Query 026696
Match_columns 235
No_of_seqs 193 out of 900
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 19:51:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026696.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026696hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pmi_B PHO85 cyclin PHO80, ami 100.0 3E-41 1E-45 303.0 11.8 155 23-191 31-185 (293)
2 2f2c_A Cyclin homolog, V-cycli 98.7 1.4E-07 4.8E-12 82.1 11.6 103 82-187 54-159 (254)
3 1f5q_B Gamma herpesvirus cycli 98.7 1.3E-07 4.6E-12 82.8 10.9 103 82-187 51-156 (252)
4 3g33_B CCND3 protein; Ser/Thr 98.6 1.1E-07 3.7E-12 85.4 10.0 103 82-187 73-178 (306)
5 1g3n_C V-cyclin; cyclin-depend 98.6 2.5E-07 8.6E-12 80.6 10.1 103 82-187 53-158 (257)
6 2cch_B Cyclin A2, cyclin-A; co 98.6 2.7E-07 9.4E-12 80.5 10.2 102 82-186 41-145 (260)
7 2w96_A G1/S-specific cyclin-D1 98.6 3.3E-07 1.1E-11 80.4 10.7 102 82-186 59-163 (271)
8 2b9r_A Human cyclin B1; cell c 98.5 4.2E-07 1.4E-11 79.8 11.0 101 82-185 40-143 (269)
9 1w98_B Cyclin E, G1/S-specific 98.5 4.7E-07 1.6E-11 80.2 11.3 105 82-188 52-159 (283)
10 2i53_A Cyclin K; cell cycle, t 98.2 6.1E-06 2.1E-10 71.4 10.0 99 82-184 43-155 (258)
11 1zp2_A RNA polymerase II holoe 98.2 1E-05 3.6E-10 69.3 10.1 99 81-183 29-137 (235)
12 2ivx_A Cyclin-T2; transcriptio 98.1 1.7E-05 5.6E-10 68.8 10.1 99 82-184 33-150 (257)
13 3rgf_B Cyclin-C; protein kinas 98.0 4.1E-05 1.4E-09 67.7 11.1 106 82-190 45-168 (285)
14 1jkw_A Cyclin H; cell cycle, c 97.9 6.7E-05 2.3E-09 67.7 11.7 104 84-191 61-175 (323)
15 1c9b_A General transcription f 97.8 0.00014 4.8E-09 60.9 10.6 104 83-190 8-113 (207)
16 2pk2_A Cyclin-T1, protein TAT; 97.8 1.8E-05 6E-10 72.6 5.2 98 82-183 40-156 (358)
17 1ais_B TFB TFIIB, protein (tra 97.2 0.001 3.6E-08 55.1 8.2 105 82-190 11-119 (200)
18 3k7a_M Transcription initiatio 94.4 0.039 1.3E-06 49.9 4.9 106 82-191 128-247 (345)
19 1ais_B TFB TFIIB, protein (tra 91.9 0.37 1.3E-05 39.4 6.8 96 77-176 100-197 (200)
20 1c9b_A General transcription f 88.9 1.1 3.7E-05 36.8 7.1 88 79-170 98-185 (207)
21 4bbr_M Transcription initiatio 87.0 1.1 3.9E-05 40.4 6.5 107 81-191 127-247 (345)
22 2i53_A Cyclin K; cell cycle, t 70.4 24 0.00081 29.5 9.0 88 83-173 151-250 (258)
23 3rgf_B Cyclin-C; protein kinas 69.9 10 0.00034 32.8 6.7 96 83-184 157-253 (285)
24 2ivx_A Cyclin-T2; transcriptio 67.4 35 0.0012 28.5 9.5 89 82-172 145-238 (257)
25 3k7a_M Transcription initiatio 61.9 1.6 5.6E-05 39.1 0.0 90 77-170 229-318 (345)
26 2pk2_A Cyclin-T1, protein TAT; 59.1 22 0.00074 32.0 6.9 89 83-173 153-246 (358)
27 2f2c_A Cyclin homolog, V-cycli 56.4 23 0.00078 29.8 6.3 87 82-171 151-245 (254)
28 1zp2_A RNA polymerase II holoe 49.6 20 0.00069 29.7 4.8 82 83-170 134-216 (235)
29 2b9r_A Human cyclin B1; cell c 49.3 18 0.00062 30.8 4.5 84 82-169 137-220 (269)
30 2cch_B Cyclin A2, cyclin-A; co 47.3 41 0.0014 28.3 6.4 86 82-170 138-224 (260)
31 1g3n_C V-cyclin; cyclin-depend 47.0 77 0.0026 26.5 8.1 86 82-170 150-244 (257)
32 3g33_B CCND3 protein; Ser/Thr 46.2 44 0.0015 29.1 6.7 87 82-171 170-264 (306)
33 4bbr_M Transcription initiatio 46.0 4.3 0.00015 36.5 0.0 92 77-172 229-320 (345)
34 2w96_A G1/S-specific cyclin-D1 27.5 1.4E+02 0.0047 25.1 6.6 57 82-141 156-216 (271)
No 1
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=100.00 E-value=3e-41 Score=303.05 Aligned_cols=155 Identities=30% Similarity=0.443 Sum_probs=141.2
Q ss_pred ChhhHHHHHHHHHHHHHHHhcchhhhhhhhhhcCCCccCCCCCCCCccccccCCCCCchhHHHHHHHHHHHcCCChhhHH
Q 026696 23 TTPRVLTIIASVMEKLVARNDRLADSLSRQLTKGNGVFSGSTPIGTSLNTFHGVRAPNISIAKYLERIYKYTNCSPSCFV 102 (235)
Q Consensus 23 ~~p~~l~~la~~Le~~~~~nd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~P~isi~~yl~rI~~~~~~s~~~~v 102 (235)
+..+++.+||.+|+++++.||..+..... ....+++||+..+|+|+|.+|+.||+++++|+++|++
T Consensus 31 ~~~dlv~~IA~~L~~LI~~Nd~~~~~~~~--------------~~~~~t~F~~~~~P~ISI~~Yl~RI~k~t~ls~~~ll 96 (293)
T 2pmi_B 31 SRTDLVVLISRMLVSLIAINENSATKKSD--------------DQITLTRYHSKIPPNISIFNYFIRLTKFSSLEHCVLM 96 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC----------------------CCCCTTCCSSCCSSCHHHHHHHHHHTTTCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccccccccc--------------cccccccccCCCCCCCcHHHHHHHHHHHcCCCHHHHH
Confidence 46689999999999999999998643211 1246889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCCCHHHHHHHHHHHHHhCCCceeeCHHH
Q 026696 103 VGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGVSNAELNRLELELLFLLDFGVMVSSRV 182 (235)
Q Consensus 103 ~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGis~~ELN~LE~~FL~lLdf~L~Vs~~e 182 (235)
+|++|||||..++|++.+++.||||||++|+|||+|||||.+|+|++||+||||+++|||.||++||.+|||+|+|+.++
T Consensus 97 ~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN~LE~eFL~lLdf~L~V~~ee 176 (293)
T 2pmi_B 97 TSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNILENDFLKRVNYRIIPRDHN 176 (293)
T ss_dssp HHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTTTCCSCCTTH
T ss_pred HHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHHHHHHHHHHHcCCceeeCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 026696 183 FESYCLHLE 191 (235)
Q Consensus 183 ~~~y~~~L~ 191 (235)
|..|+..+.
