RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 026695
(235 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 121 bits (305), Expect = 5e-35
Identities = 39/102 (38%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 134 VKEQDDCYKLRYDVPGLGKDDVKITIHDG-VLTIKGEHKEEEEESSDDEHWSARSYGYYN 192
KE + + + D+PG+ K++VK+ + DG VL + GE +E+E+ +D H RS G +
Sbjct: 48 WKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFV 107
Query: 193 TSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRI 234
L +DAK +E+KA L+NGVL + +P+ E K +VK ++I
Sbjct: 108 RRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQI 149
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 116 bits (294), Expect = 6e-34
Identities = 32/91 (35%), Positives = 51/91 (56%)
Query: 134 VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNT 193
+KE+ + + L D+PG+ +++ + G+L+I+GE K E ++ R YG ++
Sbjct: 9 IKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHR 68
Query: 194 SLALPDDAKADEIKAELKNGVLNIVIPRTEK 224
ALPD A AD I A +NGVL I IP+
Sbjct: 69 RFALPDSADADGITAAGRNGVLEIRIPKRPA 99
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 115 bits (289), Expect = 2e-32
Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 134 VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWS-ARSYGYYN 192
+ E D K+ +PG+ K+D+ + L I+ + S+ +S
Sbjct: 61 IIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIY 120
Query: 193 TSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEV 232
++ LP K + A+ +NGVL++++P+ E + +
Sbjct: 121 RTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINI 160
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 107 bits (270), Expect = 4e-30
Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 10/128 (7%)
Query: 105 LGNALMQATENINRIFENLNFTPSQLMGWVKEQDDCYKLRYDVPGLGKDDVKITIH-DGV 163
LG L + +E ++R F L + P + E+ + D+ G K+ +K +
Sbjct: 4 LGKELQKRSEELSRGFYELVYPPVD----MYEEGGYLVVVADLAGFNKEKIKARVSGQNE 59
Query: 164 LTIKGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADE-IKAELKNGVLNIVIPRT 222
L I+ E + E + + Y + LP + D I + +NGVL I IP
Sbjct: 60 LIIEAEREITEP----GVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIA 115
Query: 223 EKPKQDVK 230
+
Sbjct: 116 GTSVFKFE 123
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 77.2 bits (190), Expect = 1e-18
Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 8/102 (7%)
Query: 134 VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNT 193
V+ D + + DV +D+ + + + + I G+H E +++ ++
Sbjct: 7 VRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHG-------YISREFHR 59
Query: 194 SLALPDDAKADEIKAEL-KNGVLNIVIPRTEKPKQDVKEVRI 234
LP + + L +G+L P+ R
Sbjct: 60 RYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERA 101
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 76.4 bits (188), Expect = 2e-18
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 8/95 (8%)
Query: 134 VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNT 193
V + + DV +++ + + + + H+E +E R Y
Sbjct: 6 VPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRY----- 60
Query: 194 SLALPDDAKADEIKAEL-KNGVLNIVIPRTEKPKQ 227
LP + + L GVL+I
Sbjct: 61 --RLPPGVDPAAVTSALSPEGVLSIQATPASAQAS 93
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 77.3 bits (190), Expect = 6e-18
Identities = 19/103 (18%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 134 VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNT 193
++ + D + + DV +++K+ + V+ + G+H+E ++E ++
Sbjct: 68 MRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHG-------FISREFHR 120
Query: 194 SLALPDDAKADEIKAEL-KNGVLNIVIPRTEKPKQDVKEVRIH 235
+P D I + L +GVL + PR + + + + I
Sbjct: 121 KYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPE-RTIPIT 162
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 74.0 bits (182), Expect = 1e-17
Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 135 KEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTS 194
+ D + + DV +++K+ + V+ + G+H+E ++E R Y
Sbjct: 2 AMEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKY------ 55
Query: 195 LALPDDAKADEIKAEL-KNGVLNIVIPRTEKPK 226
+P D I + + +GVL + PR +
Sbjct: 56 -RIPADVDPLTITSSMSSDGVLTVNGPRKQVSG 87
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 70.1 bits (172), Expect = 4e-16
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 135 KEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNTS 194
D +++ DV D++ + DGV+ I G+H ++E R Y
Sbjct: 3 SHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKY------ 56
Query: 195 LALPDDAKADEIKAEL-KNGVLNIVIPRTE 223
LP ++ + L G L + P +
Sbjct: 57 -TLPPGVDPTQVSSSLSPEGTLTVEAPMPK 85
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 66.0 bits (160), Expect = 6e-13
Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 134 VKEQDDCYKLRYDV---PGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGY 190
V +D K+ ++ P DVK+ + + G +EE+ E+ S +
Sbjct: 226 VTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEK----TENASHSEHRE 281
Query: 191 YNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 223
+ + P+ A + +AE+ +G++ + P +
Sbjct: 282 FYKAFVTPEVVDASKTQAEIVDGLMVVEAPLFK 314
Score = 62.2 bits (150), Expect = 1e-11
Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Query: 134 VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWSARSYGYYNT 193
K+ +K+ ++V +++ I L ++ + +++ E RS
Sbjct: 107 GKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVG-RSI----- 160
Query: 194 SLALPDDAKADEIKAEL-KNGVLNIVIPRTEKPKQDVKEVRIH 235
LP + I+A + + VL I P E + +K
Sbjct: 161 --PLPPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIKLSPEK 201
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.001
Identities = 43/281 (15%), Positives = 86/281 (30%), Gaps = 89/281 (31%)
Query: 7 ALRNVQQRVSTSSPSLANLHNNLGERSASTI---GGVQ--RQKWSNEL----------LK 51
A ++ S S L +GE +A + GG Q + EL +
Sbjct: 129 ARIMAKRPFDKKSNSA--LFRAVGEGNAQLVAIFGG-QGNTDDYFEELRDLYQTYHVLVG 185
Query: 52 RFMATAANDEKKQDREVAVTEKRSRLFPRRRGRRGSLWRNN-----DIPVLAEFFPSGLG 106
+ +A + + T ++F + G W N D L S
Sbjct: 186 DLIKFSA---ETLSELIRTTLDAEKVFTQ--GLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 107 NALMQATENINRIFENLNFTPSQLMGWVK-------------------EQDDCYK----- 142
++Q + + L FTP +L ++K + +
Sbjct: 241 IGVIQLA-HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 143 --------LR----YDVPGLGKDDVKITIHDGV------LTIKGEHKEEEEESSDDEHWS 184
+R Y L ++ ++ + L+I +E+ ++ +
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN----- 354
Query: 185 ARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVI---PRT 222
N+ L P + ++ L NG N+V+ P++
Sbjct: 355 -----KTNSHL--PAGKQ---VEISLVNGAKNLVVSGPPQS 385
Score = 32.7 bits (74), Expect = 0.11
Identities = 40/230 (17%), Positives = 70/230 (30%), Gaps = 58/230 (25%)
Query: 15 VSTSSPSLANLHNNLGERSASTIGGVQRQKWSN-------ELLKRFMATAAN--DEKKQD 65
V T+S +A+ L E+ + ++ EL+ +F+ ++ + K
Sbjct: 22 VPTASFFIAS---QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 66 REVAVTEKRSRLFPRRRGRRGSLWRNNDIPVLAEFFPSGLGNALM----------QATEN 115
+ V F L NDI LA L+ A
Sbjct: 79 QFDQVLNLCLTEF-----ENCYL-EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 116 INRIFENLNFTPSQLMGWVKE-----------Q---DDCYK-LR--YDVPGLGKDDVKIT 158
R F+ + S L V E Q DD ++ LR Y + D+ I
Sbjct: 133 AKRPFDKK--SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL-IK 189
Query: 159 IHDGVLT--IKGEHKEEE--EESSDDEHW-----SARSYGYYNTS-LALP 198
L+ I+ E+ + + W + Y + ++ P
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.003
Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 60/239 (25%)
Query: 6 LALRNVQQR-------------VSTSSPSLANLHNNLGERSASTIGGVQRQKW-----SN 47
L L NVQ ++T + + L + + I
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF---LSAATTTHISLDHHSMTLTPDEVK 304
Query: 48 ELLKRFMATAANDEKKQDRE-----VAVTEKRSRLFPRRRGRRGSLWRNNDIPVLAEFFP 102
LL +++ D ++ +++ + R W++ + L
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN----WKHVNCDKLTTIIE 360
Query: 103 SGLGNALMQATENINR-------IF-ENLNFTPSQLMG--W--VKEQDD------CYKLR 144
S L N L R +F + + P+ L+ W V + D +K
Sbjct: 361 SSL-NVL---EPAEYRKMFDRLSVFPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 145 YDVPGLGKD--DVKITIHDGVLTIKGEHKEEEE-ESSDDEHWSARSYGYYNTSLALPDD 200
+ K + I+I L +K + + E S +H++ + + D
Sbjct: 416 L----VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.044
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 193 TSLAL--PDDAKADEIKAELK 211
SL L D A A IKA ++
Sbjct: 27 ASLKLYADDSAPALAIKATME 47
Score = 26.8 bits (58), Expect = 4.3
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 7 ALRNVQQRVS----TSSPSLA 23
AL+ +Q + S+P+LA
Sbjct: 21 ALKKLQASLKLYADDSAPALA 41
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 27.2 bits (60), Expect = 4.8
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 98 AEFFPSGLGNALMQATENINRIFENLNFTPSQLMGW---VKEQDDCYKLRYDVPGLGKDD 154
AEF P + + + + L Q + ++R +PG K
Sbjct: 261 AEFTPLSVTVVPDVTKGDWQPLIDALPNFVEQAEQAPKPITIDTHNRQVRLFLPGFDKKQ 320
Query: 155 VKITIHDGVLTIK 167
VK+T + +T++
Sbjct: 321 VKLTQYGPEVTVE 333
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.378
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,525,548
Number of extensions: 202404
Number of successful extensions: 447
Number of sequences better than 10.0: 1
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 21
Length of query: 235
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 144
Effective length of database: 4,160,982
Effective search space: 599181408
Effective search space used: 599181408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.5 bits)