Query 026696
Match_columns 235
No_of_seqs 193 out of 900
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 11:26:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08613 Cyclin: Cyclin; Inte 100.0 2.7E-36 6E-41 248.4 10.9 147 25-176 1-149 (149)
2 KOG1674 Cyclin [General functi 100.0 1.4E-30 3E-35 227.2 13.7 169 17-198 25-200 (218)
3 KOG1675 Predicted cyclin [Gene 99.8 7.8E-20 1.7E-24 164.6 4.2 145 77-222 187-337 (343)
4 PF00134 Cyclin_N: Cyclin, N-t 99.3 6E-12 1.3E-16 98.6 7.2 93 82-177 33-127 (127)
5 cd00043 CYCLIN Cyclin box fold 98.7 4.9E-08 1.1E-12 70.0 8.0 84 82-169 4-88 (88)
6 smart00385 CYCLIN domain prese 98.5 4.6E-07 1E-11 64.3 7.3 82 85-170 1-83 (83)
7 KOG0656 G1/S-specific cyclin D 98.0 3.9E-05 8.5E-10 71.2 9.7 108 81-188 79-190 (335)
8 TIGR00569 ccl1 cyclin ccl1. Un 97.6 0.00037 8E-09 64.1 8.7 105 83-191 59-171 (305)
9 KOG0653 Cyclin B and related k 97.5 0.00048 1E-08 65.2 8.5 96 82-181 160-259 (391)
10 KOG0655 G1/S-specific cyclin E 97.0 0.0023 5E-08 59.5 7.0 102 74-177 137-242 (408)
11 COG5333 CCL1 Cdk activating ki 96.9 0.0029 6.2E-08 57.9 7.2 92 85-179 50-148 (297)
12 KOG4164 Cyclin ik3-1/CABLES [C 96.6 0.0028 6.1E-08 60.0 5.0 109 82-193 384-496 (497)
13 COG5024 Cyclin [Cell division 96.3 0.0076 1.6E-07 58.1 5.7 96 82-181 215-313 (440)
14 PRK00423 tfb transcription ini 93.5 0.62 1.3E-05 42.8 9.6 103 84-190 126-230 (310)
15 KOG0794 CDK8 kinase-activating 91.5 0.25 5.5E-06 44.1 4.1 96 81-179 42-151 (264)
16 KOG0834 CDK9 kinase-activating 91.5 0.95 2E-05 42.2 8.1 108 82-193 41-165 (323)
17 KOG0835 Cyclin L [General func 90.8 2 4.4E-05 40.2 9.5 102 86-190 29-152 (367)
18 KOG1674 Cyclin [General functi 90.6 0.11 2.4E-06 45.6 1.1 96 100-195 3-108 (218)
19 KOG2496 Cdk activating kinase 89.7 1 2.2E-05 41.7 6.5 95 95-193 73-173 (325)
20 PRK00423 tfb transcription ini 86.1 4.9 0.00011 36.9 8.8 95 77-175 213-307 (310)
21 PF00382 TFIIB: Transcription 80.9 7.4 0.00016 27.5 6.2 71 87-161 1-71 (71)
22 COG1405 SUA7 Transcription ini 66.8 59 0.0013 29.8 9.8 108 79-190 96-205 (285)
23 PF02984 Cyclin_C: Cyclin, C-t 66.5 11 0.00024 28.1 4.3 87 82-171 2-88 (118)
24 COG1405 SUA7 Transcription ini 56.3 50 0.0011 30.2 7.4 83 77-163 188-270 (285)
25 PF03914 CBF: CBF/Mak21 family 44.9 55 0.0012 26.8 5.3 44 73-116 54-98 (164)
26 KOG3956 Alpha 2-macroglobulin 41.7 47 0.001 30.7 4.7 63 147-220 158-222 (359)
27 PF11357 Spy1: Cell cycle regu 40.3 1.4E+02 0.003 24.5 6.7 95 83-185 15-116 (131)
28 PF12921 ATP13: Mitochondrial 39.7 67 0.0015 25.6 4.9 55 84-140 52-106 (126)
29 PHA02054 hypothetical protein 35.6 1.6E+02 0.0035 22.3 5.9 46 71-116 36-85 (94)
30 PF04219 DUF413: Protein of un 34.2 45 0.00097 25.7 2.9 29 138-167 1-29 (93)
31 KOG0654 G2/Mitotic-specific cy 29.0 29 0.00063 33.0 1.3 97 82-181 139-237 (359)
No 1
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=100.00 E-value=2.7e-36 Score=248.36 Aligned_cols=147 Identities=39% Similarity=0.689 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHHHHHHHhcchhhhhhhhhhcCCCccCCCCCCCCccccccCCCCCchhHHHHHHHHHHHcCCChhhHHHH
Q 026696 25 PRVLTIIASVMEKLVARNDRLADSLSRQLTKGNGVFSGSTPIGTSLNTFHGVRAPNISIAKYLERIYKYTNCSPSCFVVG 104 (235)
Q Consensus 25 p~~l~~la~~Le~~~~~nd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~P~isi~~yl~rI~~~~~~s~~~~v~A 104 (235)
++++.+|+.+++++++.|+......++... ...........+.|++..+|+++|.+|+.||+++++|+++|+++|
T Consensus 1 ~~~~~~i~~~l~~~~~~n~~~~~~s~~~~~-----~~~~~~~~~~~~~F~~~~~p~i~i~~fl~ri~~~~~~s~~~~i~a 75 (149)
T PF08613_consen 1 DKLVQSIARQLDRLINNNESTAQSSSSSSS-----PSSPFQQSPKISQFHSQSVPSISIRDFLSRILKYTQCSPECLILA 75 (149)
T ss_dssp -HHHHHHHHHHHHHHHHHH-------------------T---------T--SS--SS-HHHHHHHHHHHTT--HHHHHHH
T ss_pred ChHHHHHHHHHHHHhccCchhhhhcccccc-----cccccccccccccccCCCCCCCcHHHHHHHHHHHcCCChHHHHHH
Confidence 368999999999999999997754322110 001112346788999999999999999999999999999999999
Q ss_pred HHHHHHHHh--hCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCCCHHHHHHHHHHHHHhCCCce
Q 026696 105 YVYIDRLLH--RHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGVSNAELNRLELELLFLLDFGV 176 (235)
Q Consensus 105 LiYldRl~~--~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGis~~ELN~LE~~FL~lLdf~L 176 (235)
++||+|+.. ..+.+.+++.|+|||+++|+|||+||+||.+|+|++||+|||++++|||+||++||.+|||+|
T Consensus 76 liYl~Rl~~~~~~~~~~~~~~~~~Rl~l~alilA~K~~~D~~~~n~~~a~v~gis~~eln~lE~~fL~~l~~~L 149 (149)
T PF08613_consen 76 LIYLDRLRQRSRKPNIPLNSSNIHRLFLTALILASKFLDDNTYSNKSWAKVGGISLKELNELEREFLKLLDYNL 149 (149)
T ss_dssp HHHHHHHHH--H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHTS-HHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHhhcccccccccchhHHHHHHHHHHHHhhcccccccHHHHHhhcCCCHHHHHHHHHHHHHHCCCcC
Confidence 999999999 568899999999999999999999999999999999999999999999999999999999997
No 2
>KOG1674 consensus Cyclin [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=227.21 Aligned_cols=169 Identities=47% Similarity=0.828 Sum_probs=154.1
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHhcchhhhhhhhhhcCCCccCCCCCCCCccccccCCCCCchhHHHHHHHHHHHcCC
Q 026696 17 PSQNETTTPRVLTIIASVMEKLVARNDRLADSLSRQLTKGNGVFSGSTPIGTSLNTFHGVRAPNISIAKYLERIYKYTNC 96 (235)
Q Consensus 17 ~~~~~~~~p~~l~~la~~Le~~~~~nd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~P~isi~~yl~rI~~~~~~ 96 (235)
.+......|.++..+..+++++.+.|+....+ + ...+...++.|++...|+|+|.+|++||.+|++|
T Consensus 25 ~~~~ss~~p~~l~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~f~~~~~p~isi~~yleri~k~~~~ 91 (218)
T KOG1674|consen 25 TGRNSSITPIFLTCLSSLLKRLNDSNENLSRE--N-----------NKSWASPTTGFDGVSTPNISIRQYLERIFKYSKC 91 (218)
T ss_pred ccccccccchHHHHHHHHHHHHHhcChhhhcc--c-----------ccccccccccccCCCCCCcchHHHHHHHHHHhcC