T Consensus 177 ~~~cy~E~~ 185 (293)
T 2pmi_B 177 ITLCSIEQK 185 (293)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHHh
Confidence 999887653
No 2
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=98.68 E-value=1.4e-07 Score=82.07 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCcccccccccc--CCCHH
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVG--GVSNA 159 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~Vg--Gis~~ 159 (235)
.+-+|+..+....+++++++-+|..|+||+..+. .+.....+-+-++|+.+|+|+-+-..-+-+.+..+. .++.+
T Consensus 54 ~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~---~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~ 130 (254)
T 2f2c_A 54 ILLTWMHLLCESFELDKSVFPLSVSILDRYLCKK---QGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNL 130 (254)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTS---CCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccC---CcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHH
Confidence 4789999999999999999999999999999864 345677889999999999998776666666677664 48999
Q ss_pred HHHHHHHHHHHhCCCceee-CHHHHHHHH
Q 026696 160 ELNRLELELLFLLDFGVMV-SSRVFESYC 187 (235)
Q Consensus 160 ELN~LE~~FL~lLdf~L~V-s~~e~~~y~ 187 (235)
|+-+||+..|..|+|+|.+ ++..|-.++
T Consensus 131 ~i~~mE~~IL~~L~~~l~~~tp~~fl~~~ 159 (254)
T 2f2c_A 131 ELINQEKDILEALKWDTEAVLATDFLIPL 159 (254)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCGGGSHHHH
T ss_pred HHHHHHHHHHHHCCCcCCCCCHHHHHHHH
Confidence 9999999999999999986 565555443
No 3
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=98.66 E-value=1.3e-07 Score=82.83 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccc--cCCCHH
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARV--GGVSNA 159 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~V--gGis~~ 159 (235)
.+-+|+..+....+++++++-+|..|+||+..+. .+.....+-+-++|+.+|+|+-+-....-+.+..+ +.++.+
T Consensus 51 ~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~---~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~ 127 (252)
T 1f5q_B 51 VLTTWMFCVCKDLRQDNNVFPLAVALLDELFLST---RIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTAD 127 (252)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHS---CCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCC---CcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHH
Confidence 5889999999999999999999999999999975 34566788888999999999877655555555554 458999
Q ss_pred HHHHHHHHHHHhCCCceee-CHHHHHHHH
Q 026696 160 ELNRLELELLFLLDFGVMV-SSRVFESYC 187 (235)
Q Consensus 160 ELN~LE~~FL~lLdf~L~V-s~~e~~~y~ 187 (235)
|+-+||+..|..|+|+|.+ ++..|-.++
T Consensus 128 ~i~~mE~~IL~~L~w~l~~pTp~~FL~~~ 156 (252)
T 1f5q_B 128 KLLTLEVKSLDTLSWVADRCLSTDLICYI 156 (252)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccCCCCHHHHHHHH
Confidence 9999999999999999996 677775554
No 4
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=98.64 E-value=1.1e-07 Score=85.44 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCcccccccccc--CCCHH
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVG--GVSNA 159 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~Vg--Gis~~ 159 (235)
.+-+|+.++....+++++++-+|..|+||+..+. .+.....+.+-++|+.+|+|+-+-...+-+.+..+. .++.+
T Consensus 73 ~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~---~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~ 149 (306)
T 3g33_B 73 MLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCV---PTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPR 149 (306)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHC---CCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHH
T ss_pred HHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHH
Confidence 5889999999999999999999999999999975 356778899999999999998776665666676664 48999
Q ss_pred HHHHHHHHHHHhCCCceee-CHHHHHHHH
Q 026696 160 ELNRLELELLFLLDFGVMV-SSRVFESYC 187 (235)
Q Consensus 160 ELN~LE~~FL~lLdf~L~V-s~~e~~~y~ 187 (235)
|+-+||+.+|..|+|+|.+ ++..|-.++
T Consensus 150 ~i~~mE~~IL~~L~f~l~~~tp~~fl~~~ 178 (306)
T 3g33_B 150 QLRDWEVLVLGKLKWDLAAVIAHDFLAFI 178 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCGGGGHHHH
T ss_pred HHHHHHHHHHHHcCCccCCCCHHHHHHHH
Confidence 9999999999999999987 555554443
No 5
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=98.57 E-value=2.5e-07 Score=80.60 Aligned_cols=103 Identities=19% Similarity=0.177 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCcccccccccc--CCCHH
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVG--GVSNA 159 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~Vg--Gis~~ 159 (235)
.+-+|+..+....+++++++-+|..|+||+..+. .+.....+-+-++|+.+|+|+-+-..-+-+.+..+. .++.+
T Consensus 53 ~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~---~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~ 129 (257)
T 1g3n_C 53 LLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIK---QVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQ 129 (257)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccC---CCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHH
Confidence 5789999999999999999999999999999864 356677888999999999998776555666677664 48999
Q ss_pred HHHHHHHHHHHhCCCceee-CHHHHHHHH
Q 026696 160 ELNRLELELLFLLDFGVMV-SSRVFESYC 187 (235)
Q Consensus 160 ELN~LE~~FL~lLdf~L~V-s~~e~~~y~ 187 (235)
|+-+||+..|..|+|+|.+ ++..|-.++
T Consensus 130 ~i~~mE~~iL~~L~~~l~~~tp~~fl~~~ 158 (257)
T 1g3n_C 130 ELIDQEKELLEKLAWRTEAVLATDVTSFL 158 (257)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcCCCCCHHHHHHHH
Confidence 9999999999999999986 666665544
No 6
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=98.57 E-value=2.7e-07 Score=80.47 Aligned_cols=102 Identities=17% Similarity=0.193 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCcccccccccc--CCCHH
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVG--GVSNA 159 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~Vg--Gis~~ 159 (235)
.+-+|+..+....+++++++-+|..|+||+..+. .+...+.+-+-++|+.+|+|+-+-..-+-+.+..+. .++.+
T Consensus 41 ~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~---~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~ 117 (260)
T 2cch_B 41 ILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSM---SVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKK 117 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccC---CCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHH
