BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026701
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80634|PPL2_ARATH PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2
PE=1 SV=2
Length = 238
Score = 274 bits (701), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 136/238 (57%), Positives = 166/238 (69%), Gaps = 3/238 (1%)
Query: 1 MAVSSLSL--NWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDI-SSDEENKSKRR 57
MAVSSLS+ S T+S K + PN ++ S E N KRR
Sbjct: 1 MAVSSLSIRCGGFSPTISHKTEILCPNPSLKACCLLSSGGKADSSESTYQKGSGNNWKRR 60
Query: 58 LLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKD 117
L+G G L A +PA L A+EIPK+Y FVDR DGYSY YPSDW EF+F HDS FKD
Sbjct: 61 QALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKD 120
Query: 118 RYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNY 177
RYLQLQNVRVRFIPT+K D+H++GPMEEVV +L +H +AAPNQVA I DM+E+ DGKNY
Sbjct: 121 RYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNY 180
Query: 178 YTFEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI 235
YTFEY L +P Y++ S AT+A+ N RYYTLIVGANERRW++V+ +L+VVADS +IL I
Sbjct: 181 YTFEYGLRTPIYATTSFATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238
>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1
PE=1 SV=1
Length = 230
Score = 144 bits (362), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 108/184 (58%), Gaps = 2/184 (1%)
Query: 51 ENKSKRRLLL-MGAGLLTANLLPANSL-FAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEF 108
++K +RRL++ G +LL L FA E K + A D D Y+++YP W E
Sbjct: 45 QDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYPFGWQEVVI 104
Query: 109 TGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQ 168
G D +KD L++V V +PT K+ + + GP +++ L + V A PNQ ++D
Sbjct: 105 EGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQKTTLIDAS 164
Query: 169 EKSVDGKNYYTFEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVAD 228
E VDGK YY FE+ + + NY+ ++ TI + NG +YTL GANERRW++++++L V D
Sbjct: 165 EHDVDGKTYYQFEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVD 224
Query: 229 SFRI 232
SF+I
Sbjct: 225 SFKI 228
>sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria
agrestis GN=PSBP PE=2 SV=1
Length = 264
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 97/226 (42%), Gaps = 35/226 (15%)
Query: 42 CPEDISSD-EENKS---KRRL---LLMGAGLLTANLLPANSLFAQ------EIPKNYDAF 88
C SSD +EN S RRL +L+G+ + + PAN+ + + + N D
Sbjct: 38 CRAQKSSDTDENSSTAVSRRLALTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNTDFL 97
Query: 89 VDRIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEE 145
DG++ + P+ W E EF G ++D + NV V PT KK + D G EE
Sbjct: 98 PYTGDGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEE 157
Query: 146 VVSN----LARHVYAA---------PNQV--ADILDMQEKSVDGKNYYTFEYILTSPNYS 190
+S L + Y+ P+ V A+IL++ V GK YY + + +
Sbjct: 158 FLSTVDYLLGKQAYSGKTASEGGFDPDSVATANILEVSTPVVGGKQYYNISVLTRTADGD 217
Query: 191 SAS---IATIAIANGRYYTLIVGANERRW-KRVRNKLKVVADSFRI 232
+ + + +G+ Y A ++RW K + ++ SF +
Sbjct: 218 EGGKHHVISATVTDGKLYICKAQAGDKRWFKGAKKFVESTTTSFNV 263
>sp|Q42029|PSBP1_ARATH Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis
thaliana GN=PSBP1 PE=1 SV=2
Length = 263
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 32/223 (14%)