Confidence 45556778999999999999999999976542 0 1124567899999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhh------CCCcccccch-hHHHHHHHHHhhcccccCCCccccccccccCCCHHHHHHHHHHHH
Q 026696 97 SPSCFVVGYVYIDRLLHR------HPDSLVVSLN-VHRLLVTSVMVASKTMDDVHYNNAFYARVGGVSNAELNRLELELL 169 (235)
Q Consensus 97 s~~~~v~ALiYldRl~~~------~~~~~l~~~n-~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGis~~ELN~LE~~FL 169 (235)
+++|+++|++||||+.+. .|...+++.| +||++++++++|+||++|.+|+|++||++||++.+|||.||++||
T Consensus 92 s~~~lv~al~Yldr~~~~~~~~~~~~~~~i~s~n~vhR~lit~v~vs~kf~~d~~y~n~~~a~vggl~~~eln~lE~~~l 171 (218)
T KOG1674|consen 92 SPECLVLALVYLDRFVKQPQARSVKPQSLINSLNKVHRLLITTVTVSTKFLDDVYYSNAYYAKVGGLTTDELNKLELDLL 171 (218)
T ss_pred CchhhhhhhhhhhhhhhhhcccccCcccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHhCCCChHhhhhhhHHHH
Confidence 999999999999999997 6888999999 999999999999999999999999999999999999999999999
Q ss_pred HhCCCceeeCHHHHHHHHHHHHHHHhhcC
Q 026696 170 FLLDFGVMVSSRVFESYCLHLEKEMLVNG 198 (235)
Q Consensus 170 ~lLdf~L~Vs~~e~~~y~~~L~~~~~~~~ 198 (235)
..+||+|.|+.++|+.|+..+++.+..++
T Consensus 172 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~ 200 (218)
T KOG1674|consen 172 FLLDFRLIISRSEFNLYEDLLEREENLNK 200 (218)
T ss_pred hhCCeEEEechhHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999987654
No 3
>KOG1675 consensus Predicted cyclin [General function prediction only]
Probab=99.78 E-value=7.8e-20 Score=164.62 Aligned_cols=145 Identities=22% Similarity=0.310 Sum_probs=131.9
Q ss_pred CCCchhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCcccccccccc-C
Q 026696 77 RAPNISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVG-G 155 (235)
Q Consensus 77 ~~P~isi~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~Vg-G 155 (235)
..|..-+..|+.-.+.+.+++.+|-++.|+|++|+... .+..+++.||+|..+.++++|+|.|+|..++|-.|+++. .
T Consensus 187 ~~~~~ri~k~v~~l~~~~qlta~~aiitL~~~erl~~~-~e~~~~p~~w~r~~~g~il~sskv~~dqs~wnvdycqIlKd 265 (343)
T KOG1675|consen 187 HPGLVRIKKFVRILFSWAQLTAECDIITLVYAERLLWL-AERDPCPRNWSRAVLGEILLSSKVYDDQSVWNVDYCEILKD 265 (343)
T ss_pred CcchhheehhhhhHhhhhhhhhccchHHHHhhHhhhhH-hhcCCCcchhhhhhhhhheehhhhhhhhhcccHHHHHHHhh
Confidence 34556789999999999999999999999999999985 466688999999999999999999999999999999985 6
Q ss_pred CCHHHHHHHHHHHHHhCCCceeeCHHHHHHHHHHHHHHHhhc-----CCccccccccCCCCcchhhhccccc
Q 026696 156 VSNAELNRLELELLFLLDFGVMVSSRVFESYCLHLEKEMLVN-----GTTSKIEKAFISNPVDDVTEISAEN 222 (235)
Q Consensus 156 is~~ELN~LE~~FL~lLdf~L~Vs~~e~~~y~~~L~~~~~~~-----~~~~~~e~~~~~~~~~~~~~~~~~~ 222 (235)
+++.+||.|||+||.+|+||+.|...+|.+||..|...+..+ -++.+-||+++.++|++.||+|+..
T Consensus 266 ~tveDmNe~ERqfLelLqfNinvp~svYAKyYfdlr~Lae~n~L~f~~ePlsKeRaqkleA~sr~~EDkd~~ 337 (343)
T KOG1675|consen 266 QSVDDMNALERQFLELLQFNINVPSSEYAKYYFDLRCLAEANPLLFPCEPLSKERAQKLEAMGRDAEDKDRK 337 (343)
T ss_pred ccHhhHHHHHHHHHHHHhhccCccHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHhhhhccchHh
Confidence 999999999999999999999999999999999999886544 4677789999999999999999853
No 4
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=99.30 E-value=6e-12 Score=98.62 Aligned_cols=93 Identities=19% Similarity=0.320 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCcccccccccc--CCCHH
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVG--GVSNA 159 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~Vg--Gis~~ 159 (235)
.+.+|+..+....++++.++..|+.|+||+....+ +...+.+.+.++|+++|+|+.++...+...|..++ .++.+
T Consensus 33 ~~~~~i~~~~~~~~l~~~~~~~A~~~~dr~~~~~~---~~~~~~~li~~~cl~lA~K~~e~~~~~~~~~~~~~~~~~~~~ 109 (127)
T PF00134_consen 33 IIIDWIIELCQRLKLSPETLHLAIYLFDRFLSKRP---VNRSKLQLIALACLFLASKMEEDNPPSISDLIRISDNTFTKK 109 (127)
T ss_dssp HHHHHHHHHHHHTT-BHHHHHHHHHHHHHHHTTS----TTCCGHHHHHHHHHHHHHHHHTSS--HHHHHHHHTTTSSHHH
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhcc---cccchhhhhhhhHHHHhhhhhccccchHHHHHHHHcCCCCHH
Confidence 58899999999999999999999999999998753 67889999999999999999999888888888775 48999
Q ss_pred HHHHHHHHHHHhCCCcee
Q 026696 160 ELNRLELELLFLLDFGVM 177 (235)
Q Consensus 160 ELN~LE~~FL~lLdf~L~ 177 (235)
++..||+.+|..|+|+|+
T Consensus 110 ~i~~~E~~iL~~L~f~ln 127 (127)
T PF00134_consen 110 DILEMEREILSALNFDLN 127 (127)
T ss_dssp HHHHHHHHHHHHTTT---
T ss_pred HHHHHHHHHHHHCCCCcC
Confidence 999999999999999985
No 5
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=98.75 E-value=4.9e-08 Score=70.04 Aligned_cols=84 Identities=21% Similarity=0.235 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCC-CHHH
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGV-SNAE 160 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGi-s~~E 160 (235)
...+|+.++.+..++++++...|..|+||+...++ +...+.+.+.++|+.+|+|+.++ ..+++.+.+++|. +.++
T Consensus 4 ~~~~~l~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~ia~a~l~lA~k~~~~-~~~~~~~~~~~~~~~~~~ 79 (88)
T cd00043 4 TPLDFLRRVAKALGLSPETLTLAVNLLDRFLLDYS---VLGRSPSLVAAAALYLAAKVEEI-PPWLKDLVHVTGYATEEE 79 (88)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc---cccCChHHHHHHHHHHHHHHcCC-CCCHHHHhHHhCCCCHHH
Confidence 47899999999999999999999999999998643 34789999999999999999888 8889999999999 9999
Q ss_pred HHHHHHHHH
Q 026696 161 LNRLELELL 169 (235)
Q Consensus 161 LN~LE~~FL 169 (235)
+..+|.++|
T Consensus 80 i~~~e~~il 88 (88)
T cd00043 80 ILRMEKLLL 88 (88)
T ss_pred HHHHHHHhC
Confidence 999999875
No 6
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=98.51 E-value=4.6e-07 Score=64.32 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCC-CHHHHHH
Q 026696 85 KYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGV-SNAELNR 163 (235)
Q Consensus 85 ~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGi-s~~ELN~ 163 (235)
+|+.|+.+..++++++.-.|..++||+...+. +...+.+.+.++|+.+|+|+.+.. .+++.+..+.|+ +.+++..
