Your job contains 1 sequence.
>026701
MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLL
MGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYL
QLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTF
EYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026701
(235 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2039727 - symbol:PnsL1 "Photosynthetic NDH su... 656 2.3e-64 1
TAIR|locus:2100681 - symbol:PPL1 "PsbP-like protein 1" sp... 344 2.6e-31 1
TAIR|locus:2033087 - symbol:PSBP-1 "photosystem II subuni... 135 3.6e-07 1
TAIR|locus:2130295 - symbol:PPD1 "PsbP-Domain Protein1" s... 122 1.6e-06 2
TAIR|locus:2079792 - symbol:AT3G05410 species:3702 "Arabi... 91 0.00041 2
>TAIR|locus:2039727 [details] [associations]
symbol:PnsL1 "Photosynthetic NDH subcomplex L 1"
species:3702 "Arabidopsis thaliana" [GO:0005509 "calcium ion
binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009523 "photosystem II" evidence=IEA] [GO:0009654 "oxygen
evolving complex" evidence=IEA;ISS] [GO:0015979 "photosynthesis"
evidence=IEA] [GO:0019898 "extrinsic to membrane" evidence=IEA]
[GO:0030095 "chloroplast photosystem II" evidence=ISS] [GO:0009543
"chloroplast thylakoid lumen" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0016556 "mRNA modification" evidence=RCA] [GO:0019344 "cysteine
biosynthetic process" evidence=RCA] InterPro:IPR002683 Pfam:PF01789
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0019898 GO:GO:0005509
EMBL:AC004218 UniGene:At.37167 UniGene:At.63501 GO:GO:0009535
GO:GO:0015979 GO:GO:0009543 Gene3D:3.40.1000.10 InterPro:IPR016123
SUPFAM:SSF55724 GO:GO:0009654 HOGENOM:HOG000232965 EMBL:AY039968
EMBL:AY133798 EMBL:AY085632 IPI:IPI00518089 IPI:IPI00656679
IPI:IPI00846788 PIR:T00557 RefSeq:NP_001031514.2
RefSeq:NP_001078022.1 RefSeq:NP_565906.1 ProteinModelPortal:O80634
SMR:O80634 STRING:O80634 PaxDb:O80634 PRIDE:O80634
EnsemblPlants:AT2G39470.1 GeneID:818532 KEGG:ath:AT2G39470
TAIR:At2g39470 eggNOG:NOG283132 InParanoid:Q94BP9 OMA:YAAPNQI
PhylomeDB:O80634 ProtClustDB:CLSN2688805 Genevestigator:O80634
Uniprot:O80634
Length = 238
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 132/238 (55%), Positives = 158/238 (66%)
Query: 1 MAVSSLSLNW--VSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDI-SSDEENKSKRR 57
MAVSSLS+ S T+S K + PN ++ S E N KRR
Sbjct: 1 MAVSSLSIRCGGFSPTISHKTEILCPNPSLKACCLLSSGGKADSSESTYQKGSGNNWKRR 60
Query: 58 LLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKD 117
L+G G L A +PA L A+EIPK+Y FVDR DGYSY YPSDW EF+F HDS FKD
Sbjct: 61 QALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKD 120
Query: 118 RYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNY 177
RYLQLQNVRVRFIPT+K D+H++GPMEEVV +L +H +AAPNQVA I DM+E+ DGKNY
Sbjct: 121 RYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNY 180
Query: 178 YTFEYILTSPNYXXXXXXXXXXXNGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI 235
YTFEY L +P Y N RYYTLIVGANERRW++V+ +L+VVADS +IL I
Sbjct: 181 YTFEYGLRTPIYATTSFATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238
>TAIR|locus:2100681 [details] [associations]
symbol:PPL1 "PsbP-like protein 1" species:3702