Query: 42 CPEDISSDEENKS-KRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDR 91
C S +++N + RRL LL+GA + + + PA++ + + PK N D
Sbjct: 40 CKAQQSHEDDNSAVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYN 99
Query: 92 IDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVS 148
DG+ P+ W E E+ G F+D + N+ V PTDKK + D G EE +S
Sbjct: 100 GDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLS 159
Query: 149 N----LARHVYAAPN-----------QVADILDMQEKSVDGKNYYTFEYILTSPNYSSAS 193
L + Y A+IL+ + V GK YY + + +
Sbjct: 160 QVNYLLGKQAYFGETASEGGFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGG 219
Query: 194 ---IATIAIANGRYYTLIVGANERRW-KRVRNKLKVVADSFRI 232
+ T + G+ Y A ++RW K R ++ A SF +
Sbjct: 220 KHQLITATVNGGKLYICKAQAGDKRWFKGARKFVESAATSFSV 262
>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis
sativus GN=PSBP PE=2 SV=1
Length = 263
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 33/209 (15%)
Query: 56 RRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDRIDGYSYVYPSDWT-- 104
RRL +L+GA L + + PA++ + + PK N D DG+ PS W
Sbjct: 55 RRLALTVLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPYSGDGFKLSIPSKWNPS 114
Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN----LARHVYAA-- 157
E EF G ++D + N+ V PTDKK + D G EE +S L + Y
Sbjct: 115 KEREFPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKVDYLLGKQAYFGKT 174
Query: 158 -------PNQV--ADILDMQEKSVDGKNYYTFEYILT----SPNYSSASIATIAIANGRY 204
P+ V A+IL+ +V+GK+YY F +LT + T + +G+
Sbjct: 175 ASEGGFDPDAVATANILEATASNVNGKDYY-FVSVLTRTADGDEGGKHQLITATVNDGKL 233
Query: 205 YTLIVGANERRW-KRVRNKLKVVADSFRI 232
Y A ++RW K R ++ A SF +
Sbjct: 234 YICKAQAGDKRWFKGARKFVEGAASSFSV 262
>sp|Q04127|PSBP3_TOBAC Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana
tabacum GN=PSBP3 PE=2 SV=1
Length = 266
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 56 RRL---LLMGAGLLTANLLPANSLFAQEI-----PKNYDAFVD-RIDGYSYVYPSDWT-- 104
RRL LL+GA + + + PA++ + + PK F DG+ PS W
Sbjct: 58 RRLALTLLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPN 117
Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN----LARHVYAAPN 159
E E+ G F+D + NV V PTDKK + D G E+ +S L R Y+
Sbjct: 118 KEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKT 177
Query: 160 Q-----------VADILDMQEKSVDGKNYYTFEYILTSPNYSSAS---IATIAIANGRYY 205
+A++L+ V GK YY + + + + + T + +G+ Y
Sbjct: 178 DSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLY 237
Query: 206 TLIVGANERRW-KRVRNKLKVVADSFRI 232
A ++RW K + ++ A SF +
Sbjct: 238 ICKAQAGDKRWFKGAKKFVENTATSFSL 265
>sp|P93566|PSBP_SOLTU Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum
tuberosum GN=PSBP PE=2 SV=1
Length = 260
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 31/220 (14%)
Query: 44 EDISSDEENKSKRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDRIDG 94
+D +++ N RRL LL+G + + + PA++ + + PK N D DG
Sbjct: 40 QDDANNTSNAVSRRLALTLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDG 99
Query: 95 YSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN-- 149
+ P+ W E EF G ++D + N+ V PTDKK + D G EE +S
Sbjct: 100 FKLQIPAKWNPSKEIEFPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEEFLSKVD 159
Query: 150 --LARHVY-----------AAPNQVADILDMQEKSVDGKNYYTFEYILTSPNYSSAS--- 193