T Consensus 1 ~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~~---~~~~~~~~ia~a~l~lA~k~~~~~-~~~~~~~~~~~~~~~~~i~~ 76 (83)
T smart00385 1 DFLRRVCKALNLDPETLNLAVNLLDRFLSDYK---FLKYSPSLIAAAALYLAAKTEEIP-PWTKELVHYTGYFTEEEILR 76 (83)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh---cccCCHHHHHHHHHHHHHHHhcCC-CCchhHhHhhCCCCHHHHHH
Confidence 48999999999999999999999999988532 234889999999999999999876 578888888888 9999999
Q ss_pred HHHHHHH
Q 026696 164 LELELLF 170 (235)
Q Consensus 164 LE~~FL~ 170 (235)
+|+++|.
T Consensus 77 ~~~~il~ 83 (83)
T smart00385 77 MEKLLLE 83 (83)
T ss_pred HHHHHhC
Confidence 9999873
No 7
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=3.9e-05 Score=71.19 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCcccccccccc---CCC
Q 026696 81 ISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVG---GVS 157 (235)
Q Consensus 81 isi~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~Vg---Gis 157 (235)
..-.++|.++.++-+|++.|+.+|.=|+|||....+--.-.++-..-|-.+|+-||+|+=+-..---..+--.+ -+.
T Consensus 79 ~~A~~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~k~W~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~fe 158 (335)
T KOG0656|consen 79 KQALDWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKDKPWMLQLLAVACLSLASKMEETDVPLLADLQVEYTDNVFE 158 (335)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHhhcCcCCchhhhhhhcccccccc
Confidence 35778999999999999999999999999999864322334566788889999999998775422112222112 268
Q ss_pred HHHHHHHHHHHHHhCCCcee-eCHHHHHHHHH
Q 026696 158 NAELNRLELELLFLLDFGVM-VSSRVFESYCL 188 (235)
Q Consensus 158 ~~ELN~LE~~FL~lLdf~L~-Vs~~e~~~y~~ 188 (235)
.+.+.+||+-.|..|+|++. |++-.|-+|.-
T Consensus 159 aktI~rmELLVLstL~Wrl~aVTP~sF~~~fl 190 (335)
T KOG0656|consen 159 AKTIQRMELLVLSTLKWRLRAVTPFSFIDHFL 190 (335)
T ss_pred HHHHHHHHHHHHhhccccccCCCchHHHHHHH
Confidence 99999999999999999998 79998877753
No 8
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=97.55 E-value=0.00037 Score=64.11 Aligned_cols=105 Identities=16% Similarity=0.243 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcC--CChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccc-cCC---
Q 026696 83 IAKYLERIYKYTN--CSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARV-GGV--- 156 (235)
Q Consensus 83 i~~yl~rI~~~~~--~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~V-gGi--- 156 (235)
...+|.++....+ ++..+.-.|.+|++||..++. +.....+-+.+||+.+|+|+= +.+.+-..+.+. .+-
T Consensus 59 y~~~i~~~~~~lkp~Lpq~viaTAivyf~RFy~~~S---v~~~~p~~Ia~tclfLA~KvE-E~~~si~~fv~~~~~~~~~ 134 (305)
T TIGR00569 59 YEKRLLDFCSAFKPTMPTSVVGTAIMYFKRFYLNNS---VMEYHPKIIMLTCVFLACKVE-EFNVSIDQFVGNLKETPLK 134 (305)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHhHHhccCc---hhhcCHHHHHHHHHHHHHhcc-ccCcCHHHHHhhccCCchh
Confidence 3445777788888 999999999999999988642 345678899999999999954 444444444432 222
Q ss_pred CHHHHHHHHHHHHHhCCCceeeCH-H-HHHHHHHHHH
Q 026696 157 SNAELNRLELELLFLLDFGVMVSS-R-VFESYCLHLE 191 (235)
Q Consensus 157 s~~ELN~LE~~FL~lLdf~L~Vs~-~-e~~~y~~~L~ 191 (235)
...++-.+|..+|..|+|+|.|.. . -+..|...++
T Consensus 135 ~~~~Il~~E~~lL~~L~F~L~V~hPyr~L~~~l~dl~ 171 (305)
T TIGR00569 135 ALEQVLEYELLLIQQLNFHLIVHNPYRPLEGFLIDIK 171 (305)
T ss_pred hHHHHHHHHHHHHHHCCCcEEeeCccHHHHHHHHHHH
Confidence 358999999999999999999942 2 2334444443
No 9
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.00048 Score=65.21 Aligned_cols=96 Identities=21% Similarity=0.319 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHH-hhcccccCCCcc-ccccccc--cCCC
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVM-VASKTMDDVHYN-NAFYARV--GGVS 157 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~-lAsK~ldD~~~~-N~~~a~V--gGis 157 (235)
-+-+|+-.++.+.+++++++-+|.=++||+....+ +...-..-+=++|++ +|+|| ++.... -..+..+ |.++
T Consensus 160 iLvdwlvevh~~F~L~~ETL~LaVnliDRfL~~~~---v~~~~lqLvgvsalf~IA~K~-EE~~~P~v~dlv~isd~~~s 235 (391)
T KOG0653|consen 160 ILVDWLVEVHEKFGLSPETLYLAVNLIDRFLSKVK---VPLKKLQLVGVSALLSIACKY-EEISLPSVEDLVLITDGAYS 235 (391)
T ss_pred HHHHHHHHhhhhcCcCHHHHHHHHHHHHHHHHHhc---ccHHHhhHHhHHHHHHHHHhh-hhccCCccceeEeeeCCccc
Confidence 47889999999999999999999999999999743 333444455567757 99999 554333 3444444 5699
Q ss_pred HHHHHHHHHHHHHhCCCceeeCHH
Q 026696 158 NAELNRLELELLFLLDFGVMVSSR 181 (235)
Q Consensus 158 ~~ELN~LE~~FL~lLdf~L~Vs~~ 181 (235)
.+++-.||...|..|+|++.++..