"Arabidopsis thaliana" [GO:0005509 "calcium ion binding"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009523 "photosystem II" evidence=IEA] [GO:0009654 "oxygen
evolving complex" evidence=IEA;ISS] [GO:0015979 "photosynthesis"
evidence=IEA] [GO:0019898 "extrinsic to membrane" evidence=IEA]
[GO:0030095 "chloroplast photosystem II" evidence=ISS] [GO:0009543
"chloroplast thylakoid lumen" evidence=IDA] [GO:0031977 "thylakoid
lumen" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0006364
"rRNA processing" evidence=RCA] [GO:0009657 "plastid organization"
evidence=RCA] [GO:0010103 "stomatal complex morphogenesis"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0043085 "positive regulation of catalytic activity"
evidence=RCA] InterPro:IPR002683 Pfam:PF01789 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0019898 GO:GO:0005509
EMBL:AL132954 GO:GO:0031977 GO:GO:0015979 GO:GO:0009543
Gene3D:3.40.1000.10 InterPro:IPR016123 SUPFAM:SSF55724
GO:GO:0009654 EMBL:AF419553 EMBL:AY097338 EMBL:AY087663
IPI:IPI00528004 PIR:PA0046 PIR:T47672 RefSeq:NP_191093.1
UniGene:At.27396 ProteinModelPortal:P82538 SMR:P82538 STRING:P82538
PaxDb:P82538 PRIDE:P82538 EnsemblPlants:AT3G55330.1 GeneID:824699
KEGG:ath:AT3G55330 TAIR:At3g55330 eggNOG:NOG08775
HOGENOM:HOG000232965 InParanoid:P82538 KO:K02717 OMA:GYEFLYP
PhylomeDB:P82538 ProtClustDB:CLSN2685283 Genevestigator:P82538
GermOnline:AT3G55330 Uniprot:P82538
Length = 230
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/188 (37%), Positives = 104/188 (55%)
Query: 47 SSDEENKSKRRLLL-MGAGLLTANLLPANSL-FAQEIPKNYDAFVDRIDGYSYVYPSDWT 104
SS ++K +RRL++ G +LL L FA E K + A D D Y+++YP W
Sbjct: 41 SSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYPFGWQ 100
Query: 105 EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADI 164
E G D +KD L++V V +PT K+ + + GP +++ L + V A PNQ +
Sbjct: 101 EVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQKTTL 160
Query: 165 LDMQEKSVDGKNYYTFEYILTSPNYXXXXXXXXXXXNGRYYTLIVGANERRWKRVRNKLK 224
+D E VDGK YY FE+ + + NY NG +YTL GANERRW++++++L
Sbjct: 161 IDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLH 220
Query: 225 VVADSFRI 232
V DSF+I
Sbjct: 221 TVVDSFKI 228
>TAIR|locus:2033087 [details] [associations]
symbol:PSBP-1 "photosystem II subunit P-1" species:3702
"Arabidopsis thaliana" [GO:0005509 "calcium ion binding"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009543 "chloroplast thylakoid lumen" evidence=ISS;IDA]
[GO:0009654 "oxygen evolving complex" evidence=ISS] [GO:0015979
"photosynthesis" evidence=IEA] [GO:0030095 "chloroplast photosystem
II" evidence=ISS] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0019898 "extrinsic to membrane" evidence=TAS] [GO:0031977
"thylakoid lumen" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0042742 "defense
response to bacterium" evidence=IEP;RCA] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006364 "rRNA
processing" evidence=RCA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0009409 "response to cold"
evidence=RCA] [GO:0009595 "detection of biotic stimulus"
evidence=RCA] [GO:0009637 "response to blue light" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0009657 "plastid organization" evidence=RCA] [GO:0009697
"salicylic acid biosynthetic process" evidence=RCA] [GO:0009744