L + Y + A++L+ +V GK YY + + +
Sbjct: 160 YLLGKQAYFGKTDSEGGFESGAVATANLLEASSATVGGKQYYYLSVLTRTADGDEGGKHQ 219
Query: 194 IATIAIANGRYYTLIVGANERRW-KRVRNKLKVVADSFRI 232
+ T + +G+ Y A ++RW K + ++ A SF I
Sbjct: 220 LITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSI 259
>sp|P11594|PSBP_SINAL Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba
GN=PSBP PE=2 SV=2
Length = 260
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 32/225 (14%)
Query: 40 FTCPEDISSDEENKS-KRRL---LLMGAGLLTANLLPANSLFAQEI------PKNYDAFV 89
C + +E+N + RRL LL+GA + + + PA++ + + KN D
Sbjct: 35 LVCKAQQTHEEDNSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKKNTDFTA 94
Query: 90 DRIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEV 146
DG+ P+ W E E+ G ++D + N+ V PTDKK + D G EE
Sbjct: 95 YSGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEF 154
Query: 147 VSN----LARHVYAAPN-----------QVADILDMQEKSVDGKNYYTFEYILTSPNYSS 191
+S L + Y A+IL+ + V GK YY + + +
Sbjct: 155 LSQVNYLLGKQAYFGETASEGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADGDE 214
Query: 192 AS---IATIAIANGRYYTLIVGANERRWKRVRNK-LKVVADSFRI 232
+ T + G+ Y A ++RW + NK ++ A SF +
Sbjct: 215 GGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSV 259
>sp|Q40407|PSBP_NARPS Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus
pseudonarcissus GN=PSBP PE=2 SV=1
Length = 265
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 31/205 (15%)
Query: 43 PE-DISSDEENKSKRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDRI 92
PE D +++ + RRL +L+G L + + A++ + + PK N D
Sbjct: 43 PEADCATENDALLSRRLALTILIGGAALGSRVSAADAAYGESANVFGKPKTNTDFQTVTG 102
Query: 93 DGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN 149
DG+ + PS W E EF G ++D + NV V PTDKK + D G E+ +S
Sbjct: 103 DGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQFLSQ 162
Query: 150 ----LARHVYAA---------PNQV--ADILDMQEKSVDGKNYYTFEYILTSPNYSSAS- 193
L + Y PN V A+IL+ V GK+YY+ + + +
Sbjct: 163 VDYLLGKQAYFGKTISEGGFEPNAVRTANILETSTPVVGGKDYYSIHVLTRTADGDEGGK 222
Query: 194 --IATIAIANGRYYTLIVGANERRW 216
+ T +++G+ Y A ++RW
Sbjct: 223 HLLITATVSDGKLYICKAQAGDKRW 247
>sp|P18212|PSBP2_TOBAC Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana
tabacum GN=PSBP2 PE=1 SV=2
Length = 265
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 56 RRL---LLMGAGLLTANLLPANSLFAQEI-----PKNYDAFVD-RIDGYSYVYPSDWT-- 104
RRL +L+GA + + + PA++ + + PK F DG+ PS W
Sbjct: 57 RRLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPN 116
Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN----LARHVYAAPN 159
E E+ G F+D + NV V PTDKK + D G E+ +S L R Y+
Sbjct: 117 KEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKT 176
Query: 160 Q-----------VADILDMQEKSVDGKNYYTFEYILTSPNYSSAS---IATIAIANGRYY 205
+A++L+ V GK YY + + + + + T + +G+ Y
Sbjct: 177 DSEGGFESDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGGKHQLITATVNDGKLY 236
Query: 206 TLIVGANERRW-KRVRNKLKVVADSFRI 232
A ++RW K + ++ A SF +
Sbjct: 237 ICKAQAGDKRWFKGAKKFVENTATSFSL 264
>sp|Q96334|PSBP_BRAJU Oxygen-evolving enhancer protein 2, chloroplastic (Fragment)
OS=Brassica juncea GN=PSBP PE=2 SV=1
Length = 217
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 31/215 (14%)
Query: 49 DEENKSKRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDRIDGYSYVY 99
