BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026696
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LJ45|CCU11_ARATH Cyclin-U1-1 OS=Arabidopsis thaliana GN=CYCU1-1 PE=1 SV=1
Length = 210
Score = 243 bits (621), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 136/204 (66%), Positives = 152/204 (74%), Gaps = 14/204 (6%)
Query: 1 MLAATGYSTYQGRLPEPSQNETTTPRVLTIIASVMEKLVARNDRLADSLSRQLTKGNGVF 60
ML A G + S E TPRVLTII+ VMEKLVARN+ LA + TKG
Sbjct: 1 MLTAAGDDELDPVVGPESATEAATPRVLTIISHVMEKLVARNEWLA-----KQTKG---- 51
Query: 61 SGSTPIGTSLNTFHGVRAPNISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLV 120
G SL FHGVRAP+ISIAKYLERIYKYT CSP+CFVVGYVYIDRL H+HP SLV
Sbjct: 52 -----FGKSLEAFHGVRAPSISIAKYLERIYKYTKCSPACFVVGYVYIDRLAHKHPGSLV 106
Query: 121 VSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGVSNAELNRLELELLFLLDFGVMVSS 180
VSLNVHRLLVT VM+A+K +DDVHYNN FYARVGGVSNA+LN++ELELLFLLDF V VS
Sbjct: 107 VSLNVHRLLVTCVMIAAKILDDVHYNNEFYARVGGVSNADLNKMELELLFLLDFRVTVSF 166
Query: 181 RVFESYCLHLEKEMLVNGTTSKIE 204
RVFESYC HLEKEM +N S ++
Sbjct: 167 RVFESYCFHLEKEMQLNDAVSSLK 190
>sp|Q75HV0|CCP31_ORYSJ Cyclin-P3-1 OS=Oryza sativa subsp. japonica GN=CYCP3-1 PE=3 SV=1
Length = 236
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 132/215 (61%), Gaps = 16/215 (7%)
Query: 16 EPSQNETTTPRVLTIIASVMEKLVARNDRLADSLSRQLTKGNGVFSGSTPIGTSLNTFHG 75
+ +N T P+VL ++A+ +++ V +N+ L DS I S FHG
Sbjct: 27 QSKKNNTEYPKVLLLLAAYLDRSVQKNEDLLDS---------------NKIKDSSTIFHG 71
Query: 76 VRAPNISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMV 135
RAP++SI Y ERI+KY+ CSPSCFV+ +Y++R L + P + SL+VHRLL+TSV+V
Sbjct: 72 HRAPDLSIKLYAERIFKYSECSPSCFVLALIYMERYLQQ-PHVYMTSLSVHRLLITSVVV 130
Query: 136 ASKTMDDVHYNNAFYARVGGVSNAELNRLELELLFLLDFGVMVSSRVFESYCLHLEKEML 195
A+K DD +NNAFYARVGG+S E+NRLEL+LLF LDF + V F SYCL LEKE +
Sbjct: 131 AAKFTDDAFFNNAFYARVGGISTVEMNRLELDLLFNLDFRLKVDLETFGSYCLQLEKETM 190
Query: 196 VNGTTSKIEKAFISNPVDDVTEISAENTASCSPLL 230
V I++ N D++ S+ + + S L+
Sbjct: 191 VLVIDRPIQQVHGVNSTKDLSRNSSIDESCKSELM 225
>sp|Q0J9W0|CCP11_ORYSJ Cyclin-P1-1 OS=Oryza sativa subsp. japonica GN=CYCP1-1 PE=3 SV=2
Length = 264
Score = 168 bits (426), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 113/174 (64%), Gaps = 5/174 (2%)
Query: 25 PRVLTIIASVMEKLVARNDRLADSLSRQLTKGNGVFSGSTPIGTSLNTFHGVRAPNISIA 84
P L ++A +++LVARND + L+ G +G + G AP I +A
Sbjct: 23 PPELDMVARAVQRLVARNDAV-----EALSGGGEAAAGLGAGMAAFEAARGAPAPRIGVA 77
Query: 85 KYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVH 144
+YLER+++Y P C+VV Y Y+D HR P + V S NVHRLL+ ++VASK +DD H
Sbjct: 78 QYLERVHRYAGLEPECYVVAYAYVDMAAHRRPAAAVASRNVHRLLLACLLVASKVLDDFH 137
Query: 145 YNNAFYARVGGVSNAELNRLELELLFLLDFGVMVSSRVFESYCLHLEKEMLVNG 198
+NNAF+ARVGGVSNAE+NRLELELL +LDF VM+S RV+E Y HLEKE +G
Sbjct: 138 HNNAFFARVGGVSNAEMNRLELELLAVLDFEVMLSHRVYELYREHLEKEARRDG 191
>sp|O80513|CCU41_ARATH Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYCU4-1 PE=1 SV=1
Length = 202
Score = 166 bits (420), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 108/162 (66%), Gaps = 4/162 (2%)
Query: 33 SVMEKLVARNDRLADSLSRQLTKGNGVFSGSTPIGTSLNTFHGVRAPNISIAKYLERIYK 92
SVM KL+A SL ++ + N + ++ FHG+ P I+I YLERI+K
Sbjct: 8 SVMSKLIA----FLSSLLERVAESNDLTRRVATQSQRVSVFHGLSRPTITIQSYLERIFK 63
Query: 93 YTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYAR 152
Y NCSPSCFVV YVY+DR HR P + S NVHRLL+TSVMVA+K +DD++YNNA+YA+
Sbjct: 64 YANCSPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNNAYYAK 123