"response to sucrose stimulus" evidence=RCA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0009814 "defense response, incompatible interaction"
evidence=RCA] [GO:0009862 "systemic acquired resistance, salicylic
acid mediated signaling pathway" evidence=RCA] [GO:0009867
"jasmonic acid mediated signaling pathway" evidence=RCA]
[GO:0010114 "response to red light" evidence=RCA] [GO:0010155
"regulation of proton transport" evidence=RCA] [GO:0010200
"response to chitin" evidence=RCA] [GO:0010207 "photosystem II
assembly" evidence=RCA] [GO:0010218 "response to far red light"
evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0019344
"cysteine biosynthetic process" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA;TAS] [GO:0031348
"negative regulation of defense response" evidence=RCA] [GO:0043900
"regulation of multi-organism process" evidence=RCA] [GO:0050832
"defense response to fungus" evidence=RCA] InterPro:IPR002683
Pfam:PF01789 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570
GO:GO:0008266 GO:GO:0019898 GO:GO:0048046 GO:GO:0042742
GO:GO:0005509 GO:GO:0009941 EMBL:AC007592 GO:GO:0009535
GO:GO:0031977 UniGene:At.23738 GO:GO:0009543 GO:GO:0019684
Gene3D:3.40.1000.10 InterPro:IPR016123 SUPFAM:SSF55724
GO:GO:0009654 KO:K02717 UniGene:At.3352 EMBL:X98108 EMBL:AY056416
EMBL:AY070469 EMBL:AY074308 EMBL:AY096487 EMBL:AY087305 EMBL:Z25620
IPI:IPI00540742 IPI:IPI00891781 PIR:JC5271 RefSeq:NP_001117239.1
RefSeq:NP_172153.1 UniGene:At.42209 UniGene:At.47605
ProteinModelPortal:Q42029 SMR:Q42029 IntAct:Q42029 STRING:Q42029
SWISS-2DPAGE:Q42029 PaxDb:Q42029 PRIDE:Q42029 ProMEX:Q42029
DNASU:837178 EnsemblPlants:AT1G06680.1 GeneID:837178
KEGG:ath:AT1G06680 TAIR:At1g06680 eggNOG:NOG318473
HOGENOM:HOG000242124 InParanoid:Q42029 OMA:MASTSCF PhylomeDB:Q42029
ProtClustDB:PLN00042 Genevestigator:Q42029 GermOnline:AT1G06680
Uniprot:Q42029
Length = 263
Score = 135 (52.6 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 51/172 (29%), Positives = 76/172 (44%)
Query: 42 CPEDISSDEENKS-KRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDR 91
C S +++N + RRL LL+GA + + + PA++ + + PK N D
Sbjct: 40 CKAQQSHEDDNSAVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYN 99
Query: 92 IDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVS 148
DG+ P+ W E E+ G F+D + N+ V PTDKK + D G EE +S
Sbjct: 100 GDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLS 159
Query: 149 N----LARHVYAAP---------NQVA--DILDMQEKSVDGKNYYTFEYILT 185
L + Y N VA +IL+ + V GK YY +LT
Sbjct: 160 QVNYLLGKQAYFGETASEGGFDNNAVATANILESSSQEVGGKPYYYLS-VLT 210
>TAIR|locus:2130295 [details] [associations]
symbol:PPD1 "PsbP-Domain Protein1" species:3702
"Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009654 "oxygen evolving complex" evidence=ISS] [GO:0030095
"chloroplast photosystem II" evidence=ISS] [GO:0009543 "chloroplast
thylakoid lumen" evidence=IDA] [GO:0031977 "thylakoid lumen"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048564 "photosystem I assembly" evidence=IMP]
InterPro:IPR002683 Pfam:PF01789 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR EMBL:AL161541 GO:GO:0019898 GO:GO:0005509
GO:GO:0009535 GO:GO:0031977 GO:GO:0015979 EMBL:Z97339 GO:GO:0009543