D+ + RRL LL+GA + + + PA++ + + PK N D DG+
Sbjct: 2 DDTSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFTAINGDGFQVQV 61
Query: 100 PSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN----LAR 152
P+ W E E+ G ++D + N+ V PTDKK + D G EE +S L +
Sbjct: 62 PAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGK 121
Query: 153 HVYAAPNQV-----------ADILDMQEKSVDGKNYYTFEYILTSPNYSSAS---IATIA 198
Y A+IL+ + V GK YY + + + + T
Sbjct: 122 QAYFGETACEGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADEDEGGKHQLITAT 181
Query: 199 IANGRYYTLIVGANERRWKRVRNK-LKVVADSFRI 232
+ G+ Y A ++RW + NK ++ A SF +
Sbjct: 182 VNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSV 216
>sp|Q7DM39|PSBP1_TOBAC Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana
tabacum GN=PSBP1 PE=3 SV=2
Length = 268
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 31/208 (14%)
Query: 56 RRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDRIDGYSYVYPSDWT-- 104
RRL +L+GA + + + PA++ + + PK N D DG+ P+ W
Sbjct: 60 RRLALTVLIGAAAIGSKVSPADAAYGEAANVFGKPKENTDFLAYNGDGFKLQVPAKWNPS 119
Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN----LARHVY---- 155
E EF G ++D + N+ V PTDKK + D G EE ++ L + Y
Sbjct: 120 KEVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPEEFLTQVDFLLGKQAYFGKT 179
Query: 156 -------AAPNQVADILDMQEKSVDGKNYYTFEYILTSPNYSSAS---IATIAIANGRYY 205
+ A++L+ +V GK YY + + + + + + G+ Y
Sbjct: 180 DSEGGFESGAVATANLLETSSSTVGGKEYYILSVLTRTADGDEGGKHQLISATVNGGKLY 239
Query: 206 TLIVGANERRW-KRVRNKLKVVADSFRI 232
A ++RW K R ++ A SF +
Sbjct: 240 ICKAQAGDKRWFKGARKFVENAATSFSV 267
>sp|P12302|PSBP_SPIOL Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia
oleracea GN=PSBP PE=1 SV=1
Length = 267
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 31/208 (14%)
Query: 56 RRL---LLMGAGLLTANLLPANSLFAQEI-----PKNYDAFVD-RIDGYSYVYPSDWT-- 104
RRL +L+GA + + + PA++ + + PK F+ DG+ + PS W
Sbjct: 59 RRLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKKNTEFMPYNGDGFKLLVPSKWNPS 118
Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN----LARHVYAAPN 159
E EF G ++D + N+ V PTDKK + D G E+ +S L + Y
Sbjct: 119 KEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQVDYLLGKQAYFGKT 178
Query: 160 Q-----------VADILDMQEKSVDGKNYYTFEYILTSPNYSSAS---IATIAIANGRYY 205
A++L+ VDGK YY+ + + + + + +G+ Y
Sbjct: 179 DSEGGFDSGVVASANVLESSTPVVDGKQYYSITVLTRTADGDEGGKHQVIAATVKDGKLY 238
Query: 206 TLIVGANERRW-KRVRNKLKVVADSFRI 232
A ++RW K + ++ SF +
Sbjct: 239 ICKAQAGDKRWFKGAKKFVESATSSFSV 266
>sp|P29795|PSBP_SOLLC Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum
lycopersicum GN=PSBP PE=2 SV=1
Length = 258
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 91/227 (40%), Gaps = 32/227 (14%)
Query: 38 NFFTCPEDISSDEENKS-KRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDA 87
N C D N + RRL LL+G + + + PA++ + + PK N D
Sbjct: 31 NQLICRAQKQDDASNAAVSRRLALTLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDF 90
Query: 88 FVDRIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPME 144
DG+ P+ W E E+ G ++D + N+ V PTDKK + D G E
Sbjct: 91 LPYNGDGFKLQVPAKWNPSKEVEYPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPE 150