Confidence 5779999999999999999999999999999975 345677888999999999998776555666666665 48999
Q ss_pred HHHHHHHHHHHhCCCceee-CHHHHHHH
Q 026696 160 ELNRLELELLFLLDFGVMV-SSRVFESY 186 (235)
Q Consensus 160 ELN~LE~~FL~lLdf~L~V-s~~e~~~y 186 (235)
|+-+||+.+|..|+|++.+ ++..|-.+
T Consensus 118 ~i~~mE~~iL~~L~~~l~~~tp~~fl~~ 145 (260)
T 2cch_B 118 QVLRMEHLVLKVLTFDLAAPTVNQFLTQ 145 (260)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCCCHHHHHHH
Confidence 9999999999999999986 55555443
No 7
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=98.56 E-value=3.3e-07 Score=80.41 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCcccccccccc--CCCHH
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVG--GVSNA 159 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~Vg--Gis~~ 159 (235)
.+.+|+.++....+++++++.+|..|+||+..+. .+...+.+-+-++|+.+|+|+-+-...+-+.+..+. .++.+
T Consensus 59 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~---~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~ 135 (271)
T 2w96_A 59 IVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLE---PVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPE 135 (271)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTS---CCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHH
T ss_pred HHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcC---CcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHH
Confidence 5788999999999999999999999999999875 345677889999999999998776455556666663 48999
Q ss_pred HHHHHHHHHHHhCCCceee-CHHHHHHH
Q 026696 160 ELNRLELELLFLLDFGVMV-SSRVFESY 186 (235)
Q Consensus 160 ELN~LE~~FL~lLdf~L~V-s~~e~~~y 186 (235)
|+-+||+.+|..|+|+|.+ ++..|-.+
T Consensus 136 eI~~mE~~IL~~L~~~l~~~tp~~fl~~ 163 (271)
T 2w96_A 136 ELLQMELLLVNKLKWNLAAMTPHDFIEH 163 (271)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccCCCCHHHHHHH
Confidence 9999999999999999986 66666543
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=98.55 E-value=4.2e-07 Score=79.83 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCcccccccccc--CCCHH
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVG--GVSNA 159 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~Vg--Gis~~ 159 (235)
.+.+|+..+....+++++++-.|..|+||+.... .+...+.+-+-++|+.+|+|+-+-..-+-+.+..+. .++.+
T Consensus 40 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~---~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~ 116 (269)
T 2b9r_A 40 ILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNN---SVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKH 116 (269)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTS---CCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC---CCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHH
Confidence 5888999999999999999999999999999875 356678899999999999998776455556666665 48999
Q ss_pred HHHHHHHHHHHhCCCceee-CHHHHHH
Q 026696 160 ELNRLELELLFLLDFGVMV-SSRVFES 185 (235)
Q Consensus 160 ELN~LE~~FL~lLdf~L~V-s~~e~~~ 185 (235)
|+-+||+.+|..|+|+|.+ ++..|-.
T Consensus 117 eI~~mE~~IL~~L~f~l~~~tp~~fl~ 143 (269)
T 2b9r_A 117 QIRQMEMKILRALNFGLGRPLPLHFLR 143 (269)
T ss_dssp HHHHHHHHHHHHTTSCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCCCHHHHHH
Confidence 9999999999999999986 5665543
No 9
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.54 E-value=4.7e-07 Score=80.21 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCcccccccccc--CCCHH
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVG--GVSNA 159 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~Vg--Gis~~ 159 (235)
.+.+|+..+....+++++++-+|..|+||+..... .+...+.+-+-++|+.+|+|+-+-..-+-+.+..+. .++.+
T Consensus 52 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~--~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ 129 (283)
T 1w98_B 52 ILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQE--NVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGD 129 (283)
T ss_dssp HHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCC--CCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHH
Confidence 47889999999999999999999999999998632 245678899999999999998776555666677665 48999
Q ss_pred HHHHHHHHHHHhCCCceee-CHHHHHHHHH
Q 026696 160 ELNRLELELLFLLDFGVMV-SSRVFESYCL 188 (235)
Q Consensus 160 ELN~LE~~FL~lLdf~L~V-s~~e~~~y~~ 188 (235)
|+.+||+.+|..|+|+|.+ ++..|-.++.
T Consensus 130 ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~ 159 (283)
T 1w98_B 130 EILTMELMIMKALKWRLSPLTIVSWLNVYM 159 (283)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCCCCCHHHHHHHHH
Confidence 9999999999999999986 6666755543
No 10
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.22 E-value=6.1e-06 Score=71.36 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCcccccccc---------
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYAR--------- 152 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~--------- 152 (235)
...+|+.++....+++++++-.|..|+||+..++ .+...+.+-+-++|+.+|+|+-+ ..-.-+.+..
T Consensus 43 ~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~---~~~~~~~qlv~~acL~lA~K~eE-~~~~l~d~~~~~~~~~~~~ 118 (258)
T 2i53_A 43 EGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFH---SFKQFPRYVTGACCLFLAGKVEE-TPKKCKDIIKTARSLLNDV 118 (258)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTS---CTTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC---ChhhcCHHHHHHHHHHHHHcccc-ccccHHHHHHHHHHHhchh
Confidence 3568999999999999999999999999998864 34556788888999999999866 4333333332
Q ss_pred ----ccCCCHHHHHHHHHHHHHhCCCceee-CHHHHH
Q 026696 153 ----VGGVSNAELNRLELELLFLLDFGVMV-SSRVFE 184 (235)
Q Consensus 153 ----VgGis~~ELN~LE~~FL~lLdf~L~V-s~~e~~ 184 (235)
.|.-+.+++-+||+.+|..|+|+|.+ ++..|-
T Consensus 119 ~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl 155 (258)
T 2i53_A 119 QFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFL 155 (258)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHH
Confidence 23335789999999999999999997 555553
No 11
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=98.15 E-value=1e-05 Score=69.29 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCccccc-chhHHHHHHHHHhhcccccCCCcccccccccc-----
Q 026696 81 ISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVS-LNVHRLLVTSVMVASKTMDDVHYNNAFYARVG----- 154 (235)
Q Consensus 81 isi~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~-~n~hRL~ltal~lAsK~ldD~~~~N~~~a~Vg----- 154 (235)
....++|.++....+++++++-.|..|+||+..++. +.. .+.+-+.++|+.+|+|+-+ ....-+.+..+.
