Query 026701
Match_columns 235
No_of_seqs 202 out of 385
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 19:59:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xb3_A PSBP protein; photosynt 100.0 1.4E-39 4.6E-44 267.8 20.0 153 81-233 4-165 (165)
2 1v2b_A 23-kDa polypeptide of p 100.0 1.9E-38 6.4E-43 264.5 13.4 151 81-233 5-177 (177)
3 2lnj_A SLL1418 protein, putati 100.0 2.3E-40 7.9E-45 274.2 0.0 154 80-233 9-170 (170)
4 1tu1_A Hypothetical protein PA 99.0 1.5E-08 5.2E-13 81.2 14.6 137 85-233 3-142 (148)
5 3lyd_A Uncharacterized protein 98.3 7.6E-05 2.6E-09 60.6 17.0 132 93-233 18-158 (161)
6 3hlz_A Uncharacterized protein 73.2 3.8 0.00013 34.8 4.5 43 86-129 5-48 (269)
7 4exr_A Putative lipoprotein; Y 51.9 65 0.0022 25.5 8.0 62 142-212 33-94 (174)
8 2pq4_B Periplasmic nitrate red 44.7 9.2 0.00032 22.6 1.4 11 54-64 3-13 (35)
9 4exr_A Putative lipoprotein; Y 33.1 1.8E+02 0.0061 22.9 8.0 39 139-183 112-150 (174)
10 3ld7_A LIN0431 protein; DUF131 26.3 1.8E+02 0.0063 20.9 6.6 44 172-218 14-66 (101)
11 3k44_A Purine-rich binding pro 20.8 3E+02 0.01 21.3 6.9 62 165-230 82-143 (146)
12 3ita_A D-alanyl-D-alanine carb 20.2 2.3E+02 0.0079 24.9 6.8 46 189-234 215-263 (352)
13 2l5f_A PRE-mRNA-processing fac 20.1 1.3E+02 0.0045 21.0 4.3 20 79-99 10-29 (92)
No 1
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=100.00 E-value=1.4e-39 Score=267.84 Aligned_cols=153 Identities=31% Similarity=0.593 Sum_probs=142.1
Q ss_pred ccCcccceeecCCceEEEcCCCceeeeec-CccceeeccccCcccEEEEEecCCC-CCccccCChHHHHHHHHhhHhcCC
Q 026701 81 IPKNYDAFVDRIDGYSYVYPSDWTEFEFT-GHDSGFKDRYLQLQNVRVRFIPTDK-KDVHDLGPMEEVVSNLARHVYAAP 158 (235)
Q Consensus 81 ~p~g~~~y~D~~~gysf~~P~~W~e~~~~-g~d~~f~d~~~~~~nVsV~i~p~~~-~si~d~Gspeeva~~l~~~~~~~p 158 (235)
.|+||++|.|+++||+|.||++|++..++ |++++|+|+.+..+||+|+|.|..+ .+|++||+|+++++.|+++.+++|
T Consensus 4 ~~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~~~~~ 83 (165)
T 2xb3_A 4 ATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPS 83 (165)
T ss_dssp --CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHTTSCT
T ss_pred CCCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHHHHhhcCC
Confidence 47899999999999999999999998887 8999999999888999999999764 899999999999999999988777
Q ss_pred --CCceEEEEeeeeeeCCeeEEEEEEEEeCCC-----CcceEEEEEEEECCeEEEEEEEecchhhHHHHHHHHhhhccce
Q 026701 159 --NQVADILDMQEKSVDGKNYYTFEYILTSPN-----YSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFR 231 (235)
Q Consensus 159 --~~~a~ll~a~~~~~dG~~YY~~Ey~~~s~~-----~~rH~l~~~tv~~g~LYtl~~~a~e~~W~k~~~~l~~vv~SFr 231 (235)
++.++|+++.+++.+|++||+|||++++++ +.||.|+++++++|+||+|++|+||++|+++++.|++|++||+
T Consensus 84 ~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g~lY~l~~sape~~w~~~~~~l~~v~~SF~ 163 (165)
T 2xb3_A 84 ESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQFKTIVSSFT 163 (165)
T ss_dssp TSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEETTEEEEEEEEEEGGGHHHHHHHHHHHHHTCE
