPGLGKDDVKITIH-DGVLTIKGEHK 171 (235)
Q Consensus 136 e~~d~y~I~~dLPGv~kedI~V~v~-~~~L~I~g~~~ 171 (235)
-....|.|++..||+..-.-.|.+. +....|+...+
T Consensus 32 l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 32 LPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred cCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 3477999999999999888888888 56777776543
No 78
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=39.96 E-value=1e+02 Score=26.27 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=32.0
Q ss_pred CCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 026695 152 KDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIP 220 (235)
Q Consensus 152 kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lP 220 (235)
|++|+|+++++.++|+|.+- +..+. ||.. ...|....+||.|.|+-+
T Consensus 13 P~~V~V~i~~~~v~VkGp~G------------------~L~~~--~~~~--~~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKSRKVTVTGKYG------------------ELTRS--FRHL--PVDIKLSKDGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEECCEEEEECCCc------------------eEEEE--ecCC--CceEEEEeCCCEEEEEeC
Confidence 78999999999999997643 23333 3321 124566678888888754
No 79
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=38.93 E-value=1.2e+02 Score=25.42 Aligned_cols=44 Identities=23% Similarity=0.464 Sum_probs=30.7
Q ss_pred CCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 026695 152 KDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIP 220 (235)
Q Consensus 152 kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lP 220 (235)
|++|+|+++++.|+|+|.+- ...+.| |.. +....+++.|.|...
T Consensus 12 P~~V~v~~~~~~v~vkGp~G------------------~l~~~~--~~~-----v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTINGNVVTVKGPKG------------------ELSRTL--NPD-----VTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEECCEEEEECCCE------------------EEEEEc--CCC-----eEEEEECCEEEEEcC
Confidence 68999999999999997743 344444 433 344567887777654
No 80
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=38.23 E-value=65 Score=22.75 Aligned_cols=30 Identities=20% Similarity=0.473 Sum_probs=26.0
Q ss_pred EEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 026695 191 YNTSLALPDDAKADEIKAELKNGVLNIVIP 220 (235)
Q Consensus 191 F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lP 220 (235)
..-.|.+|..++.+.++..+.+.-|.|.++
T Consensus 10 V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 556778999999999999999898999886
No 81
>PRK10568 periplasmic protein; Provisional
Probab=37.94 E-value=54 Score=28.01 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=20.8
Q ss_pred CCCCCCcEEEEEECCEEEEEEEeecc
Q 026695 148 PGLGKDDVKITIHDGVLTIKGEHKEE 173 (235)
Q Consensus 148 PGv~kedI~V~v~~~~L~I~g~~~~~ 173 (235)
|+++..+|+|.+.++.++++|.-...
T Consensus 73 ~~i~~~~I~V~v~~G~V~L~G~V~s~ 98 (203)
T PRK10568 73 DNIKSTDISVKTHQKVVTLSGFVESQ 98 (203)
T ss_pred CCCCCCceEEEEECCEEEEEEEeCCH
Confidence 34456689999999999999998743
No 82
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=37.55 E-value=1.5e+02 Score=25.61 Aligned_cols=74 Identities=14% Similarity=0.275 Sum_probs=51.6
Q ss_pred EeCcEEEEEEEeCCCCCCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEE-ECCCCcccCceEEEEeCCE
Q 026695 136 EQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSL-ALPDDAKADEIKAELKNGV 214 (235)
Q Consensus 136 e~~d~y~I~~dLPGv~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i-~LP~~Vd~~~I~A~~~nGV 214 (235)
+.++...+.+.|-|+..|+|.|.+..+.|-|.-.--... . |.-.+ .|-..|++++-.-..+-..
T Consensus 81 Qs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK------------~---y~~~vnnLlk~I~vEks~~kvKtd~ 145 (224)
T KOG3260|consen 81 QSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGK------------N---YRMIVNNLLKPISVEKSSKKVKTDT 145 (224)
T ss_pred ccCCeeEEEEEeecccccceeEEecccceeeeeeecCCc------------c---eeeehhhhccccChhhcccccccce
Confidence 678889999999999999999999999888874422111 1 22111 1334688888777787676
Q ss_pred EEEEEeccCC
Q 026695 215 LNIVIPRTEK 224 (235)
Q Consensus 215 L~I~lPK~~~ 224 (235)
.-|.+.|.+.