Gene3D:3.40.1000.10 InterPro:IPR016123 SUPFAM:SSF55724
EMBL:AY085014 EMBL:AK175561 IPI:IPI00526562 IPI:IPI00547165
IPI:IPI00657053 PIR:G71419 RefSeq:NP_001031646.1 RefSeq:NP_567468.1
RefSeq:NP_974555.1 UniGene:At.33171 ProteinModelPortal:O23403
SMR:O23403 DIP:DIP-58590N STRING:O23403 PaxDb:O23403 PRIDE:O23403
EnsemblPlants:AT4G15510.1 GeneID:827223 KEGG:ath:AT4G15510
TAIR:At4g15510 eggNOG:NOG329161 HOGENOM:HOG000242253
InParanoid:O23403 OMA:YPQNWIQ PhylomeDB:O23403 ProtClustDB:PLN00059
BioCyc:MetaCyc:AT4G15510-MONOMER Genevestigator:O23403
GO:GO:0009654 Uniprot:O23403
Length = 287
Score = 122 (48.0 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 47/161 (29%), Positives = 71/161 (44%)
Query: 38 NFFTCPEDISSDEENKSKRRLLLMGAGLLTANL-LPANSLFAQEIPKNYDAFVDRIDGYS 96
N T + + + KS LLM +GL+ + LP + FA P + ++D DGYS
Sbjct: 66 NCLTDAKQVCAVGRRKSMMMGLLM-SGLIVSQANLP--TAFAST-PV-FREYIDTFDGYS 120
Query: 97 YVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFI-PTDKK--DVHDLGPMEEVVSNLARH 153
+ YP +W + G D F+D + +N+ V F P+ + DLG EEV + R
Sbjct: 121 FKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQ 180
Query: 154 VYA-------APNQVADILDMQEKSVD-GKNYYTFEYILTS 186
+ A+IL + D GK YY E + S
Sbjct: 181 YLTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKS 221
Score = 43 (20.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 201 NGRYYTLIVGANERRWKRVRNKLKVVADSFRI 232
N R Y++ + E+ + L+ V DSFR+
Sbjct: 253 NDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRV 284
>TAIR|locus:2079792 [details] [associations]
symbol:AT3G05410 species:3702 "Arabidopsis thaliana"
[GO:0005509 "calcium ion binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM] [GO:0009523 "photosystem II"
evidence=IEA] [GO:0009654 "oxygen evolving complex" evidence=IEA]
[GO:0015979 "photosynthesis" evidence=IEA] [GO:0019898 "extrinsic
to membrane" evidence=IEA] InterPro:IPR002683 Pfam:PF01789
EMBL:CP002686 GO:GO:0019898 GO:GO:0005509 GO:GO:0015979
Gene3D:3.40.1000.10 InterPro:IPR016123 SUPFAM:SSF55724
GO:GO:0009654 IPI:IPI00938794 RefSeq:NP_001154592.1
UniGene:At.40675 PRIDE:F4J7A7 EnsemblPlants:AT3G05410.2
GeneID:819705 KEGG:ath:AT3G05410 OMA:QAPESAW Uniprot:F4J7A7
Length = 280
Score = 91 (37.1 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 33/117 (28%), Positives = 50/117 (42%)
Query: 124 NVRVRFIPTDKK-DVHDLGPMEEVVSNLARHVYAAPNQVADILD-MQEKSV--DGKN--- 176
NV V P + G +EV + R V + Q AD+ + E S+ D +
Sbjct: 164 NVSVIVSPVSPSFSIEAFGGPKEVGEAIVRTVTGS-GQRADLKGTLLESSIRQDSERNLK 222
Query: 177 YYTFEYILTSPNYXXXXXXXXXXXNGRYYTLIVGANERRWKRVRNKLKVVADSFRIL 233
YY E+ + SP + +GR YTL A E W V++++ A SF I+
Sbjct: 223 YYELEFKVESPLFRRHNVAVCCAHSGRLYTLNAQAPESAWSEVKSEIYTTAKSFNII 279
Score = 57 (25.1 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 85 YDAFVDRIDGYSYVYPSDW 103
Y +D ++G+ ++YP+ W
Sbjct: 96 YSRCIDTVEGFEFIYPATW 114
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 235 224 0.00099 112 3 11 22 0.39 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 604 (64 KB)
Total size of DFA: 182 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.48u 0.14s 18.62t Elapsed: 00:00:01
Total cpu time: 18.48u 0.14s 18.62t Elapsed: 00:00:01
Start: Sat May 11 02:22:40 2013 End: Sat May 11 02:22:41 2013