T ss_pred CCCcceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEECCEEEEEEEecCHHHhHHHHHHHHHHHhhEE
Confidence 478999999999999999999999999888 8999999999999999999999999999999999999999999
Q ss_pred ee
Q 026701 232 IL 233 (235)
Q Consensus 232 v~ 233 (235)
++
T Consensus 164 v~ 165 (165)
T 2xb3_A 164 VY 165 (165)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 2
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=100.00 E-value=1.9e-38 Score=264.55 Aligned_cols=151 Identities=26% Similarity=0.538 Sum_probs=127.9
Q ss_pred ccCcccceeecCCceEEEcCCCcee---eeecCccceeeccccCcccEEEEEecCCCCCccccCChHHHH----HHHHhh
Q 026701 81 IPKNYDAFVDRIDGYSYVYPSDWTE---FEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVV----SNLARH 153 (235)
Q Consensus 81 ~p~g~~~y~D~~~gysf~~P~~W~e---~~~~g~d~~f~d~~~~~~nVsV~i~p~~~~si~d~Gspeeva----~~l~~~ 153 (235)
.|.||+.|. ++||+|.||.+|++ ..++|++++|+|+++..+||+|+|.|+++++|+|||+|++++ +.|+++
T Consensus 5 ~~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~~ 82 (177)
T 1v2b_A 5 TDTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQ 82 (177)
T ss_dssp --CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC---
T ss_pred CCCCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHHHH
Confidence 357999998 79999999999974 446699999999999999999999999889999999999965 455555
Q ss_pred HhcC---------CC--CceEEEEeeeeeeCCeeEEEEEEEEeCCC---CcceEEEEEEEECCeEEEEEEEecchhhHHH
Q 026701 154 VYAA---------PN--QVADILDMQEKSVDGKNYYTFEYILTSPN---YSSASIATIAIANGRYYTLIVGANERRWKRV 219 (235)
Q Consensus 154 ~~~~---------p~--~~a~ll~a~~~~~dG~~YY~~Ey~~~s~~---~~rH~l~~~tv~~g~LYtl~~~a~e~~W~k~ 219 (235)
.+++ |+ +.++|+++++++.||++||+|||.+++++ +.||+|+++++++|+||+|++|++|++|++.
T Consensus 83 ~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~gkLY~l~~~a~e~~W~k~ 162 (177)
T 1v2b_A 83 AYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKG 162 (177)
T ss_dssp ---------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCSTT
T ss_pred hhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEECCEEEEEEEecCHHHhhhh
Confidence 5543 22 56899999999999999999999999887 7999999999999999999999999999995
Q ss_pred -HHHHHhhhccceee
Q 026701 220 -RNKLKVVADSFRIL 233 (235)
Q Consensus 220 -~~~l~~vv~SFrv~ 233 (235)
++.|++|++||+|.
T Consensus 163 ~~~~l~~v~~SF~v~ 177 (177)
T 1v2b_A 163 AKKFVENTATSFSLA 177 (177)
T ss_dssp TTHHHHHHHHTCEEC
T ss_pred HHHHHHHHHhheecC
Confidence 99999999999983
No 3
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=100.00 E-value=2.3e-40 Score=274.22 Aligned_cols=154 Identities=26% Similarity=0.499 Sum_probs=144.5
Q ss_pred cccCcccceeecCCceEEEcCCCceeeeec----CccceeeccccCcccEEEEEecCCC-CCccccCChHHHHHHHHhhH
Q 026701 80 EIPKNYDAFVDRIDGYSYVYPSDWTEFEFT----GHDSGFKDRYLQLQNVRVRFIPTDK-KDVHDLGPMEEVVSNLARHV 154 (235)
Q Consensus 80 ~~p~g~~~y~D~~~gysf~~P~~W~e~~~~----g~d~~f~d~~~~~~nVsV~i~p~~~-~si~d~Gspeeva~~l~~~~ 154 (235)
+.|+||+.|.|+.+||+|.||++|++.+++ |.+++|+|+.+..+||+|+|+|.++ ++|+|||+|++++++|+++.