Query: 153 VGGVSNAELNRLELELLFLLDFGVMVSSRVFESYCLHLEKEM 194
VGG+S E+N LEL+ LF L F + V+ F +Y +L+KEM
Sbjct: 124 VGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEM 165
>sp|Q9M205|CCU22_ARATH Cyclin-U2-2 OS=Arabidopsis thaliana GN=CYCU2-2 PE=1 SV=1
Length = 230
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 123/189 (65%), Gaps = 12/189 (6%)
Query: 19 QNETTTPRVLTIIASVMEKLVARNDRLADSLSRQLTKGNGVFSGSTPIGTSLNTFHGVRA 78
QN + TP V+++++S++++ + RN+R+ SR+ +G G T I F
Sbjct: 24 QNNSKTPLVISVLSSLIDRTLTRNERI----SRRALPSSGA-GGKTQI------FDCREI 72
Query: 79 PNISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASK 138
P+++I YL RI++YT PS +VV YVYIDR +P + NVHRLL+T++M+ASK
Sbjct: 73 PDMTIQSYLGRIFRYTKAGPSVYVVAYVYIDRFCQTNPGFRISLTNVHRLLITTIMIASK 132
Query: 139 TMDDVHYNNAFYARVGGVSNAELNRLELELLFLLDFGVMVSSRVFESYCLHLEKEMLVNG 198
++D++Y N+++A+VGG+ +LN+LELE LFL+ F + V+ VFESYC HLE+E+ G
Sbjct: 133 YVEDLNYRNSYFAKVGGLETEDLNKLELEFLFLMGFKLHVNVSVFESYCCHLEREVSFGG 192
Query: 199 TTSKIEKAF 207
+IEKA
Sbjct: 193 GY-QIEKAL 200
>sp|Q8LB60|CCU31_ARATH Cyclin-U3-1 OS=Arabidopsis thaliana GN=CYCU3-1 PE=1 SV=2
Length = 221
Score = 154 bits (389), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 69/125 (55%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
Query: 69 SLNTFHGVRAPNISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRL 128
S+ F G P ISIA YL+RI+KY+ CSPSCFV+ ++YID LH+ +L+ LNVHRL
Sbjct: 61 SVTVFDGRSPPEISIAHYLDRIFKYSCCSPSCFVIAHIYIDHFLHK-TRALLKPLNVHRL 119
Query: 129 LVTSVMVASKTMDDVHYNNAFYARVGGVSNAELNRLELELLFLLDFGVMVSSRVFESYCL 188
++T+VM+A+K DD ++NNA+YARVGGV+ ELNRLE+ELLF LDF + V + F ++C
Sbjct: 120 IITTVMLAAKVFDDRYFNNAYYARVGGVTTRELNRLEMELLFTLDFKLQVDPQTFHTHCC 179
Query: 189 HLEKE 193
LEK+
Sbjct: 180 QLEKQ 184
>sp|Q7XC35|CCP41_ORYSJ Cyclin-P4-1 OS=Oryza sativa subsp. japonica GN=CYCP4-1 PE=2 SV=1
Length = 212
Score = 152 bits (383), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 109/172 (63%), Gaps = 12/172 (6%)
Query: 23 TTPRVLTIIASVMEKLVARNDRLADSLSRQLTKGNGVFSGSTPIGTSLNTFHGVRAPNIS 82
PRV+ I++S+++++ RND A + + +++ F G+ P IS
Sbjct: 9 AVPRVVAILSSLLQRVAERNDAAAAAAAVGEEA------------AAVSAFQGLTKPAIS 56
Query: 83 IAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDD 142
I YLERI+++ NCSPSC+VV Y+Y+DR L R P V S NVHRLL+TSV+ A K +DD
Sbjct: 57 IGGYLERIFRFANCSPSCYVVAYIYLDRFLRRRPALAVDSFNVHRLLITSVLTAVKFVDD 116
Query: 143 VHYNNAFYARVGGVSNAELNRLELELLFLLDFGVMVSSRVFESYCLHLEKEM 194
+ YNNA++ARVGG+S E+N LE++ LF + F + V+ F SYC L+ EM
Sbjct: 117 ICYNNAYFARVGGISLMEMNYLEVDFLFGIAFDLNVTPAAFASYCAVLQSEM 168
>sp|Q9SHD3|CCU21_ARATH Cyclin-U2-1 OS=Arabidopsis thaliana GN=CYCU2-1 PE=1 SV=1
Length = 222
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 121/187 (64%), Gaps = 16/187 (8%)
Query: 20 NETTTPRVLTIIASVMEKLVARNDRLADSLSRQLTKGNGVFSGSTPIGTSLNTFHGVRAP 79
+ T P V+++++S++E+ +ARN+R++ S G F G T + F P
Sbjct: 23 DSNTVPLVISVLSSLIERTLARNERISRSY--------GGF-GKTRV------FDCREIP 67
Query: 80 NISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKT 139
+++I YLERI++YT PS +VV YVYIDR + + NVHRLL+T++M+ASK
Sbjct: 68 DMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQNNQGFRISLTNVHRLLITTIMIASKY 127
Query: 140 MDDVHYNNAFYARVGGVSNAELNRLELELLFLLDFGVMVSSRVFESYCLHLEKEMLVNGT 199
++D++Y N+++A+VGG+ +LN LELE LFL+ F + V+ VFESYC HLE+E+ + G
Sbjct: 128 VEDMNYKNSYFAKVGGLETEDLNNLELEFLFLMGFKLHVNVSVFESYCCHLEREVSIGGG 187
Query: 200 TSKIEKA 206
+IEKA
Sbjct: 188 Y-QIEKA 193
>sp|Q9LY16|CCU42_ARATH Cyclin-U4-2 OS=Arabidopsis thaliana GN=CYCU4-2 PE=1 SV=1