T Consensus 146 v~I~~kkVe~ 155 (224)
T KOG3260|consen 146 VLILCKKVEN 155 (224)
T ss_pred EEEeehhhhc
Confidence 6677755443
No 83
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=36.31 E-value=16 Score=30.15 Aligned_cols=22 Identities=14% Similarity=0.459 Sum_probs=17.1
Q ss_pred CCcccCceEEEEeCCEEEEEEe
Q 026695 199 DDAKADEIKAELKNGVLNIVIP 220 (235)
Q Consensus 199 ~~Vd~~~I~A~~~nGVL~I~lP 220 (235)
+.+..+.--+.|.||||+|.|+
T Consensus 67 e~~~~~~~Dv~y~~GVLTl~lg 88 (156)
T KOG3413|consen 67 EEVPGEGFDVDYADGVLTLKLG 88 (156)
T ss_pred hhcCccccccccccceEEEEec
Confidence 4444566678899999999997
No 84
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=35.96 E-value=97 Score=26.23 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=27.9
Q ss_pred CCcEEEEEECCEEEEEEEeeccccc--CCCCeEE-EEEEeeEEEEEEECCCC
Q 026695 152 KDDVKITIHDGVLTIKGEHKEEEEE--SSDDEHW-SARSYGYYNTSLALPDD 200 (235)
Q Consensus 152 kedI~V~v~~~~L~I~g~~~~~~~~--~~~~~~~-~er~~g~F~R~i~LP~~ 200 (235)
++++. ++++.|+|++.++..... ....... ....||.|+-++++|..
T Consensus 31 ~~nv~--v~~g~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 31 ADNVE--FSDGGLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred cccEE--EECCeEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC
Confidence 55554 458889999876542200 0111111 22578999999999853
No 85
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=35.71 E-value=60 Score=27.31 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=28.1
Q ss_pred EEEEEEeC-CCCCCcEEEEEE-CCEEEEEEEeeccc
Q 026695 141 YKLRYDVP-GLGKDDVKITIH-DGVLTIKGEHKEEE 174 (235)
Q Consensus 141 y~I~~dLP-Gv~kedI~V~v~-~~~L~I~g~~~~~~ 174 (235)
|.=++-|| |++++.|.=.+. +|.|+|+|.+....
T Consensus 117 F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~ 152 (173)
T KOG3591|consen 117 FVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPK 152 (173)
T ss_pred EEEEecCCCCCChhheEEeeCCCceEEEEccCCCCc
Confidence 44456777 899999999999 88999999987755
No 86
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=33.61 E-value=1e+02 Score=25.88 Aligned_cols=44 Identities=25% Similarity=0.482 Sum_probs=30.4
Q ss_pred CCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 026695 152 KDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIP 220 (235)
Q Consensus 152 kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lP 220 (235)
|+.|+|+++++.|+|+|.+-+ .. ..||.. +....+++.|.|..+
T Consensus 12 P~~V~v~i~~~~v~vkGp~G~------------------l~--~~~~~~-----v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDDQIIKVKGPKGT------------------LS--RKIPDL-----ITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEECCEEEEECCCEE------------------EE--EECCCC-----eEEEEeCCEEEEEcC
Confidence 588999999999999977532 22 345543 455667887777654
No 87
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=32.44 E-value=1.1e+02 Score=20.72 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=30.1
Q ss_pred CcEEEEEEEeCC-CCCCcEEEEEECCEEEEEEEeecc
Q 026695 138 DDCYKLRYDVPG-LGKDDVKITIHDGVLTIKGEHKEE 173 (235)
Q Consensus 138 ~d~y~I~~dLPG-v~kedI~V~v~~~~L~I~g~~~~~ 173 (235)
+..|.+.++|++ +.+++...++.++.|.|.=.+...