T Consensus 29 ~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~---~~~~~~~~lv~~acL~lA~K~Ee-~~~~l~d~~~~~~~~~~ 104 (235)
T 1zp2_A 29 IYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKN---EEKGFSLEALVATCIYLSCKVEE-CPVHIRTICNEANDLWS 104 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC---SCCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc---cccccCHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHcc
Confidence 456789999999999999999999999999998752 344 6788999999999999765 444545555443
Q ss_pred ---CCCHHHHHHHHHHHHHhCCCceee-CHHHH
Q 026696 155 ---GVSNAELNRLELELLFLLDFGVMV-SSRVF 183 (235)
Q Consensus 155 ---Gis~~ELN~LE~~FL~lLdf~L~V-s~~e~ 183 (235)
.++.+++-+||+.+|..|+|++.+ ++..|
T Consensus 105 ~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~ 137 (235)
T 1zp2_A 105 LKVKLSRSNISEIEFEIISVLDAFLIVHHPYTS 137 (235)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHH
T ss_pred chhhccHHHHHHHHHHHHHHCCCcEEecChHHH
Confidence 579999999999999999999997 45555
No 12
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=98.09 E-value=1.7e-05 Score=68.75 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCcccccccccc-------
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVG------- 154 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~Vg------- 154 (235)
...+|+.++....+++++++-.|..|+||+..++ .+...+.+-+-++|+.+|+|+-+. .-.-+.+..+.
T Consensus 33 ~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~---~~~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~~~~~~~ 108 (257)
T 2ivx_A 33 QAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHH---SFTKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAHACLHPL 108 (257)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTS---CTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhC---ChhhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHHHHhccC
Confidence 3678899999999999999999999999998864 345677889999999999998664 44444444332
Q ss_pred ----C-----CC--HHHHHHHHHHHHHhCCCceee-CHHHHH
Q 026696 155 ----G-----VS--NAELNRLELELLFLLDFGVMV-SSRVFE 184 (235)
Q Consensus 155 ----G-----is--~~ELN~LE~~FL~lLdf~L~V-s~~e~~ 184 (235)
. +. .+++-.||+.+|..|+|+|.+ ++..|-
T Consensus 109 ~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl 150 (257)
T 2ivx_A 109 EPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDV 150 (257)
T ss_dssp SCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHH
Confidence 1 12 899999999999999999997 555553
No 13
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=98.00 E-value=4.1e-05 Score=67.75 Aligned_cols=106 Identities=17% Similarity=0.118 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccc--------
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARV-------- 153 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~V-------- 153 (235)
-..+||.++....+++.+++-.|.+|+||+..++ .+...+.+-+.++|+.+|+|+-+-..-+.+....+
T Consensus 45 ~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~---s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~ 121 (285)
T 3rgf_B 45 FFTNVIQALGEHLKLRQQVIATATVYFKRFYARY---SLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTR 121 (285)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHS---CTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhC---CchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHccc
Confidence 3578999999999999999999999999999874 24567888999999999999755433222222111
Q ss_pred --------cCCCHHHHHHHHHHHHHhCCCceee-CHHHH-HHHHHHH
Q 026696 154 --------GGVSNAELNRLELELLFLLDFGVMV-SSRVF-ESYCLHL 190 (235)
Q Consensus 154 --------gGis~~ELN~LE~~FL~lLdf~L~V-s~~e~-~~y~~~L 190 (235)
...+.+++-+||+.+|..|+|+|.| ++..| ..|+..+
T Consensus 122 ~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l 168 (285)
T 3rgf_B 122 FSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDM 168 (285)
T ss_dssp CTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHH
T ss_pred ccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHh
Confidence 1257899999999999999999987 44444 4454444
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=97.95 E-value=6.7e-05 Score=67.66 Aligned_cols=104 Identities=17% Similarity=0.226 Sum_probs=80.1
Q ss_pred HHHHHHHHHHcC--CChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCCC----
Q 026696 84 AKYLERIYKYTN--CSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGVS---- 157 (235)
Q Consensus 84 ~~yl~rI~~~~~--~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGis---- 157 (235)
.++|.++....+ ++..++-.|.+|+||+..++. +...+.+-+.+||+.+|+|+=+ ...+-+.+..+...+
T Consensus 61 ~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s---~~~~~~~lva~acLfLA~K~EE-~~~~l~d~v~~~~~~p~~~ 136 (323)
T 1jkw_A 61 EKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNS---VMEYHPRIIMLTCAFLACKVDE-FNVSSPQFVGNLRESPLGQ 136 (323)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSC---TTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHGGGSSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCC---hhhcCHHHHHHHHHHHHHhhhc-CCCCHHHHHHHhccChhhh
Confidence 366888888889 999999999999999998752 4557889999999999999755 444555555443223
Q ss_pred ---HHHHHHHHHHHHHhCCCceee-CHHHH-HHHHHHHH
Q 026696 158 ---NAELNRLELELLFLLDFGVMV-SSRVF-ESYCLHLE 191 (235)
Q Consensus 158 ---~~ELN~LE~~FL~lLdf~L~V-s~~e~-~~y~~~L~ 191 (235)
.+++-.||+.+|..|+|+|.| .+..| ..|...+.
T Consensus 137 ~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~ 175 (323)
T 1jkw_A 137 EKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLK 175 (323)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHH
Confidence 689999999999999999997 44444 44555553
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.81 E-value=0.00014 Score=60.88 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCCCHHHHH
Q 026696 83 IAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGVSNAELN 162 (235)
Q Consensus 83 i~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGis~~ELN 162 (235)
-.++|.++....+++..+.-.|..|++|+...+. +...+..-+..+|+-+|+|.-+ ...+-+.++.+.+++.+++.
T Consensus 8 a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~---~~~~~~~~v~aaclylAcK~ee-~p~~l~di~~~~~~~~~~i~ 83 (207)
T 1c9b_A 8 AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKS---LKGRANDAIASACLYIACRQEG-VPRTFKEICAVSRISKKEIG 83 (207)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTC---STTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC---cCCCCHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHCCCHHHHH
Confidence 4568899999999999999999999999998742 3456788899999999999754 57788889999999999999
Q ss_pred HHHHHHHHhCCCceee-CHH-HHHHHHHHH
Q 026696 163 RLELELLFLLDFGVMV-SSR-VFESYCLHL 190 (235)
Q Consensus 163 ~LE~~FL~lLdf~L~V-s~~-e~~~y~~~L 190 (235)
++|+.+|+.|+|++.+ .+. ...+|+..|
T Consensus 84 ~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l 113 (207)
T 1c9b_A 84 RCFKLILKALETSVDLITTGDFMSRFCSNL 113 (207)
T ss_dssp HHHHHHHHHTTCCCCCCCTHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCcCcCCHHHHHHHHHHHC
Confidence 9999999999999976 333 335555444
No 16
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=97.80 E-value=1.8e-05 Score=72.60 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccC------
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGG------ 155 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgG------ 155 (235)
...+||.++....+++.+++-.|.+|+||+...+ .+...+.+-+.++||.||+|+-+. .-.-+.+..+..