Length = 216
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 121/204 (59%), Gaps = 16/204 (7%)
Query: 6 GYSTYQGRLPEPSQNETTTPRVLTIIASVMEKLVARNDRLADSLSRQLTKGNGVFSGSTP 65
Y Q + + P V+T ++S+++++ ND LSR + +
Sbjct: 2 AYQIDQKMIHDQEPMAEIMPNVITAMSSLLQRVSETND----DLSRPFREHKRI------ 51
Query: 66 IGTSLNTFHGVRAPNISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNV 125
+ F+ V P+ISI Y+ERI+KY +CS SC++V Y+Y+DR + + P + S NV
Sbjct: 52 -----SAFNAVTKPSISIRSYMERIFKYADCSDSCYIVAYIYLDRFIQKQPLLPIDSSNV 106
Query: 126 HRLLVTSVMVASKTMDDVHYNNAFYARVGGVSNAELNRLELELLFLLDFGVMVSSRVFES 185
HRL++TSV+V++K MDD+ YNNAFYA+VGG++ E+N LEL+ LF + F + V+ +
Sbjct: 107 HRLIITSVLVSAKFMDDLCYNNAFYAKVGGITTEEMNLLELDFLFGIGFQLNVTISTYND 166
Query: 186 YCLHLEKEMLVNGTTSK-IEKAFI 208
YC L++EM++ S +E AF+
Sbjct: 167 YCSSLQREMVMRTMYSPLLEPAFL 190
>sp|Q9FKF6|CCU43_ARATH Cyclin-U4-3 OS=Arabidopsis thaliana GN=CYCU4-3 PE=1 SV=1
Length = 219
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 107/170 (62%), Gaps = 19/170 (11%)
Query: 25 PRVLTIIASVMEKLVARNDRLADSLSRQLTKGNGVFSGSTPIGTSLNTFHGVRAPNISIA 84
P VLT ++ +++++ ND L+ P ++F GV P+ISI
Sbjct: 23 PSVLTAMSYLLQRVSETNDNLSQK--------------QKP-----SSFTGVTKPSISIR 63
Query: 85 KYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVH 144
YLERI++Y NCS SC++V Y+Y+DR + + P + S NVHRL++TSV+V++K MDD+
Sbjct: 64 SYLERIFEYANCSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLS 123
Query: 145 YNNAFYARVGGVSNAELNRLELELLFLLDFGVMVSSRVFESYCLHLEKEM 194
YNN +YA+VGG+S E+N LEL+ LF + F + V+ F +YC L++EM
Sbjct: 124 YNNEYYAKVGGISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREM 173
>sp|Q7FAT5|CCP21_ORYSJ Cyclin-P2-1 OS=Oryza sativa subsp. japonica GN=CYCP2-1 PE=2 SV=1
Length = 217
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 110/178 (61%), Gaps = 17/178 (9%)
Query: 23 TTPRVLTIIASVMEKLVARNDR-LADSLSRQLTKGNGVFSGSTPIGTSLNTFHGVRAPNI 81
+TP V++++AS++E+ +ARN+R A + + + F T + SL+ F
Sbjct: 24 STPVVVSVLASLLERHIARNERDQAAAADGEAARRARAFDSGTVLDMSLHAF-------- 75
Query: 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSL-VVSLNVHRLLVTSVMVASKTM 140
LER +Y N SP +VV Y Y+DRL R D + VVS N RLL T+++VASK +
Sbjct: 76 -----LERFSRYANVSPQVYVVAYAYLDRL--RRGDGVRVVSANAQRLLTTAILVASKFV 128
Query: 141 DDVHYNNAFYARVGGVSNAELNRLELELLFLLDFGVMVSSRVFESYCLHLEKEMLVNG 198
+D +Y N+++A VGG++ AEL+ LEL+ LFL+ F + VS VF+SYC HLE+E+ G
Sbjct: 129 EDRNYKNSYFAAVGGLTAAELSSLELDFLFLMQFRLNVSVSVFQSYCRHLEREVSYGG 186
>sp|P40186|PCL7_YEAST PHO85 cyclin-7 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PCL7 PE=1 SV=3
Length = 285
Score = 97.1 bits (240), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 95/174 (54%), Gaps = 17/174 (9%)
Query: 24 TPRVLTIIASVMEKLVARNDRLADSLSRQLTKGNGVFSGSTPIGTSLNTFHGVRAPNISI 83
T ++ +I++++ +++ ND D +S+Q++ + T + F+G P I++
Sbjct: 107 TDELILMISALLNRIITANDETTD-VSQQVSD-----ETEDELLTPILAFYGKNVPEIAV 160
Query: 84 AKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDS-----------LVVSLNVHRLLVTS 132
+YLERI KY + F+ VY DR+ + S ++ S N+HRLL+T
Sbjct: 161 VQYLERIQKYCPTTNDIFLSLLVYFDRISKNYGHSSERNGCAKQLFVMDSGNIHRLLITG 220
Query: 133 VMVASKTMDDVHYNNAFYARVGGVSNAELNRLELELLFLLDFGVMVSSRVFESY 186
V + +K + D Y+N+ YA+VGG+S ELN LEL+ L L DF ++VS + Y
Sbjct: 221 VTICTKFLSDFFYSNSRYAKVGGISLQELNHLELQFLILCDFKLLVSVEEMQKY 274
>sp|Q06712|PREG_NEUCR Nuc-1 negative regulatory protein preg OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=preg PE=1 SV=1
Length = 483