T Consensus 40 ~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~ 76 (84)
T cd06463 40 GKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEP 76 (84)
T ss_pred CCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCC
Confidence 478999999998 488889999999999999766543
No 88
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=30.65 E-value=1e+02 Score=21.47 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=29.1
Q ss_pred CcEEEEEEEeCC-CCCCcEEEEEECCEEEEEEEeec
Q 026695 138 DDCYKLRYDVPG-LGKDDVKITIHDGVLTIKGEHKE 172 (235)
Q Consensus 138 ~d~y~I~~dLPG-v~kedI~V~v~~~~L~I~g~~~~ 172 (235)
+..|.+.++|++ +.+++....+.++.|.|.=.+..
T Consensus 41 ~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~ 76 (84)
T cd06466 41 GSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAE 76 (84)
T ss_pred CCeEEEecccccccCchhcEEEEeCeEEEEEEEcCC
Confidence 457999999987 58999999999999999966643
No 89
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter
Probab=29.26 E-value=84 Score=24.22 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=17.8
Q ss_pred CCCCCCcEEEEEECCEEEEEEE
Q 026695 148 PGLGKDDVKITIHDGVLTIKGE 169 (235)
Q Consensus 148 PGv~kedI~V~v~~~~L~I~g~ 169 (235)
-|+++++++|++-++.++++--
T Consensus 18 ~~l~~~ql~vsl~~G~v~L~nl 39 (118)
T PF12624_consen 18 ENLDKDQLSVSLWNGEVELRNL 39 (118)
T ss_pred hcCCHHHeeeeeccCceEEEcc
Confidence 4678899999999888888744
No 90
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=27.58 E-value=71 Score=24.64 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=15.4
Q ss_pred CceEEEEeCCEEEEEEec
Q 026695 204 DEIKAELKNGVLNIVIPR 221 (235)
Q Consensus 204 ~~I~A~~~nGVL~I~lPK 221 (235)
..+.+.+.+|||+|++|.
T Consensus 30 ~d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPD 47 (109)
T ss_dssp STEEEEEETTEEEEEETT
T ss_pred CceEEEccCCEEEEEECC
Confidence 358899999999999964
No 91
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=27.44 E-value=59 Score=25.03 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=14.7
Q ss_pred CceEEEEeCCEEEEEEe
Q 026695 204 DEIKAELKNGVLNIVIP 220 (235)
Q Consensus 204 ~~I~A~~~nGVL~I~lP 220 (235)
..+.+.+.+|||+|+++
T Consensus 28 ~d~D~e~~~gVLti~f~ 44 (105)
T cd00503 28 ADIDVETQGGVLTLTFG 44 (105)
T ss_pred cCEeeeccCCEEEEEEC
Confidence 45778889999999998
No 92
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=26.62 E-value=2.3e+02 Score=20.78 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=12.9
Q ss_pred ceEEEEeCCEEEEEEec
Q 026695 205 EIKAELKNGVLNIVIPR 221 (235)
Q Consensus 205 ~I~A~~~nGVL~I~lPK 221 (235)
.+++.++||-.++++-.
T Consensus 69 ~l~i~~kDgk~r~~~~~ 85 (91)
T PF14730_consen 69 TLIIDCKDGKYRLTITN 85 (91)
T ss_pred EEEEEEECCEEEEEEEE
Confidence 36788899988887743
No 93
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=26.61 E-value=1.3e+02 Score=22.40 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=28.6
Q ss_pred eEEeCcEEEEEEEe-CCCCCCcEEEEEEC--CEEEEEEEeec
Q 026695 134 VKEQDDCYKLRYDV-PGLGKDDVKITIHD--GVLTIKGEHKE 172 (235)
Q Consensus 134 I~e~~d~y~I~~dL-PGv~kedI~V~v~~--~~L~I~g~~~~ 172 (235)
|.++++.+.|.+.+ ||.+++.| +.+.+ +.|.|+-.-..