T Consensus 236 ~~~il~mE~~il~~L~f~l~~p~~ 259 (391)
T KOG0653|consen 236 REEILRMEKYILNVLEFDLSVPTP 259 (391)
T ss_pred hHHHHHHHHHHHhccCeeecCCch
Confidence 999999999999999999998654
No 10
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning]
Probab=96.96 E-value=0.0023 Score=59.46 Aligned_cols=102 Identities=22% Similarity=0.286 Sum_probs=82.0
Q ss_pred cCCCCCch--hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccc
Q 026696 74 HGVRAPNI--SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYA 151 (235)
Q Consensus 74 ~~~~~P~i--si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a 151 (235)
|..--|.. =+.|++-.+..--.+-.++|-+|.=|+||+.... ..+...|..-+=++|+.+|+|+=+=..-.-..||
T Consensus 137 Hpdlqp~mRaILlDWlmEVCEvykLHRETFyLAvDy~DRyl~t~--~~v~kt~lQLIGitsLFIAAK~EEIYpPKl~eFA 214 (408)
T KOG0655|consen 137 HPDLQPQMRAILLDWLMEVCEVYKLHRETFYLAVDYFDRYLETQ--VEVSKTNLQLIGITSLFIAAKLEEIYPPKLIEFA 214 (408)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--HHhhhhhHHHhhHHHHHHHHHHhhccCcccccee
Confidence 33334543 3778999999988999999999999999999864 3445566677779999999996554445566788
Q ss_pred cc--cCCCHHHHHHHHHHHHHhCCCcee
Q 026696 152 RV--GGVSNAELNRLELELLFLLDFGVM 177 (235)
Q Consensus 152 ~V--gGis~~ELN~LE~~FL~lLdf~L~ 177 (235)
-| |..+-.++-.||+-.|+.|+|+|.
T Consensus 215 yvTDgAcs~ddIltmE~iilkal~W~l~ 242 (408)
T KOG0655|consen 215 YVTDGACSEDDILTMELIILKALKWELS 242 (408)
T ss_pred eeccCccchHHHHHHHHHHHHHhccccc
Confidence 77 569999999999999999999997
No 11
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=96.91 E-value=0.0029 Score=57.94 Aligned_cols=92 Identities=21% Similarity=0.321 Sum_probs=78.5
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhccccc---C----CCccccccccccCCC
Q 026696 85 KYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMD---D----VHYNNAFYARVGGVS 157 (235)
Q Consensus 85 ~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ld---D----~~~~N~~~a~VgGis 157 (235)
.++.++..+.++...+.-.|.+|++|+.-+++ +...+.+-+..||+.||+|+=| | .+-.+.-|+..---+
T Consensus 50 k~i~~l~~~L~lp~~~laTAi~~f~Rf~Lk~s---v~e~~~~~vv~tcv~LA~K~ed~~~~I~i~~~~~~~~~se~~~~s 126 (297)
T COG5333 50 KLIMDLCTRLNLPQTVLATAILFFSRFYLKNS---VEEISLYSVVTTCVYLACKVEDTPRDISIESFEARDLWSEEPKSS 126 (297)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHhhcc---cccccHHHHHHhheeeeeecccccchhhHHHHHhhcccccccccc
Confidence 67888999999999999999999999988653 6778889999999999999766 1 133355577777789
Q ss_pred HHHHHHHHHHHHHhCCCceeeC
Q 026696 158 NAELNRLELELLFLLDFGVMVS 179 (235)
Q Consensus 158 ~~ELN~LE~~FL~lLdf~L~Vs 179 (235)
.+.+-.+|.+.|+.|+|++.|.
T Consensus 127 r~~Il~~E~~lLEaL~fd~~V~ 148 (297)
T COG5333 127 RERILEYEFELLEALDFDLHVH 148 (297)
T ss_pred HHHHHHHHHHHHHHcccceEec
Confidence 9999999999999999999984
No 12
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning]
Probab=96.63 E-value=0.0028 Score=60.00 Aligned_cols=109 Identities=16% Similarity=0.208 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccc----cccCCC
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYA----RVGGVS 157 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a----~VgGis 157 (235)
||..-+.+|-.-|++...+.-+|+||+++|.-+. .++-.|-+-.--+|++||.|+-|=.--.-+.+- ....++
T Consensus 384 SlKREMr~l~~d~~id~~TVa~AyVYFEKliLkg---lisK~NRKlcAGAclLlaaKmnD~Kks~vKslIek~Ee~fR~n 460 (497)
T KOG4164|consen 384 SLKREMRELGEDCGIDVVTVAMAYVYFEKLILKG---LISKQNRKLCAGACLLLAAKMNDLKKSTVKSLIEKLEEQFRLN 460 (497)
T ss_pred HHHHHHHHhhhccCccceeehhHHHHHHHHHHhh---hhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhccc
Confidence 6788888999899999999999999999998862 456678888888999999998732222222222 256789
Q ss_pred HHHHHHHHHHHHHhCCCceeeCHHHHHHHHHHHHHH
Q 026696 158 NAELNRLELELLFLLDFGVMVSSRVFESYCLHLEKE 193 (235)
Q Consensus 158 ~~ELN~LE~~FL~lLdf~L~Vs~~e~~~y~~~L~~~ 193 (235)
.+||-..|.-.|..|.|.|+++.+|..-.|..|+.+
T Consensus 461 rrdLia~Ef~VlvaLefaL~~~~~eVlPHy~RL~~e 496 (497)
T KOG4164|consen 461 RRDLIAFEFPVLVALEFALHLPEHEVLPHYRRLQQE 496 (497)
T ss_pred HHhhhhhhhhHHHhhhhhccCChhhcchHHHHHhhc
Confidence 999999999999999999999999988888877653
No 13
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=96.25 E-value=0.0076 Score=58.06 Aligned_cols=96 Identities=22% Similarity=0.263 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHH-HHHHHhhcccccCCCccccccccc--cCCCH
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLL-VTSVMVASKTMDDVHYNNAFYARV--GGVSN 158 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~-ltal~lAsK~ldD~~~~N~~~a~V--gGis~ 158 (235)
.|-+|+..++...++.|+++.+|.-.+||+..+. . .+.+...|+ ++|+.+|+||=+=..-.-+.|+-+ |.++.