Query: 145 EVVSN----LARHVY-----------AAPNQVADILDMQEKSVDGKNYYTFEYILTSPNY 189
E +S L + Y + ++L+ +V GK YY + + +
Sbjct: 151 EFLSKVDYLLGKQAYFGKTDSEGGFESGAVATRNLLEASSATVGGKEYYYLSVLTRTADG 210
Query: 190 SSAS---IATIAIANGRYYTLIVGANERRW-KRVRNKLKVVADSFRI 232
+ T + +G+ Y A ++RW K + ++ A SF I
Sbjct: 211 DEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSI 257
>sp|P16059|PSBP_PEA Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum
GN=PSBP PE=1 SV=1
Length = 259
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 31/208 (14%)
Query: 56 RRL---LLMGAGLLTANLLPANSLFAQ------EIPKNYDAFVDRIDGYSYVYPSDWT-- 104
RRL +L+GA + + + PA++ + + + N D DG+ + P+ W
Sbjct: 51 RRLALSVLIGAAAVGSKVSPADAAYGEAANVFGKAKTNTDYLPYNGDGFKLLVPAKWNPS 110
Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN----LARHVYAAPN 159
E EF G ++D + NV V TDKK + D G EE +S L + +
Sbjct: 111 KEREFPGQVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEFLSKVDYLLGKQAFFGQT 170
Query: 160 Q-----------VADILDMQEKSVDGKNYYTFEYILTSPNYSSAS---IATIAIANGRYY 205
VA+IL+ + GK YY + + + + T + +G+ Y
Sbjct: 171 DSEGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVKDGKLY 230
Query: 206 TLIVGANERRW-KRVRNKLKVVADSFRI 232
A ++RW K R ++ A SF +
Sbjct: 231 ICKAQAGDKRWFKGARKFVEDTASSFSV 258
>sp|P85189|PSBP_HELAN Oxygen-evolving enhancer protein 2, chloroplastic OS=Helianthus
annuus GN=PSBP PE=1 SV=1
Length = 263
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 34/204 (16%)
Query: 44 EDISSDEENKSKRRLL--LMGAGLLTANLLPANS-------LFAQEIPKNYDAFVDRIDG 94
E+ ++++ S+R L L+GA + + PA++ +F ++ + + G
Sbjct: 45 EETATNDAAISRRLALTVLIGAAAVGTKVSPADAAYGEAANVFGKQKSTEFSQYTG--PG 102
Query: 95 YSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN-- 149
+ P+ W E E+ G ++D + N+ V PTDKK + D G EE +S
Sbjct: 103 FKLSVPAKWNPSKEVEYPGQVLRYEDNFDTTSNLAVMVTPTDKKAITDYGAPEEFLSKVD 162
Query: 150 --LARHVYAAPN-----------QVADILDMQEKSVDGKNYYTFEYILT----SPNYSSA 192
L + Y A+IL++ +VDGK YY F +LT
Sbjct: 163 YLLGKQAYFGKTASEGGFEQDAVATANILEVATPTVDGKQYY-FLSVLTRTADGDEGGKH 221
Query: 193 SIATIAIANGRYYTLIVGANERRW 216
+ + +++G+ Y A ++RW
Sbjct: 222 QLISATVSDGKLYICKAQAGDKRW 245
>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis
thaliana GN=PPD1 PE=1 SV=1
Length = 287
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 32/212 (15%)
Query: 54 SKRRLLLMGAGLLTANLL--PANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGH 111
+R+ ++MG LL + L+ AN A + ++D DGYS+ YP +W + G
Sbjct: 78 GRRKSMMMG--LLMSGLIVSQANLPTAFASTPVFREYIDTFDGYSFKYPQNWIQVRGAGA 135
Query: 112 DSGFKDRYLQLQNVRVRFIPTDKKD---VHDLGPMEEVVSNLARHVYA-------APNQV 161
D F+D + +N+ V F + + DLG EEV + R +
Sbjct: 136 DIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQ 195
Query: 162 ADILDMQEKSV-DGKNYYTFEYILTS----------PN-------YSSASIATIAIANGR 203
A+IL + DGK YY E + S P ++ +A + + N R
Sbjct: 196 ANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDR 255
Query: 204 YYTLIVGANERRWKRVRNKLKVVADSFRILDI 235
Y++ + E+ + L+ V DSFR+ I
Sbjct: 256 LYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287
>sp|Q00434|PSBP_WHEAT Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum
aestivum GN=PSBP PE=2 SV=1
Length = 258
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 21/171 (12%)
Query: 83 KNYDAFVDRIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHD 139