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 15/160 (9%)
Query: 27 VLTIIASVMEKLVARNDRLADSLSRQLTKGNGVFSGSTPIGTSLNTFHGVRAPNISIAKY 86
++ +IA ++ +L+ ND A + ++ +L FH P IS+ Y
Sbjct: 275 LVVLIAHMLGELIELNDEAAQKVGQR---------------HNLTRFHSRTTPGISVLDY 319
Query: 87 LERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYN 146
L R+ K+ SP + YIDRL + D + +L VHR L+T+ VA+K + D
Sbjct: 320 LHRLAKHAYLSPPILLSMVYYIDRLCALYSDFTINTLTVHRFLITAATVAAKGLSDSFLT 379
Query: 147 NAFYARVGGVSNAELNRLELELLFLLDFGVMVSSRVFESY 186
N YARVGGV AELN LELE L +D+ ++ V +Y
Sbjct: 380 NTLYARVGGVRVAELNMLELEFLHRVDWKIVPDPDVLVAY 419
>sp|O42979|YGZA_SCHPO PHO85 cyclin-like protein C20F10.10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC20F10.10 PE=3 SV=1
Length = 243
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Query: 26 RVLTIIASVMEKLVARNDRLADSLSRQLTKGNGVFSGSTPIGTSLNTFHGVRAPNISIAK 85
++L +I+ + +L RL DS ++ T+ + + T + F P+ISI
Sbjct: 30 KLLEMISVFLSRLT----RLNDS-KQEATESDQIPLSPTSLKNPCLIFSAKNVPSISIQA 84
Query: 86 YLERIYKYTNCSPSCFVVGYVYIDRLLHR-HPDSLVVSLNVHRLLVTSVMVASKTMDDVH 144
YL RI KY + F+ +Y+DR++H H + S N+HR L+ ASK DV
Sbjct: 85 YLTRILKYCPATNDVFLSVLIYLDRIVHHFHFTVFINSFNIHRFLIAGFTAASKFFSDVF 144
Query: 145 YNNAFYARVGGVSNAELNRLELELLFLLDFGVMVSSRVFESY 186
Y N+ YA+VGG+ ELN LEL DF + +S ++Y
Sbjct: 145 YTNSRYAKVGGIPLHELNHLELSFFVFNDFNLFISLEDLQAY 186
>sp|P20052|PHO80_YEAST PHO85 cyclin PHO80 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PHO80 PE=1 SV=3
Length = 293
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 60/109 (55%)
Query: 69 SLNTFHGVRAPNISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRL 128
+L +H PNISI Y R+ K+++ + YID L +PD + SL HR
Sbjct: 63 TLTRYHSKIPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRF 122
Query: 129 LVTSVMVASKTMDDVHYNNAFYARVGGVSNAELNRLELELLFLLDFGVM 177
L+T+ VA+K + D NA YA+VGGV ELN LE + L +++ ++
Sbjct: 123 LLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNILENDFLKRVNYRII 171
>sp|P40038|PCL6_YEAST PHO85 cyclin-6 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PCL6 PE=1 SV=1
Length = 420
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 108 IDRLLHRHPDSLVV-SLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGVSNAELNRLEL 166
+ R HP V+ S N+HRL++ + V++K + D Y+N+ Y+RVGG+S ELN LEL
Sbjct: 319 VQRDSRAHPQMFVMDSHNIHRLIIAGITVSTKFLSDFFYSNSRYSRVGGISLQELNHLEL 378
Query: 167 ELLFLLDFGVMVSSRVFESYC 187
+ L L DF +++S + Y
Sbjct: 379 QFLVLCDFELLISVNELQRYA 399
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 17 PSQN--ETTTPRVLTIIASVMEKLVARNDRLA---DSLSRQLTKGN--GVFSGSTPIGTS 69
PS N E T ++L ++ +++ K++ NDR A SL++++ G + +
Sbjct: 160 PSLNIAEFPTDKLLKMLTALLTKIIKSNDRTAATNPSLTQEIENGRCLALSDNEKKYLSP 219
Query: 70 LNTFHGVRAPNISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHR 114
+ F G P I + +Y +RI KY + F+ VY DR+ R
Sbjct: 220 VLGFRGKHVPQIGLDQYFQRIQKYCPTTNDVFLSLLVYFDRISKR 264
>sp|P34624|YOJ1_CAEEL Uncharacterized cyclin-like protein ZK353.1 OS=Caenorhabditis
elegans GN=ZK353.1 PE=1 SV=3
Length = 357
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMD 141
+I +++ ++ + C ++ VYI+RLL+ L S N R+++ S+M+ASK D
Sbjct: 190 NIYRFVRNLFSSAQLTAECAIITLVYIERLLNYAEMDLCPS-NWRRVVLGSIMLASKVWD 248
Query: 142 DVHYNNAFYARVGGVSNA-ELNRLELELLFLLDFGVMVSSRVFESYCLHLEKEMLVNGTT 200
D N Y ++ +N ++N LE L LDF + V S V+ Y L L N
Sbjct: 249 DQAVWNVDYCQILRDTNVDDMNELERRFLECLDFNIEVPSSVYAKYYFDLRTLALANDLQ 308
Query: 201 SKIEKAF 207
I+ +
Sbjct: 309 LPIQPLY 315
>sp|P53124|PCL10_YEAST PHO85 cyclin-10 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PCL10 PE=1 SV=1