T Consensus 9 ~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~ 88 (170)
T 2lnj_A 9 VGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTV 88 (170)
Confidence 357899999999999999999999988777 8999999999999999999999865 89999999999999999998
Q ss_pred hcCC--CCceEEEEeeeeeeCCeeEEEEEEEEeCC-CCcceEEEEEEEECCeEEEEEEEecchhhHHHHHHHHhhhccce
Q 026701 155 YAAP--NQVADILDMQEKSVDGKNYYTFEYILTSP-NYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFR 231 (235)
Q Consensus 155 ~~~p--~~~a~ll~a~~~~~dG~~YY~~Ey~~~s~-~~~rH~l~~~tv~~g~LYtl~~~a~e~~W~k~~~~l~~vv~SFr 231 (235)
++++ ++.++|+++.+++.||++||+|||+++++ ++.||.++++++++|+||+|++++||++|++.++.|++|++||+
T Consensus 89 ~~~~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gklY~l~~~ape~~w~~~~~~l~~v~~SF~ 168 (170)
T 2lnj_A 89 NDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKLITFDLSTAEDRWDTVKSLFDTVASSFH 168 (170)
Confidence 8877 47899999999999999999999999988 79999999999999999999999999999999999999999999
Q ss_pred ee
Q 026701 232 IL 233 (235)
Q Consensus 232 v~ 233 (235)
|+
T Consensus 169 v~ 170 (170)
T 2lnj_A 169 VY 170 (170)
Confidence 85
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=98.98 E-value=1.5e-08 Score=81.19 Aligned_cols=137 Identities=6% Similarity=0.017 Sum_probs=93.5
Q ss_pred ccceeecCCceEEEcCCCceeeeecCccceeeccccCc--ccEEEEEecCCCCCccccCChHHHHHHHHhhHh-cCCCCc
Q 026701 85 YDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQL--QNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVY-AAPNQV 161 (235)
Q Consensus 85 ~~~y~D~~~gysf~~P~~W~e~~~~g~d~~f~d~~~~~--~nVsV~i~p~~~~si~d~Gspeeva~~l~~~~~-~~p~~~ 161 (235)
+..|. .++++|.+|.+|+.... .+.+.....+. -++.|...+. .+=.+++...+.-++... .-++
T Consensus 3 m~~y~--~~Egsl~lP~gw~D~t~---nv~~~~~~~~~g~~~lvIsR~~~-----~~~~~l~~~~~~q~~~l~~~l~~-- 70 (148)
T 1tu1_A 3 MTLYR--LHEADLEIPDAWQDQSI---NIFKLPASGPAREASFVISRDAS-----QGDAPFADYVARQLENAEKQLPG-- 70 (148)
T ss_dssp EEEEE--CSSEEEEEETTSEECCB---EEEEECCBTTBCCEEEEEEEECC-----CTTSCHHHHHHHHHHHHHHHSTT--
T ss_pred CceEE--ECCEEEeCCCCcEeeeE---EEEEcCCCCCCCceEEEEEeccC-----CCCCCHHHHHHHHHHHHHhhCcC--
Confidence 45666 78999999999985432 23332222221 2444443332 121345555543322221 1133
Q ss_pred eEEEEeeeeeeCCeeEEEEEEEEeCCCCcceEEEEEEEECCeEEEEEEEecchhhHHHHHHHHhhhccceee
Q 026701 162 ADILDMQEKSVDGKNYYTFEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRIL 233 (235)
Q Consensus 162 a~ll~a~~~~~dG~~YY~~Ey~~~s~~~~rH~l~~~tv~~g~LYtl~~~a~e~~W~k~~~~l~~vv~SFrv~ 233 (235)
.+++.......+|.+-..|||++...++.+|.+..+.+.++++|+|+++++...|+..++.++.|++||++-
T Consensus 71 y~~~~~~~~~l~g~~a~~~e~~~~~~g~~~~Q~q~~~~~~~~~l~~t~t~~~~~~~~~~~~~~~i~~Sf~~~ 142 (148)
T 1tu1_A 71 FKLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQAMQTLVPR 142 (148)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHHHHHHTCEEC
T ss_pred cEEeeeEeEEEcCCcEEEEEEEEccCCEEEEEEEEEEEECCeEEEEEEEcCCCCCHHHHHHHHHHHHhcccC
Confidence 445554444568999999999999877888999999998779999999999999999999999999999963
No 5
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=98.27 E-value=7.6e-05 Score=60.63 Aligned_cols=132 Identities=11% Similarity=0.104 Sum_probs=86.9
Q ss_pred CceEEEcCCCceeeeecCccceee-ccc--cCcccEEEEEecCCCCCccccCChHHHHHHHHhhHhc-CCCCceEEEEee
Q 026701 93 DGYSYVYPSDWTEFEFTGHDSGFK-DRY--LQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYA-APNQVADILDMQ 168 (235)
Q Consensus 93 ~gysf~~P~~W~e~~~~g~d~~f~-d~~--~~~~nVsV~i~p~~~~si~d~Gspeeva~~l~~~~~~-~p~~~a~ll~a~ 168 (235)
-++++..|.||+.....|.-..-. +.. +-..|+-|++...... + .|+....| .+..+ -|+ .++++..
