BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026697
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
Length = 233
Score = 243 bits (621), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 119/215 (55%), Positives = 150/215 (69%), Gaps = 9/215 (4%)
Query: 21 EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 77
E+W V +SW PRAF+ NFLS EEC+Y++ A P M KS+VVD+++GKS DS +RTS
Sbjct: 16 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 75
Query: 78 SGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT-- 135
+GT+ A A T PLEN EGLQVLHY GQKYEPH+DYF D N
Sbjct: 76 TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 135
Query: 136 KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALL 195
++GGQR+ T+LMYL+ VEEGGETV PNA+ ++ W SEC K GL++KP GDAL+
Sbjct: 136 EHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALM 191
Query: 196 FWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 230
F+S+KPD S DP+SLHG CP +KG+KWS+TKWI V
Sbjct: 192 FYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
Length = 225
Score = 243 bits (621), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 119/215 (55%), Positives = 150/215 (69%), Gaps = 9/215 (4%)
Query: 21 EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 77
E+W V +SW PRAF+ NFLS EEC+Y++ A P M KS+VVD+++GKS DS +RTS
Sbjct: 8 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 67
Query: 78 SGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT-- 135
+GT+ A A T PLEN EGLQVLHY GQKYEPH+DYF D N
Sbjct: 68 TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 127
Query: 136 KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALL 195
++GGQR+ T+LMYL+ VEEGGETV PNA+ ++ W SEC K GL++KP GDAL+
Sbjct: 128 EHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALM 183
Query: 196 FWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 230
F+S+KPD S DP+SLHG CP +KG+KWS+TKWI V
Sbjct: 184 FYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 218
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
Length = 224
Score = 243 bits (620), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 119/215 (55%), Positives = 150/215 (69%), Gaps = 9/215 (4%)
Query: 21 EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 77
E+W V +SW PRAF+ NFLS EEC+Y++ A P M KS+VVD+++GKS DS +RTS
Sbjct: 7 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 66
Query: 78 SGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT-- 135
+GT+ A A T PLEN EGLQVLHY GQKYEPH+DYF D N
Sbjct: 67 TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 126
Query: 136 KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALL 195
++GGQR+ T+LMYL+ VEEGGETV PNA+ ++ W SEC K GL++KP GDAL+
Sbjct: 127 EHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALM 182
Query: 196 FWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 230
F+S+KPD S DP+SLHG CP +KG+KWS+TKWI V
Sbjct: 183 FYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 217
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii
Length = 233
Score = 235 bits (600), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 117/215 (54%), Positives = 146/215 (67%), Gaps = 9/215 (4%)
Query: 21 EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 77
E+W V +SW PRAF+ NFLS EEC+Y++ A P KS+VVD+++GKS DS +RTS
Sbjct: 16 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKXVKSSVVDNESGKSVDSEIRTS 75
Query: 78 SGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT-- 135
+GT+ A A T PLEN EGLQVLHY GQKYEPH+DYF D N
Sbjct: 76 TGTWFAKGEDSVISKIEKRVAQVTXIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 135
Query: 136 KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALL 195
++GGQR+ T L YL+ VEEGGETV PNA+ ++ W SEC K GL++KP GDAL
Sbjct: 136 EHGGQRVVTXLXYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALX 191
Query: 196 FWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 230
F+S+KPD S DP+SLHG CP +KG+KWS+TKWI V
Sbjct: 192 FYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 113/217 (52%), Gaps = 30/217 (13%)
