RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 026698
(235 letters)
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 372 bits (959), Expect = e-133
Identities = 125/235 (53%), Positives = 167/235 (71%), Gaps = 1/235 (0%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
MR +GR+ A+VL+ +KPG+TT E+D+ H+ I ++GAYP+PLGY GFPKS+CTSVN
Sbjct: 4 MREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICTSVN 63
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
E +CHGIPD R L+DGD +NIDV V L+GYHGD++ TF G+V +EA+ LV+VT++ L+K
Sbjct: 64 EVVCHGIPDDRVLKDGDIVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEALYK 123
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG-RM 179
I PG IG I+ +A++ Y VVR+F GHGIGR FH +P + +Y G ++
Sbjct: 124 GIEAVKPGNRIGDIGHAIEKYAEKNGYSVVREFGGHGIGRKFHEEPQIPNYGRPGTGPKL 183
Query: 180 VLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 234
FTIEPM+ +G+ V D WT+VT+DGSLSAQFEHT+LIT DG EILT
Sbjct: 184 KPGMVFTIEPMINLGTYEVVTLPDGWTVVTKDGSLSAQFEHTVLITEDGPEILTL 238
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 359 bits (924), Expect = e-127
Identities = 120/235 (51%), Positives = 156/235 (66%), Gaps = 1/235 (0%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
MRV+GRLAA+VL+ VKPG+TT E+D+ + I D GA P+PLGY GFPKS+CTSVN
Sbjct: 14 MRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGYHGFPKSICTSVN 73
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
E +CHGIP + L++GD +NIDVTV +GYHGDTS TF G++ E + L +VTK+ L+
Sbjct: 74 EVVCHGIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLCEVTKEALYL 133
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG-RM 179
I+ PG IG IQ +A+ + VVR++ GHGIGR FH +P + HY G +
Sbjct: 134 GIAAVKPGARLGDIGHAIQKYAEAEGFSVVREYCGHGIGRKFHEEPQIPHYGAPGDGPVL 193
Query: 180 VLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 234
FTIEPM+ G D WT+VT+DGSLSAQ+EHT+ +T DG EILT
Sbjct: 194 KEGMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTEDGPEILTL 248
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 314 bits (808), Expect = e-109
Identities = 108/236 (45%), Positives = 144/236 (61%), Gaps = 2/236 (0%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
MR GR+ A L+ G V+PG+TT E+D+ + + ++GA PSP GY GFP S C SVN
Sbjct: 19 MRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEGYYGFPGSTCISVN 78
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
E + HGIP R ++DGD +NIDV+ YL+GYHGDT TF G V +EA L +V ++ L
Sbjct: 79 EEVAHGIPGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEKLCRVAEEALWA 138
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMV 180
I G IG+ I+D A + Y VVR GHG+GR H +P V+ + +
Sbjct: 139 GIKQVKAGRPLNDIGRAIEDFAKKNGYSVVRDLTGHGVGRSLHEEPSVILTYTDPLPNRL 198
Query: 181 LN--QTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 234
L T +EP L +G+ + DD WT+VT D SLSAQFEHT+++TRDG EILT
Sbjct: 199 LRPGMTLAVEPFLNLGAKDAETLDDGWTVVTPDKSLSAQFEHTVVVTRDGPEILTD 254
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 308 bits (792), Expect = e-107
Identities = 111/237 (46%), Positives = 154/237 (64%), Gaps = 4/237 (1%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
MR +G++AA+ L+ +LVKPG+TT E+D+ + I + GAYP+ LGY GFP C SVN
Sbjct: 14 MREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVN 73
Query: 61 ECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDE-ARNLVKVTKDCL 118
E + HGIP D + L++GD + IDV +++GY GDT+ TF G+V DE A+ L++ TK+ L
Sbjct: 74 EVVAHGIPGDKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLEATKEAL 133
Query: 119 HKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG- 177
+ I PG IG+ IQ++A+ + VVR GHGIGR H +P + +Y + G
Sbjct: 134 YAGIEAVKPGARLGDIGRAIQEYAESRGFSVVRNLTGHGIGRELHEEPSIPNYGKDGTGV 193
Query: 178 RMVLNQTFTIEPMLTIGSINPVMW-DDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
R+ F IEPM+ GS V D WT+VT+DGSLSAQFEHT+++T DG EILT
Sbjct: 194 RLKEGMVFAIEPMINTGSGEVVEGPSDRWTLVTKDGSLSAQFEHTVIVTEDGCEILT 250