T Consensus 40 ~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~---sv~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~~~~~~~ 115 (358)
T 2pk2_A 40 QAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQ---SFTRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAHTCLHPQ 115 (358)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTS---CTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHHHHHCSS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CcccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHHhccc
Confidence 3678899999999999999999999999998864 345678889999999999998664 333333433220
Q ss_pred ----------C--CHHHHHHHHHHHHHhCCCceee-CHHHH
Q 026696 156 ----------V--SNAELNRLELELLFLLDFGVMV-SSRVF 183 (235)
Q Consensus 156 ----------i--s~~ELN~LE~~FL~lLdf~L~V-s~~e~ 183 (235)
+ ..+++-.||+.+|..|+|+|.+ ++..|
T Consensus 116 ~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~f 156 (358)
T 2pk2_A 116 ESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTH 156 (358)
T ss_dssp SCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHH
T ss_pred cccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHH
Confidence 1 2678999999999999999997 44444
No 17
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=97.22 E-value=0.001 Score=55.10 Aligned_cols=105 Identities=12% Similarity=0.082 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCCCHHHH
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGVSNAEL 161 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGis~~EL 161 (235)
.-.+++.++....++++.+.=.|..|++|+.... .+...+..-+..+|+-+|+|..+ ...+-+..+.+.|++.+++
T Consensus 11 ~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~---~~~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~v~~~~i 86 (200)
T 1ais_B 11 FALSELDRITAQLKLPRHVEEEAARLYREAVRKG---LIRGRSIESVMAACVYAACRLLK-VPRTLDEIADIARVDKKEI 86 (200)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTT---TTTTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC---CcCCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHCCCHHHH
Confidence 4677899999999999999999999999998863 23445678889999999999755 6788888999999999999
Q ss_pred HHHHHHHHHhCCCceee---CHHHH-HHHHHHH
Q 026696 162 NRLELELLFLLDFGVMV---SSRVF-ESYCLHL 190 (235)
Q Consensus 162 N~LE~~FL~lLdf~L~V---s~~e~-~~y~~~L 190 (235)
...++.++..|+|++.+ ++..| .+|+..|
T Consensus 87 ~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L 119 (200)
T 1ais_B 87 GRSYRFIARNLNLTPKKLFVKPTDYVNKFADEL 119 (200)
T ss_dssp HHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHc
Confidence 99999999999999874 45544 5666555
No 18
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.039 Score=49.92 Aligned_cols=106 Identities=8% Similarity=0.050 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCCCHHHH
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGVSNAEL 161 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGis~~EL 161 (235)
....+|.++....+++..+.=.|..|+.|+.... .+...+..-+..+|+.+|.| .+....+-+.++.+.+++.+|+
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~---~~kgr~~~~vaaAclyiAcR-~e~~prtl~ei~~~~~v~~keI 203 (345)
T 3k7a_M 128 AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEK---TLKGKSMESIMAASILIGCR-RAEVARTFKEIQSLIHVKTKEF 203 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSC---SSCCCCSHHHHTTTTTTTSB-TTBSSCCHHHHHHSSSCCSHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---cccCCcHHHHHHHHHHHHHH-HcCCCccHHHHHHHHCCCHHHH
Confidence 4567888999999999999999999999987742 23445677888999999999 4566778888899999999999
Q ss_pred HHHHHHHHHhCC------------Cceee-CHHHH-HHHHHHHH
Q 026696 162 NRLELELLFLLD------------FGVMV-SSRVF-ESYCLHLE 191 (235)
Q Consensus 162 N~LE~~FL~lLd------------f~L~V-s~~e~-~~y~~~L~ 191 (235)
.+.++.+++.|+ +++.+ ++..| .+|+..|.
T Consensus 204 gr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~ 247 (345)
T 3k7a_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLG 247 (345)
T ss_dssp HHHHHHHHHHHTCC------------------------------
T ss_pred HHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcC
Confidence 999999999998 76654 45544 45665553
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=91.94 E-value=0.37 Score=39.43 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=76.7
Q ss_pred CCCc--hhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCcccccccccc
Q 026696 77 RAPN--ISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVG 154 (235)
Q Consensus 77 ~~P~--isi~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~Vg 154 (235)
..|. +.-.+|+.|+.+..+++.++.-.|..++.+.... ++ ....+..-+-.+|+-+|++..+ ...+.+.++.+.
T Consensus 100 ~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~--~~-~~gr~P~~iAaAaly~A~~~~~-~~~t~~ei~~~~ 175 (200)
T 1ais_B 100 TPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKR--GL-TSGKSPAGLVAAALYIASLLEG-EKRTQREVAEVA 175 (200)
T ss_dssp CTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHT--TC-CTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHH
T ss_pred cCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--Cc-ccCCCHHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 3455 6788999999999999999988898888887764 22 3457788899999999999765 445778889999
Q ss_pred CCCHHHHHHHHHHHHHhCCCce
Q 026696 155 GVSNAELNRLELELLFLLDFGV 176 (235)
Q Consensus 155 Gis~~ELN~LE~~FL~lLdf~L 176 (235)
|++..++..-=+++...++.++
T Consensus 176 ~vs~~ti~~~~~~l~~~l~~~~ 197 (200)
T 1ais_B 176 RVTEVTVRNRYKELVEKLKIKV 197 (200)
T ss_dssp TCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCC
Confidence 9999999988888888777543
No 20
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=88.91 E-value=1.1 Score=36.83 Aligned_cols=88 Identities=9% Similarity=0.078 Sum_probs=68.0
Q ss_pred CchhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCCCH
Q 026696 79 PNISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGVSN 158 (235)
Q Consensus 79 P~isi~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGis~ 158 (235)
|...-.+|+.|+.+..+++.++.-.|...+.+.... ++ ......+-+-.+|+-+|++..+ ...+.+.|+.+.|++.
T Consensus 98 ~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~--~l-~~g~~P~~IAaAaiylA~~~~~-~~~~~~~i~~~~~v~~ 173 (207)
T 1c9b_A 98 DLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVEL--DL-VPGRSPISVAAAAIYMASQASA-EKRTQKEIGDIAGVAD 173 (207)
T ss_dssp CCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT--TC-STTCCHHHHHHHHHHHHHHTSS-SCCCHHHHHHHHTCCH
T ss_pred CcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc--Cc-cCCCChHHHHHHHHHHHHHHHC-CCCCHHHHHHHhCCCH
Confidence 445678999999999999998888887777776653 22 3457888999999999999775 4567778999999998
Q ss_pred HHHHHHHHHHHH
Q 026696 159 AELNRLELELLF 170 (235)
Q Consensus 159 ~ELN~LE~~FL~ 170 (235)
.++..-=++++.
