BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026696
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PK9|B Chain B, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|D Chain D, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|B Chain B, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|D Chain D, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 293
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%)
Query: 69 SLNTFHGVRAPNISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRL 128
+L +H PNISI Y R+ K+++ + YID L +PD + SL HR
Sbjct: 63 TLTRYHSKIPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRF 122
Query: 129 LVTSVMVASKTMDDVHYNNAFYARVGGV 156
L+T+ VA+K + D NA YA+VGGV
Sbjct: 123 LLTATTVATKGLCDSFSTNAHYAKVGGV 150
>pdb|3RZP|A Chain A, Crystal Structure Of The C194a Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq1
pdb|3RZP|B Chain B, Crystal Structure Of The C194a Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq1
pdb|3RZP|C Chain C, Crystal Structure Of The C194a Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq1
pdb|3RZP|D Chain D, Crystal Structure Of The C194a Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq1
pdb|3RJ4|A Chain A, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae
pdb|3RJ4|B Chain B, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae
pdb|3UXV|A Chain A, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae Complexed With Nadp And Preq
pdb|3UXV|B Chain B, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae Complexed With Nadp And Preq
pdb|3UXV|C Chain C, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae Complexed With Nadp And Preq
pdb|3UXV|D Chain D, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae Complexed With Nadp And Preq
Length = 290
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 39 VARNDRLADSLSRQLTKGNGVFSGSTPIGTSLNTFHGVRAPNISIAKYLERIYKYTNCSP 98
A+ + +++ L L K N + + G+ +HG + ++ +YL ++
Sbjct: 178 AAQGEEVSEVLHSHLLKSNALITNQPDWGSVEIAYHGAKXNREALLRYLVSFREHNEFHE 237
Query: 99 SCFVVGYVYIDRLLHRHPDSLVV 121
C V ++ D + P SL V
Sbjct: 238 QC--VERIFTDIXRYCQPQSLTV 258
>pdb|3S19|A Chain A, Crystal Structure Of The R262l Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq0
pdb|3S19|B Chain B, Crystal Structure Of The R262l Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq0
pdb|3S19|C Chain C, Crystal Structure Of The R262l Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq0
pdb|3S19|D Chain D, Crystal Structure Of The R262l Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq0
pdb|3UXJ|A Chain A, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae Complexed With Nadp And Preq0
pdb|3UXJ|B Chain B, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae Complexed With Nadp And Preq0
pdb|3UXJ|C Chain C, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae Complexed With Nadp And Preq0
pdb|3UXJ|D Chain D, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae Complexed With Nadp And Preq0
Length = 290
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 39 VARNDRLADSLSRQLTKGNGVFSGSTPIGTSLNTFHGVRAPNISIAKYLERIYKYTNCSP 98
A+ + +++ L L K N + + G+ +HG + ++ +YL ++
Sbjct: 178 AAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKXNREALLRYLVSFREHNEFHE 237
Query: 99 SCFVVGYVYIDRLLHRHPDSLVVSLNVHRL 128
C V ++ D + P SL V RL
Sbjct: 238 QC--VERIFTDIXRYCQPQSLTVYARYTRL 265
>pdb|3RZQ|A Chain A, Crystal Structure Of The H233a Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq0
pdb|3RZQ|B Chain B, Crystal Structure Of The H233a Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq0
pdb|4GHM|A Chain A, Crystal Structure Of The H233a Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq0
pdb|4GHM|B Chain B, Crystal Structure Of The H233a Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq0
Length = 290
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 39 VARNDRLADSLSRQLTKGNGVFSGSTPIGTSLNTFHGVRAPNISIAKYLERIYKYTNCSP 98
A+ + +++ L L K N + + G+ +HG + ++ +YL ++ +
Sbjct: 178 AAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKXNREALLRYLVSFREHNEFAE 237
Query: 99 SCFVVGYVYIDRLLHRHPDSLVV 121
C V ++ D + P SL V
Sbjct: 238 QC--VERIFTDIXRYCQPQSLTV 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,117,250
Number of Sequences: 62578
Number of extensions: 214751
Number of successful extensions: 406
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 5
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)