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 313 bits (804), Expect = e-107
Identities = 128/234 (54%), Positives = 159/234 (67%), Gaps = 1/234 (0%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
MR + R+A +VL+ A +KPG+TTDEID+ VH+ I G YPSPL Y FPKS CTSVN
Sbjct: 146 MRETCRIAREVLDAAARAIKPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVN 205
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
E ICHGIPD+R LEDGD +N+DVTVY G HGD + TFF G+VD+ +R LVK T +CL K
Sbjct: 206 EVICHGIPDARKLEDGDIVNVDVTVYYKGCHGDLNETFFVGNVDEASRQLVKCTYECLEK 265
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRM 179
AI++ PG+ Y+++G+ I HA VV+ + GHGIG +FH P + HY RN G M
Sbjct: 266 AIAIVKPGVRYREVGEVINRHATMSGLSVVKSYCGHGIGELFHCAPNIPHYARNKAVGVM 325
Query: 180 VLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
Q FTIEPM+ G MW D WT VT DG SAQFEHT+L+T G E+LT
Sbjct: 326 KAGQVFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLT 379
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 293 bits (753), Expect = e-101
Identities = 115/234 (49%), Positives = 154/234 (65%), Gaps = 1/234 (0%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
+R +GRLAA+VLE VKPG++T E+D+ I +GA P+ LGY GFP SVC SVN
Sbjct: 12 IRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYYGFPGSVCISVN 71
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
E + HGIPD + L+DGD +NIDV V +GYHGDT+ TF G + EA L++ T++ L+K
Sbjct: 72 EVVIHGIPDKKVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLLECTEESLYK 131
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRM 179
AI PG +IG IQ +A+ + VVR++ GHGIGR FH +P + +Y + + R+
Sbjct: 132 AIEEAKPGNRIGEIGAAIQKYAEAKGFSVVREYCGHGIGRKFHEEPQIPNYGKKFTNVRL 191
Query: 180 VLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
FTIEPM+ G+ D WT+ T+DGSLSAQFEHTI+IT +G EILT
Sbjct: 192 KEGMVFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITDNGPEILT 245
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 233 bits (597), Expect = 4e-77
Identities = 98/239 (41%), Positives = 153/239 (64%), Gaps = 9/239 (3%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG--FPKSVCTS 58
+R + ++ A++L+ K G+TT+E+D+ ++ + A P+PL YG FPK++CTS
Sbjct: 52 IRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIPAPLNYGSPPFPKTICTS 111
Query: 59 VNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCL 118
+NE ICHGIP+ L++GD +NIDV+ ++GY+GD S G+V + + + + + +CL
Sbjct: 112 LNEVICHGIPNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKKVCQASLECL 171
Query: 119 HKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGR 178
+ AI++ PG+ +IG+ I++ AD+Y + VV QFVGHG+G FH +P V H+RN+
Sbjct: 172 NAAIAILKPGIPLYEIGEVIENCADKYGFSVVDQFVGHGVGIKFHENPYVPHHRNSSKIP 231
Query: 179 MVLNQTFTIEPMLTIGS----INPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
+ FTIEPM+ +G I+P+ ++W T D SAQ+EHTILIT G EILT
Sbjct: 232 LAPGMIFTIEPMINVGKKEGVIDPI---NHWEARTCDNQPSAQWEHTILITETGYEILT 287
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 177 bits (452), Expect = 3e-56
Identities = 64/227 (28%), Positives = 93/227 (40%), Gaps = 24/227 (10%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQ-MIIDNGAYPSPLGYGGFPKSVCTSV 59
MR + R+AA LE A ++PG+T E+ + + GA FP V +
Sbjct: 3 MRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGGA-----RGPAFPPIVASGP 57
Query: 60 NECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLH 119
N + H IP R L+DGD + IDV +GYH D + TF G E R L + +
Sbjct: 58 NAAVPHYIPSDRVLKDGDLVLIDVGAEYDGYHSDITRTFVVGKPTPEQRELYEAVLEAQE 117
Query: 120 KAISVCAPGMEYKKIGKTIQDHADRYNYG-VVRQFVGHGIGRVFHADPVVLHYRNNDHGR 178
AI+ PG+ + ++ + YG +GHGIG H + + ND
Sbjct: 118 AAIAAVKPGVTGGDVDAAAREVLEEGGYGEYFPHGLGHGIGLDVHDEGPYISRGGNDR-V 176
Query: 179 MVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILIT 225
+ FTIEP I G + E T+L+T
Sbjct: 177 LEPGMVFTIEPG----------------IYFIPGWGGVRIEDTVLVT 207
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed.