T Consensus 174 ~tI~~~~~~l~~ 185 (207)
T 1c9b_A 174 VTIRQSYRLIYP 185 (207)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHHHHH
Confidence 888766555444
No 21
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=86.98 E-value=1.1 Score=40.37 Aligned_cols=107 Identities=7% Similarity=0.046 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCCCHHH
Q 026696 81 ISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGVSNAE 160 (235)
Q Consensus 81 isi~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGis~~E 160 (235)
..-...|.++....+++..+.=.|..+..|+.... .+...+..-+..+|+-+|.|. .....+-+..+.+.+++.+|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~---~~rGrs~e~vaAAclYiACR~-~~~prtl~eI~~~~~v~~ke 202 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEK---TLKGKSMESIMAASILIGCRR-AEVARTFKEIQSLIHVKTKE 202 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT---TTTTCCHHHHHHHHHHHHHHH-TCCBCCHHHHHHHHTCCTTH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CccCCCHHHHHHHHHHHHHHh-cCCCccHHHHHHHhCCCHHH
Confidence 35677899999999999999999999888887642 234467788999999999994 56777888888999999999
Q ss_pred HHHHHHHHHHhCCCc------------e-eeCHHHH-HHHHHHHH
Q 026696 161 LNRLELELLFLLDFG------------V-MVSSRVF-ESYCLHLE 191 (235)
Q Consensus 161 LN~LE~~FL~lLdf~------------L-~Vs~~e~-~~y~~~L~ 191 (235)
|.+..+.+++.|+.. + .+++++| .+|+..|.
T Consensus 203 igr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~ 247 (345)
T 4bbr_M 203 FGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLG 247 (345)
T ss_dssp HHHHHHHHHHCC---------------------------------
T ss_pred HHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcC
Confidence 999999999999864 1 2355555 56666553
No 22
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=70.37 E-value=24 Score=29.50 Aligned_cols=88 Identities=11% Similarity=0.085 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHcCCCh----hhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCC-C-----cccccccc
Q 026696 83 IAKYLERIYKYTNCSP----SCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDV-H-----YNNAFYAR 152 (235)
Q Consensus 83 i~~yl~rI~~~~~~s~----~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~-~-----~~N~~~a~ 152 (235)
-.+|+.++.+..+.+. .+.-.|..+++..... . ..-....+-+-++|+.+|.+.++-. . .....|-.
T Consensus 151 P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~--~-~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~ 227 (258)
T 2i53_A 151 PYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCT--T-LSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWE 227 (258)
T ss_dssp HHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTT--T-GGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGG
T ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcC--C-chhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHH
Confidence 6789999999888887 4566666666665442 2 2234677889999999999987632 1 12234555
Q ss_pred c--cCCCHHHHHHHHHHHHHhCC
Q 026696 153 V--GGVSNAELNRLELELLFLLD 173 (235)
Q Consensus 153 V--gGis~~ELN~LE~~FL~lLd 173 (235)
. .|++..++...-.+++.+.+
T Consensus 228 ~~~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 228 QFVQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp GTSSSCCHHHHHHHHHHHHTTTS
T ss_pred HhccCCCHHHHHHHHHHHHHHHh
Confidence 3 59999999999999988754
No 23
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=69.92 E-value=10 Score=32.81 Aligned_cols=96 Identities=7% Similarity=0.007 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCCCHHHHH
Q 026696 83 IAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGVSNAELN 162 (235)
Q Consensus 83 i~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGis~~ELN 162 (235)
-.+|+.++++..+.+....-.|..++...... .. .-....+-+-++|+.+|.+.+... ...|-.+.|++.+++.
T Consensus 157 P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t--~~-~l~~~Ps~IAaAaiylA~~~~~~~---~~~W~~~~~~~~~~l~ 230 (285)
T 3rgf_B 157 PYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRT--DL-CLLYPPFMIALACLHVACVVQQKD---ARQWFAELSVDMEKIL 230 (285)
T ss_dssp SHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SH-HHHSCHHHHHHHHHHHHHHHTTCC---CHHHHHTSCSCHHHHH
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc--Ch-hhccCHHHHHHHHHHHHHHHcCCC---hhhHHHHHCCCHHHHH
Confidence 36888888888888888888887777765432 22 223567888999999999988643 2578888999999999
Q ss_pred HHHHHHHHhC-CCceeeCHHHHH
Q 026696 163 RLELELLFLL-DFGVMVSSRVFE 184 (235)
Q Consensus 163 ~LE~~FL~lL-df~L~Vs~~e~~ 184 (235)
..-.+++.+. .|+-+-..+++.
T Consensus 231 ~~~~~il~ly~~~~~~~~~~~~~ 253 (285)
T 3rgf_B 231 EIIRVILKLYEQWKNFDERKEMA 253 (285)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHhcccCchhhhHH
Confidence 9999999874 344443444443
No 24
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=67.36 E-value=35 Score=28.53 Aligned_cols=89 Identities=13% Similarity=0.075 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCC-Cc--cccccccc--cCC
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDV-HY--NNAFYARV--GGV 156 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~-~~--~N~~~a~V--gGi 156 (235)
.-..|+.++.+..+.+....-.|..++....... +..+ ....+-+-++|+.+|.+.++-. .. ....|... .|+
T Consensus 145 ~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~-~~~l-~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~ 222 (257)
T 2ivx_A 145 HPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLT-TFCL-QYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTV 222 (257)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-CGGG-TSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSC
T ss_pred CcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcc-cHHH-cCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCC
Confidence 3678999999999999888777877775544322 2222 3567888899999999987632 11 23457764 479
Q ss_pred CHHHHHHHHHHHHHhC
Q 026696 157 SNAELNRLELELLFLL 172 (235)
Q Consensus 157 s~~ELN~LE~~FL~lL 172 (235)
+..++...-.+++...