Query: 21 EQWVEVISW--EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKD-SRVRTS 77
++ +++IS EP V N LS EEC+ LI L+ KS + S G S+D + +RTS
Sbjct: 27 DREIQIISKFEEPLIVVLGNVLSDEECDELIELS-----KSKLARSKVGSSRDVNDIRTS 81
Query: 78 SGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKN 137
SG FL + P +GEGL +L+YE Q+Y+ H+DYF E +
Sbjct: 82 SGAFL--DDNELTAKIEKRISSIXNVPASHGEGLHILNYEVDQQYKAHYDYFA-EHSRSA 138
Query: 138 GGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFW 197
R++T++ YL+DVEEGGET FP K LS+ P+ G A+ F
Sbjct: 139 ANNRISTLVXYLNDVEEGGETFFP-------------------KLNLSVHPRKGXAVYFE 179
Query: 198 SMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYK 234
D SL+ +LHGG PV KG KW +T+W+R YK
Sbjct: 180 YFYQDQSLNELTLHGGAPVTKGEKWIATQWVRRGTYK 216
>pdb|3AHQ|A Chain A, Hyperactive Human Ero1
Length = 465
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 171 PWWNELSECGKTGLSIKPKMGDAL 194
P+WN++S+CG+ ++KP D +
Sbjct: 83 PFWNDISQCGRRDCAVKPAQSDEV 106
>pdb|3AHR|A Chain A, Inactive Human Ero1
Length = 465
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 171 PWWNELSECGKTGLSIKPKMGDAL 194
P+WN++S+CG+ ++KP D +
Sbjct: 83 PFWNDISQCGRRDAAVKPAQSDEV 106
>pdb|2XZM|7 Chain 7, Crystal Structure Of The Eukaryotic 40s Ribosomal
Subunit In Complex With Initiation Factor 1. This File
Contains The 40s Subunit And Initiation Factor For
Molecule 1
pdb|2XZN|7 Chain 7, Crystal Structure Of The Eukaryotic 40s Ribosomal
Subunit In Complex With Initiation Factor 1. This File
Contains The 40s Subunit And Initiation Factor For
Molecule 2
Length = 162
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 10/47 (21%)
Query: 2 LNCFVSFFLCRSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYL 48
L+C++ L RS D G E E+ +W F Y+ +L+KE CEYL
Sbjct: 40 LHCYI---LVRSLKDRGFLE---EIFNW---GFTYY-YLNKEGCEYL 76
>pdb|2GEE|A Chain A, Crystal Structure Of Human Type Iii Fibronectin
Extradomain B And Domain 8
Length = 203
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 108 GEGLQVLH--------YEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETV 159
GEG+ + Y EP DY + + KNGG+ T L + V +
Sbjct: 62 GEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTDLR 121
Query: 160 FPNAQGNISAVPW 172
F N + V W
Sbjct: 122 FTNIGPDTMRVTW 134
>pdb|2IXM|A Chain A, Structure Of Human Ptpa
Length = 303
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 99 DFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDE--FNTKNGGQRMATVLMYLSDVEEGG 156
DF F P G + H EP +F+DE N + ++++++++ G
Sbjct: 195 DFQFLPFIWGSSQLIDH----PYLEPR--HFVDEKAVNENHKDYMFLECILFITEMKTGP 248
Query: 157 ETVFPNAQGNISAVPWWNELSE 178
N NISAVP W+++++
Sbjct: 249 FAEHSNQLWNISAVPSWSKVNQ 270
>pdb|3DKQ|A Chain A, Crystal Structure Of Putative Oxygenase (Yp_001051978.1)
From Shewanella Baltica Os155 At 2.26 A Resolution
pdb|3DKQ|B Chain B, Crystal Structure Of Putative Oxygenase (Yp_001051978.1)
From Shewanella Baltica Os155 At 2.26 A Resolution
pdb|3DKQ|C Chain C, Crystal Structure Of Putative Oxygenase (Yp_001051978.1)
From Shewanella Baltica Os155 At 2.26 A Resolution
Length = 243
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 31/118 (26%)
Query: 115 HYEAGQKYEPHFDYFMDEFNTKNGGQRM-ATVLMYLSDVE--EGGETVFPNAQGNISAVP 171
Y+ G+ + H D + +T +G R + ++LS+ E +GGE V + G
Sbjct: 105 RYQGGETFGYHIDNAIR--STPDGXIRTDLSATLFLSEPENYQGGELVIQDTYGQ----- 157
Query: 172 WWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIR 229
SIK G +L+ S SSLH PV+ G + ++ W++
Sbjct: 158 ------------QSIKLSAGSLVLYPS---------SSLHQVTPVLSGERTAAFXWLQ 194
>pdb|2G62|A Chain A, Crystal Structure Of Human Ptpa
Length = 325
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 99 DFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDE--FNTKNGGQRMATVLMYLSDVEEGG 156
DF F P G + H EP +F+DE N + ++++++++ G
Sbjct: 216 DFQFLPFIWGSSQLIDH----PYLEPR--HFVDEKAVNENHKDYMFLECILFITEMKTGP 269
Query: 157 ETVFPNAQGNISAVPWWNELSE 178
N NISAVP W+++++
Sbjct: 270 FAEHSNQLWNISAVPSWSKVNQ 291
>pdb|1MPX|A Chain A, Alpha-Amino Acid Ester Hydrolase Labeled With
Selenomethionine