Length = 433
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 68/117 (58%), Gaps = 8/117 (6%)
Query: 73 FHGVRAPNISIAKYLERIYKYTNCSPSCFVVGYVYIDRL-LHRHPDS-LVVSLN-----V 125
F+ P +S A +L+RI P+ ++V ID L L R ++ L + LN V
Sbjct: 300 FYMKSKPTLSSADFLKRIQDKCEYQPTVYLVATFLIDTLFLTRDGNNILQLKLNLQEKEV 359
Query: 126 HRLLVTSVMVASKTMDDVHYNNAFYARVGGVSNAELNRLELELLF-LLDFGVMVSSR 181
HR+++ +V +++K ++D +++ ++++V G+S L +LE+ LL + + +MVS+R
Sbjct: 360 HRMIIAAVRLSTKLLEDFVHSHEYFSKVCGISKRLLTKLEVSLLICVCNTKLMVSNR 416
>sp|Q8K158|CNPD1_MOUSE Protein CNPPD1 OS=Mus musculus GN=Cnppd1 PE=2 SV=1
Length = 407
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 85 KYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTM-DDV 143
KY+ + + SP ++ VYI+RL HR+PD L ++ L + S+MVASK + D+
Sbjct: 80 KYVAHVSREACISPCAMMLALVYIERLRHRNPDYL-QHVSSSDLFLISMMVASKYLYDEG 138
Query: 144 HYNNAF---YARVGGVSNAELNRLELELLFLLDFGVMVSSR-VFE 184
F + GGV+ A LN LE L +D+ + R +FE
Sbjct: 139 EEEEVFNDEWGAAGGVAVATLNALERSFLSAMDWRLYTDPREIFE 183
>sp|Q8BGU5|CCNY_MOUSE Cyclin-Y OS=Mus musculus GN=Ccny PE=1 SV=1
Length = 341
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMD 141
I +++ ++ + C +V VY++RLL + + + N R+++ ++++ASK D
Sbjct: 170 QIYRFVRTLFSAAQLTAECAIVTLVYLERLL-TYAEIDICPANWKRIVLGAILLASKVWD 228
Query: 142 DVHYNNAFYARV-GGVSNAELNRLELELLFLLDFGVMVSSRVFESYCLHLEKEMLVNGTT 200
D N Y ++ ++ ++N LE + L LL F + V S V+ Y L N +
Sbjct: 229 DQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSLAEANNLS 288
Query: 201 SKIE 204
+E
Sbjct: 289 FPLE 292
>sp|Q5R4U5|CNPD1_PONAB Protein CNPPD1 OS=Pongo abelii GN=CNPPD1 PE=2 SV=1
Length = 410
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 85 KYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTM-DDV 143
KY+ + + SP ++ VYI+RL HR+PD L ++ L + S+MVASK + D+
Sbjct: 80 KYVAHVSREACISPCAMMLALVYIERLRHRNPDYL-QHVSSSDLFLISMMVASKYLYDEG 138
Query: 144 HYNNAF---YARVGGVSNAELNRLELELLFLLDFGVMVSSR-VFE 184
F + GGV+ LN LE L +D+ + R +FE
Sbjct: 139 EEEEVFNDEWGAAGGVAVPTLNALERGFLSAMDWHLYTDPREIFE 183
>sp|Q8ND76|CCNY_HUMAN Cyclin-Y OS=Homo sapiens GN=CCNY PE=1 SV=2
Length = 341
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMD 141
I +++ ++ + C +V VY++RLL + + + N R+++ ++++ASK D
Sbjct: 170 QIYRFVRTLFSAAQLTAECAIVTLVYLERLL-TYAEIDICPANWKRIVLGAILLASKVWD 228
Query: 142 DVHYNNAFYARV-GGVSNAELNRLELELLFLLDFGVMVSSRVFESYCLHLEKEMLVNGTT 200
D N Y ++ ++ ++N LE + L LL F + V S V+ Y L N +
Sbjct: 229 DQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSLAEANNLS 288
Query: 201 SKIE 204
+E
Sbjct: 289 FPLE 292
>sp|Q6P7B2|CNPD1_RAT Protein CNPPD1 OS=Rattus norvegicus GN=Cnppd1 PE=2 SV=1
Length = 408
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 85 KYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTM-DDV 143
KY+ + + SP ++ VYI+RL HR+PD L ++ L + S+MVASK + D+
Sbjct: 80 KYVAHVSREACISPCAMMLALVYIERLRHRNPDYL-QHVSSSDLFLISMMVASKYLYDEG 138
Query: 144 HYNNAF---YARVGGVSNAELNRLELELLFLLDFGVMVSSR-VFE 184
F + GGV+ LN LE L +D+ + R +FE
Sbjct: 139 EEEEVFNDEWGAAGGVAVPTLNALERSFLSAMDWRLYTDPREIFE 183
>sp|Q9BV87|CNPD1_HUMAN Protein CNPPD1 OS=Homo sapiens GN=CNPPD1 PE=2 SV=2
Length = 410
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 85 KYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTM-DDV 143
KY+ + + SP ++ VYI+RL HR+PD L ++ L + S+MVASK + D+
Sbjct: 80 KYVAHVSREACISPCAMMLALVYIERLRHRNPDYL-QHVSSSDLFLISMMVASKYLYDEG 138
Query: 144 HYNNAF---YARVGGVSNAELNRLELELLFLLDFGVMVSSR-VFE 184
