RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 026695
         (235 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 86.4 bits (213), Expect = 5e-22
 Identities = 39/128 (30%), Positives = 69/128 (53%), Gaps = 7/128 (5%)

Query: 114 ENINRIFENLNFTPSQLMGW------VKEQDDCYKLRYDVPGLGKDDVKITIH-DGVLTI 166
           +    I   ++   S+   +       KE  + +  + D+PG+ K++VK+ +    VL +
Sbjct: 21  DTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVV 80

Query: 167 KGEHKEEEEESSDDEHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPK 226
            GE  +E+E+ +D  H   RS G +     L +DAK +E+KA L+NGVL + +P+ E  K
Sbjct: 81  SGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKK 140

Query: 227 QDVKEVRI 234
            +VK ++I
Sbjct: 141 PEVKAIQI 148


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 81.6 bits (201), Expect = 1e-20
 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 1/100 (1%)

Query: 134 VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGEHKEEEEESSDDEHWS-ARSYGYYN 192
           + E D   K+   +PG+ K+D+ +      L I+ +        S+   +S         
Sbjct: 15  IIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIY 74

Query: 193 TSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEV 232
            ++ LP   K +   A+ +NGVL++++P+ E   +    +
Sbjct: 75  RTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINI 114


>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate
          hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 292

 Score = 28.4 bits (62), Expect = 0.83
 Identities = 6/37 (16%), Positives = 13/37 (35%)

Query: 55 ATAANDEKKQDREVAVTEKRSRLFPRRRGRRGSLWRN 91
                  K   +  + E+++  +   R R G L + 
Sbjct: 15 LLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQG 51


>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 79

 Score = 25.2 bits (55), Expect = 2.7
 Identities = 4/20 (20%), Positives = 10/20 (50%)

Query: 153 DDVKITIHDGVLTIKGEHKE 172
           +DV        +T++G++  
Sbjct: 9   EDVDAEQDHLDITVEGDNGS 28


>d1rmva_ a.24.5.1 (A:) Ribgrass mosaic virus {Ribgrass mosaic virus
           [TaxId: 51680]}
          Length = 156

 Score = 25.9 bits (57), Expect = 3.4
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 10/55 (18%)

Query: 88  LWRNNDIPVLAEFFPSGLGNALMQATENINRIFE---NLNFTPSQLMGWVKEQDD 139
           ++ N+   V+   +      ALM++ +  NRI E       + S++    +  DD
Sbjct: 69  VYVNS--AVIKPLY-----EALMKSFDTRNRIIETEEESRPSASEVANATQRVDD 116


>d1cgme_ a.24.5.1 (E:) Cucumber green mottle mosaic virus {Cucumber
           green mottle mosaic virus, strain watermelon [TaxId:
           12235]}
          Length = 160

 Score = 25.2 bits (55), Expect = 5.1
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 10/55 (18%)

Query: 88  LWRNNDIPVLAEFFPSGLGNALMQATENINRIFE---NLNFTPSQLMGWVKEQDD 139
            + N   PVL   F      +L+ +T+  NR+ E     N T ++ +  VK  DD
Sbjct: 69  AFLNG--PVLRPIF-----VSLLSSTDTRNRVIEVVDPSNPTTAESLNAVKRTDD 116


>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 87

 Score = 24.1 bits (52), Expect = 6.2
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 153 DDVKITIHDGVLTIKGEHKE 172
           ++V IT+    + +KG    
Sbjct: 14  ENVDITLKGRTVIVKGPRGT 33


>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 78

 Score = 24.0 bits (52), Expect = 6.3
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 153 DDVKITIHDGVLTIKG 168
             V +   DGV  +KG
Sbjct: 9   SGVTVNAQDGVFKVKG 24


>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus
           thermophilus [TaxId: 274]}
          Length = 71

 Score = 23.6 bits (51), Expect = 8.0
 Identities = 4/16 (25%), Positives = 8/16 (50%)

Query: 153 DDVKITIHDGVLTIKG 168
             V + +  G + +KG
Sbjct: 2   KGVSVEVAPGRVKVKG 17


>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 75

 Score = 23.7 bits (51), Expect = 8.0
 Identities = 5/16 (31%), Positives = 10/16 (62%)

Query: 153 DDVKITIHDGVLTIKG 168
             V +T++   +T+KG
Sbjct: 6   AGVTVTVNGNTVTVKG 21


>d1ei7a_ a.24.5.1 (A:) Tobacco mosaic virus coat protein {Tobacco
           mosaic virus, vulgare strain [TaxId: 12242]}
          Length = 158

 Score = 24.4 bits (53), Expect = 8.8
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 10/55 (18%)

Query: 88  LWRNNDIPVLAEFFPSGLGNALMQATENINRIFE---NLNFTPSQLMGWVKEQDD 139
           ++R N   VL          AL+ A +  NRI E     N T ++ +   +  DD
Sbjct: 69  VYRYN--AVLDPLV-----TALLGAFDTRNRIIEVENQANPTTAETLDATRRVDD 116


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 847,470
Number of extensions: 38287
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 13
Length of query: 235
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 152
Effective length of database: 1,268,006
Effective search space: 192736912
Effective search space used: 192736912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.6 bits)