T Consensus 1 ~~~~~~g~~l~v~V~P~A~~~~i-~g~~~~~~~Lki~v~ApP 41 (87)
T TIGR00251 1 VRENDDGLLIRIYVQPKASKDSI-VGYNEWRKRVEVKIKAPP 41 (87)
T ss_pred CeEeCCeEEEEEEEeeCCCccee-ccccCCCCeEEEEEecCC
Confidence 45788899999988 89988888 44567 77888755443
No 94
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=26.25 E-value=2.2e+02 Score=24.26 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=30.9
Q ss_pred CCcEEEEEECCEEEEEEEeecccccCCCCeEEEEEEeeEEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 026695 152 KDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIP 220 (235)
Q Consensus 152 kedI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~R~i~LP~~Vd~~~I~A~~~nGVL~I~lP 220 (235)
|+.|+|+++++.|+|+|.+-. .. ..||.. + =.|....+++.|.|+-+
T Consensus 12 P~~V~V~i~~~~ItVkGpkG~------------------Ls--~~~~~~-~-~~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKDRIVTVKGKRGT------------------LT--KDLRHL-Q-LDFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeCCEEEEECCCcE------------------EE--EEcCCC-C-cEEEEEecCCEEEEEeC
Confidence 689999999999999987532 22 234431 0 12455667788888744
No 95
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=25.41 E-value=62 Score=25.00 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=14.2
Q ss_pred eEEEEeCCEEEEEEec
Q 026695 206 IKAELKNGVLNIVIPR 221 (235)
Q Consensus 206 I~A~~~nGVL~I~lPK 221 (235)
+.+.+.+|||+|+++.
T Consensus 29 ~D~e~~~gVLti~f~~ 44 (105)
T PRK00446 29 IDCERNGGVLTLTFEN 44 (105)
T ss_pred eeeeccCCEEEEEECC
Confidence 7788899999999985
No 96
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=24.88 E-value=1.7e+02 Score=24.88 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=17.8
Q ss_pred CCCcEEEEEECCEEEEEEEe
Q 026695 151 GKDDVKITIHDGVLTIKGEH 170 (235)
Q Consensus 151 ~kedI~V~v~~~~L~I~g~~ 170 (235)
-|++++|+++++.++|+|-+
T Consensus 11 ~P~gV~V~i~~~~v~vkGpk 30 (178)
T COG0097 11 IPAGVTVSIEGQVVTVKGPK 30 (178)
T ss_pred cCCCeEEEEeccEEEEECCC
Confidence 48999999999999999875
No 97
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=24.60 E-value=62 Score=24.83 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=14.3
Q ss_pred ceEEEEeCCEEEEEEec
Q 026695 205 EIKAELKNGVLNIVIPR 221 (235)
Q Consensus 205 ~I~A~~~nGVL~I~lPK 221 (235)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 36788899999999974
No 98
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=24.32 E-value=3.5e+02 Score=22.95 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=29.2
Q ss_pred CCCCcEEEEEECCEEEEEEEeecccccCCCCe----EE----EEEEeeEEEEEEECCCC
Q 026695 150 LGKDDVKITIHDGVLTIKGEHKEEEEESSDDE----HW----SARSYGYYNTSLALPDD 200 (235)
Q Consensus 150 v~kedI~V~v~~~~L~I~g~~~~~~~~~~~~~----~~----~er~~g~F~R~i~LP~~ 200 (235)
.+++.+. ++++.|+|++.+..........+ +. ....||.|+-++++|..
T Consensus 35 ~~~~nv~--v~~G~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 35 YRPENAY--VEDGNLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred CCCCCeE--EECCEEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 4556654 55999999988764321001111 11 12467889999999853
No 99
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=24.23 E-value=1.4e+02 Score=22.26 Aligned_cols=29 Identities=14% Similarity=0.371 Sum_probs=26.0
Q ss_pred EEEEEECCCCcccCceEEEEeCCEEEEEE
Q 026695 191 YNTSLALPDDAKADEIKAELKNGVLNIVI 219 (235)
Q Consensus 191 F~R~i~LP~~Vd~~~I~A~~~nGVL~I~l 219 (235)
..-+|+||.++..+.+...+...-|+|.+
T Consensus 17 V~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 17 VFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 56678899999999999999999999987
No 100
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=24.04 E-value=1.3e+02 Score=24.63 Aligned_cols=27 Identities=11% Similarity=0.251 Sum_probs=20.4
Q ss_pred ECCCCcccCceEEEEeCCEEEEEEecc
Q 026695 196 ALPDDAKADEIKAELKNGVLNIVIPRT 222 (235)
Q Consensus 196 ~LP~~Vd~~~I~A~~~nGVL~I~lPK~ 222 (235)
.=|+.|-+........+|-+++++|+.