T Consensus 215 ~Lv~wlvevH~~F~llpeTL~lainiiDrfLs~~-~---v~l~k~QLvg~s~LfIa~K~EE~~~p~i~~l~~~t~g~~t~ 290 (440)
T COG5024 215 ILVDWLVEVHGKFGLLPETLFLAINIIDRFLSSR-V---VSLEKYQLVGISALFIASKYEEVNCPSIKDLVYATDGAFTR 290 (440)
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHHHHhccC-c---ccHHHHHHHHHHHHHHHHhHhHhcCHHHHHHHHHHcccccH
Confidence 3778999999999999999999999999999863 3 345555554 788999999765444444555544 77999
Q ss_pred HHHHHHHHHHHHhCCCceeeCHH
Q 026696 159 AELNRLELELLFLLDFGVMVSSR 181 (235)
Q Consensus 159 ~ELN~LE~~FL~lLdf~L~Vs~~ 181 (235)
+++-.+|+..|..++|++-....
T Consensus 291 ~~i~~aE~~ml~~l~f~is~P~P 313 (440)
T COG5024 291 DDIIRAERYMLEVLDFNISWPSP 313 (440)
T ss_pred HHHHHHHHHHhhhcccccCCCCh
Confidence 99999999999999999987443
No 14
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=93.48 E-value=0.62 Score=42.78 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=82.6
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCCCHHHHHH
Q 026696 84 AKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGVSNAELNR 163 (235)
Q Consensus 84 ~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGis~~ELN~ 163 (235)
...|.++....+++..+.=-|..+..++... .. +...+..-+..+|+-+|.|. ++...+-+..+.+.+++.+|+.+
T Consensus 126 ~~~I~~~~~~L~Lp~~v~e~A~~iyk~~~~~-~~--~rgrs~~~i~AAclYiACR~-~~~prtl~eI~~~~~v~~k~i~~ 201 (310)
T PRK00423 126 LSELDRIASQLGLPRSVREEAAVIYRKAVEK-GL--IRGRSIEGVVAAALYAACRR-CKVPRTLDEIAEVSRVSRKEIGR 201 (310)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-Cc--ccCCCHHHHHHHHHHHHHHH-cCCCcCHHHHHHHhCCCHHHHHH
Confidence 3457788888899999999999888888774 22 34567788899999999995 77778888999999999999999
Q ss_pred HHHHHHHhCCCceee-CHHHH-HHHHHHH
Q 026696 164 LELELLFLLDFGVMV-SSRVF-ESYCLHL 190 (235)
Q Consensus 164 LE~~FL~lLdf~L~V-s~~e~-~~y~~~L 190 (235)
-++.+++.|++++.+ ++++| .+|+..|
T Consensus 202 ~~~~l~k~L~~~~~~~~p~~~i~r~~~~L 230 (310)
T PRK00423 202 CYRFLLRELNLKLPPTDPIDYVPRFASEL 230 (310)
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 999999999998765 45555 5555544
No 15
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription]
Probab=91.51 E-value=0.25 Score=44.08 Aligned_cols=96 Identities=17% Similarity=0.210 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCC-C-------cccc----
Q 026696 81 ISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDV-H-------YNNA---- 148 (235)
Q Consensus 81 isi~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~-~-------~~N~---- 148 (235)
|=..+++..+-.+.++-..++-.|.+|+.|+..+.. +...+..-+..||+-+|+|.=+-- . +.+.
T Consensus 42 i~~~n~I~~lg~~lklRQ~ViATAivY~rRfy~r~S---~k~~~p~lla~TClyLAcKvEE~~i~~~r~l~~~a~~L~~~ 118 (264)
T KOG0794|consen 42 IFMANVIQKLGQHLKLRQRVIATAIVYFRRFYLRKS---LKEIEPRLLAPTCLYLACKVEECPIVHIRLLVNEAKVLKTR 118 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhccCHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhh
Confidence 345567888888889999999999999999998743 456677889999999999976652 1 1111
Q ss_pred --ccccccCCCHHHHHHHHHHHHHhCCCceeeC
Q 026696 149 --FYARVGGVSNAELNRLELELLFLLDFGVMVS 179 (235)
Q Consensus 149 --~~a~VgGis~~ELN~LE~~FL~lLdf~L~Vs 179 (235)
+|..-.....+.+-++|-..|..||+-|.|-
T Consensus 119 f~~~~e~~~~~~~~I~e~Ef~llE~Ld~~LIVh 151 (264)
T KOG0794|consen 119 FSYWPEKFPYERKDILEMEFYLLEALDCYLIVH 151 (264)
T ss_pred cccchhhcCCCcCcchhhhhhHHhhhceeEEEe
Confidence 3555566788899999999999999999984
No 16
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning]
Probab=91.49 E-value=0.95 Score=42.21 Aligned_cols=108 Identities=16% Similarity=0.180 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCcc--------ccccccc
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYN--------NAFYARV 153 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~--------N~~~a~V 153 (235)
.-..||..+-.+.+++.-++-.|.+|.+||.-.+. +.....+-+-.+|+.+|.|.=+ ..-+ ++++...
T Consensus 41 ~~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s---~~~~~~~~vA~sclfLAgKvEe-tp~kl~dIi~~s~~~~~~~ 116 (323)
T KOG0834|consen 41 EGAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHS---FKKFDPYTVAASCLFLAGKVEE-TPRKLEDIIKVSYRYLNPK 116 (323)
T ss_pred HHHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcc---cccCcHHHHHHHHHHHHhhccc-CcccHHHHHHHHHHHcCcc
Confidence 45679999999999999999999999999988642 2333334566778889998543 3222 2222211
Q ss_pred -------cCCCHHHHHHHHHHHHHhCCCceeeCH-HHH-HHHHHHHHHH
Q 026696 154 -------GGVSNAELNRLELELLFLLDFGVMVSS-RVF-ESYCLHLEKE 193 (235)
Q Consensus 154 -------gGis~~ELN~LE~~FL~lLdf~L~Vs~-~e~-~~y~~~L~~~ 193 (235)
.-=..+++-.+|+-.|..|+|++.|.. ..| .+|+..+...
T Consensus 117 ~~~~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~l~~~ 165 (323)
T KOG0834|consen 117 DLELEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKKLKAD 165 (323)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHHhhhh
Confidence 111367888999999999999999965 444 5566655543
No 17
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=90.85 E-value=2 Score=40.20 Aligned_cols=102 Identities=19% Similarity=0.240 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCC-----cc-----ccccc-ccc
Q 026696 86 YLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVH-----YN-----NAFYA-RVG 154 (235)
Q Consensus 86 yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~-----~~-----N~~~a-~Vg 154 (235)
||+.---..+++..|...++|+++|++...+ +-..+..-+..+|+.||+|.=+... ++ -..+. +-.