Length = 248
Score = 171 bits (434), Expect = 4e-53
Identities = 89/235 (37%), Positives = 126/235 (53%), Gaps = 1/235 (0%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
M SG+L A ++KPGITT EI+ V + +GA GY G+P ++C SVN
Sbjct: 13 MHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGYPYAICASVN 72
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
+ +CH P L +GD + ID+ V LNG D++ T+ G V DEA L+ V ++ L+K
Sbjct: 73 DEMCHAFPADVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLLLVAENALYK 132
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG-RM 179
I G IG I+ + + V R F GHGIG+ H +P + H+ G +
Sbjct: 133 GIDQAVIGNRVGDIGYAIESYVANEGFSVARDFTGHGIGKEIHEEPAIFHFGKQGQGPEL 192
Query: 180 VLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 234
TIEP++ +G + + WT T DG LSAQ+EHTI IT+DG ILT+
Sbjct: 193 QEGMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAITKDGPIILTK 247
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 134 bits (340), Expect = 2e-39
Identities = 55/232 (23%), Positives = 94/232 (40%), Gaps = 31/232 (13%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
+R + +A + A ++PG+T E+ A+ Q + G YP
Sbjct: 4 LRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYP--------AGPTIVGSG 55
Query: 61 E--CICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCL 118
+ H PD R L++GD + +D+ +GYH D + TF G+ DE R L + ++
Sbjct: 56 ARTALPHYRPDDRRLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREAQ 115
Query: 119 HKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQ-FVGHGIGRVFHADPVVLHYRNNDHG 177
A++ PG+ +++ ++ + + G GHGIG H PV + D
Sbjct: 116 EAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGHGIGLEIHEPPV---LKAGDDT 172
Query: 178 RMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGA 229
+ F +EP L + G + E T+L+T DG
Sbjct: 173 VLEPGMVFAVEPGLYL-----------------PGGGGVRIEDTVLVTEDGP 207
>gnl|CDD|180918 PRK07281, PRK07281, methionine aminopeptidase; Reviewed.
Length = 286
Score = 134 bits (340), Expect = 1e-38
Identities = 77/250 (30%), Positives = 118/250 (47%), Gaps = 35/250 (14%)
Query: 18 LVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG----FPKSVCTSVNECICHGIPDSRAL 73
L+KPG+ E+++ V + + P +G G +P + C +N+ + H P L
Sbjct: 30 LIKPGVDMWEVEEYVRRRCKEENVLPLQIGVDGAMMDYPYATCCGLNDEVAHAFPRHYIL 89
Query: 74 EDGDTINIDVTV------------------------YLNGYHG---DTSATFFCGDVDDE 106
++GD + +D+ + Y Y G D+ + G DE
Sbjct: 90 KEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTESYRGGLADSCWAYAVGTPSDE 149
Query: 107 ARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADP 166
+NL+ VTK+ +++ I G IG IQ++A+ YGVVR VGHG+G H +P
Sbjct: 150 VKNLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQEYAESRGYGVVRDLVGHGVGPTMHEEP 209
Query: 167 VVLHYRNNDHG-RMVLNQTFTIEPMLTIGS--INPVMWDDNWTIVTEDGSLSAQFEHTIL 223
+V +Y G R+ TIEPM+ G+ I+ M W T DG LS Q+EH +
Sbjct: 210 MVPNYGTAGRGLRLREGMVLTIEPMINTGTWEIDTDM-KTGWAHKTLDGGLSCQYEHQFV 268
Query: 224 ITRDGAEILT 233
IT+DG ILT
Sbjct: 269 ITKDGPVILT 278
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 121 bits (306), Expect = 2e-33
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 15/195 (7%)
Query: 5 GRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECIC 64
G++A++V E A L+KPG ++ + V I + GA P+ FP S+NE
Sbjct: 9 GKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAKPA------FP--CNISINEVAA 60
Query: 65 HGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKA 121
H P D R +GD + +D+ +++GY DT+ T D+ + +LV+ +++ L A
Sbjct: 61 HYTPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTV---DLGGKYEDLVEASEEALEAA 117
Query: 122 ISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGR-VFHADPVVLHYRNNDHGRMV 180
I V PG+ +IG+ I++ Y + +R GHG+ R HA P + +Y ++
Sbjct: 118 IEVVRPGVSVGEIGRVIEETIRSYGFKPIRNLTGHGLERYELHAGPSIPNYDEGGGVKLE 177
Query: 181 LNQTFTIEPMLTIGS 195
+ IEP T G
Sbjct: 178 EGDVYAIEPFATDGE 192
Score = 42.5 bits (101), Expect = 7e-05
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 210 EDGSLSAQFEHTILITRDGAEILT 233
G L +Q EHT+++T DG E+ T
Sbjct: 267 VKGGLVSQAEHTVIVTEDGCEVTT 290
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 118 bits (298), Expect = 2e-31
Identities = 62/236 (26%), Positives = 94/236 (39%), Gaps = 27/236 (11%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
+R + +A LE A ++PG+T EI + + GA F V + N
Sbjct: 163 IRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGA-----EGPSFDTIVASGEN 217
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
+ H P R L DGD + ID+ NGY D + TF G DE R + + +
Sbjct: 218 AALPHYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLEAQEA 277
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVR-QFVGHGIGRVF--HADPVVLHYRNNDHG 177