F + GGV+ LN LE L +D+ + R +FE
Sbjct: 139 EEEEVFNDEWGAAGGVAVPTLNALERGFLSAMDWHLYTDPREIFE 183
>sp|Q5E9J2|CNPD1_BOVIN Protein CNPPD1 OS=Bos taurus GN=CNPPD1 PE=2 SV=1
Length = 411
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 85 KYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTM-DDV 143
KY+ + + SP ++ VYI+RL HR+PD L ++ L + S+MVASK + D+
Sbjct: 80 KYVAHVSREACISPCAMMLALVYIERLRHRNPDYL-QHVSSSDLFLISMMVASKYLYDEG 138
Query: 144 HYNNAF---YARVGGVSNAELNRLELELLFLLDFGVMVSSR-VFE 184
F + GGV+ LN LE L +D+ + R +FE
Sbjct: 139 EEEEVFNDEWGAAGGVAVPTLNALERGFLSAMDWRLYTDPREIFE 183
>sp|Q8N7R7|CCYL1_HUMAN Cyclin-Y-like protein 1 OS=Homo sapiens GN=CCNYL1 PE=1 SV=2
Length = 359
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 83 IAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDD 142
I +++ ++ + C +V VY++RLL + + + N R+++ ++++ASK DD
Sbjct: 191 IYRFVRTLFSAAQLTAECAIVTLVYLERLL-TYAEIDICPTNWKRIVLGAILLASKVWDD 249
Query: 143 VHYNNAFYARV-GGVSNAELNRLELELLFLLDFGVMVSSRVFESYCLHL 190
N Y ++ ++ ++N +E L LL F + V + V+ Y L
Sbjct: 250 QAVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAKYYFDL 298
>sp|Q5ZJH7|CNPD1_CHICK Protein CNPPD1 OS=Gallus gallus GN=CNPPD1 PE=2 SV=1
Length = 439
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 85 KYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTM-DDV 143
KY+ + + SP ++ VYI+RL HR+P+ L ++ L + S+MVASK + D+
Sbjct: 78 KYVSHVSREACISPCSMMLALVYIERLRHRNPEYL-QQISSSDLFLISMMVASKYLYDEG 136
Query: 144 HYNNAF---YARVGGVSNAELNRLELELLFLLDFGVMVSSR-VFE 184
F + G V +N LE+ L +D+ + R +FE
Sbjct: 137 EEEEVFNDEWGAAGKVDVQTMNTLEMNFLSAIDWSLYTDPRELFE 181
>sp|Q28EL0|CCYL1_XENTR Cyclin-Y-like protein 1 OS=Xenopus tropicalis GN=ccnyl1 PE=2 SV=1
Length = 343
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 83 IAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDD 142
I +++ ++ + C +V VY++RLL + + + N R+++ ++++ASK DD
Sbjct: 173 IYRFVRTLFSAAQLTAECAIVTLVYLERLL-TYAEIDICPSNWKRIVLGAILLASKVWDD 231
Query: 143 VHYNNAFYARV-GGVSNAELNRLELELLFLLDFGVMVSSRVFESYCLHL 190
N Y ++ ++ ++N +E L LL F + V + V+ Y L
Sbjct: 232 QAVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAKYYFDL 280
>sp|Q6NRF4|CCY1B_XENLA Cyclin-Y-like protein 1-B OS=Xenopus laevis GN=ccnyl1-b PE=2 SV=1
Length = 343
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 83 IAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDD 142
I +++ ++ + C +V VY++RLL + + + N R+++ ++++ASK DD
Sbjct: 173 IYRFVRTLFSAAQLTAECAIVTLVYLERLL-TYAEIDICPSNWKRIVLGAILLASKVWDD 231
Query: 143 VHYNNAFYARV-GGVSNAELNRLELELLFLLDFGVMVSSRVFESYCLHL 190
N Y ++ ++ ++N +E L LL F + V + V+ Y L
Sbjct: 232 QAVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAKYYFDL 280
>sp|Q08CI4|CCYL1_DANRE Cyclin-Y-like protein 1 OS=Danio rerio GN=ccnyl1 PE=2 SV=1
Length = 339
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 83 IAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDD 142
I +++ ++ + C +V VY++RLL + + + N R+++ ++++ASK DD
Sbjct: 169 IYRFVRTLFSAAQLTAECAIVTLVYLERLL-TYAELDICPSNWKRIVLGAILLASKVWDD 227
Query: 143 VHYNNAFYARV-GGVSNAELNRLELELLFLLDFGVMVSSRVFESYCLHL 190
N Y ++ ++ ++N +E L LL F + V + V+ Y L
Sbjct: 228 QAVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAKYYFDL 276
>sp|Q5U5D0|CCY1A_XENLA Cyclin-Y-like protein 1-A OS=Xenopus laevis GN=ccnyl1-a PE=2 SV=1
Length = 339
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Query: 83 IAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDD 142
I +++ ++ + C +V VY++RLL + + + N ++++ +++++SK DD