KN D +G+ + P+ W E EF G ++D + N+ V PT KK + D
Sbjct: 87 KNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVLRYEDNFDATSNLSVIINPTTKKTITD 146
Query: 140 LGPMEEVVSN----LARHVYAAPNQ-----------VADILDMQEKSVDGKNYYTFEYIL 184
G EE +S L + Y A++L+ VDGK YY+ +
Sbjct: 147 YGSPEEFLSQVGFLLGQQSYGGKTDSEGGFESDAVATANVLESSAPVVDGKQYYSITVLT 206
Query: 185 TSPNYSSAS---IATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRI 232
+ + + T +A+G+ Y ++R +K + ++ A SF +
Sbjct: 207 RTADGDEGGKHQLITATVADGKLYVCKAQRDKRWFKGAKKFVENAAGSFSV 257
>sp|P82715|PPD5_ARATH PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis
thaliana GN=PPD5 PE=1 SV=3
Length = 297
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 102/236 (43%), Gaps = 52/236 (22%)
Query: 48 SDEENKSKRRLLLMGAGLLTANLLPANS--LFAQEIPK------NYDAFVDRIDGYSYVY 99
S E+ S+R L+L+G + LP +S A+E K VD I+ YSY Y
Sbjct: 47 SSEKGLSRRDLVLIGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAY 106
Query: 100 PSDWT--EFEFTGHDSGFKDRYLQL----QNVRVRFIPTDKKDVHD-------LGPMEEV 146
P D+ + F +S +RY + R+R + +++ D+ D +GP
Sbjct: 107 PLDYPSEKLVFKWVESRKPERYSSAAPLSPDARLRIV-SERVDLTDNLVISISIGPPNSR 165
Query: 147 VSNLARHVYAAPNQVAD---------------------ILDMQEKSVDGKNYYTFEYIL- 184
+++ + ++A +VAD +LD +DG+ Y+ +EY++
Sbjct: 166 LTSKEKKTWSA-KEVADSVLSDKSALRVTSSQRLEESSVLDAHASDIDGEPYWYYEYLVR 224
Query: 185 TSPNYSSAS-------IATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRIL 233
SP + + I++ A +G YT+ ++W ++ L+ SFR+L
Sbjct: 225 KSPTKIAEASKLYRHYISSTAERDGYLYTINASTLGKQWDKMGPVLERAVGSFRLL 280
>sp|P11471|PSBP_CHLRE Oxygen-evolving enhancer protein 2, chloroplastic OS=Chlamydomonas
reinhardtii GN=PSBP PE=2 SV=1
Length = 245
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 24/165 (14%)
Query: 93 DGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGP----MEE 145
DG++ + P+ W E +F G ++D + + N+ V TDKK + D G +E
Sbjct: 81 DGFALLLPAKWNPSKENDFPGVILRYEDNFDAVNNLVVIAQDTDKKAIADFGSQDKFLES 140
Query: 146 VVSNLARHVYA---------APNQV--ADILDMQEKS-VDGKNYYTFEYILTSPNYSSAS 193
V L + Y+ APN+V A +LD+ + GK YY +E ++ S +
Sbjct: 141 VSYLLGKQAYSGETQSEGGFAPNRVSAASLLDVSTTTDKKGKTYYKYELLVRSADGDEGG 200
Query: 194 ----IATIAIANGRYYTLIVGANERRWKRVRNKLKVVA-DSFRIL 233
I ++ + Y + + ++RW + K + A DSF ++
Sbjct: 201 RHQLIGATVGSDNKLYIIKIQIGDKRWFKGAKKEAMGAFDSFTVV 245
>sp|O49292|PPD4_ARATH PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis
thaliana GN=PPD4 PE=1 SV=2
Length = 260
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 20/152 (13%)
Query: 95 YSYVYPSDWTEFEFTGHDSGFKD---RYLQLQNVRVRFIPT----------DKKDVHDLG 141
Y++ P DW E + D G + R+ + R+ I D + ++G
Sbjct: 116 YAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIG 175
Query: 142 PMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTFEYILTSPNYSSASIATIAIAN 201
+V++ V N +L DG+ YY FE L P+ + T A
Sbjct: 176 QPAKVINAFGPEVIGE-NVEGKVLSSNVAEHDGRLYYQFE--LEPPHV----LITATAAG 228
Query: 202 GRYYTLIVGANERRWKRVRNKLKVVADSFRIL 233
R Y V N +WKR LK +A SFRI+
Sbjct: 229 NRLYLFSVTGNGLQWKRHYKDLKRIASSFRIV 260
>sp|Q9LXX5|PPD6_ARATH PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis
thaliana GN=PPD6 PE=1 SV=1
Length = 262
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 13/159 (8%)