AI+ PG+ ++ + ++ YG+ GHG+G V H P L
Sbjct: 278 AIAAIRPGVTGGEVDAAARQVLEKAGYGLYFLHGTGHGVGFVLDVHEHPQYL--SPGSDT 335
Query: 178 RMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
+ F+IEP + + ED T+L+T DG E+LT
Sbjct: 336 TLEPGMVFSIEPGI--------YIPGGGGVRIED---------TVLVTEDGFEVLT 374
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 108 bits (272), Expect = 2e-28
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 15/198 (7%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
R +G + QV +YA +L+KPG+T EI + V I + GA P FP ++ S+N
Sbjct: 4 YREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGP------AFPVNL--SIN 55
Query: 61 ECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDC 117
EC H P D L++GD + +D +++GY D++ T D D + +L++ K+
Sbjct: 56 ECAAHYTPNAGDDTVLKEGDVVKLDFGAHVDGYIADSAFTV---DFDPKYDDLLEAAKEA 112
Query: 118 LHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGR-VFHADPVVLHYRNNDH 176
L+ AI P + +IG+ I++ + Y + +R GH I R HA + + + +
Sbjct: 113 LNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPIRNLTGHSIERYRLHAGKSIPNVKGGEG 172
Query: 177 GRMVLNQTFTIEPMLTIG 194
R+ + IEP T G
Sbjct: 173 TRLEEGDVYAIEPFATTG 190
Score = 37.6 bits (88), Expect = 0.003
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 211 DGSLSAQFEHTILITRDGAEILT 233
G AQFEHTI++ DG E+ T
Sbjct: 268 SGGYVAQFEHTIIVREDGKEVTT 290
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 103 bits (259), Expect = 1e-26
Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 15/195 (7%)
Query: 4 SGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECI 63
+G++ ++V A + PG+ E+ + V I + GA P FP ++ S+NEC
Sbjct: 11 AGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEP------AFPCNI--SINECA 62
Query: 64 CHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
H P D +DGD + +D+ +++GY DT+ T D+ D+ NLVK KD L+
Sbjct: 63 AHFTPKAGDKTVFKDGDVVKLDLGAHVDGYIADTAITV---DLGDQYDNLVKAAKDALYT 119
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGR-VFHADPVVLHYRNNDHGRM 179
AI G+ +IGK IQ+ + Y + GH + H + + + D ++
Sbjct: 120 AIKEIRAGVRVGEIGKAIQEVIESYGVKPISNLTGHSMAPYRLHGGKSIPNVKERDTTKL 179
Query: 180 VLNQTFTIEPMLTIG 194
IEP T G
Sbjct: 180 EEGDVVAIEPFATDG 194
Score = 36.3 bits (84), Expect = 0.009
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 212 GSLSAQFEHTILITRDGAEILTQ 234
G AQ+EHTIL+ G E+ T+
Sbjct: 273 GGYVAQWEHTILVEEHGKEVTTK 295
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 99.9 bits (250), Expect = 5e-26
Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 15/193 (7%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAY-PSPLGYGGFPKSVCTSV 59
+R + R+A + E +KPG+T E+ + + GA PS F V +
Sbjct: 4 LRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEGPS------FDTIVASGP 57
Query: 60 NECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLH 119
N + HG+P R +E+GD + ID +GY D + T G+ DE + + ++ +
Sbjct: 58 NSALPHGVPSDRKIEEGDLVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLEAQQ 117
Query: 120 KAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFV---GHGIGRVFHADPVVLHYRNNDH 176
AI PG+ K++ K +D + YG F+ GHG+G H P + +D
Sbjct: 118 AAIKAVKPGVTAKEVDKAARDVIEEAGYG--EYFIHRTGHGVGLEVHEAPYISP--GSD- 172
Query: 177 GRMVLNQTFTIEP 189
+ FTIEP
Sbjct: 173 DVLEEGMVFTIEP 185
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 60.9 bits (148), Expect = 8e-11
Identities = 56/213 (26%), Positives = 85/213 (39%), Gaps = 37/213 (17%)
Query: 6 RLAA----QVLEYAGTLVKPGIT----TDEIDKAVHQMIIDNGAYPSPLGYG-GFPKSVC 56
R AA QV YA +++KPG+ + I+ ++I +G L G FP
Sbjct: 162 RRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRELIEADG-----LKCGWAFPTGC- 215
Query: 57 TSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVK 112
S+N C H P D L D +D ++NG D + T F + + L++
Sbjct: 216 -SLNHCAAHYTPNTGDKTVLTYDDVCKLDFGTHVNGRIIDCAFTVAF----NPKYDPLLQ 270
Query: 113 VTKDCLHKAISVCAPGMEYKKIGKTIQDHADRY-------NYGV--VRQFVGHGIGR-VF 162
TKD + I + IG IQ+ + Y Y + +R GH IG +
Sbjct: 271 ATKDATNTGIKEAGIDVRLSDIGAAIQEVIESYEVEIKGKTYPIKSIRNLNGHSIGPYII 330
Query: 163 HADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGS 195
H V + ++ RM + F IE T S
Sbjct: 331 HGGKSVPIVKGGENTRMEEGELFAIE---TFAS 360
Score = 30.1 bits (68), Expect = 1.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 212 GSLSAQFEHTILITRDGAEIL 232
GS ++Q EHTIL+ E+L
Sbjct: 444 GSYTSQMEHTILLRPTCKEVL 464
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 58.5 bits (142), Expect = 2e-10
Identities = 58/251 (23%), Positives = 101/251 (40%), Gaps = 47/251 (18%)
Query: 2 RVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLG-YGGFPKSVC 56
+ +G++A +VL+ +L PG ++ DK + + + Y G C
Sbjct: 5 KTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEEL--GKVYKKEKKLEKGIAFPTC 62