Sbjct: 169 IYRFVRTLFSAAQLTAECAIVTLVYLERLL-TYAEIDICPSNWKQIVLGAILLSSKVWDD 227
Query: 143 VHYNNAFYARV-GGVSNAELNRLELELLFLLDFGVMVSSRVFESYC-----------LHL 190
N Y ++ ++ ++N +E L LL F + V++ V+ Y LH
Sbjct: 228 QAVWNVDYCQIMKDITVEDMNEMERHFLELLQFNINVTASVYAKYYFDLRSLADDNNLHF 287
Query: 191 EKEMLVNGTTSKIE 204
E L N K+E
Sbjct: 288 LLEPLSNERAQKLE 301
>sp|Q4R871|CCYL2_MACFA Cyclin-Y-like protein 2 OS=Macaca fascicularis GN=CCNYL2 PE=2 SV=1
Length = 360
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 83 IAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDD 142
I +++ ++K + +V +YI+RL+ + D + N R+++ ++++ASK D
Sbjct: 192 IFRFVRTLFKAIRLTAEFAIVSLIYIERLV-SYADIDICPTNWKRIVLGAILLASKVWSD 250
Query: 143 VHYNNAFYARV-GGVSNAELNRLELELLFLLDFGVMVSSRVFESYCLHLEKEMLVNGTTS 201
+ N Y ++ ++ E+N LE + L L+++ + V+ V+ + L NG S
Sbjct: 251 MAVWNEDYCKLFENITVEEMNELERQFLKLINYNIGVTGSVYSRFYFDLRSLAHDNGLYS 310
Query: 202 KI 203
+
Sbjct: 311 PV 312
>sp|P25693|PCL2_YEAST PHO85 cyclin-2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PCL2 PE=1 SV=2
Length = 308
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 71 NTFHGVRAPNISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLV-VSLNVHRLL 129
N+ + P + K++ R+ K++N + VY+ +L P ++ + HR+
Sbjct: 37 NSMIDIALPAPPLTKFINRLIKHSNVQTPTLMATSVYLAKLRSIIPSNVYGIETTRHRIF 96
Query: 130 VTSVMVASKTMDDVHYNNAFYARV--GGVSNAELNRLELELLFLLDFGVMVSS 180
+ +++A+KT++D N +A G + E+N +E ELL D+ V +S+
Sbjct: 97 LGCLILAAKTLNDSSPLNKHWAEYTDGLLILREVNTIERELLEYFDWDVTIST 149
>sp|Q5T2Q4|CCYL2_HUMAN Cyclin-Y-like protein 2 OS=Homo sapiens GN=CCNYL2 PE=2 SV=2
Length = 361
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 83 IAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDD 142
I +++ ++K + +V +YI+RL+ + D + N R+++ ++++ASK D
Sbjct: 193 IFRFVRTLFKAMRLTAEFAIVSLIYIERLV-SYADIDICPTNWKRIVLGAILLASKVWSD 251
Query: 143 VHYNNAFYARV-GGVSNAELNRLELELLFLLDFGVMVSSRVFESYCLHLEKEMLVNGTTS 201
+ N Y ++ ++ E+N LE + L L+++ +++ V+ + L NG S
Sbjct: 252 MAVWNEDYCKLFKNITVEEMNELERQFLKLINYNNSITNSVYSRFYFDLRTLAHNNGLYS 311
Query: 202 KI 203
+
Sbjct: 312 PV 313
>sp|Q08966|PCL8_YEAST PHO85 cyclin-8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PCL8 PE=1 SV=1
Length = 492
Score = 38.5 bits (88), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 70/151 (46%), Gaps = 10/151 (6%)
Query: 49 LSRQLTKGNGVFSGSTPIGTSLNTFHGVRAPNISIAKYLERIYKYTNCSP-----SCFVV 103
LS+++ + S+ F P++S +++RI + +++
Sbjct: 332 LSKKINDNANTLAISSEDPQKFVNFVMKNPPSLSFRDFIDRIQNKCMFGAVVYLGATYLL 391
Query: 104 GYVYIDRLLHRHPDSLVVSLN---VHRLLVTSVMVASKTMDDVHYNNAFYARVGGVSNAE 160
V++ R P L L HR++++++ +A+K ++D ++ + +V G+S
Sbjct: 392 QLVFLTRDEMDGPIKLKAKLQEDQAHRIIISTIRIATKLLEDFVHSQNYICKVFGISKRL 451
Query: 161 LNRLELELLFLLDF-GVMVSSRVFESYCLHL 190
L +LE+ + ++F G+M++ E LH+
Sbjct: 452 LTKLEISFMASVNFDGLMITCEKLEK-TLHI 481
>sp|Q7N6B9|MUKF_PHOLL Chromosome partition protein MukF OS=Photorhabdus luminescens
subsp. laumondii (strain TT01) GN=mukF PE=3 SV=1
Length = 440
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 33/177 (18%)
Query: 10 YQGRLPEPSQNETTTPRVLTIIASVMEKLVARNDRLADSLSRQLTKGNGVFSGSTPIGTS 69
+ RL + Q+ P LTI A +RL D +LT N +G P+
Sbjct: 297 FSQRLRQSVQHYFDNPWTLTI---------ANAERLLDMRDEELTLRNEEVTGELPLALE 347
Query: 70 LNTFHGVRAPNISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLL 129
F + N +A+ +E+ +G V D L +HP L +V R+L
Sbjct: 348 YEEFSEI---NEQLAEMIEKALLIYRQEQRPLDLGAVLRD-YLAQHP--LSRHFDVARIL 401
Query: 130 VTSVMVASKTMDDVHYNNAFYARVGGVSNAELNRLELELLFLLDFGVMVSSRVFESY 186