T Consensus 29 ~Iqea~ILL~L~q~a~atgqVLFqRf~~~ks---~v~~~~e~vv~ACv~LASKiEE~Prr~rdVinVFh~L~~r~~~~~~ 105 (367)
T KOG0835|consen 29 LIQEAGILLNLPQVAMATGQVLFQRFCYSKS---FVRHDFEIVVMACVLLASKIEEEPRRIRDVINVFHYLEQRRESEAA 105 (367)
T ss_pred HHHhhhHhhcCcHHHHHHHHHHHHHHHhccc---cccccHHHHHHHHHHHHhhhccccccHhHHHHHHHHHHHHHhccCc
Confidence 4444444557899999999999999998643 2335677899999999999765431 00 00010 001
Q ss_pred C--------C-CHHHHHHHHHHHHHhCCCceee--CHHHHHHHHHHH
Q 026696 155 G--------V-SNAELNRLELELLFLLDFGVMV--SSRVFESYCLHL 190 (235)
Q Consensus 155 G--------i-s~~ELN~LE~~FL~lLdf~L~V--s~~e~~~y~~~L 190 (235)
+ + -....-..|++.|..|+|+.+| .-..+..|...|
T Consensus 106 ~~~~~~~~~~~lk~~~ir~e~~ILr~LGF~~Hv~hPhklii~YLqtL 152 (367)
T KOG0835|consen 106 EHLILARLYINLKMQVIRAERRILRELGFDVHVEHPHKLIIMYLQTL 152 (367)
T ss_pred chhhhhhHHhhhhhHHHHHHHHHHHHhCCeeeeeccHHHHHHHHHHh
Confidence 1 0 1335567899999999999998 344566776554
No 18
>KOG1674 consensus Cyclin [General function prediction only]
Probab=90.57 E-value=0.11 Score=45.58 Aligned_cols=96 Identities=18% Similarity=0.118 Sum_probs=76.2
Q ss_pred hHHHHHHHHH--HHHhhCCCcc-cccchhHHHHHHHHHhhcccccCCCc-----ccccccc-ccC-CCHHHHHHHHHHHH
Q 026696 100 CFVVGYVYID--RLLHRHPDSL-VVSLNVHRLLVTSVMVASKTMDDVHY-----NNAFYAR-VGG-VSNAELNRLELELL 169 (235)
Q Consensus 100 ~~v~ALiYld--Rl~~~~~~~~-l~~~n~hRL~ltal~lAsK~ldD~~~-----~N~~~a~-VgG-is~~ELN~LE~~FL 169 (235)
..+++..|++ |+....+... ......++.++++++.+.|...|..- +++.|+. +.| ......|.+|+++|
T Consensus 3 ~~~~~s~~~~~~~~~~~~~~~~~~~~ss~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~isi~~yl 82 (218)
T KOG1674|consen 3 TLMTMSVYINPDKLRLNLPDNPTGRNSSITPIFLTCLSSLLKRLNDSNENLSRENNKSWASPTTGFDGVSTPNISIRQYL 82 (218)
T ss_pred hhhHhHhhcCccchhhccCcccccccccccchHHHHHHHHHHHHHhcChhhhcccccccccccccccCCCCCCcchHHHH
Confidence 5667788888 8877644332 23456899999999999999998876 7888985 444 46889999999999
Q ss_pred HhCCCceeeCHHHHHHHHHHHHHHHh
Q 026696 170 FLLDFGVMVSSRVFESYCLHLEKEML 195 (235)
Q Consensus 170 ~lLdf~L~Vs~~e~~~y~~~L~~~~~ 195 (235)
..+.|...+++++|-.=+-.+.+...
T Consensus 83 eri~k~~~~s~~~lv~al~Yldr~~~ 108 (218)
T KOG1674|consen 83 ERIFKYSKCSPECLVLALVYLDRFVK 108 (218)
T ss_pred HHHHHHhcCCchhhhhhhhhhhhhhh
Confidence 99999999999999776666666654
No 19
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=89.70 E-value=1 Score=41.66 Aligned_cols=95 Identities=17% Similarity=0.290 Sum_probs=70.1
Q ss_pred CCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccc--cC--CCHHHHHHHHHHHHH
Q 026696 95 NCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARV--GG--VSNAELNRLELELLF 170 (235)
Q Consensus 95 ~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~V--gG--is~~ELN~LE~~FL~ 170 (235)
.+.+++.-.|+.|+-|+.-.+.- -....+-++.||+.+|.|. ++.+.+-..|++- |+ =+...+-..|...|+
T Consensus 73 ~lp~~Vv~TA~~fFkRffL~nsv---me~~pk~I~~tc~flA~Ki-eef~ISieqFvkn~~~~~~k~~e~vLk~E~~llq 148 (325)
T KOG2496|consen 73 NLPTSVVSTAIEFFKRFFLENSV---MEYSPKIIMATCFFLACKI-EEFYISIEQFVKNMNGRKWKTHEIVLKYEFLLLQ 148 (325)
T ss_pred CCchHHHHHHHHHHHHHHHhcch---hhcChHHHHHHHHHHHhhh-HhheecHHHHHhhccCcccccHHHHHhchHHHHH
Confidence 57888999999999999876432 3345677889999999994 5666666666642 22 468888999999999
Q ss_pred hCCCceee--CHHHHHHHHHHHHHH
Q 026696 171 LLDFGVMV--SSRVFESYCLHLEKE 193 (235)
Q Consensus 171 lLdf~L~V--s~~e~~~y~~~L~~~ 193 (235)
.|+|+|.| +-.-++-|...++..
T Consensus 149 sL~f~L~vh~PyRPleGFl~D~kt~ 173 (325)
T KOG2496|consen 149 SLKFSLTVHNPYRPLEGFLLDMKTR 173 (325)
T ss_pred hhhhhheecCCCCchHHHHHHHHHH
Confidence 99999998 333455555555544
No 20
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=86.14 E-value=4.9 Score=36.91 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=75.5
Q ss_pred CCCchhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCC
Q 026696 77 RAPNISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGV 156 (235)
Q Consensus 77 ~~P~isi~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGi 156 (235)
..|.++..+|+.|+....+++..+.-.|...+.+.... + .....+..-+..+|+-+|++... ..-+-+..+.+.||
T Consensus 213 ~~~~~~p~~~i~r~~~~L~L~~~v~~~A~~i~~~a~~~--~-l~~Gr~P~sIAAAaIYlA~~~~g-~~~t~keIa~v~~V 288 (310)
T PRK00423 213 KLPPTDPIDYVPRFASELGLSGEVQKKAIEILQKAKEK--G-LTSGKGPTGLAAAAIYIASLLLG-ERRTQREVAEVAGV 288 (310)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--C-cccCCCHHHHHHHHHHHHHHHhC-CCCCHHHHHHHcCC
Confidence 46777889999999999999999888888777777653 3 24567888999999999999664 44577788889999
Q ss_pred CHHHHHHHHHHHHHhCCCc
Q 026696 157 SNAELNRLELELLFLLDFG 175 (235)
Q Consensus 157 s~~ELN~LE~~FL~lLdf~ 175 (235)
+..++..-=++++..++..