Query: 57 TSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDE-----A 107
SVN C+CH P + L+DGD + ID+ +++GY + T G +
Sbjct: 63 ISVNNCVCHFSPLKSDATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVTGKK 122
Query: 108 RNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVF----- 162
+++ L A+ + PG + I + IQ Y V + H + RV
Sbjct: 123 ADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVEGVLSHQLKRVVSSGEG 182
Query: 163 HADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTI 222
A V HG + P PV+++ ++G + AQF+ T+
Sbjct: 183 KAKLVEC----VKHG--------LLFPY-------PVLYE-------KEGEVVAQFKLTV 216
Query: 223 LITRDGAEILT 233
L+T +G +LT
Sbjct: 217 LLTPNGVTVLT 227
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 48.3 bits (116), Expect = 7e-07
Identities = 59/257 (22%), Positives = 92/257 (35%), Gaps = 42/257 (16%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
MR + ++A+ A +PG++ E++ GA Y V N
Sbjct: 4 MRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARL-AYSYI-----VAAGSN 57
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTKDCLH 119
I H + + + L+DGD + ID GY D + TF G DE R L +
Sbjct: 58 AAILHYVHNDQPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLAAQK 117
Query: 120 KAISVCAPGMEYKKI----GKTIQDH-----------ADRYNYGVVRQF----VGHGIGR 160
AI+ C PG+ Y+ I + + + + G +F +GH +G
Sbjct: 118 AAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHYLGL 177
Query: 161 VFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWT----IVTEDGSLSA 216
H D + TIEP + I ++ + I ED
Sbjct: 178 DVH-DVGGYLRYLRRARPLEPGMVITIEPGIYF--IPDLLDVPEYFRGGGIRIED----- 229
Query: 217 QFEHTILITRDGAEILT 233
+L+T DG E LT
Sbjct: 230 ----DVLVTEDGPENLT 242
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 48.6 bits (116), Expect = 9e-07
Identities = 63/268 (23%), Positives = 96/268 (35%), Gaps = 66/268 (24%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVCTSV 59
+R +G ++A A +PG+ +++ +H +GA YPS + V +
Sbjct: 182 LRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARYPS------YNTIVGSGE 235
Query: 60 NECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTKDCL 118
N CI H + + DGD + ID GY GD + TF G R + + + L
Sbjct: 236 NGCILHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLESL 295
Query: 119 HKAISVCAPGMEYKKIGKTIQDHADR------YNYGVV-------------RQFVGHGIG 159
++ + PG ++ + R G++ R F HG+
Sbjct: 296 ETSLRLYRPGTSIRE----VTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFMHGLS 351
Query: 160 RVFHADPV--VLHYRNNDHGR-----MVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDG 212
D V V Y D R MVL T+EP L I D
Sbjct: 352 HWLGLD-VHDVGVY-GQDRSRILEPGMVL----TVEPGLYIAP---------------DA 390
Query: 213 SLSAQF-------EHTILITRDGAEILT 233
+ Q+ E I+IT G E LT
Sbjct: 391 DVPEQYRGIGIRIEDDIVITETGNENLT 418
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 48.3 bits (115), Expect = 9e-07
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 51 FPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDE 106
FP C SVN C+ H P L++GD + ID+ +++G+ + TF G +E
Sbjct: 77 FP--TCISVNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEE 134
Query: 107 -----ARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGR 160
+++ A+ + PG ++ + I A Y V + H + +
Sbjct: 135 PVTGRKADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKVAHSYGCTPVEGMLSHQLKQ 193
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 44.2 bits (104), Expect = 3e-05
Identities = 49/238 (20%), Positives = 86/238 (36%), Gaps = 31/238 (13%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
+R++ +A + E+ ++ G++ EI + + GA + F V +
Sbjct: 136 IRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKA-----SFDTIVASGWR 190
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCG--DVDDEARNLVKVTKDCL 118
+ HG + + G+ + +D GY D + T V E+ L V + L
Sbjct: 191 GALPHGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVL 250
Query: 119 H---KAISVCAPGMEYKKIGKTIQDHADRYNYG-VVRQFVGHGIGRVFHADPVVLHYRNN 174
AIS PG+ +++ + YG GH IG H DP +
Sbjct: 251 QAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFGHNTGHAIGIEVHEDP---RFSPR 307
Query: 175 DHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEIL 232
D + T+EP + + G + E +L+T GAE+L
Sbjct: 308 DTTTLQPGMLLTVEPGIYL-----------------PGQGGVRIEDVVLVTPQGAEVL 348
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 40.5 bits (94), Expect = 4e-04
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 27/167 (16%)
Query: 6 RLAAQVLEY----AGTLVKPGITTDEIDKAVHQMIIDNGA------YPSPLGYGGFPKSV 55
R +A++ EY A L++ G T+ E+ A ++ + +G PK +
Sbjct: 105 RKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHFSRFHLISVGADFSPKLI 164
Query: 56 CTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 115
++ C GD I D V ++GY D + TF G+ + R + + +
Sbjct: 165 PSNTKAC------------SGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIR 212
Query: 116 DCLHKAISVCAPGMEYKKIGKTIQDHADRY---NYGVVRQFVGHGIG 159
+S+ APG++ K + + + + NY R +GHG G
Sbjct: 213 TGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYN--RGHLGHGNG 257
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 40.5 bits (94), Expect = 4e-04
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 27/167 (16%)
Query: 6 RLAAQVLEY----AGTLVKPGITTDEIDKAVHQMIIDNGA------YPSPLGYGGFPKSV 55
R +A++ EY A L++ G T+ E+ A ++ + +G PK +
Sbjct: 188 RKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHFSRFHLISVGADFSPKLI 247
Query: 56 CTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 115
++ C GD I D V ++GY D + TF G+ + R + + +
Sbjct: 248 PSNTKAC------------SGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIR 295
Query: 116 DCLHKAISVCAPGMEYKKIGKTIQDHADRY---NYGVVRQFVGHGIG 159
+S+ APG++ K + + + + NY R +GHG G
Sbjct: 296 TGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYN--RGHLGHGNG 340
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 39.2 bits (91), Expect = 0.001
Identities = 39/168 (23%), Positives = 63/168 (37%), Gaps = 17/168 (10%)
Query: 67 IPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCA 126
I D+ + GD I D + + GY D + TF G+ D + + + +S+ A
Sbjct: 246 IADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVA 305
Query: 127 PGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQTFT 186
PG++ K + + G+ GH + H D V L +TF
Sbjct: 306 PGVKLKAVFDSTMAVIKT--SGLPHYNRGH----LGHGDGVFLGLEEVPFVSTQATETFC 359
Query: 187 IEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 234
P + + P +I+ ED ILIT G E L++
Sbjct: 360 --PGMVLSLETPYYGIGVGSIMLED---------MILITDSGFEFLSK 396
>gnl|CDD|238523 cd01090, Creatinase, Creatine amidinohydrolase. E.C.3.5.3.3.
Hydrolyzes creatine to sarcosine and urea.
Length = 228
Score = 36.0 bits (83), Expect = 0.010
Identities = 37/179 (20%), Positives = 66/179 (36%), Gaps = 30/179 (16%)
Query: 65 HGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISV 124
H +R ++ GD ++++ + GY+ T F +V D + + + + +
Sbjct: 69 HNPVTNRKVQRGDILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLEL 128
Query: 125 CAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQT 184
PG K I + + ++ R F G+G H+ V+ HY + G +
Sbjct: 129 IKPGARCKDIAAELNEMYREHDLLRYRTF-GYG-----HSFGVLSHYYGREAGLELREDI 182
Query: 185 FTI---------EPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTIL-ITRDGAEILT 233
T+ EPM+ + P EH IL I +GAE +T
Sbjct: 183 DTVLEPGMVVSMEPMIMLPEGQP--------------GAGGYREHDILVINENGAENIT 227
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 30.1 bits (68), Expect = 1.1
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 32 VHQMIIDNGAYPSPLGYGG--FPKSVCTSV 59
V ++IDNG+ + G+ G P +V S+
Sbjct: 6 VPTIVIDNGSGTTKAGFAGNDTPTTVFPSI 35
>gnl|CDD|163618 cd00842, MPP_ASMase, acid sphingomyelinase and related proteins,
metallophosphatase domain. Acid sphingomyelinase
(ASMase) is a ubiquitously expressed phosphodiesterase
which hydrolyzes sphingomyelin in acid pH conditions to
form ceramide, a bioactive second messenger, as part of
the sphingomyelin signaling pathway. ASMase is
localized at the noncytosolic leaflet of biomembranes
(for example the luminal leaflet of endosomes, lysosomes
and phagosomes, and the extracellular leaflet of plasma
membranes). ASMase-deficient humans develop
Niemann-Pick disease. This disease is characterized by
lysosomal storage of sphingomyelin in all tissues.
Although ASMase-deficient mice are resistant to
stress-induced apoptosis, they have greater
susceptibility to bacterial infection. The latter
correlates with defective phagolysosomal fusion and
antibacterial killing activity in ASMase-deficient
macrophages. ASMase belongs to the metallophosphatase
(MPP) superfamily. MPPs are functionally diverse, but
all share a conserved domain with an active site
consisting of two metal ions (usually manganese, iron,
or zinc) coordinated with octahedral geometry by a cage
of histidine, aspartate, and asparagine residues. The
MPP superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 296
Score = 29.6 bits (67), Expect = 1.2
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 12/61 (19%)
Query: 140 DHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPV 199
+RY+ + QF GH H D + Y +ND G I L S+ P
Sbjct: 241 QIINRYSDTIAGQFFGHT-----HRDEFRVFYDDNDTGEP-------INVALIAPSVTPY 288
Query: 200 M 200
Sbjct: 289 S 289
>gnl|CDD|222859 PHA02535, P, terminase ATPase subunit; Provisional.