T Consensus 18 p~~~v~~P~gWe~~~~~~~~~~~~~~~~~~~F~pN~vVtv~r~~~~----~--~e~~r~el-~~~~~~lp~--~~~~~r~ 88 (161)
T 3lyd_A 18 TGFTVPIPETWQPDPTMGTQFAARPHTPPQGFTPNIIGTVRRAATG----A--LHNQRTEL-DQRATQLPD--YAERGRT 88 (161)
T ss_dssp CEEEEECCTTEEECTTSSSSEEEEESSCCSSSCCEEEEEEEEECTT----H--HHHHHHHH-HHHHTTSTT--CEEEEEE
T ss_pred ceeeccCCCCceEcCCCCceEEeccCCCCCCccccEEEEEEecCcH----H--HHHHHHHH-HHHHhhCCC--cEeeccc
Confidence 579999999998876555432222 111 1235788877653211 2 24333333 22222 244 3455555
Q ss_pred eeeeCCeeEEEEEEEEeCCCCcceE---EEEEEEECCeEEEE--EEEecchhhHHHHHHHHhhhccceee
Q 026701 169 EKSVDGKNYYTFEYILTSPNYSSAS---IATIAIANGRYYTL--IVGANERRWKRVRNKLKVVADSFRIL 233 (235)
Q Consensus 169 ~~~~dG~~YY~~Ey~~~s~~~~rH~---l~~~tv~~g~LYtl--~~~a~e~~W~k~~~~l~~vv~SFrv~ 233 (235)
..+.+|.+-+..||.+..++.+.+. ..++...++..|.+ ++++.+.+-+.....++.|++||+|.
T Consensus 89 ~~~~~G~pa~~iey~y~~~~~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~~~~~d~q~iv~sl~v~ 158 (161)
T 3lyd_A 89 ETTVDGFPAYHIEYAYRHHGTITIAQMITLVEVSHPHAVDIIQLTATCAGDQTADYWDTFRLMHADLTVQ 158 (161)
T ss_dssp EEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHHHHHHHHHHHHHTCEEE
T ss_pred ccccCCcccEEEEEEEecCCCceEeeEEEEEEEecCCEEEEEEEEEEeccccchHHHHHHHHHhheeEec
Confidence 5578999999999999877777762 33333346666666 99999999999999999999999986
No 6
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=73.18 E-value=3.8 Score=34.84 Aligned_cols=43 Identities=35% Similarity=0.519 Sum_probs=31.8
Q ss_pred cceeecCCceEEEcCCCceeeeecCccc-eeeccccCcccEEEEE
Q 026701 86 DAFVDRIDGYSYVYPSDWTEFEFTGHDS-GFKDRYLQLQNVRVRF 129 (235)
Q Consensus 86 ~~y~D~~~gysf~~P~~W~e~~~~g~d~-~f~d~~~~~~nVsV~i 129 (235)
+-|..|+.=|+..||.+|.|.+- |.++ .|.+|..=..|.++.-
T Consensus 5 kk~ISPgaWfs~~yP~~W~EfEd-~E~sflFynp~~WtGNfRISa 48 (269)
T 3hlz_A 5 KKFISPGAWFSMNYPSDWNEFED-GEGSFLFYNPDVWTGNFRISA 48 (269)
T ss_dssp EEEECGGGCEEEEECTTCEEECC-CTTEEEEECSSSCCCEEEEEE
T ss_pred ceeecCCceeEEecCCCcccccC-CCCceeeeChhhcccceEEEe
Confidence 45788888899999999998863 4343 6778876667766543
No 7
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=51.88 E-value=65 Score=25.54 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=35.9
Q ss_pred ChHHHHHHHHhhHhcCCCCceEEEEeeeeeeCCeeEEEEEEEEeCCCCcceEEEEEEEECCeEEEEEEEec
Q 026701 142 PMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTFEYILTSPNYSSASIATIAIANGRYYTLIVGAN 212 (235)
Q Consensus 142 speeva~~l~~~~~~~p~~~a~ll~a~~~~~dG~~YY~~Ey~~~s~~~~rH~l~~~tv~~g~LYtl~~~a~ 212 (235)
+++++...+.+.. || +.|.+..-...+|+..|.+|+. . ++..|-+- +-...|++.-......