T Consensus 289 s~~tI~~~ykel~~~l~~~ 307 (310)
T PRK00423 289 TEVTVRNRYKELAEKLDIK 307 (310)
T ss_pred CHHHHHHHHHHHHHHhCcc
Confidence 9999887666777666543
No 21
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=80.86 E-value=7.4 Score=27.46 Aligned_cols=71 Identities=14% Similarity=0.100 Sum_probs=54.4
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCCCHHHH
Q 026696 87 LERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGVSNAEL 161 (235)
Q Consensus 87 l~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGis~~EL 161 (235)
+.|+....+++..+.=.|.-+.++..... .....+..-+..+|+-+|++.. +...+-+..+.+.||+.+++
T Consensus 1 I~r~~~~L~L~~~v~~~A~~i~~~~~~~~---~~~Gr~~~~iaAA~iY~acr~~-~~~~t~~eIa~~~~Vs~~tI 71 (71)
T PF00382_consen 1 IPRICSKLGLPEDVRERAKEIYKKAQERG---LLKGRSPESIAAACIYLACRLN-GVPRTLKEIAEAAGVSEKTI 71 (71)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHTT---TSTTS-HHHHHHHHHHHHHHHT-TSSSSHHHHHHHCTSSHHHH
T ss_pred ChHHHhHcCCCHHHHHHHHHHHHHHHHcC---CcccCCHHHHHHHHHHHHHHHc-CCCcCHHHHHHHhCCCCCcC
Confidence 57888999999999999998888887742 2345678889999999999854 66677888888999988765
No 22
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=66.82 E-value=59 Score=29.79 Aligned_cols=108 Identities=18% Similarity=0.172 Sum_probs=79.2
Q ss_pred CchhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCCCH
Q 026696 79 PNISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGVSN 158 (235)
Q Consensus 79 P~isi~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGis~ 158 (235)
.-+....++.++....+++..+--.|....-+.... + .+...++.-++.+|+-+|.+ ..+..-+-...+++.+++.
T Consensus 96 nl~~a~~~l~~~~~~l~LP~~v~e~A~~iyr~a~~~--~-l~rGRsie~v~AA~iY~acR-~~~~prtl~eIa~a~~V~~ 171 (285)
T COG1405 96 NLITALEELERIASALGLPESVRETAARIYRKAVDK--G-LLRGRSIESVAAACIYAACR-INGVPRTLDEIAKALGVSK 171 (285)
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhc--C-CCcCCcHHHHHHHHHHHHHH-HcCCCccHHHHHHHHCCCH
Confidence 334678889999999999999988887666666553 2 22345556666666666666 6777888888999999999
Q ss_pred HHHHHHHHHHHHhCCCcee-eCHHHH-HHHHHHH
Q 026696 159 AELNRLELELLFLLDFGVM-VSSRVF-ESYCLHL 190 (235)
Q Consensus 159 ~ELN~LE~~FL~lLdf~L~-Vs~~e~-~~y~~~L 190 (235)
+|+.+..+.....|+=.+- +++.+| .+|+..|
T Consensus 172 kei~rtyr~~~~~L~l~~~~~~p~~yi~rf~s~L 205 (285)
T COG1405 172 KEIGRTYRLLVRELKLKIPPVDPSDYIPRFASKL 205 (285)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHc
Confidence 9999999988877765555 566666 5666555
No 23
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=66.51 E-value=11 Score=28.13 Aligned_cols=87 Identities=11% Similarity=0.098 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCCCHHHH
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGVSNAEL 161 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGis~~EL 161 (235)
+..+|++++.+..+.+....-+|.+.++-.... . ..-....-.+-.+|+.+|.+.++....++.......|++.+++
T Consensus 2 Tp~~Fl~~~~~~~~~~~~~~~~a~~l~el~l~~-~--~fl~~~PS~iAaAai~lA~~~~~~~~~~~~~l~~~t~~~~~~l 78 (118)
T PF02984_consen 2 TPYDFLRRFLKISNADQEVRNLARYLLELSLLD-Y--EFLQYPPSVIAAAAILLARKILGKEPPWPESLEKLTGYDKEDL 78 (118)
T ss_dssp -HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHS-H--HHTTS-HHHHHHHHHHHHHHHHHSSTCSHHHHHHHHTS-HHHH
T ss_pred cHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhh-c--cccCCCHHHHHHHHHHHHHHHhCccccCCccchhhcCCCHHHH
Confidence 367899999777666677777777777743332 1 1233455677888899999987743444455555667766665
Q ss_pred HHHHHHHHHh
Q 026696 162 NRLELELLFL 171 (235)
Q Consensus 162 N~LE~~FL~l 171 (235)
...=..+...
T Consensus 79 ~~c~~~i~~~ 88 (118)
T PF02984_consen 79 KECIELIQEL 88 (118)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 24
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=56.30 E-value=50 Score=30.24 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=65.2
Q ss_pred CCCchhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCC
Q 026696 77 RAPNISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGV 156 (235)
Q Consensus 77 ~~P~isi~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGi 156 (235)
..|.+...+|+.|+....+++.++--.|.=.+++..... ... ....--+-.+|+.+|++..+ ..-+.+.-|++.|+
T Consensus 188 ~~~~~~p~~yi~rf~s~L~l~~~v~~~a~ei~~~~~~~g--~~~-Gk~P~glAaaaiy~as~l~~-~~~tq~eva~v~~v 263 (285)
T COG1405 188 KIPPVDPSDYIPRFASKLGLSDEVRRKAIEIVKKAKRAG--LTA-GKSPAGLAAAAIYLASLLLG-ERRTQKEVAKVAGV 263 (285)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC--ccc-CCCchhHHHHHHHHHHHHhC-CchHHHHHHHHhCC
Confidence 455588999999999999999999999999999888752 222 45566788888999998776 55667778888888
Q ss_pred CHHHHHH
Q 026696 157 SNAELNR 163 (235)
Q Consensus 157 s~~ELN~ 163 (235)
+..-|..
T Consensus 264 tevTIrn 270 (285)
T COG1405 264 TEVTIRN 270 (285)
T ss_pred eeeHHHH
Confidence 7655543
No 25
>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis. Other proteins containing this domain stimulate transcription from the HSP70 promoter.
Probab=44.91 E-value=55 Score=26.80 Aligned_cols=44 Identities=25% Similarity=0.458 Sum_probs=33.7
Q ss_pred ccCCCCCchhHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHhhCC
Q 026696 73 FHGVRAPNISIAKYLERIYKYTN-CSPSCFVVGYVYIDRLLHRHP 116 (235)
Q Consensus 73 F~~~~~P~isi~~yl~rI~~~~~-~s~~~~v~ALiYldRl~~~~~ 116 (235)
+....+|.--+..|++|+...+- +++...+..+..+.++.+++|
T Consensus 54 l~~~~~~~~rvaAFiKRLl~~sl~~~~~~~~~~L~~i~~ll~~~p 98 (164)
T PF03914_consen 54 LKSDHLPIQRVAAFIKRLLQLSLHLPPSFALAILALIRKLLKRHP 98 (164)
T ss_pred HcccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCH
Confidence 35566677789999999998876 455666666688889998876
No 26
>KOG3956 consensus Alpha 2-macroglobulin receptor-associated protein [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms; Lipid transport and metabolism; Defense mechanisms]
Probab=41.67 E-value=47 Score=30.73 Aligned_cols=63 Identities=24% Similarity=0.288 Sum_probs=46.4
Q ss_pred cccccc--ccCCCHHHHHHHHHHHHHhCCCceeeCHHHHHHHHHHHHHHHhhcCCccccccccCCCCcchhhhccc
Q 026696 147 NAFYAR--VGGVSNAELNRLELELLFLLDFGVMVSSRVFESYCLHLEKEMLVNGTTSKIEKAFISNPVDDVTEISA 220 (235)
Q Consensus 147 N~~~a~--VgGis~~ELN~LE~~FL~lLdf~L~Vs~~e~~~y~~~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 220 (235)
++-|.+ .+|+|.+|||.|-.+|+.. .+-...|+..|+.... ....-|+.+.+...+++.|++-
T Consensus 158 ~kLW~kA~~sgFs~eEL~~L~~Ef~hh--------~~Kv~vY~~lLe~~tv---~~~~HEN~I~~~dlsDvneik~ 222 (359)
T KOG3956|consen 158 QKLWSKAQNSGFSQEELNALHGEFKHH--------EQKVRVYEDLLEDFTV---KKVPHENSIQHDDLSDVNEIKI 222 (359)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhcc---ccccccccCCchhhhhhhhccc
Confidence 456875 6899999999999999874 3445567777776522 3455678888888888877653
No 27
>PF11357 Spy1: Cell cycle regulatory protein; InterPro: IPR020984 Speedy (Spy1) is a cell cycle regulatory protein which activates CDK2, the major kinase that allows progression through G1/S phase and further replication events. Spy1 expression overcomes a p27-induced cell cycle arrest to allow for DNA synthesis, so cell cycle progression occurs due to an interaction between Spy1 and p27 []. Spy1 is also known as Ringo protein A.