pdb|1MPX|B Chain B, Alpha-Amino Acid Ester Hydrolase Labeled With
Selenomethionine
pdb|1MPX|C Chain C, Alpha-Amino Acid Ester Hydrolase Labeled With
Selenomethionine
pdb|1MPX|D Chain D, Alpha-Amino Acid Ester Hydrolase Labeled With
Selenomethionine
Length = 615
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 125 HFDYFMDEFNTKNGGQRMATVLM--YLSDVEEGGETVFPNAQGNISAVPWWNELSE 178
+FDYF + + + G +A Y + ++ G F A G + +PWW++L+E
Sbjct: 197 NFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAG-LEQLPWWHKLTE 251
>pdb|2HV6|A Chain A, Crystal Structure Of The Phosphotyrosyl Phosphatase
Activator
pdb|2HV6|B Chain B, Crystal Structure Of The Phosphotyrosyl Phosphatase
Activator
pdb|2HV7|A Chain A, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|B Chain B, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|C Chain C, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|D Chain D, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|E Chain E, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|F Chain F, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|G Chain G, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|H Chain H, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
Length = 323
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 99 DFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDE--FNTKNGGQRMATVLMYLSDVEEGG 156
DF F P G + H EP +F+DE N + ++++++++ G
Sbjct: 214 DFQFLPFIWGSSQLIDH----PYLEPR--HFVDEKAVNENHKDYMFLECILFITEMKTGP 267
Query: 157 ETVFPNAQGNISAVPWWNELSE 178
N NISAVP W+++++
Sbjct: 268 FAEHSNQLWNISAVPSWSKVNQ 289
>pdb|2CXA|A Chain A, Crystal Structure Of LeucylPHENYLALANYL-Trna Protein
Transferase From Escherichia Coli
Length = 256
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 191 GDALLFWSMKPDASLDPSSLH 211
GD +L+WS P A L P SLH
Sbjct: 70 GDPILWWSPDPRAVLWPESLH 90
>pdb|2Z3L|A Chain A, Complex Structure Of Lf-Transferase And Peptide A
pdb|2Z3L|B Chain B, Complex Structure Of Lf-Transferase And Peptide A
pdb|2Z3N|A Chain A, Complex Structure Of Lf-Transferase And Peptide B
pdb|2Z3N|B Chain B, Complex Structure Of Lf-Transferase And Peptide B
pdb|2Z3K|A Chain A, Complex Structure Of Lf-Transferase And Raf
pdb|2Z3K|B Chain B, Complex Structure Of Lf-Transferase And Raf
pdb|2Z3M|A Chain A, Complex Structure Of Lf-Transferase And Daf
pdb|2Z3M|B Chain B, Complex Structure Of Lf-Transferase And Daf
pdb|2Z3O|A Chain A, Complex Structure Of Lf-Transferase And Phenylalanine
pdb|2Z3O|B Chain B, Complex Structure Of Lf-Transferase And Phenylalanine
pdb|2Z3P|A Chain A, Complex Structure Of Lf-Transferase And Leucine
pdb|2Z3P|B Chain B, Complex Structure Of Lf-Transferase And Leucine
Length = 233
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 191 GDALLFWSMKPDASLDPSSLH 211
GD +L+WS P A L P SLH
Sbjct: 52 GDPILWWSPDPRAVLWPESLH 72
>pdb|2DPS|A Chain A, Structure Of LeucylPHENYLALANYL-Trna-Protein Transferase
pdb|2DPS|B Chain B, Structure Of LeucylPHENYLALANYL-Trna-Protein Transferase
pdb|2DPT|A Chain A, LeucylPHENYLALANYL-Trna-Protein Transferase Complexed With
Puromycin
pdb|2DPT|B Chain B, LeucylPHENYLALANYL-Trna-Protein Transferase Complexed With
Puromycin
Length = 254
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 191 GDALLFWSMKPDASLDPSSLH 211
GD +L+WS P A L P SLH
Sbjct: 73 GDPILWWSPDPRAVLWPESLH 93
>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
pdb|1FON|B Chain B, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
Length = 240
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 148 YLSDVEEGGETVFPNAQGNISAVPWWNE-LSECGK----TGLSIKPKMGDALLFWSMKPD 202
Y V EG E V P G++ P WN CG LS ++GD + ++ P
Sbjct: 58 YDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPA 117
Query: 203 ASLDPS 208
+ P+
Sbjct: 118 GDILPN 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,661,503
Number of Sequences: 62578
Number of extensions: 308738
Number of successful extensions: 621
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 20
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)