Length = 581
Score = 29.7 bits (67), Expect = 1.5
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 13/85 (15%)
Query: 128 GMEYKKIGKTIQDHADRYN--Y-GVVRQFVGHGIG---RVFHADPVVLHYRNNDHGRMVL 181
G+++ + I+ ++YN Y G+ +G G+ + F V ++Y R+VL
Sbjct: 442 GLDFAEQAAEIRKLTEKYNVTYIGIDATGIGAGVYQLVKKFFPAAVAINYSPEVKTRLVL 501
Query: 182 NQTFTIEPMLTIGSINPVMWDDNWT 206
+ + +D WT
Sbjct: 502 K-------AHDVIEHGRLEFDAGWT 519
>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 466
Score = 29.3 bits (66), Expect = 1.9
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 88 NGYHGDTSATFFCGDVDDEARNLVKVT-KDCLHKAISVCAPGMEYKKIGKTIQDHADR 144
N YHG+T A GDV L T K L I V +P + G + ++H+ R
Sbjct: 147 NSYHGETLAAMSVGDV-----ALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRR 199
>gnl|CDD|176473 cd06444, DNA_pol_A, Family A polymerase primarily fills DNA gaps
that arise during DNA repair, recombination and
replication. DNA polymerase family A, 5'-3' polymerase
domain. Family A polymerase functions primarily to fill
DNA gaps that arise during DNA repair, recombination and
replication. DNA-dependent DNA polymerases can be
classified into six main groups based upon phylogenetic
relationships with E. coli polymerase I (classA), E.
coli polymerase II (class B), E.coli polymerase III
(class C), euryarchaeota polymerase II (class D), human
polymerase beta (class X), E. coli UmuC/DinB and
eukaryotic RAP 30/Xeroderma pigmentosum variant (class
Y). Family A polymerases are found primarily in
organisms related to prokaryotes and include prokaryotic
DNA polymerase I, mitochondrial polymerase gamma, and
several bacteriophage polymerases including those from
odd-numbered phage (T3, T5, and T7). Prokaryotic
polymerase I (pol I) has two functional domains located
on the same polypeptide; a 5'-3' polymerase and a 5'-3'
exonuclease. Pol I uses its 5' nuclease activity to
remove the ribonucleotide portion of newly synthesized
Okazaki fragments and the DNA polymerase activity to
fill in the resulting gap. The structure of these
polymerases resembles in overall morphology a cupped
human right hand, with fingers (which bind an incoming
nucleotide and interact with the single-stranded
template), palm (which harbors the catalytic amino acid
residues and also binds an incoming dNTP) and thumb
(which binds double-stranded DNA) subdomains.
Length = 347
Score = 28.9 bits (65), Expect = 2.3
Identities = 24/114 (21%), Positives = 36/114 (31%), Gaps = 27/114 (23%)
Query: 124 VCAPGMEYKKIGKTIQDHADRYNYGVVR------QFVGHGI--GRVFHADPVVLHYRNND 175
+EYKK+ K + + VR ++V G GR D
Sbjct: 28 AVPLLLEYKKLAKLWSANGWPWLDQWVRDGRFHPEYVPGGTVTGRWASRGGNAQQIPRRD 87
Query: 176 HGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTIL--ITRD 227
+ Q F +P WT+V D S Q E +L ++ D
Sbjct: 88 PLGRDIRQAFVADP--------------GWTLVVADAS---QLELRVLAALSGD 124
>gnl|CDD|218956 pfam06248, Zw10, Centromere/kinetochore Zw10. Zw10 and rough deal
proteins are both required for correct metaphase
check-pointing during mitosis. These proteins bind to
the centromere/kinetochore.
Length = 593
Score = 28.9 bits (65), Expect = 2.7
Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 30/117 (25%)
Query: 59 VNECICHGIPDS------------------RALEDGDTINIDVTVYLNGYHGDTSATF-- 98
+ +C+ IP++ AL++ + ++ D T L Y D + F
Sbjct: 323 IKDCLVKSIPETSSELQEYSEVIEDTEEFEAALKEMNFLDGDATD-LLKYARDVNTHFAN 381
Query: 99 -FCGDVDDEARNL--------VKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYN 146
C DV ARNL V VT D + + E K K+ + +
Sbjct: 382 KKCQDVLVTARNLMTSDLHNTVLVTPDSKVVKPKLPSSKAETKAQAKSERLWLENEK 438
>gnl|CDD|232831 TIGR00115, tig, trigger factor. Trigger factor is a
ribosome-associated molecular chaperone and is the first
chaperone to interact with nascent polypeptide. Trigger
factor can bind at the same time as the signal
recognition particle (SRP), but is excluded by the SRP
receptor (FtsY). The central domain of trigger factor
has peptidyl-prolyl cis/trans isomerase activity. This
protein is found in a single copy in virtually every
bacterial genome [Protein fate, Protein folding and
stabilization].