T Consensus 33 s~e~A~~~a~~~~---pg--a~I~~iele~~~G~~vYEVe~~--~-~g~e~ev~-IDA~tG~Vl~~~~e~~ 94 (174)
T 4exr_A 33 PYTDAINIFKDKY---KD--ADIVDLSLERDLNKFVYTVEGV--D-DNNEYKMK-IDANTKDVLEDKTEKL 94 (174)
T ss_dssp CHHHHHHHHHHHS---TT--CEEEEEEEEEETTEEEEEEEEE--C-SSEEEEEE-EETTTCCEEEEEEEEC
T ss_pred CHHHHHHHHHHHC---CC--CEEEEEEEEEeCCEEEEEEEEE--E-CCEEEEEE-EECCCCcEeccccccc
Confidence 5677766655543 55 3466665555689877777775 2 33334333 3335677776665543
No 8
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=44.74 E-value=9.2 Score=22.64 Aligned_cols=11 Identities=18% Similarity=0.286 Sum_probs=8.5
Q ss_pred hhhHHHHHHHH
Q 026701 54 SKRRLLLMGAG 64 (235)
Q Consensus 54 ~~RR~~L~g~~ 64 (235)
++||.+|.+.+
T Consensus 3 lsRR~FLK~~a 13 (35)
T 2pq4_B 3 LSRRSFMKANA 13 (35)
T ss_dssp CCSHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 57999998643
No 9
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=33.10 E-value=1.8e+02 Score=22.90 Aligned_cols=39 Identities=5% Similarity=0.017 Sum_probs=25.0
Q ss_pred ccCChHHHHHHHHhhHhcCCCCceEEEEeeeeeeCCeeEEEEEEE
Q 026701 139 DLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTFEYI 183 (235)
Q Consensus 139 d~Gspeeva~~l~~~~~~~p~~~a~ll~a~~~~~dG~~YY~~Ey~ 183 (235)
..-+++++....++.. +| .+++..-...+|+.+|.+|+.
T Consensus 112 ~~is~~~A~~~Al~~~---~G---~v~e~eLd~d~G~~vYevei~ 150 (174)
T 4exr_A 112 DIMTPQQAMEIALKEQ---NG---IVKEWSLDKDLDVTFYKIRID 150 (174)
T ss_dssp TCCCHHHHHHHHHHHS---CS---EEEEEEEEEETTEEEEEEEEE
T ss_pred CCcCHHHHHHHHHHhC---CC---eEEEEEEEEeCCEEEEEEEEE
Confidence 3456677665544443 44 466665555689999988887
No 10
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua}
Probab=26.27 E-value=1.8e+02 Score=20.88 Aligned_cols=44 Identities=7% Similarity=0.025 Sum_probs=29.5
Q ss_pred eCCeeEEEEEEE---------EeCCCCcceEEEEEEEECCeEEEEEEEecchhhHH
Q 026701 172 VDGKNYYTFEYI---------LTSPNYSSASIATIAIANGRYYTLIVGANERRWKR 218 (235)
Q Consensus 172 ~dG~~YY~~Ey~---------~~s~~~~rH~l~~~tv~~g~LYtl~~~a~e~~W~k 218 (235)
+||+.|+.|.+. +..+.+ . ...+-+.||+.......||++---+
T Consensus 14 vdGk~~~~i~L~~~~~~~~~~i~~~~G-~--~n~ieI~dg~vrv~es~CPdkiCv~ 66 (101)
T 3ld7_A 14 QNGKVIREIPLTGHKGNEQFTIKGKGA-Q--YNLMEVDGERIRIKEDNSPDQVGVK 66 (101)
T ss_dssp ETTEEEEEEECTTCBSEEEEEEECSTT-C--EEEEEEETTEEEEEEECCSSCHHHH
T ss_pred ECCEEEEEEECCCCCCCEEEEEEcCCC-C--EEEEEEECCEEEEEECCCCCccccc
Confidence 577777776553 222222 1 2567889999999999999875443