T Consensus 150 ~~p~~V~p~~~~~~~~~~~~~~~lp~~ 176 (177)
T PF06964_consen 150 ENPENVVPVTSTVSAEGGTFTYTLPPY 176 (177)
T ss_dssp SSTTSSEEEEEEEEEETTEEEEEE-SS
T ss_pred CCCCEEEEEEeeEEecCCEEEEEeCCC
Confidence 457778888666777899999999973
No 101
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=23.87 E-value=94 Score=25.14 Aligned_cols=27 Identities=37% Similarity=0.746 Sum_probs=22.4
Q ss_pred CCCCCCcEEEEEECCEEEEEEEeeccc
Q 026695 148 PGLGKDDVKITIHDGVLTIKGEHKEEE 174 (235)
Q Consensus 148 PGv~kedI~V~v~~~~L~I~g~~~~~~ 174 (235)
.|+...+++|.++++.++++|......
T Consensus 38 ~~~~~~~i~V~v~~G~v~l~G~v~s~~ 64 (147)
T PRK11198 38 QGLGDADVNVQVEDGKATVSGDAASQE 64 (147)
T ss_pred cCCCcCCceEEEeCCEEEEEEEeCCHH
Confidence 367778899999999999999986543
No 102
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=23.05 E-value=73 Score=22.83 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=15.8
Q ss_pred eCCEEEEEEeccCCCCCCceEEe
Q 026695 211 KNGVLNIVIPRTEKPKQDVKEVR 233 (235)
Q Consensus 211 ~nGVL~I~lPK~~~~~~~~~~I~ 233 (235)
.+|.|++.+||+.-++. ++.++
T Consensus 9 ~~g~l~~YvpKKDLEE~-Vv~~e 30 (67)
T TIGR02934 9 RAGELSAYVPKKDLEEV-IVSVE 30 (67)
T ss_pred CCCCEEEEEECCcchhh-eeeee
Confidence 46789999999887665 45443
No 103
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=22.05 E-value=2.1e+02 Score=23.60 Aligned_cols=48 Identities=21% Similarity=0.455 Sum_probs=27.3
Q ss_pred CCCcEEEEEEC-CEEEEEEEeecccc-cCCCCeE--EEEEEeeEEEEEEECCCC
Q 026695 151 GKDDVKITIHD-GVLTIKGEHKEEEE-ESSDDEH--WSARSYGYYNTSLALPDD 200 (235)
Q Consensus 151 ~kedI~V~v~~-~~L~I~g~~~~~~~-~~~~~~~--~~er~~g~F~R~i~LP~~ 200 (235)
+++. |.+++ +.|+|++.+..... -...... .....||.|+-++++|..
T Consensus 28 ~~~n--v~~~~~G~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~ 79 (210)
T cd00413 28 SPNN--VYVENDGGLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG 79 (210)
T ss_pred CccC--EEEeCCCeEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC
Confidence 4454 34555 78888887654200 0001111 223567999999999974
No 104
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=20.78 E-value=4.3e+02 Score=23.69 Aligned_cols=44 Identities=18% Similarity=0.419 Sum_probs=26.9
Q ss_pred EEEEECCEEEEEEEeecccc---------cCCCCeEE------EEEEeeEEEEEEECCC
Q 026695 156 KITIHDGVLTIKGEHKEEEE---------ESSDDEHW------SARSYGYYNTSLALPD 199 (235)
Q Consensus 156 ~V~v~~~~L~I~g~~~~~~~---------~~~~~~~~------~er~~g~F~R~i~LP~ 199 (235)
.+.++++.|+|++.+..... .....+.. ....||.|+-+++||.
T Consensus 45 Nv~v~dG~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p 103 (269)
T cd02177 45 NVVISNGILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGAD 103 (269)
T ss_pred ceEEeCCEEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCC
Confidence 45778999999998764221 11111111 1146889999999754
Done!