V + R+G V+ A+ + L E L + D+G V + V ++Y
Sbjct: 402 VDQAV-----------------RLG-VAEADFSGLPAEWLAINDYGAKVQAHVIDTY 440
>sp|P0C7X3|CCYL3_HUMAN Putative cyclin-Y-like protein 3 OS=Homo sapiens GN=CCNYL3 PE=2
SV=1
Length = 344
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 36/173 (20%)
Query: 83 IAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDD 142
I ++ +++ + C +V VYI RLL L + N ++++ ++++ASK
Sbjct: 76 IFRHFCTLFQVIKLTAPCAIVALVYIKRLLTSANIDLCPT-NWKKIVLGTMLLASK---- 130
Query: 143 VHYNNAFYARVGGVSNAE------LNRLELELLFLLDFGVMVSSRVFESY----C----- 187
V N+ ++ V N++ ++++E L LL+F + VS+ V+ Y C
Sbjct: 131 VWRNHGLWS-VDDSQNSKDTAVENMSKMEKCFLELLEFNIHVSASVYAKYYFDLCALAND 189
Query: 188 ---------LHLEKEMLVNGTTSKIEKAFISNPVDDVTEISAENTASCSPLLS 231
LH +K + G TS + + P + EN A+ SPL S
Sbjct: 190 HDLYFLFSFLHKDKAQKLEGHTS--QHSLSLGPC----RVGMENYATYSPLSS 236
>sp|Q925J9|MED1_MOUSE Mediator of RNA polymerase II transcription subunit 1 OS=Mus
musculus GN=Med1 PE=1 SV=2
Length = 1575
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 21 ETTTPRVLTIIASVMEKLVARNDRLADSLSRQLTKGNGVFSGSTPIGTSLNTFHG 75
+ TP L++IA +E +V +N A S +T GN SG+T T NTF G
Sbjct: 519 QADTP-ALSLIAETVEDMVKKNLPPASSPGYGMTTGNNPMSGTT---TPTNTFPG 569
>sp|Q15648|MED1_HUMAN Mediator of RNA polymerase II transcription subunit 1 OS=Homo
sapiens GN=MED1 PE=1 SV=4
Length = 1581
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 21 ETTTPRVLTIIASVMEKLVARNDRLADSLSRQLTKGNGVFSGSTPIGTSLNTFHG 75
+ TP L++IA +E +V +N A S +T GN SG+T T NTF G
Sbjct: 519 QADTP-ALSLIAETVEDMVKKNLPPASSPGYGMTTGNNPMSGTT---TPTNTFPG 569
>sp|Q8CDL9|CCD87_MOUSE Coiled-coil domain-containing protein 87 OS=Mus musculus GN=Ccdc87
PE=2 SV=2
Length = 855
Score = 30.8 bits (68), Expect = 8.3, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 110 RLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGV 156
R++ HP + V+L VH ++ V VA+ + + ++N++F+ GV
Sbjct: 421 RIIPLHPQPVTVALKVHDQVI--VQVATVQLSERYFNDSFHVEGAGV 465
>sp|Q80WQ2|VAC14_MOUSE Protein VAC14 homolog OS=Mus musculus GN=Vac14 PE=1 SV=1
Length = 782
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 23/122 (18%)
Query: 13 RLPEPSQNETTTPRVLTIIASVMEKLVARNDRLADSLSRQL-TKGNGVFSGSTPIGTSLN 71
+L P +E P+ SV +K N DSL +Q T G S + G+ +N
Sbjct: 330 KLVTPEDDEPDEPK------SVAQKQTEPNPE--DSLPKQEGTASGGPGSCDSSFGSGIN 381
Query: 72 TFHGVRAPNISIAKYLERIYKYTNCSPSCFVVG--------------YVYIDRLLHRHPD 117
F + +L+ I + NC S +G Y+ R + RH D
Sbjct: 382 VFTSANTDRAPVTLHLDGIVQVLNCHLSDTTIGMMTRIAVLKWLYHLYIKTPRKMFRHTD 441
Query: 118 SL 119
SL
Sbjct: 442 SL 443
>sp|Q1QXV0|QUEF_CHRSD NADPH-dependent 7-cyano-7-deazaguanine reductase
OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC
BAA-138 / NCIMB 13768) GN=queF PE=3 SV=1
Length = 277
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
Query: 22 TTTPRVLTIIASVMEKLVARNDRLADSLSRQLTKGNGVFSGSTPIGTSLNTFHGVRAPNI 81
T TP +L + ++E ++L L K N +G G+ L + G R
Sbjct: 158 TPTPGLLEVGEEIVE----------ETLHSHLLKSNCPVTGQPDWGSVLIRYRGPRLERD 207
Query: 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVV 121
++ KYL ++ + C V ++++D + P+ L+V
Sbjct: 208 ALLKYLISYRQHQDFHEHC--VEHLFVDLMARARPERLLV 245
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,169,428
Number of Sequences: 539616
Number of extensions: 2995451
Number of successful extensions: 7207
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 7158
Number of HSP's gapped (non-prelim): 45
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)