Length = 408
Score = 28.7 bits (65), Expect = 2.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 69 DSRALEDGDTINIDVTVYLNG 89
+ RA E GD + ID +++G
Sbjct: 143 ERRAAEKGDRVTIDFEGFIDG 163
>gnl|CDD|234956 PRK01490, tig, trigger factor; Provisional.
Length = 435
Score = 28.6 bits (65), Expect = 3.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 67 IPDSRALEDGDTINIDVTVYLNG 89
+P R E+GD + ID ++G
Sbjct: 152 VPVERPAENGDRVTIDFVGSIDG 174
>gnl|CDD|147854 pfam05927, Penaeidin, Penaeidin. This family consists of several
isoforms of the penaeidin protein which is specific to
shrimps. Penaeidins, a unique family of antimicrobial
peptides (AMPs) with both proline and cysteine-rich
domains, were initially identified in the hemolymph of
the Pacific white shrimp, Litopenaeus vannamei.
Length = 73
Score = 26.3 bits (58), Expect = 4.5
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 43 PSPLGYGGFPKSVCTSVNECICHGIPDSRAL 73
P P G P VC S C+ + S+A
Sbjct: 33 PRPFGGPYGPVPVCNS-----CYRLSFSQAR 58
>gnl|CDD|216139 pfam00825, Ribonuclease_P, Ribonuclease P.
Length = 107
Score = 26.8 bits (60), Expect = 5.2
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 159 GRVFHADPVVLHYRNNDHGR 178
GR + VL+Y N G
Sbjct: 18 GRRVASRHFVLYYLPNSLGY 37
>gnl|CDD|188463 TIGR03948, butyr_acet_CoA, butyryl-CoA:acetate CoA-transferase.
This enzyme represents one of at least two mechanisms
for reclaiming CoA from butyryl-CoA at the end of
butyrate biosynthesis (an important process performed by
some colonic bacteria), namely transfer of CoA to
acetate. An alternate mechanism transfers the butyrate
onto inorganic phosphate, after which butyrate kinase
transfers the phosphate onto ADP, creating ATP [Energy
metabolism, Fermentation].
Length = 445
Score = 27.5 bits (61), Expect = 6.7
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 27 EIDKAVHQMIID---NGAYPSPLGYGGFPKSVCTSVNE 61
E+DKAV ++I++ NGA LG GG P +V + + E
Sbjct: 197 EVDKAVAKLIVEEIPNGACLQ-LGIGGMPNAVGSLIAE 233
>gnl|CDD|237726 PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I;
Provisional.
Length = 473
Score = 27.6 bits (62), Expect = 7.1
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 139 QDHADRYNYGVVRQFV 154
+ YNY VVRQF
Sbjct: 2 ANSPTEYNYKVVRQFA 17
>gnl|CDD|131035 TIGR01980, sufB, FeS assembly protein SufB. This protein, SufB,
forms a cytosolic complex SufBCD. This complex enhances
the cysteine desulfurase of SufSE. The system, together
with SufA, is believed to act in iron-sulfur cluster
formation during oxidative stress. Note that SufC
belongs to the family of ABC transporter ATP binding
proteins, so this protein, encoded by an adjacent gene,
has often been annotated as a transporter component
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 448
Score = 27.3 bits (61), Expect = 7.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 212 GSLSAQFEHTILITRDGAEI 231
+ QFEHT++I +GA +
Sbjct: 198 SENTGQFEHTLIIADEGASV 217
>gnl|CDD|202568 pfam03181, BURP, BURP domain. The BURP domain is found at the
C-terminus of several different plant proteins. It was
named after the proteins in which it was first
identified: the BNM2 clone-derived protein from Brassica
napus; USPs and USP-like proteins; RD22 from Arabidopsis
thaliana; and PG1beta from Lycopersicon esculentum. This
domain is around 230 amino acid residues long. It
possesses the following conserved features: two
phenylalanine residues at its N-terminus; two cysteine
residues; and four repeated cysteine-histidine motifs,
arranged as: CH-X(10)-CH-X(25-27)-CH-X(25-26)-CH, where
X can be any amino acid. The function of this domain is
unknown.
Length = 216
Score = 26.9 bits (60), Expect = 9.2
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 9/38 (23%)
Query: 64 CHGIPDSRA----LEDGD-TINIDVTVYLNGYHGDTSA 96
CH +P +RA L D T V V H DTSA
Sbjct: 149 CHTVPKTRAYEVDLVGADGTKVKAVAV----CHTDTSA 182
>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed.
Length = 404
Score = 27.0 bits (61), Expect = 9.2
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 66 GIPD--------SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVD-DEARNLVK 112
G+PD AL + + IN+D+ V G T TF D ++A L++
Sbjct: 269 GVPDKPGIAAQIFGALAEAN-INVDMIVQNVSEDGKTDITFTVPRDDLEKALELLE 323
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.430
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,095,342
Number of extensions: 1141992
Number of successful extensions: 1078
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1025
Number of HSP's successfully gapped: 52
Length of query: 235
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 141
Effective length of database: 6,768,326
Effective search space: 954333966
Effective search space used: 954333966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)