Query: 81 IPKNYDAF-VDRIDGYSYVYPS---DWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKD 136
+P N+ + I +Y P W E +F G + + + +R
Sbjct: 110 LPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQG---KVQVVASPLIRLTNKPNAT 166
Query: 137 VHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTFEYILTSPNYSSAS--I 194
+ DLG E+V+++L V ++L + + + YY +Y+L +P + S +
Sbjct: 167 IEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYY--KYVLETPFALTGSHNL 224
Query: 195 ATIAIANGRYYTL-IVGANERRWKRVRNKLKVVADSFRI 232
A A A G L +V A E++W+ + L+ + DSF++
Sbjct: 225 AK-ATAKGSTVVLFVVSATEKQWQSSQKTLEAILDSFQL 262
>sp|O49344|PSBP2_ARATH Putative oxygen-evolving enhancer protein 2-2 OS=Arabidopsis
thaliana GN=PSBP2 PE=5 SV=3
Length = 125
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 19/121 (15%)
Query: 131 PTDKKDVHDLGPMEEVVSN----LARHVYAAPN-----------QVADILDMQEKSVDGK 175
PTDKK + D G E+ +S L + Y A+IL+ + + GK
Sbjct: 4 PTDKKSITDYGSPEQFLSQVNYLLGKQAYVGETASEGGFDANAVATANILETSTQEIGGK 63
Query: 176 NYYTFEYILTSPNYSSAS---IATIAIANGRYYTLIVGANERRW-KRVRNKLKVVADSFR 231
YY + + + + T + G+ Y A ++RW K R ++ A SF
Sbjct: 64 EYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFS 123
Query: 232 I 232
+
Sbjct: 124 V 124
>sp|Q2A1K3|ACON_FRATH Aconitate hydratase OS=Francisella tularensis subsp. holarctica
(strain LVS) GN=acn PE=3 SV=1
Length = 937
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 26 ELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLLMGAGLLTANLLPANSLFAQEIPKNY 85
E S+T C NFF + + D + K R LL++G + T ++ PA + IP+ Y
Sbjct: 637 EFDSSSTYIQCPNFFEKFAEGNDDLDIKGARTLLMLGDSVTTDHISPAGA-----IPEEY 691
Query: 86 DA-------FVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRF 129
A V++ D SY E G + + R L L NV F
Sbjct: 692 PAGQYLKSHGVEKKDFNSYGSRRGNHEVMMRGTFANIRIRNLLLDNVEGGF 742
>sp|P82658|TL19_ARATH Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis
thaliana GN=At3g63540 PE=1 SV=2
Length = 229
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 20/162 (12%)
Query: 84 NYDAFVDRIDGYSYVY--PSDWTEFEFT-------GHDSGFKDRYLQLQNVRVRFIPTDK 134
Y DR YVY P W E + G DS F + + + + F+
Sbjct: 73 GYGGNSDRKTSAEYVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFL---- 128
Query: 135 KDVHDLGPMEEVVSNLARHVYAAPNQVAD---ILDMQEKSVDGKNYYTFEYILTSPNYSS 191
L P + +++NLA + +A ++ + K G+ YY +E
Sbjct: 129 AGFRQLAPRDVILNNLALSDVELQDLIAGADKVVSEERKDETGQVYYLYEI----DGVGK 184
Query: 192 ASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRIL 233
S+ T+ + R Y V A W R + L + DSF+ +
Sbjct: 185 HSLITVTCSKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFKTV 226
>sp|O30052|ISCS1_ARCFU Probable cysteine desulfurase 1 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=iscS1 PE=3 SV=2
Length = 382
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 118 RYLQLQNVRVRFIPTDKKDVHDLGPMEEVV--SNLARHVYAAPNQVADILDMQEKS 171
+YLQ Q V FIP DK DL +EE + + V A N++ I ++E S
Sbjct: 106 KYLQKQGFEVEFIPVDKYGTVDLEFIEEKIREDTILVSVQHANNEIGTIQPIKEIS 161
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,808,938
Number of Sequences: 539616
Number of extensions: 3505814
Number of successful extensions: 8354
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 8319
Number of HSP's gapped (non-prelim): 30
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)