Probab=40.32 E-value=1.4e+02 Score=24.48 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcCCChhhHHHHH--HHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCc-cccccccccCC---
Q 026696 83 IAKYLERIYKYTNCSPSCFVVGY--VYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHY-NNAFYARVGGV--- 156 (235)
Q Consensus 83 i~~yl~rI~~~~~~s~~~~v~AL--iYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~-~N~~~a~VgGi--- 156 (235)
|++||.- =+...+| .-+++|+ +|+.|.-- .....|.-. |..|+-+|+-+=+|..- ...-+.=+-|-
T Consensus 15 I~~FL~~-D~~~~~s-DKYLLAmV~~YF~Ragl-----~~~~Y~ri~-FFlALYLAndmEED~~~~K~~If~f~~G~~w~ 86 (131)
T PF11357_consen 15 IQKFLAW-DKCLRVS-DKYLLAMVIAYFSRAGL-----FSWQYQRIH-FFLALYLANDMEEDDEEPKYEIFPFLYGKNWR 86 (131)
T ss_pred HHHHHHh-Ccchhhh-hHHHHHHHHHHHHhccc-----chhhcchHH-HHHHHHHhhHHHhccchHHHHHHHHHHCcchH
Confidence 6666654 1112233 3344444 66766532 222233333 55668899999888643 33323223333
Q ss_pred -CHHHHHHHHHHHHHhCCCceeeCHHHHHH
Q 026696 157 -SNAELNRLELELLFLLDFGVMVSSRVFES 185 (235)
Q Consensus 157 -s~~ELN~LE~~FL~lLdf~L~Vs~~e~~~ 185 (235)
......++-.+|...++|+..|+.++-+.
T Consensus 87 ~~~~~F~klr~~~~~~m~~Ra~Vsre~cEE 116 (131)
T PF11357_consen 87 SQIPQFHKLRDQFWRRMDWRAWVSREECEE 116 (131)
T ss_pred HHhHHHHHHHHHHHHHcCCceeeCHHHHHH
Confidence 35678889999999999999999986543
No 28
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=39.69 E-value=67 Score=25.60 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccc
Q 026696 84 AKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTM 140 (235)
Q Consensus 84 ~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~l 140 (235)
.+-|..|+... +...-+..|+-|+|.+.+.++ +.+...-|.+||==|.++++|=.
T Consensus 52 ~~lL~AIv~sf-~~n~~i~~al~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v~s~~~~ 106 (126)
T PF12921_consen 52 SRLLIAIVHSF-GYNGDIFSALKLVDFFSRKYP-IPIPKEFWRRLLEWAYVLSSKRE 106 (126)
T ss_pred HHHHHHHHHHH-HhcccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhcCCcc
Confidence 44566666666 455779999999999999998 99999999999999998888633
No 29
>PHA02054 hypothetical protein
Probab=35.57 E-value=1.6e+02 Score=22.28 Aligned_cols=46 Identities=17% Similarity=0.387 Sum_probs=33.4
Q ss_pred ccccCCCCCch----hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCC
Q 026696 71 NTFHGVRAPNI----SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHP 116 (235)
Q Consensus 71 ~~F~~~~~P~i----si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~ 116 (235)
-++...-.|++ .+..++...+...+|+..||.+...=-..|...+.
T Consensus 36 IVY~N~IvpS~dnSv~Flehl~~kw~svkCsd~Cfq~Gy~eAk~Fv~~~~ 85 (94)
T PHA02054 36 IVYTNDIVHSKDNSVQFLEYLDTKWGSVGCSDTCFQLGYQEAKLFVAYNT 85 (94)
T ss_pred EEEecccccccccHHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHhhhcc
Confidence 34444445654 57788888899999999999998776666665543
No 30
>PF04219 DUF413: Protein of unknown function, DUF; InterPro: IPR007335 This is a family of uncharacterised proteins.
Probab=34.16 E-value=45 Score=25.67 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=23.6
Q ss_pred ccccCCCccccccccccCCCHHHHHHHHHH
Q 026696 138 KTMDDVHYNNAFYARVGGVSNAELNRLELE 167 (235)
Q Consensus 138 K~ldD~~~~N~~~a~VgGis~~ELN~LE~~ 167 (235)
+|+||..|. +-|++-|.++++|-..||..
T Consensus 1 rF~D~~~fP-rGF~RsGdFTi~Ea~lLe~~ 29 (93)
T PF04219_consen 1 RFFDDKNFP-RGFSRSGDFTIKEAQLLEQY 29 (93)
T ss_pred CCCcCCCCC-CccccCCcccHHHHHHHHHH
Confidence 578888774 45788899999999999975
No 31
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning]
Probab=29.01 E-value=29 Score=32.96 Aligned_cols=97 Identities=14% Similarity=0.200 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccc--cCCCHH
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARV--GGVSNA 159 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~V--gGis~~ 159 (235)
.+.+++-.+.+-.....+++-++..|+||+.... .++..--|++=.+|+++|+||-.-..-.-..|..+ .-+.-.
T Consensus 139 ilvdwlvevsee~r~~~e~l~ls~~~~drfl~~~---~~~~~k~ql~g~s~m~I~sk~ee~~~~~~~ef~~itd~ty~~~ 215 (359)
T KOG0654|consen 139 ILVDWLVEVSEEYRLTFETLYLSVNYRDRFLSYK---EVNKQKLQLVGISAMLIASKYEEIKEPRVEEFCYITDNTYTYW 215 (359)
T ss_pred hhhhhhhHHHHHHHhhhhheeecHHHHHHHhccC---ccHHHHHHHhCcccceeeccchhhcchHHHHHHhhhhhhhHHH
Confidence 6778888888888889999999999999998753 34445566777889999999876543222222222 336788
Q ss_pred HHHHHHHHHHHhCCCceeeCHH
Q 026696 160 ELNRLELELLFLLDFGVMVSSR 181 (235)
Q Consensus 160 ELN~LE~~FL~lLdf~L~Vs~~ 181 (235)
++-.||...|..+.|.+.++..
T Consensus 216 qv~~~~~~il~~l~~~~~~pt~ 237 (359)
T KOG0654|consen 216 QVLRMEIDILNALTFELVRPTS 237 (359)
T ss_pred HHHHHHHHHHHHhHHHHhCchH
Confidence 9999999999999999988655
Done!