T Consensus 223 ~~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 223 TLELLDELTHEFLQIL 238 (257)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988754
No 25
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=61.94 E-value=1.6 Score=39.10 Aligned_cols=90 Identities=8% Similarity=-0.052 Sum_probs=0.0
Q ss_pred CCCchhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCC
Q 026696 77 RAPNISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGV 156 (235)
Q Consensus 77 ~~P~isi~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGi 156 (235)
..|.+...+|+.|+.+..+++.++.-.|.-++.+.... . .....+.+-+-.+||.+|++.++. ..+.+.|+++.||
T Consensus 229 ~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~--~-l~~Gr~P~~IAaAaIylAa~~~~~-~~t~~eIa~~~~V 304 (345)
T 3k7a_M 229 NMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEI--K-EIAGKSPITIAVVSIYLNILLFQI-PITAAKVGQTLQV 304 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh--c-hhcCCCHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHCC
Confidence 34555666788888888888777777777777666553 2 234567778889999999998763 4467889999999
Q ss_pred CHHHHHHHHHHHHH
Q 026696 157 SNAELNRLELELLF 170 (235)
Q Consensus 157 s~~ELN~LE~~FL~ 170 (235)
+...+..-=.+++.
T Consensus 305 se~TIr~~ykel~~ 318 (345)
T 3k7a_M 305 TEGTIKSGYKILYE 318 (345)
T ss_dssp --------------
T ss_pred CHHHHHHHHHHHHH
Confidence 87776644334443
No 26
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=59.10 E-value=22 Score=31.96 Aligned_cols=89 Identities=13% Similarity=0.085 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCC-C--ccccccccc--cCCC
Q 026696 83 IAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDV-H--YNNAFYARV--GGVS 157 (235)
Q Consensus 83 i~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~-~--~~N~~~a~V--gGis 157 (235)
-..||.++++..+.+.+..-.|..++...... ..+. -....+-+-++|+.+|.++++-. . -....|..+ .+++
T Consensus 153 P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~-t~l~-l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt 230 (358)
T 2pk2_A 153 PHTHVVKCTQLVRASKDLAQTSYFMATNSLHL-TTFS-LQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVT 230 (358)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTT-SCGG-GTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-Ccch-hccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCC
Confidence 45788888888888888877787777554422 2222 23567788888899999988632 1 123567765 3789
Q ss_pred HHHHHHHHHHHHHhCC
Q 026696 158 NAELNRLELELLFLLD 173 (235)
Q Consensus 158 ~~ELN~LE~~FL~lLd 173 (235)
..+|...-.+++.+++
T Consensus 231 ~~~l~~i~~~il~~y~ 246 (358)
T 2pk2_A 231 LELLDELTHEFLQILE 246 (358)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998763
No 27
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=56.39 E-value=23 Score=29.76 Aligned_cols=87 Identities=6% Similarity=-0.053 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHcCCChhhH----HHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCcc----ccccccc
Q 026696 82 SIAKYLERIYKYTNCSPSCF----VVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYN----NAFYARV 153 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~----v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~----N~~~a~V 153 (235)
+-.+|+.++.+..+.+.+.. -.|..+++ +... +...-.....-+-.+|+.+|.+...+..++ ....+.+
T Consensus 151 tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~-~~l~--d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~ 227 (254)
T 2f2c_A 151 LATDFLIPLCNALKIPEDLWPQLYEAASTTIC-KALI--QPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSI 227 (254)
T ss_dssp CGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHH-HHTT--SGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCChhhHHHHHHHHHHHHH-HHHc--CcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Confidence 46789999999888887652 13444444 2222 222334566778888899999885333332 3333456
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 026696 154 GGVSNAELNRLELELLFL 171 (235)
Q Consensus 154 gGis~~ELN~LE~~FL~l 171 (235)
.|++..++...=..+..+
T Consensus 228 tg~~~~~l~~c~~~i~~~ 245 (254)
T 2f2c_A 228 LNFSTNTVRTVKDQVSEA 245 (254)
T ss_dssp HTCCHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHH
Confidence 788877777665555544
No 28
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=49.59 E-value=20 Score=29.70 Aligned_cols=82 Identities=5% Similarity=0.020 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCC-ccccccccccCCCHHHH
Q 026696 83 IAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVH-YNNAFYARVGGVSNAEL 161 (235)
Q Consensus 83 i~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~-~~N~~~a~VgGis~~EL 161 (235)
-.+|+.++.+..+.+.+..-.|..++...... .. .-.....-+-++|+.+|.+..+... -....|+ |++..++
T Consensus 134 P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~--~~-~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~---~~~~~~i 207 (235)
T 1zp2_A 134 PYTSLEQAFHDGIINQKQLEFAWSIVNDSYAS--SL-CLMAHPHQLAYAALLISCCNDENTIPKLLDLIK---STDAFKV 207 (235)
T ss_dssp THHHHHHHHHTTSSCHHHHHHHHHHHHHHTTT--TG-GGTSCHHHHHHHHHHHHHTSCTTHHHHHHHHCC---HHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--Cc-hhccCHHHHHHHHHHHHHHhcCCCCCCCcchhh---cCCHHHH
Confidence 56788888888888988888888888776442 22 2346778899999999999765321 0111121 5555555
Q ss_pred HHHHHHHHH
Q 026696 162 NRLELELLF 170 (235)
Q Consensus 162 N~LE~~FL~ 170 (235)
...=.+++.
T Consensus 208 ~~~~~~i~~ 216 (235)
T 1zp2_A 208 ILCVQRIIS 216 (235)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555454444
No 29
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=49.30 E-value=18 Score=30.80 Aligned_cols=84 Identities=11% Similarity=0.029 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCCCHHHH
Q 026696 82 SIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGVSNAEL 161 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGis~~EL 161 (235)
+-.+|+.|+.+..+.+....-.|..+++.-... . ..-.....-+-.+|+.+|.+.++.. -+++..+.+.|++..++
T Consensus 137 tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~-~--~~~~~~Ps~iAaAai~lA~~~l~~~-~w~~~l~~~tg~~~~~l 212 (269)
T 2b9r_A 137 LPLHFLRRASKIGEVDVEQHTLAKYLMELTMLD-Y--DMVHFPPSQIAAGAFSLALKILDNG-EWTPTLQHYLSYTEESL 212 (269)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGC-G--GGSSSCTTHHHHHHHHHHHHHHTCC-CSCTTHHHHSCCCSSTT
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-h--hhhcCCHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHCCCHHHH
Confidence 467899999999998888777777777655432 2 2234566788888999999888754 23444455678876665
Q ss_pred HHHHHHHH
Q 026696 162 NRLELELL 169 (235)
Q Consensus 162 N~LE~~FL 169 (235)
...=..++
T Consensus 213 ~~~~~~l~ 220 (269)
T 2b9r_A 213 LPVMQHLA 220 (269)
T ss_dssp TTHHHHHH
T ss_pred HHHHHHHH
Confidence 54433333
No 30
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=47.27 E-value=41 Score=28.29 Aligned_cols=86 Identities=10% Similarity=0.027 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHcCCCh-hhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCCCHHH
Q 026696 82 SIAKYLERIYKYTNCSP-SCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGVSNAE 160 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~-~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGis~~E 160 (235)
+-.+|+.++.+..+.+. .+.-+|..+++.-.. ... ..-.....-+-.+|+.+|.+.++.. .++...+.+.|++..+
T Consensus 138 tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~-~~~-~~~~~~Ps~iAaAai~lA~~~~~~~-~w~~~l~~~~g~~~~~ 214 (260)
T 2cch_B 138 TVNQFLTQYFLHQQPANCKVESLAMFLGELSLI-DAD-PYLKYLPSVIAGAAFHLALYTVTGQ-SWPESLIRKTGYTLES 214 (260)
T ss_dssp CHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-CHH-HHTTSCHHHHHHHHHHHHHHHHHSC-CSCHHHHHHHCCCHHH
T ss_pred CHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH-hHH-HHhCCCHHHHHHHHHHHHHHHhCCC-cchHHHHHHhCcCHHH
Confidence 58899999999998776 566666666654222 111 0233556678888889999887652 2233334456777777
Q ss_pred HHHHHHHHHH
Q 026696 161 LNRLELELLF 170 (235)
Q Consensus 161 LN~LE~~FL~ 170 (235)
+...=..++.