No 11
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster}
Probab=20.78 E-value=3e+02 Score=21.31 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=38.1
Q ss_pred EEeeeeeeCCeeEEEEEEEEeCCCCcceEEEEEEEECCeEEEEEEEecchhhHHHHHHHHhhhccc
Q 026701 165 LDMQEKSVDGKNYYTFEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSF 230 (235)
Q Consensus 165 l~a~~~~~dG~~YY~~Ey~~~s~~~~rH~l~~~tv~~g~LYtl~~~a~e~~W~k~~~~l~~vv~SF 230 (235)
+.++.-.++.+.|| ++..-.. .++-.-++=++..| -|--++..|++-|..-++.|..+++=|
T Consensus 82 l~s~~i~~~~k~fy-fDl~~N~--RGrFLRIsE~~~~~-~~R~~I~iP~~g~~~Fr~~l~~~~~~~ 143 (146)
T 3k44_A 82 LKSEMMIKDYRRYY-LDLKENA--RGRFLRVSQTITRG-GPRSQIALPAQGMIEFRDALTDLLEEF 143 (146)
T ss_dssp EEEEEEEETTEEEE-EEEEEET--TEEEEEEEEEESSC-CCCEEEEEEGGGHHHHHHHHHHHHHHH
T ss_pred ccchheeccCceEE-EEecccC--cceEEEEEEeeccC-CCcceEEecHHHHHHHHHHHHHHHHHh
Confidence 44444457888876 7775422 22322233222122 267788889999999999888877654
No 12
>3ita_A D-alanyl-D-alanine carboxypeptidase DACC; ppenicillin-binding protein, BP6, DD-carboxypeptidase, peptidoglycan, ampicillin, acyl-enzyme complex; HET: AIX AIC; 1.80A {Escherichia coli} PDB: 3it9_A* 3itb_A*
Probab=20.16 E-value=2.3e+02 Score=24.90 Aligned_cols=46 Identities=13% Similarity=0.162 Sum_probs=34.8
Q ss_pred CcceEEEEEEEECCe-EEEEEEEecc--hhhHHHHHHHHhhhccceeee
Q 026701 189 YSSASIATIAIANGR-YYTLIVGANE--RRWKRVRNKLKVVADSFRILD 234 (235)
Q Consensus 189 ~~rH~l~~~tv~~g~-LYtl~~~a~e--~~W~k~~~~l~~vv~SFrv~~ 234 (235)
...|.|+..+.+||+ |.++.+.++. .||...+..|+-..+.|...+
T Consensus 215 ~AG~~lv~~a~~~g~rlI~Vvlg~~~~~~r~~d~~~Ll~~gf~~~~~~~ 263 (352)
T 3ita_A 215 GAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVT 263 (352)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHHHHHHHHEEEEC
T ss_pred cccceEEEEEEECCcEEEEEEeCCCChHHHHHHHHHHHHHHHhhceEEE
Confidence 345777777788876 6666777764 579999999999999887654
No 13
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=20.09 E-value=1.3e+02 Score=20.98 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=15.2
Q ss_pred ccccCcccceeecCCceEEEc
Q 026701 79 QEIPKNYDAFVDRIDGYSYVY 99 (235)
Q Consensus 79 ~~~p~g~~~y~D~~~gysf~~ 99 (235)
..+|.+|..+.|+ +|..|.|
T Consensus 10 ~~lp~~W~e~~~~-~Gr~YYy 29 (92)
T 2l5f_A 10 SGAKSMWTEHKSP-DGRTYYY 29 (92)
T ss_dssp TBTTTTEEEEECT-TSCEEEE
T ss_pred CCCCCCcEEEEcC-CCCEEEE
Confidence 3467889999988 7777766
Done!