T Consensus 215 i~~~~~~l~~ 224 (260)
T 2cch_B 215 LKPCLMDLHQ 224 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6655444444
No 31
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=46.96 E-value=77 Score=26.47 Aligned_cols=86 Identities=10% Similarity=-0.047 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHcCCChhhH----HHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCC-Cccccccc----c
Q 026696 82 SIAKYLERIYKYTNCSPSCF----VVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDV-HYNNAFYA----R 152 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~----v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~-~~~N~~~a----~ 152 (235)
+-.+|+.++++..+.+.+.. -.|..+++.-. . +...-.....-+-++|+.+|.+.++-. ......|. +
T Consensus 150 tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l-~--d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~ 226 (257)
T 1g3n_C 150 LATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKAL-V--DPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLAS 226 (257)
T ss_dssp CHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHH-T--STTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHH
T ss_pred CHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH-h--CcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHH
Confidence 58899999999988877652 23444554322 2 222334567788888899999988621 11112343 3
Q ss_pred ccCCCHHHHHHHHHHHHH
Q 026696 153 VGGVSNAELNRLELELLF 170 (235)
Q Consensus 153 VgGis~~ELN~LE~~FL~ 170 (235)
+.|++..++...=..+..
T Consensus 227 ~t~~~~~~l~~c~~~i~~ 244 (257)
T 1g3n_C 227 ILGCDVSVLQAAVEQILT 244 (257)
T ss_dssp HHTCCHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHH
Confidence 456766666555444443
No 32
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=46.15 E-value=44 Score=29.07 Aligned_cols=87 Identities=9% Similarity=0.020 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHcCCChhhH----HHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccc----cc
Q 026696 82 SIAKYLERIYKYTNCSPSCF----VVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYA----RV 153 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~----v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a----~V 153 (235)
+..+|+.++++..+.+.... -.|..+++ +... ....-.....-+-++|+.+|.+.++....+...|. ++
T Consensus 170 tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~-lsl~--d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~ 246 (306)
T 3g33_B 170 IAHDFLAFILHRLSLPRDRQALVKKHAQTFLA-LCAT--DYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGI 246 (306)
T ss_dssp CGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHH-HHHH--CGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH-HHHh--hhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Confidence 36678888888887765532 23444444 2222 12223455677888899999999987655544553 45
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 026696 154 GGVSNAELNRLELELLFL 171 (235)
Q Consensus 154 gGis~~ELN~LE~~FL~l 171 (235)
.|++..++...-..++.+
T Consensus 247 tg~~~~~l~~c~~~I~~l 264 (306)
T 3g33_B 247 TGTEVDCLRACQEQIEAA 264 (306)
T ss_dssp HTCCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 677777766655444443
No 33
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=46.03 E-value=4.3 Score=36.53 Aligned_cols=92 Identities=8% Similarity=-0.041 Sum_probs=0.0
Q ss_pred CCCchhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhcccccCCCccccccccccCC
Q 026696 77 RAPNISIAKYLERIYKYTNCSPSCFVVGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMDDVHYNNAFYARVGGV 156 (235)
Q Consensus 77 ~~P~isi~~yl~rI~~~~~~s~~~~v~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ldD~~~~N~~~a~VgGi 156 (235)
..|.+...+|+.|+....+++.++.-.|.-.+++.... . .....+..-+-.+||.+|+..++ ...+.+.-+++.||
T Consensus 229 ~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~--~-i~~GR~P~~IAAAaIylAa~l~g-~~~t~~eIa~v~~V 304 (345)
T 4bbr_M 229 NMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEI--K-EIAGKSPITIAVVSIYLNILLFQ-IPITAAKVGQTLQV 304 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--c-cccCCChHHHHHHHHHHHHHHhC-CCCCHHHHHHHHCC
Confidence 36778888999999999999999888888888777663 2 23456777888999999999765 34577888888998
Q ss_pred CHHHHHHHHHHHHHhC
Q 026696 157 SNAELNRLELELLFLL 172 (235)
Q Consensus 157 s~~ELN~LE~~FL~lL 172 (235)
+..-+..-=.+|+..+
T Consensus 305 se~TIr~rykel~~~~ 320 (345)
T 4bbr_M 305 TEGTIKSGYKILYEHR 320 (345)
T ss_dssp ----------------
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8776665544554443
No 34
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=27.50 E-value=1.4e+02 Score=25.08 Aligned_cols=57 Identities=12% Similarity=0.111 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHcCCChhhHH----HHHHHHHHHHhhCCCcccccchhHHHHHHHHHhhccccc
Q 026696 82 SIAKYLERIYKYTNCSPSCFV----VGYVYIDRLLHRHPDSLVVSLNVHRLLVTSVMVASKTMD 141 (235)
Q Consensus 82 si~~yl~rI~~~~~~s~~~~v----~ALiYldRl~~~~~~~~l~~~n~hRL~ltal~lAsK~ld 141 (235)
+-.+|+.++++..+.+....- .|..+++ +... +...-.....-+-.+|+.+|.+.++
T Consensus 156 tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~-~~~~--d~~~~~~~PS~iAaAai~lA~~~l~ 216 (271)
T 2w96_A 156 TPHDFIEHFLSKMPEAEENKQIIRKHAQTFVA-LCAT--DVKFISNPPSMVAAGSVVAAVQGLN 216 (271)
T ss_dssp CHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HHHT--STHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HHHh--hhhhhccCHHHHHHHHHHHHHHHhC
Confidence 588999999999988876531 2444444 2222 2222345566777788888887664
Done!